AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122180 MtrunA17_Chr1g0181901 90.842 404 8 2 1 375 1 404 0.0 735
Msa0122180 MtrunA17_Chr7g0263281 77.540 374 79 1 1 374 1 369 0.0 591
Msa0122180 MtrunA17_Chr1g0213351 62.634 372 128 3 1 371 9 370 6.65e-170 479
Msa0122180 MtrunA17_Chr7g0250061 66.197 355 119 1 18 371 18 372 8.80e-168 474
Msa0122180 MtrunA17_Chr1g0211251 61.559 372 140 2 1 371 8 377 1.59e-164 466
Msa0122180 MtrunA17_Chr8g0371321 63.324 349 127 1 24 371 27 375 6.80e-164 464
Msa0122180 MtrunA17_Chr2g0294291 56.065 371 150 4 1 368 8 368 6.68e-146 417
Msa0122180 MtrunA17_Chr1g0175381 50.938 373 169 4 1 369 8 370 3.14e-129 376
Msa0122180 MtrunA17_Chr1g0207571 54.985 331 139 2 24 352 17 339 1.22e-121 356
Msa0122180 MtrunA17_Chr3g0089711 46.914 324 157 6 34 351 33 347 4.83e-97 293
Msa0122180 MtrunA17_Chr3g0089721 46.914 324 157 6 34 351 33 347 9.63e-97 292
Msa0122180 MtrunA17_Chr7g0256751 48.000 325 152 7 34 351 34 348 8.37e-91 280
Msa0122180 MtrunA17_Chr7g0256771 44.853 272 139 4 34 303 35 297 5.67e-72 227
Msa0122180 MtrunA17_Chr3g0089691 46.559 247 125 3 110 351 17 261 3.85e-71 224
Msa0122180 MtrunA17_Chr4g0063111 36.858 331 190 6 27 353 34 349 1.38e-62 209
Msa0122180 MtrunA17_Chr4g0063051 34.545 330 170 12 30 353 22 311 8.11e-46 160
Msa0122180 MtrunA17_Chr7g0238501 30.100 299 180 6 75 354 262 550 4.77e-41 152
Msa0122180 MtrunA17_Chr4g0039061 31.148 305 182 7 75 365 201 491 1.91e-39 146
Msa0122180 MtrunA17_Chr2g0295991 30.696 316 173 6 76 350 166 476 9.62e-39 144
Msa0122180 MtrunA17_Chr4g0031521 32.852 277 144 5 115 354 428 699 2.69e-37 142
Msa0122180 MtrunA17_Chr4g0067301 33.469 245 149 4 115 350 248 487 1.02e-35 136
Msa0122180 MtrunA17_Chr7g0256761 40.609 197 94 5 164 355 7 185 9.96e-35 126
Msa0122180 MtrunA17_Chr1g0193691 29.801 302 147 5 113 354 591 887 7.34e-34 133
Msa0122180 MtrunA17_Chr4g0054811 29.206 315 164 6 101 361 469 778 1.71e-32 129
Msa0122180 MtrunA17_Chr3g0105371 29.268 287 147 8 69 354 111 342 1.24e-27 111
Msa0122180 MtrunA17_Chr5g0430481 30.769 247 122 7 76 314 154 359 1.81e-27 111
Msa0122180 MtrunA17_Chr3g0105351 29.123 285 146 9 69 352 87 316 9.07e-27 108
Msa0122180 MtrunA17_Chr5g0407161 29.787 282 127 9 76 348 124 343 1.43e-24 103
Msa0122180 MtrunA17_Chr1g0150451 30.224 268 137 8 52 315 88 309 2.08e-23 99.8
Msa0122180 MtrunA17_Chr3g0136711 28.179 291 159 8 52 338 45 289 3.29e-23 98.2
Msa0122180 MtrunA17_Chr1g0212961 29.278 263 138 8 52 313 106 321 5.61e-23 98.6
Msa0122180 MtrunA17_Chr4g0062951 32.609 184 114 5 110 284 1 183 1.19e-22 94.0
Msa0122180 MtrunA17_Chr4g0050381 29.682 283 150 10 40 319 30 266 3.62e-22 95.1
Msa0122180 MtrunA17_Chr2g0317021 27.900 319 161 11 35 350 80 332 1.28e-21 94.4
Msa0122180 MtrunA17_Chr5g0426141 28.481 316 156 12 36 348 31 279 1.36e-21 93.6
Msa0122180 MtrunA17_Chr3g0115851 27.532 316 159 10 36 348 31 279 1.68e-21 93.2
Msa0122180 MtrunA17_Chr2g0279151 29.555 247 130 8 76 319 65 270 2.87e-21 92.4
Msa0122180 MtrunA17_Chr1g0171571 29.720 286 129 13 77 350 419 644 1.54e-20 93.6
Msa0122180 MtrunA17_Chr3g0126511 26.210 248 132 7 53 296 106 306 4.28e-20 90.5
Msa0122180 MtrunA17_Chr3g0144111 28.276 290 120 8 66 348 17 225 1.61e-19 87.0
Msa0122180 MtrunA17_Chr4g0070871 28.980 245 120 6 65 296 242 445 7.58e-19 87.8
Msa0122180 MtrunA17_Chr3g0135961 27.586 290 159 9 76 350 286 539 1.54e-18 87.0
Msa0122180 MtrunA17_Chr8g0360351 26.498 317 164 12 35 348 29 279 5.72e-18 83.2
Msa0122180 MtrunA17_Chr1g0194191 29.151 271 132 12 67 315 103 335 1.55e-17 83.2
Msa0122180 MtrunA17_Chr4g0001761 25.887 282 143 9 57 298 33 288 3.24e-17 82.0
Msa0122180 MtrunA17_Chr2g0293811 27.551 294 136 10 75 351 99 332 3.25e-17 82.0
Msa0122180 MtrunA17_Chr3g0112291 25.253 297 156 9 76 350 123 375 1.35e-16 80.5
Msa0122180 MtrunA17_Chr3g0138281 27.341 267 143 10 60 315 105 331 1.72e-16 80.1
