AlfalfaGEDB | Msa0502340

M. sativa cultivar zhongmu-4 / Msa0502340

KEGG: K13457
GO: GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363
PFAM: PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502340	GAU29553.1	64.130	920	311	7	1	903	1	918	0.0	1140

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502340	sp\|Q39214\|RPM1_ARATH	31.760	932	575	18	1	893	1	910	3.12e-130	417

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502340	A0A2Z6MI99	64.130	920	311	7	1	903	1	918	0.0	1140

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016570	Msa0502340	0.817393	3.374765e-52	-8.615850e-47
Msa0016580	Msa0502340	0.828816	7.284874e-55	-8.615850e-47
Msa0018650	Msa0502340	0.806463	8.125699e-50	-8.615850e-47
Msa0064970	Msa0502340	0.811048	8.507957e-51	-8.615850e-47
Msa0107580	Msa0502340	0.818649	1.755721e-52	-8.615850e-47
Msa0110270	Msa0502340	0.818157	2.269596e-52	-8.615850e-47
Msa0117710	Msa0502340	0.819865	9.278514e-53	-8.615850e-47
Msa0142220	Msa0502340	0.832798	7.695391e-56	-8.615850e-47
Msa0153910	Msa0502340	0.804067	2.580949e-49	-8.615850e-47
Msa0175740	Msa0502340	0.811233	7.755540e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0502340	MtrunA17_Chr3g0112511	63.913	920	309	8	1	904	1	913	1097
Msa0502340	MtrunA17_Chr3g0101321	61.039	924	334	8	1	904	1	918	1066
Msa0502340	MtrunA17_Chr3g0101331	59.539	912	336	11	1	881	1	910	1026
Msa0502340	MtrunA17_Chr3g0100961	59.584	913	341	10	1	894	1	904	1008
Msa0502340	MtrunA17_Chr1g0189351	59.448	905	330	12	1	875	1	898	1008
Msa0502340	MtrunA17_Chr3g0100831	57.374	929	365	12	1	908	1	919	980
Msa0502340	MtrunA17_Chr3g0100971	62.993	735	261	5	1	725	1	734	896
Msa0502340	MtrunA17_Chr3g0100801	58.323	823	285	9	4	820	1	771	882
Msa0502340	MtrunA17_Chr3g0100851	59.044	774	295	5	104	872	1	757	860
Msa0502340	MtrunA17_Chr3g0101271	52.018	892	397	12	21	894	8	886	848

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502340	AT3G07040.1	31.760	932	575	18	1	893	1	910	3.17e-131	417
Msa0502340	AT1G53350.1	27.878	947	584	30	1	894	1	901	4.57e-81	281
Msa0502340	AT5G43470.3	28.115	907	590	22	1	875	1	877	6.21e-80	278
Msa0502340	AT5G43470.2	28.115	907	590	22	1	875	1	877	6.21e-80	278
Msa0502340	AT5G43470.4	28.115	907	590	22	1	875	1	877	6.21e-80	278
Msa0502340	AT5G43470.1	28.115	907	590	22	1	875	1	877	6.21e-80	278
Msa0502340	AT5G35450.2	27.516	934	595	27	1	894	1	892	1.04e-79	278
Msa0502340	AT5G35450.1	27.516	934	595	27	1	894	1	892	1.04e-79	278
Msa0502340	AT3G46530.1	28.927	885	549	28	1	862	1	828	4.79e-79	275
Msa0502340	AT5G48620.6	27.692	910	590	26	1	875	1	877	5.31e-79	276