Msa0122180 MtrunA17_Chr4g0051661 26.165 279 135 11 49 313 160 381 1.81e-16 80.1
Msa0122180 MtrunA17_Chr5g0435721 26.809 235 127 6 73 297 220 419 7.76e-16 79.0
Msa0122180 MtrunA17_Chr4g0065141 27.500 280 143 9 75 348 123 348 1.44e-15 77.4
Msa0122180 MtrunA17_Chr3g0136811 24.823 282 146 9 57 298 33 288 1.69e-15 77.0
Msa0122180 MtrunA17_Chr1g0158781 27.215 316 184 10 40 354 113 383 1.82e-15 77.0
Msa0122180 MtrunA17_Chr1g0150071 25.095 263 131 8 75 297 51 287 3.76e-15 75.9
Msa0122180 MtrunA17_Chr7g0272061 26.198 313 159 12 76 354 91 365 9.99e-15 74.7
Msa0122180 MtrunA17_Chr1g0150781 27.181 298 159 12 72 350 285 543 1.19e-14 75.5
Msa0122180 MtrunA17_Chr7g0223641 27.354 223 117 6 140 350 7 196 2.06e-14 71.6
Msa0122180 MtrunA17_Chr7g0221691 29.825 285 144 16 68 314 120 386 8.73e-13 69.3
Msa0122180 MtrunA17_Chr3g0127091 27.236 246 141 9 75 300 88 315 1.10e-12 68.9
Msa0122180 MtrunA17_Chr4g0067711 28.929 280 132 14 76 321 91 337 2.13e-12 67.8
Msa0122180 MtrunA17_Chr2g0295401 28.477 302 147 12 78 351 94 354 5.15e-12 66.6
Msa0122180 MtrunA17_Chr8g0389921 27.181 298 164 12 63 353 186 437 7.51e-12 66.6
Msa0122180 MtrunA17_Chr6g0483411 27.519 258 136 9 77 316 80 304 1.14e-11 65.1
Msa0122180 MtrunA17_Chr1g0192421 27.575 301 155 14 76 351 89 351 2.00e-11 64.7
Msa0122180 MtrunA17_Chr8g0342431 30.723 166 85 5 157 315 210 352 3.28e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122180 AT3G12620.2 66.667 372 120 2 1 371 10 378 0.0 514
Msa0122180 AT3G12620.1 66.667 372 120 2 1 371 10 378 0.0 514
Msa0122180 AT3G55050.1 63.612 371 131 1 1 371 9 375 1.58e-179 504
Msa0122180 AT3G55050.2 63.612 371 131 1 1 371 9 375 1.58e-179 504
Msa0122180 AT3G51370.1 65.805 348 117 1 24 371 27 372 7.81e-174 489
Msa0122180 AT3G51370.3 65.805 348 117 1 24 371 27 372 7.81e-174 489
Msa0122180 AT5G66080.1 65.714 350 118 2 24 371 29 378 2.01e-171 483
Msa0122180 AT4G38520.2 60.484 372 144 2 1 371 8 377 1.12e-165 469
Msa0122180 AT4G38520.1 60.484 372 144 2 1 371 8 377 1.12e-165 469
Msa0122180 AT5G02760.1 60.811 370 138 3 1 370 1 363 1.23e-155 442
Msa0122180 AT3G17090.1 59.451 328 123 3 29 355 45 363 7.44e-137 395
Msa0122180 AT5G66080.2 66.296 270 90 1 103 371 5 274 8.54e-131 376
Msa0122180 AT3G51370.2 65.056 269 92 1 103 371 21 287 1.00e-129 374
Msa0122180 AT5G06750.3 52.035 344 154 2 29 369 43 378 4.55e-122 358
Msa0122180 AT5G06750.1 52.035 344 154 2 29 369 43 378 4.55e-122 358
Msa0122180 AT4G33920.1 50.420 357 161 4 21 373 14 358 9.08e-115 339
Msa0122180 AT3G17090.2 56.569 274 109 3 29 301 45 309 2.08e-106 315
Msa0122180 AT5G06750.2 52.963 270 124 1 103 369 27 296 1.06e-94 285
Msa0122180 AT4G33920.2 50.903 277 130 2 100 373 2 275 3.32e-89 271
Msa0122180 AT4G33920.3 51.210 248 115 2 129 373 1 245 8.19e-80 246
Msa0122180 AT3G16560.1 29.808 312 176 7 76 350 175 480 2.04e-38 144
Msa0122180 AT3G16560.4 29.808 312 176 7 76 350 175 480 2.04e-38 144
Msa0122180 AT3G16560.2 29.808 312 176 7 76 350 175 480 2.04e-38 144
Msa0122180 AT3G09400.1 32.979 282 143 8 115 365 384 650 6.38e-38 144
Msa0122180 AT5G02400.1 32.509 283 146 6 117 365 403 674 5.45e-37 142
Msa0122180 AT1G07630.1 31.769 277 147 5 115 354 386 657 9.53e-37 141
Msa0122180 AT2G28890.1 31.655 278 148 5 114 354 377 649 1.91e-36 140
Msa0122180 AT2G46920.3 29.470 302 147 5 114 354 543 839 3.99e-35 137
Msa0122180 AT2G46920.1 29.470 302 147 5 114 354 543 839 3.99e-35 137
Msa0122180 AT2G46920.2 29.470 302 147 5 114 354 543 839 3.99e-35 137
Msa0122180 AT2G46920.4 29.470 302 147 5 114 354 543 839 3.99e-35 137
Msa0122180 AT1G07160.1 32.862 283 135 8 72 352 149 378 1.66e-33 128
Msa0122180 AT2G35350.1 29.293 297 154 6 114 364 493 779 8.27e-33 130
Msa0122180 AT3G16560.3 29.078 282 157 7 76 320 175 450 2.13e-29 118
Msa0122180 AT2G40180.1 29.412 289 144 9 71 354 156 389 6.83e-28 113
Msa0122180 AT3G09400.2 32.068 237 121 7 115 320 384 611 1.15e-27 115
Msa0122180 AT2G30020.1 30.742 283 134 9 75 352 169 394 3.38e-27 111
Msa0122180 AT1G67820.2 33.480 227 108 5 73 297 112 297 6.89e-26 108
Msa0122180 AT1G67820.1 33.480 227 108 5 73 297 148 333 8.01e-26 108
Msa0122180 AT4G31750.2 30.996 271 138 8 52 318 44 269 1.66e-25 105
Msa0122180 AT4G31750.1 30.996 271 138 8 52 318 44 269 2.06e-25 105
Msa0122180 AT4G31750.3 30.996 271 138 8 52 318 44 269 2.06e-25 105
Msa0122180 AT3G51470.2 31.727 249 124 7 74 315 60 269 8.97e-25 103
Msa0122180 AT3G51470.1 31.727 249 124 7 74 315 104 313 1.41e-24 103
Msa0122180 AT2G33700.1 31.973 294 127 9 68 348 109 342 3.86e-24 102
Msa0122180 AT5G10740.1 29.225 284 149 9 36 315 30 265 3.85e-22 96.7
Msa0122180 AT5G10740.2 29.225 284 149 9 36 315 30 265 3.85e-22 96.7
Msa0122180 AT1G43900.1 30.714 280 130 11 71 348 149 366 4.83e-22 96.7
Msa0122180 AT4G28400.3 28.205 273 150 10 49 319 22 250 8.33e-22 94.0
Msa0122180 AT4G28400.1 28.205 273 150 10 49 319 44 272 1.45e-21 94.0
Msa0122180 AT5G24940.1 28.689 244 128 7 76 315 64 265 4.70e-21 94.7
Msa0122180 AT2G20630.1 27.985 268 147 10 49 314 40 263 2.73e-20 90.1
Msa0122180 AT2G20630.2 27.985 268 147 10 49 314 40 263 5.45e-20 89.4
Msa0122180 AT3G62260.3 31.660 259 130 9 69 314 20 244 6.51e-20 89.4
Msa0122180 AT3G62260.1 31.274 259 131 9 69 314 109 333 2.30e-19 89.0
Msa0122180 AT3G62260.2 31.274 259 131 9 69 314 110 334 2.43e-19 89.0
Msa0122180 AT5G53140.1 24.150 294 158 8 76 366 132 363 3.12e-19 89.0
Msa0122180 AT5G53140.2 24.150 294 158 8 76 366 132 363 3.12e-19 89.0
Msa0122180 AT1G78200.1 27.097 310 163 11 40 348 33 280 4.64e-19 86.7
Msa0122180 AT1G78200.3 27.097 310 163 11 40 348 33 280 4.64e-19 86.7
Msa0122180 AT1G78200.2 27.097 310 163 11 40 348 33 280 4.64e-19 86.7
Msa0122180 AT1G34750.2 26.861 309 161 11 43 350 37 281 9.05e-19 85.9
Msa0122180 AT1G34750.1 26.861 309 161 11 43 350 37 281 9.05e-19 85.9
Msa0122180 AT1G34750.3 26.861 309 161 11 43 350 37 281 9.05e-19 85.9
Msa0122180 AT3G15260.2 28.013 307 156 11 43 348 44 286 4.42e-18 84.0
Msa0122180 AT3G15260.1 28.013 307 156 11 43 348 44 286 4.42e-18 84.0
Msa0122180 AT4G26080.1 26.144 306 176 10 62 353 156 425 5.48e-18 85.5
Msa0122180 AT1G22280.3 27.645 293 161 10 34 319 28 276 6.15e-18 83.6
Msa0122180 AT4G08260.1 26.756 299 130 11 54 352 1 210 9.41e-18 81.6
Msa0122180 AT2G25620.1 27.157 313 166 13 48 350 96 356 1.32e-17 84.0
Msa0122180 AT2G25620.2 27.157 313 166 13 48 350 96 356 1.32e-17 84.0
Msa0122180 AT2G25070.1 25.887 282 143 9 57 298 33 288 2.03e-17 83.2
Msa0122180 AT2G25070.2 25.887 282 143 9 57 298 33 288 2.03e-17 83.2
Msa0122180 AT1G78200.5 26.502 283 150 9 67 348 10 235 2.74e-17 80.9
Msa0122180 AT1G78200.4 26.502 283 150 9 67 348 10 235 2.74e-17 80.9
Msa0122180 AT1G22280.1 27.431 288 162 9 34 319 28 270 5.59e-17 80.9
Msa0122180 AT4G31860.3 25.795 283 142 10 57 298 33 288 1.92e-16 79.3
Msa0122180 AT2G40860.4 28.622 283 137 11 76 350 325 550 3.49e-16 80.5
Msa0122180 AT1G07430.1 26.180 233 126 7 76 297 157 354 3.62e-16 80.1
Msa0122180 AT2G40860.1 28.622 283 137 11 76 350 423 648 5.89e-16 80.1
Msa0122180 AT4G31860.1 25.795 283 142 10 57 298 33 288 7.62e-16 78.6
Msa0122180 AT1G48040.1 27.019 322 163 12 44 348 81 347 1.60e-15 77.8
Msa0122180 AT2G34740.1 27.016 248 132 11 49 293 96 297 2.11e-15 77.0
Msa0122180 AT2G29380.1 27.917 240 119 9 72 296 109 309 2.68e-15 77.0
Msa0122180 AT1G72770.4 27.469 324 144 13 66 350 230 501 2.99e-15 77.4
Msa0122180 AT1G72770.1 27.469 324 144 13 66 350 230 501 2.99e-15 77.4
Msa0122180 AT1G72770.3 27.469 324 144 13 66 350 230 501 2.99e-15 77.4
Msa0122180 AT2G40860.2 28.800 250 133 10 76 316 423 636 3.37e-15 77.4
Msa0122180 AT4G28400.2 27.615 239 128 9 49 286 44 238 3.88e-15 75.1
Msa0122180 AT5G51760.2 28.750 240 120 7 76 296 114 321 4.06e-15 76.6
Msa0122180 AT5G51760.1 28.750 240 120 7 76 296 144 351 4.86e-15 76.6
Msa0122180 AT5G27930.1 26.733 303 152 15 76 349 92 353 5.50e-15 75.9