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Find 179 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTTAGAAAATGCAA+GGG	0.588783	3_4:+44449999	Msa0502340:CDS
AAACAGGATTCACATTTAAT+TGG	0.157365	3_4:+44450122	Msa0502340:CDS
AAAGAATCACATGTAGACTT+TGG	0.496904	3_4:+44450596	Msa0502340:CDS
AAAGATTGTTCTTCAGTTAA+AGG	0.119853	3_4:-44449900	None:intergenic
AAATATGGGTGAAACAGGTT+AGG	0.378529	3_4:+44449109	Msa0502340:CDS
AAATCATGCTTGTTATATTT+GGG	0.291325	3_4:+44450194	Msa0502340:CDS
AAATGTTGTTCAATTGAAGT+TGG	0.430989	3_4:+44451222	Msa0502340:CDS
AAATTCTTAGACTACATGCA+AGG	0.612099	3_4:+44451164	Msa0502340:CDS
AACAGGATTCACATTTAATT+GGG	0.403948	3_4:+44450123	Msa0502340:CDS
AACATAAAATAGTGTTTGTA+GGG	0.455004	3_4:-44450921	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGATATCTTCTATGCGAT+AGG	-	chr3_4:44449142-44449161	None:intergenic	30.0%
CTTGCTTTCAAAAACTTTCT+TGG	-	chr3_4:44449535-44449554	None:intergenic	30.0%
GGAATTATTTGCAGCAAAAA+AGG	+	chr3_4:44449712-44449731	Msa0502340:CDS	30.0%
AACATCCATCATAGTCAAAT+TGG	-	chr3_4:44449950-44449969	None:intergenic	30.0%
TATTTGGGAATATATCCAGA+TGG	+	chr3_4:44450209-44450228	Msa0502340:CDS	30.0%
AAGTACTTCCAATGCTTTAA+TGG	+	chr3_4:44450526-44450545	Msa0502340:CDS	30.0%
AGTACTTCCAATGCTTTAAT+GGG	+	chr3_4:44450527-44450546	Msa0502340:CDS	30.0%
AAAGAATCACATGTAGACTT+TGG	+	chr3_4:44450596-44450615	Msa0502340:CDS	30.0%
ATCAAACTTCCCAAATTTGT+AGG	-	chr3_4:44450692-44450711	None:intergenic	30.0%
GATAAACTTCCAAAATCCAT+TGG	+	chr3_4:44450749-44450768	Msa0502340:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	44448919	44452136	44448919	ID=Msa0502340;Name=Msa0502340
chr3_4	mRNA	44448919	44452136	44448919	ID=Msa0502340-mRNA-1;Parent=Msa0502340;Name=Msa0502340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0.5\|1\|0\|0.5\|2\|135\|925
chr3_4	exon	44448919	44451628	44448919	ID=Msa0502340-mRNA-1:exon:9484;Parent=Msa0502340-mRNA-1
chr3_4	exon	44451934	44452136	44451934	ID=Msa0502340-mRNA-1:exon:9485;Parent=Msa0502340-mRNA-1
chr3_4	CDS	44448919	44451628	44448919	ID=Msa0502340-mRNA-1:cds;Parent=Msa0502340-mRNA-1
chr3_4	CDS	44451934	44452001	44451934	ID=Msa0502340-mRNA-1:cds;Parent=Msa0502340-mRNA-1
chr3_4	three_prime_UTR	44452002	44452136	44452002	ID=Msa0502340-mRNA-1:three_prime_utr;Parent=Msa0502340-mRNA-1

Gene Sequence

>Msa0502340

ATGGCAGAAATAGCAGTGTCTTTGGCTATTGACCAACTGCTTCCAGTGTTAACCCAAGAAACCAAACTACTCAAAGGTGTTCGCGAGGAATTTTCAGACATTAAAGATGAGCTGGAAAGCATCCACGCCTTCCTTAAGGATGCTGATAAAAGAGCTGTAGCTAAAGGAGACAAAAACGACGAAGGTGTCAAAATATGGGTGAAACAGGTTAGGGAAGCAGCCTATCGCATAGAAGATATCATTGATGATTATTTGATCCAGGTGGGACAACATCCTCGTAATCGTGGATGTGTATCTTTACTCAAAACTATGGCTCCTCGTCGTCGAATAGCACATGAGATTCAAGATATTAAGTCATTCGTTTGTGAGATCGCGACAAGAAGTAAAAGATATGGCTTCCAACTTTATTCTGCAGTAGGATCAAACTGCTCCACTGTAAGCCTAAATGCCAAATGGCATGACCCAAGACTAGCTGCTCTTTACATGGACGAAGATGAAGTAATGTGCTTTGAAGATTCAAGAGACGAATTGACTGACTGGTTGGTAAAGGGAAGAGAAGAGCGCACTGTCATATCTCTGGTAGCAATGGGAGGGCAGGGAAAAACCACTCTTGCCAAGAAAGTTTTTGAAAGCAAGGAGATCATTAGACACTTTGAAGATTGCCGTGTATGGATCAAAGTTTCTCGATCATATACAGTAAAAAGACTATTGAGGGATATGTTGTGCAAGTTGGGATGCACTAATCCTCTGGATATCTCTATAATGGATCGAGAGTCATTGATTAATGAGGTGAGGAATTATTTGCAGCAAAAAAGGTATCTTATCGTGTTCGATGATGTATGGAATGTACATTTTTGGGATGATATTGAATTTGCTGTAATAGATAATAAAAAAAGAAGCCGGATATTTATGACAACAAGGAACATGAGTGTTGTCATGTCTTGTAAGAAATCTTCTTTTGTGAAAGTGCATGAACTGCAACCTTTAACTGAAGAACAATCTTTGAAGTTGTTTAATAAGAAGGCATTCCAATTTGACTATGATGGATGTTGTCCAAAAGACCTCATCGGTATATCTTCCAAAATTGTTAGAAAATGCAAGGGTTTACCGCTAGCAATTGTTGTCATTGGTAGTCTTTTATCTTCCAAAGAGAAAGATTTATTTGAATGGCAAATGTTTTGTGAAAATCTAAGTTTAGAGCTGAAACAGGATTCACATTTAATTGGGATAAAAAAAATTTTAGGTTACAGTTATGATGAGTTGCCATACAACCTTAAATCATGCTTGTTATATTTGGGAATATATCCAGATGGTTGTGGAGTTAAATCGAAGAGACTAATTCGACAATGGATAGCTGAAGGATTTGTGAAGGAGGAAGAGGGGAAGACTTTGGAAGAAGTTGCCGAAGGATACTTAAGTGAGTTGATTCATAGAAATTTAGTACAAGTATCTTCAGCTAGAATTGATGGAAAACCTAAATCTTGTCTTGTTCATGGTCGAATTCGTGAGATGATCCTTGAAAAGATTGATGATTTAGGCTTTTGCAAGCATATTAGTGAAGATGGACAGTCATCCTTAAATGAAACAGTTCGACGTCTATCGATAACAAGTACTTCCAATGCTTTAATGGGGCTTAATGGATGCTCACATGTTCGGTCACTGTTTATTTTTACAGATAAAGAATCACATGTAGACTTTGGTAGGAGAATCTTGACTAAATGCAAGTTGCTGAAAGTGCTTCATTTTGAAGATGCTCCACTGTTTAATATTCCTACAAATTTGGGAAGTTTGATCCACTTGAAGTATTTAAGGTTAAGGCATGGAAAGTTAGATAAACTTCCAAAATCCATTGGCATGCTCCAAAATCTAGAGACCTTGGATGTAAAGGGCACACATGTTCGTGTGTTGCCAAAGGAGATTAGTAAGCTTAAAAATCTACGACATCTTATCGGCTACCAATTATCTTTGATTCGATTGAAGGACAACATTGGAGGTATGAAATCCCTACAAACACTATTTTATGTTGATTTAAATGTGGATGGAGTAGTAAAACTAATTGCAGAGCTAGGAAAATTGAAGCAGTTAAAGGGATTGGGTTTGGTTCAAGTTGGGAGAGAACCTGGTATGACTTTATTTTCCTCGTTGAATGAGATGCAACACTTGGAGAAGCTAAATATTGAATCGCAATTGACAAGTAATGATGACATCATTGATTTGAATTTGATTTCACCTGCACCTATGCTTCAAATTCTTAGACTACATGCAAGGTTAGAGAAGTTGCCAGAGTGGATTCCTAAGCTTCAAAATGTTGTTCAATTGAAGTTGGCATTCTCCCATTTAAATGAAGATCCAATAAAATCACTACAAAGTTTGCAAAACCTGTTGTCCCTCTCTATCATTGACTATGCTTATGAAGGCGAAAGTTTGCAATTCCAAAATGGAGGGTTTCAGAAACTAAAAGAACTATTCCTTGCTCAAATGAAGAACTTGAATTCAATTGTTATCGAAAAAGGAGCACTGTTTTCACTCAAAAAGCTGGAGTTACGAAGTGTTCCACAACTGGAGGTTGTACCCACTGGCATTCAGAACTTAGAGAAGCTTCAAGTTCTCAGTATTTGGGATATGCATGCTATATTTGTGCACGGGATTGCGGTTGTCGAGCATGTTCCCCTCGTAGAAATTGATGGAGATGTCTTTCGACACTCAAGAAGTGCGGCTTCAAGTGCAATGACAATTCCGATTTTCCAAAGGGACTTTGGCACTTCGATTACTCTGTAA