Msa0122180 AT5G27930.2 26.733 303 152 15 76 349 92 353 5.50e-15 75.9
Msa0122180 AT1G17550.1 26.971 241 123 8 76 295 237 445 6.13e-15 76.6
Msa0122180 AT1G17550.2 26.971 241 123 8 76 295 237 445 6.13e-15 76.6
Msa0122180 AT3G05640.2 27.946 297 154 12 76 351 93 350 7.80e-15 75.5
Msa0122180 AT3G05640.1 27.946 297 154 12 76 351 93 350 7.80e-15 75.5
Msa0122180 AT3G05640.3 27.946 297 154 12 76 351 93 350 7.80e-15 75.5
Msa0122180 AT5G59220.1 27.706 231 122 7 76 297 148 342 9.03e-15 75.5
Msa0122180 AT5G57050.2 24.561 285 174 8 76 351 120 372 1.04e-14 75.5
Msa0122180 AT5G57050.1 24.561 285 174 8 76 351 160 412 1.05e-14 75.5
Msa0122180 AT3G17250.1 27.076 277 139 12 67 319 142 379 3.24e-14 73.9
Msa0122180 AT4G31860.2 26.296 270 131 10 57 285 33 275 4.56e-14 72.4
Msa0122180 AT3G16800.2 27.119 295 158 10 75 350 92 348 4.75e-14 73.2
Msa0122180 AT3G16800.1 27.119 295 158 10 75 350 92 348 4.75e-14 73.2
Msa0122180 AT3G16800.3 27.119 295 158 10 75 350 92 348 4.75e-14 73.2
Msa0122180 AT5G26010.1 28.231 294 156 13 76 353 73 327 9.86e-14 72.0
Msa0122180 AT2G34740.2 26.556 241 128 11 49 286 110 304 1.42e-13 71.2
Msa0122180 AT2G34740.3 26.556 241 128 11 49 286 92 286 1.72e-13 70.9
Msa0122180 AT1G34750.4 25.306 245 138 7 43 286 37 237 4.66e-13 68.9
Msa0122180 AT5G01700.2 24.834 302 164 13 76 353 78 340 7.56e-13 69.7
Msa0122180 AT5G01700.1 24.834 302 164 13 76 353 29 291 7.95e-13 69.3
Msa0122180 AT4G32950.1 26.756 299 164 13 69 353 62 319 1.25e-12 68.6
Msa0122180 AT3G16800.4 28.448 232 124 7 127 350 56 253 7.31e-12 65.5
Msa0122180 AT3G16800.6 28.448 232 124 7 127 350 56 253 7.31e-12 65.5

Find 97 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTATGGTACAAAGATTT+AGG 0.145257 1_3:-48517347 Msa0122180:CDS
GATTTAGGGAACCATATTTA+TGG 0.226833 1_3:-48517332 Msa0122180:CDS
TTGAAAATTCACCATAAATA+TGG 0.240008 1_3:+48517321 None:intergenic
ACCTTTGAGTTCTAACCATT+TGG 0.248033 1_3:-48517243 Msa0122180:CDS
TATTTGCTTCTGATGGGTTA+TGG 0.270609 1_3:-48515917 Msa0122180:CDS
TGATAGATAACAGCTCTCTT+TGG 0.300674 1_3:-48515211 Msa0122180:CDS
ATTTGCTTCTGATGGGTTAT+GGG 0.319833 1_3:-48515916 Msa0122180:CDS
GATAGATAACAGCTCTCTTT+GGG 0.319974 1_3:-48515210 Msa0122180:CDS
TGAAGAAAGCAGAATTCAAT+AGG 0.336510 1_3:-48516049 Msa0122180:CDS
CTGCTATATATTGCAAATTC+TGG 0.336609 1_3:-48516404 Msa0122180:CDS
CCTTTGAGTTCTAACCATTT+GGG 0.343999 1_3:-48517242 Msa0122180:CDS
ACCAAATTTGTACCTGTATG+AGG 0.357900 1_3:+48516207 None:intergenic
CAGAAGCAAATATGAGAAAT+TGG 0.359419 1_3:+48515928 None:intergenic
TGTTATGGTACAAAGATTTA+GGG 0.362538 1_3:-48517346 Msa0122180:CDS
GGGAGTGGTGGGAGAGTTGA+TGG 0.367545 1_3:-48517371 Msa0122180:CDS
ACAATTGTCTAAAATTTGAT+TGG 0.372658 1_3:+48515067 None:intergenic
GTTCATCTCTCACTCTTTCA+AGG 0.384829 1_3:+48516297 None:intergenic
TCAGCAAGTCTGAACTTTGA+TGG 0.386663 1_3:+48516017 None:intergenic
TTTCTCATATTTGCTTCTGA+TGG 0.398381 1_3:-48515924 Msa0122180:CDS
AATATGAGAAATTGGTCATC+TGG 0.401453 1_3:+48515936 None:intergenic
ATCAGCAGGTACTTGTTGTT+TGG 0.418296 1_3:-48516447 Msa0122180:CDS
GATGGCTCACAGCTAAGAAT+TGG 0.420072 1_3:+48515981 None:intergenic
GATGGGAGTGGAAGTGGGAG+TGG 0.421706 1_3:-48517386 Msa0122180:CDS
AGCAGGTACTTGTTGTTTGG+TGG 0.424999 1_3:-48516444 Msa0122180:CDS
ACCACAATTTGTGAATCATA+AGG 0.427794 1_3:+48516260 None:intergenic
TGTCGGAAAATGTGATCAAA+AGG 0.429591 1_3:-48516541 Msa0122180:CDS
GATGGAGATGGGAGTGGAAG+TGG 0.429908 1_3:-48517392 Msa0122180:CDS
GATTCAAGCTAATAGTTCAT+TGG 0.431739 1_3:-48517291 Msa0122180:CDS
CCCTTATGATTCACAAATTG+TGG 0.437712 1_3:-48516261 Msa0122180:CDS
GGTGACTCAAGGGTGGTGTT+AGG 0.443325 1_3:-48516383 Msa0122180:CDS
GCAGGTACTTGTTGTTTGGT+GGG 0.444107 1_3:-48516443 Msa0122180:CDS
ATGAAGTTTATGTGATGAAA+TGG 0.445727 1_3:+48515959 None:intergenic
TAATCCACCAGATCATAAAC+TGG 0.453417 1_3:+48514979 None:intergenic
GATAGAAGTGAATTTGAGTC+TGG 0.454463 1_3:-48517266 Msa0122180:CDS
CCACAATTTGTGAATCATAA+GGG 0.455049 1_3:+48516261 None:intergenic
GTTCTGTCCAGTTTATGATC+TGG 0.459600 1_3:-48514986 Msa0122180:three_prime_UTR
GGGAGTGGAAGTGGGAGTGG+TGG 0.471115 1_3:-48517383 Msa0122180:CDS
TCTCTTTCAATCAAAGGAGG+TGG 0.472096 1_3:-48515182 Msa0122180:CDS
TTCTCATATTTGCTTCTGAT+GGG 0.482026 1_3:-48515923 Msa0122180:CDS
GGAGAGTTGATGGATTGTTA+TGG 0.482127 1_3:-48517361 Msa0122180:CDS
AAAAGATGGTGAGATCTTGC+TGG 0.490229 1_3:-48517436 None:intergenic
GGGCTTGCAGCTGAAAATCA+AGG 0.497382 1_3:-48516566 Msa0122180:CDS
CACAATGTTTGGCGTGTCAA+AGG 0.498022 1_3:-48516230 Msa0122180:CDS
GGAGTGGAAGTGGGAGTGGT+GGG 0.499352 1_3:-48517382 Msa0122180:CDS
ATGTTCTGCAGATAATTGTA+TGG 0.500987 1_3:+48516328 None:intergenic
TTGCAGGTTTCGCGATCGAT+CGG 0.503749 1_3:-48516083 Msa0122180:intron
AAATGAAGCCTTACATTAGG+TGG 0.504260 1_3:+48515849 None:intergenic
TGGTTATGAGACACAATGTT+TGG 0.504918 1_3:-48516241 Msa0122180:CDS
TGATGAATCAATTTAGTGAT+TGG 0.507013 1_3:+48515154 None:intergenic
CCATCATCACCATCTGCAGC+TGG 0.507878 1_3:+48517410 None:intergenic
TTGCAAATTCTGGTGACTCA+AGG 0.512676 1_3:-48516394 Msa0122180:CDS
AGCTGAAAATCAAGGCTTGT+CGG 0.513050 1_3:-48516558 Msa0122180:CDS
ATTGGTGTTTATGATGGTCA+TGG 0.514731 1_3:-48517203 Msa0122180:CDS
GGTTCTTCTCTTTCAATCAA+AGG 0.518546 1_3:-48515188 Msa0122180:CDS
CAGGTACTTGTTGTTTGGTG+GGG 0.520451 1_3:-48516442 Msa0122180:CDS
CCAGCTGCAGATGGTGATGA+TGG 0.524607 1_3:-48517410 Msa0122180:CDS
CTGTCCAGTTTATGATCTGG+TGG 0.527868 1_3:-48514983 Msa0122180:three_prime_UTR
TGCAAATTCTGGTGACTCAA+GGG 0.528408 1_3:-48516393 Msa0122180:CDS
GAAGAAAGCAGAATTCAATA+GGG 0.530148 1_3:-48516048 Msa0122180:CDS
ATGGAGATGGGAGTGGAAGT+GGG 0.535272 1_3:-48517391 Msa0122180:CDS
AAGTCCCTTGAGGACCCAAA+TGG 0.544433 1_3:+48517228 None:intergenic
TCTAACCATTTGGGTCCTCA+AGG 0.545656 1_3:-48517233 Msa0122180:CDS
TGCTGGAAGCCAGCTGCAGA+TGG 0.549950 1_3:-48517419 Msa0122180:CDS
GCGTGTCAAAGGCCTCATAC+AGG 0.554102 1_3:-48516219 Msa0122180:intron
GGTGATGATGGAGATGGGAG+TGG 0.556141 1_3:-48517398 Msa0122180:CDS
AAACTGGACAGAACAAGGTA+GGG 0.557135 1_3:+48514995 None:intergenic
TCAAGCTAATAGTTCATTGG+AGG 0.562094 1_3:-48517288 Msa0122180:CDS
TAAACTGGACAGAACAAGGT+AGG 0.564051 1_3:+48514994 None:intergenic
CAGCCACATATTGCATCAGC+AGG 0.566567 1_3:-48516461 Msa0122180:CDS
CAATCACAGTTATATCATCA+TGG 0.569267 1_3:+48515255 None:intergenic
ATCATAAACTGGACAGAACA+AGG 0.576122 1_3:+48514990 None:intergenic
GTCGGAAAATGTGATCAAAA+GGG 0.584435 1_3:-48516540 Msa0122180:CDS
TCTTCTCTTTCAATCAAAGG+AGG 0.590775 1_3:-48515185 Msa0122180:CDS
AAGACTAGAGAGGGCAACAA+GGG 0.596221 1_3:-48516360 Msa0122180:CDS
GCAGATGGTGATGATGGAGA+TGG 0.599305 1_3:-48517404 Msa0122180:CDS
CTAACCATTTGGGTCCTCAA+GGG 0.601292 1_3:-48517232 Msa0122180:CDS
GACCTTCAAAAGATTGAACA+AGG 0.610876 1_3:-48515293 Msa0122180:CDS
AGTCTGAACTTTGATGGTAG+AGG 0.612065 1_3:+48516023 None:intergenic
GAAGACTAGAGAGGGCAACA+AGG 0.614407 1_3:-48516361 Msa0122180:CDS
CCCAAATGGTTAGAACTCAA+AGG 0.617302 1_3:+48517242 None:intergenic
AAAAGATTGAACAAGGGACA+AGG 0.617420 1_3:-48515286 Msa0122180:CDS
AACTGGACAGAACAAGGTAG+GGG 0.621101 1_3:+48514996 None:intergenic
GGTGTTAGGAAGACTAGAGA+GGG 0.624868 1_3:-48516369 Msa0122180:CDS
CAGATGGTGATGATGGAGAT+GGG 0.625666 1_3:-48517403 Msa0122180:CDS
TTGGTGGGGATAATTTGCAA+TGG 0.626466 1_3:-48516428 Msa0122180:CDS
CAGCACTCAGAGAAGCAGCA+AGG 0.626568 1_3:-48515337 Msa0122180:CDS
ATAGATAACAGCTCTCTTTG+GGG 0.632184 1_3:-48515209 Msa0122180:CDS
TGGTGTTAGGAAGACTAGAG+AGG 0.638450 1_3:-48516370 Msa0122180:CDS
GGAGCAGCTTAGCAATCAAG+AGG 0.645253 1_3:-48515895 Msa0122180:CDS
TATCACTTGTGAATAAACAG+TGG 0.649816 1_3:-48516490 Msa0122180:CDS
GTACCTGCTGATGCAATATG+TGG 0.654955 1_3:+48516458 None:intergenic
GGTGTTTATGATGGTCATGG+TGG 0.668522 1_3:-48517200 Msa0122180:CDS
AGTTTATGTGATGAAATGGA+TGG 0.689072 1_3:+48515963 None:intergenic
ACACCAATAAAAGTCCCTTG+AGG 0.707591 1_3:+48517218 None:intergenic