Protein sequence

>Msa0502340

MAEIAVSLAIDQLLPVLTQETKLLKGVREEFSDIKDELESIHAFLKDADKRAVAKGDKNDEGVKIWVKQVREAAYRIEDIIDDYLIQVGQHPRNRGCVSLLKTMAPRRRIAHEIQDIKSFVCEIATRSKRYGFQLYSAVGSNCSTVSLNAKWHDPRLAALYMDEDEVMCFEDSRDELTDWLVKGREERTVISLVAMGGQGKTTLAKKVFESKEIIRHFEDCRVWIKVSRSYTVKRLLRDMLCKLGCTNPLDISIMDRESLINEVRNYLQQKRYLIVFDDVWNVHFWDDIEFAVIDNKKRSRIFMTTRNMSVVMSCKKSSFVKVHELQPLTEEQSLKLFNKKAFQFDYDGCCPKDLIGISSKIVRKCKGLPLAIVVIGSLLSSKEKDLFEWQMFCENLSLELKQDSHLIGIKKILGYSYDELPYNLKSCLLYLGIYPDGCGVKSKRLIRQWIAEGFVKEEEGKTLEEVAEGYLSELIHRNLVQVSSARIDGKPKSCLVHGRIREMILEKIDDLGFCKHISEDGQSSLNETVRRLSITSTSNALMGLNGCSHVRSLFIFTDKESHVDFGRRILTKCKLLKVLHFEDAPLFNIPTNLGSLIHLKYLRLRHGKLDKLPKSIGMLQNLETLDVKGTHVRVLPKEISKLKNLRHLIGYQLSLIRLKDNIGGMKSLQTLFYVDLNVDGVVKLIAELGKLKQLKGLGLVQVGREPGMTLFSSLNEMQHLEKLNIESQLTSNDDIIDLNLISPAPMLQILRLHARLEKLPEWIPKLQNVVQLKLAFSHLNEDPIKSLQSLQNLLSLSIIDYAYEGESLQFQNGGFQKLKELFLAQMKNLNSIVIEKGALFSLKKLELRSVPQLEVVPTGIQNLEKLQVLSIWDMHAIFVHGIAVVEHVPLVEIDGDVFRHSRSAASSAMTIPIFQRDFGTSITL*