ACCTTCAAAAGATTGAACAA+GGG 0.714290 1_3:-48515292 Msa0122180:CDS
AAATTCTGGTGACTCAAGGG+TGG 0.717797 1_3:-48516390 Msa0122180:CDS
ACTGGACAGAACAAGGTAGG+GGG 0.718372 1_3:+48514997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTGTATAAATGTTT+TGG + chr1_3:48515601-48515620 None:intergenic 10.0%
!! AATAATAAACTCAAAATAAA+GGG + chr1_3:48515705-48515724 None:intergenic 10.0%
!! TAATAATAAACTCAAAATAA+AGG + chr1_3:48515706-48515725 None:intergenic 10.0%
!! GTTCAAATAAATTAATTTAA+AGG + chr1_3:48516702-48516721 None:intergenic 10.0%
!!! TATATATATAAGATTTTCAA+TGG + chr1_3:48517396-48517415 None:intergenic 10.0%
!!! TATATATATGAATTTTTCTT+TGG - chr1_3:48517414-48517433 Msa0122180:CDS 10.0%
!! TATGAAAATCTATATAGTTA+TGG + chr1_3:48515216-48515235 None:intergenic 15.0%
!!! TATGTTTTCAAAATAATTGA+GGG - chr1_3:48515275-48515294 Msa0122180:CDS 15.0%
!!! TTTTTCTTTATTTTTTGTTG+AGG + chr1_3:48515643-48515662 None:intergenic 15.0%
!!! CAGGAATTATAAAATTTTTA+CGG + chr1_3:48516152-48516171 None:intergenic 15.0%
!!! ATGTAGTTTTGTAAATTTTA+AGG + chr1_3:48516209-48516228 None:intergenic 15.0%
!!! TTGTTTTTTTTTTTTTTGAG+AGG + chr1_3:48517278-48517297 None:intergenic 15.0%
!! TTGAAAATTCACCATAAATA+TGG + chr1_3:48514999-48515018 None:intergenic 20.0%
!!! TATTTATGGTGAATTTTCAA+TGG - chr1_3:48514999-48515018 Msa0122180:three_prime_UTR 20.0%
!!! TGAAATAGTTTTCTATATGT+TGG - chr1_3:48515243-48515262 Msa0122180:CDS 20.0%
!!! GTATGTTTTCAAAATAATTG+AGG - chr1_3:48515274-48515293 Msa0122180:CDS 20.0%
!! TTAATCTAATAGTCTATAGT+CGG - chr1_3:48515505-48515524 Msa0122180:intron 20.0%
!!! AATAAAGCATTTTATGTAAC+AGG - chr1_3:48516933-48516952 Msa0122180:intron 20.0%
!!! ATAAAGCATTTTATGTAACA+GGG - chr1_3:48516934-48516953 Msa0122180:intron 20.0%
!!! ACAATTGTCTAAAATTTGAT+TGG + chr1_3:48517253-48517272 None:intergenic 20.0%
! TTGTTATGGTACAAAGATTT+AGG - chr1_3:48514970-48514989 Msa0122180:three_prime_UTR 25.0%
! TGTTATGGTACAAAGATTTA+GGG - chr1_3:48514971-48514990 Msa0122180:three_prime_UTR 25.0%
!!! ACTTTTATTGGTGTTTATGA+TGG - chr1_3:48515108-48515127 Msa0122180:three_prime_UTR 25.0%
!! TAAAAAATCACTCAAGTTGT+TGG + chr1_3:48515423-48515442 None:intergenic 25.0%
! TAATCTAATAGTCTATAGTC+GGG - chr1_3:48515506-48515525 Msa0122180:intron 25.0%
!! AATAATCCTAGTAACCTTTT+AGG - chr1_3:48515617-48515636 Msa0122180:intron 25.0%
!!! GTAAATTTTAAGGACTAAAG+TGG + chr1_3:48516199-48516218 None:intergenic 25.0%
! ATGAAGTTTATGTGATGAAA+TGG + chr1_3:48516361-48516380 None:intergenic 25.0%
! ATAAAATGAAGCCTTACATT+AGG + chr1_3:48516474-48516493 None:intergenic 25.0%
!!! CATTTTATTTTTGCCATTCA+AGG - chr1_3:48516486-48516505 Msa0122180:CDS 25.0%
! ATGATAACAATAACCTTGAA+TGG + chr1_3:48516502-48516521 None:intergenic 25.0%
! ACAACTTAAGGATATATCAT+CGG + chr1_3:48516750-48516769 None:intergenic 25.0%
!!! GTTGTTTTCATTACTTATCA+TGG + chr1_3:48516797-48516816 None:intergenic 25.0%
! ATAATCACTTATCATGTAAG+TGG + chr1_3:48516882-48516901 None:intergenic 25.0%
! TGATGAATCAATTTAGTGAT+TGG + chr1_3:48517166-48517185 None:intergenic 25.0%
!! GAACATATATTTTGTACAGA+TGG - chr1_3:48517365-48517384 Msa0122180:CDS 25.0%
!! ATTTTTCTTTGGCAAAAGTA+AGG - chr1_3:48517425-48517444 Msa0122180:CDS 25.0%
GATTTAGGGAACCATATTTA+TGG - chr1_3:48514985-48515004 Msa0122180:three_prime_UTR 30.0%
GATTCAAGCTAATAGTTCAT+TGG - chr1_3:48515026-48515045 Msa0122180:three_prime_UTR 30.0%
TTTCAAAATAATTGAGGGCT+AGG - chr1_3:48515280-48515299 Msa0122180:CDS 30.0%
TTCAAAATAATTGAGGGCTA+GGG - chr1_3:48515281-48515300 Msa0122180:CDS 30.0%
TTGGAATAAGACAAACAACT+TGG + chr1_3:48515404-48515423 None:intergenic 30.0%
!!! ATTTTTTGTTGAGGCCTAAA+AGG + chr1_3:48515634-48515653 None:intergenic 30.0%
! TCAATTTTCTTTGTGATCCA+GGG - chr1_3:48515731-48515750 Msa0122180:intron 30.0%
TATCACTTGTGAATAAACAG+TGG - chr1_3:48515827-48515846 Msa0122180:intron 30.0%
CTGCTATATATTGCAAATTC+TGG - chr1_3:48515913-48515932 Msa0122180:CDS 30.0%
ATGTTCTGCAGATAATTGTA+TGG + chr1_3:48515992-48516011 None:intergenic 30.0%
CCACAATTTGTGAATCATAA+GGG + chr1_3:48516059-48516078 None:intergenic 30.0%
ACCACAATTTGTGAATCATA+AGG + chr1_3:48516060-48516079 None:intergenic 30.0%
TGGATACAAAGACTAATAAC+AGG + chr1_3:48516171-48516190 None:intergenic 30.0%
TGAAGAAAGCAGAATTCAAT+AGG - chr1_3:48516268-48516287 Msa0122180:CDS 30.0%
GAAGAAAGCAGAATTCAATA+GGG - chr1_3:48516269-48516288 Msa0122180:CDS 30.0%
AGTTTATGTGATGAAATGGA+TGG + chr1_3:48516357-48516376 None:intergenic 30.0%
AATATGAGAAATTGGTCATC+TGG + chr1_3:48516384-48516403 None:intergenic 30.0%
CAGAAGCAAATATGAGAAAT+TGG + chr1_3:48516392-48516411 None:intergenic 30.0%
TTTCTCATATTTGCTTCTGA+TGG - chr1_3:48516393-48516412 Msa0122180:CDS 30.0%
TTCTCATATTTGCTTCTGAT+GGG - chr1_3:48516394-48516413 Msa0122180:CDS 30.0%
CTTTCACATTATTGCAAATC+TGG - chr1_3:48516527-48516546 Msa0122180:CDS 30.0%
TTAATCCGTCCAATTAAGAT+CGG + chr1_3:48516620-48516639 None:intergenic 30.0%
!! ATCGGTTGTTTTCATTGTAT+CGG + chr1_3:48516732-48516751 None:intergenic 30.0%
AATCAGCTGAAAACAACTTA+AGG + chr1_3:48516762-48516781 None:intergenic 30.0%
ACCTTCAAAAGATTGAACAA+GGG - chr1_3:48517025-48517044 Msa0122180:intron 30.0%
CAATCACAGTTATATCATCA+TGG + chr1_3:48517065-48517084 None:intergenic 30.0%
TCAAGCTAATAGTTCATTGG+AGG - chr1_3:48515029-48515048 Msa0122180:three_prime_UTR 35.0%
GATAGAAGTGAATTTGAGTC+TGG - chr1_3:48515051-48515070 Msa0122180:three_prime_UTR 35.0%
! ACCTTTGAGTTCTAACCATT+TGG - chr1_3:48515074-48515093 Msa0122180:three_prime_UTR 35.0%
! CCTTTGAGTTCTAACCATTT+GGG - chr1_3:48515075-48515094 Msa0122180:three_prime_UTR 35.0%
! ATTGGTGTTTATGATGGTCA+TGG - chr1_3:48515114-48515133 Msa0122180:three_prime_UTR 35.0%
AGGGAAATTTGTAGTCTCTT+CGG - chr1_3:48515300-48515319 Msa0122180:CDS 35.0%
CCTTTAGATTAATCCAACGA+CGG + chr1_3:48515334-48515353 None:intergenic 35.0%
TTAATCTAAAGGCTCGTGTT+TGG - chr1_3:48515342-48515361 Msa0122180:CDS 35.0%
AATCTAACAATCTACACAGC+CGG + chr1_3:48515463-48515482 None:intergenic 35.0%
! GTCAATTTTCTTTGTGATCC+AGG - chr1_3:48515730-48515749 Msa0122180:intron 35.0%
TGTCGGAAAATGTGATCAAA+AGG - chr1_3:48515776-48515795 Msa0122180:intron 35.0%
GTCGGAAAATGTGATCAAAA+GGG - chr1_3:48515777-48515796 Msa0122180:intron 35.0%
CCCTTATGATTCACAAATTG+TGG - chr1_3:48516056-48516075 Msa0122180:CDS 35.0%
TGGTTATGAGACACAATGTT+TGG - chr1_3:48516076-48516095 Msa0122180:CDS 35.0%
ACCAAATTTGTACCTGTATG+AGG + chr1_3:48516113-48516132 None:intergenic 35.0%
TAAGGACTAAAGTGGAATAG+TGG + chr1_3:48516191-48516210 None:intergenic 35.0%
!! CAAAACTACATGCTTTTTGC+AGG - chr1_3:48516218-48516237 Msa0122180:intron 35.0%
!! TATTTGCTTCTGATGGGTTA+TGG - chr1_3:48516400-48516419 Msa0122180:CDS 35.0%
!! ATTTGCTTCTGATGGGTTAT+GGG - chr1_3:48516401-48516420 Msa0122180:CDS 35.0%
ACAACAATCCACCTAATGTA+AGG - chr1_3:48516460-48516479 Msa0122180:CDS 35.0%
AAATGAAGCCTTACATTAGG+TGG + chr1_3:48516471-48516490 None:intergenic 35.0%
ACTGTTCGATCAAGATTTGA+CGG + chr1_3:48516554-48516573 None:intergenic 35.0%
GGATTAAATTGCGTGAATAC+AGG - chr1_3:48516633-48516652 Msa0122180:intron 35.0%
! GACTAACTTGTGGTATACTA+TGG - chr1_3:48516675-48516694 Msa0122180:intron 35.0%
TACTTATCATGGAGAGCTTA+TGG + chr1_3:48516786-48516805 None:intergenic 35.0%
GACCTTCAAAAGATTGAACA+AGG - chr1_3:48517024-48517043 Msa0122180:intron 35.0%
! TCCCTTGTTCAATCTTTTGA+AGG + chr1_3:48517029-48517048 None:intergenic 35.0%
AAAAGATTGAACAAGGGACA+AGG - chr1_3:48517031-48517050 Msa0122180:intron 35.0%
TGATAGATAACAGCTCTCTT+TGG - chr1_3:48517106-48517125 Msa0122180:intron 35.0%
GATAGATAACAGCTCTCTTT+GGG - chr1_3:48517107-48517126 Msa0122180:intron 35.0%
ATAGATAACAGCTCTCTTTG+GGG - chr1_3:48517108-48517127 Msa0122180:intron 35.0%
GGTTCTTCTCTTTCAATCAA+AGG - chr1_3:48517129-48517148 Msa0122180:intron 35.0%
TCTTCTCTTTCAATCAAAGG+AGG - chr1_3:48517132-48517151 Msa0122180:intron 35.0%
ATCATAAACTGGACAGAACA+AGG + chr1_3:48517330-48517349 None:intergenic 35.0%
TAATCCACCAGATCATAAAC+TGG + chr1_3:48517341-48517360 None:intergenic 35.0%
!! GGAGAGTTGATGGATTGTTA+TGG - chr1_3:48514956-48514975 Msa0122180:three_prime_UTR 40.0%
CCCAAATGGTTAGAACTCAA+AGG + chr1_3:48515078-48515097 None:intergenic 40.0%
ACACCAATAAAAGTCCCTTG+AGG + chr1_3:48515102-48515121 None:intergenic 40.0%
TTAATCCAACGACGGATGTT+TGG + chr1_3:48515326-48515345 None:intergenic 40.0%
CCGTCGTTGGATTAATCTAA+AGG - chr1_3:48515331-48515350 Msa0122180:CDS 40.0%
TAACCTGAATCCTCTATAGC+CGG - chr1_3:48515441-48515460 Msa0122180:intron 40.0%
TTGAGGCCTAAAAGGTTACT+AGG + chr1_3:48515626-48515645 None:intergenic 40.0%
AGCTGAAAATCAAGGCTTGT+CGG - chr1_3:48515759-48515778 Msa0122180:intron 40.0%
!! ATCAGCAGGTACTTGTTGTT+TGG - chr1_3:48515870-48515889 Msa0122180:CDS 40.0%
! TTGGTGGGGATAATTTGCAA+TGG - chr1_3:48515889-48515908 Msa0122180:CDS 40.0%
TTGCAAATTCTGGTGACTCA+AGG - chr1_3:48515923-48515942 Msa0122180:CDS 40.0%
TGCAAATTCTGGTGACTCAA+GGG - chr1_3:48515924-48515943 Msa0122180:CDS 40.0%
GTTCATCTCTCACTCTTTCA+AGG + chr1_3:48516023-48516042 None:intergenic 40.0%
GCCTCATACAGGTACAAATT+TGG - chr1_3:48516109-48516128 Msa0122180:intron 40.0%
! AGTCTGAACTTTGATGGTAG+AGG + chr1_3:48516297-48516316 None:intergenic 40.0%
TCAGCAAGTCTGAACTTTGA+TGG + chr1_3:48516303-48516322 None:intergenic 40.0%
AAATCTTGATCGAACAGTCC+AGG - chr1_3:48516556-48516575 Msa0122180:CDS 40.0%
GCAAAACAAGCTAAAACACC+TGG + chr1_3:48516577-48516596 None:intergenic 40.0%
ACTGCATTCTGACTAACTTG+TGG - chr1_3:48516665-48516684 Msa0122180:intron 40.0%
TCTCTTTCAATCAAAGGAGG+TGG - chr1_3:48517135-48517154 Msa0122180:intron 40.0%
AAACTGGACAGAACAAGGTA+GGG + chr1_3:48517325-48517344 None:intergenic 40.0%
TAAACTGGACAGAACAAGGT+AGG + chr1_3:48517326-48517345 None:intergenic 40.0%
GTTCTGTCCAGTTTATGATC+TGG - chr1_3:48517331-48517350 Msa0122180:CDS 40.0%
!! CAGATGGTGATGATGGAGAT+GGG - chr1_3:48514914-48514933 Msa0122180:three_prime_UTR 45.0%
TCTAACCATTTGGGTCCTCA+AGG - chr1_3:48515084-48515103 Msa0122180:three_prime_UTR 45.0%
CTAACCATTTGGGTCCTCAA+GGG - chr1_3:48515085-48515104 Msa0122180:three_prime_UTR 45.0%
! GGTCCTCAAGGGACTTTTAT+TGG - chr1_3:48515096-48515115 Msa0122180:three_prime_UTR 45.0%
GGTGTTTATGATGGTCATGG+TGG - chr1_3:48515117-48515136 Msa0122180:three_prime_UTR 45.0%
GGGTAACTTAGTGCATGAGA+GGG + chr1_3:48515685-48515704 None:intergenic 45.0%
AGGGTAACTTAGTGCATGAG+AGG + chr1_3:48515686-48515705 None:intergenic 45.0%
GTACCTGCTGATGCAATATG+TGG + chr1_3:48515862-48515881 None:intergenic 45.0%
!! AGCAGGTACTTGTTGTTTGG+TGG - chr1_3:48515873-48515892 Msa0122180:CDS 45.0%
!! GCAGGTACTTGTTGTTTGGT+GGG - chr1_3:48515874-48515893 Msa0122180:CDS 45.0%
!! CAGGTACTTGTTGTTTGGTG+GGG - chr1_3:48515875-48515894 Msa0122180:CDS 45.0%
AAATTCTGGTGACTCAAGGG+TGG - chr1_3:48515927-48515946 Msa0122180:CDS 45.0%
! TGGTGTTAGGAAGACTAGAG+AGG - chr1_3:48515947-48515966 Msa0122180:CDS 45.0%
GGTGTTAGGAAGACTAGAGA+GGG - chr1_3:48515948-48515967 Msa0122180:CDS 45.0%
AAGACTAGAGAGGGCAACAA+GGG - chr1_3:48515957-48515976 Msa0122180:CDS 45.0%
CACAATGTTTGGCGTGTCAA+AGG - chr1_3:48516087-48516106 Msa0122180:intron 45.0%
GATGGCTCACAGCTAAGAAT+TGG + chr1_3:48516339-48516358 None:intergenic 45.0%
ACGAGCTGTCCGATCTTAAT+TGG - chr1_3:48516608-48516627 Msa0122180:intron 45.0%
GCTGTCCGATCTTAATTGGA+CGG - chr1_3:48516612-48516631 Msa0122180:intron 45.0%
AACTGGACAGAACAAGGTAG+GGG + chr1_3:48517324-48517343 None:intergenic 45.0%
CTGTCCAGTTTATGATCTGG+TGG - chr1_3:48517334-48517353 Msa0122180:CDS 45.0%
!! GCAGATGGTGATGATGGAGA+TGG - chr1_3:48514913-48514932 Msa0122180:three_prime_UTR 50.0%
ATGGAGATGGGAGTGGAAGT+GGG - chr1_3:48514926-48514945 Msa0122180:three_prime_UTR 50.0%
AAGTCCCTTGAGGACCCAAA+TGG + chr1_3:48515092-48515111 None:intergenic 50.0%
TCTAAAGGCTCGTGTTTGGC+CGG - chr1_3:48515346-48515365 Msa0122180:CDS 50.0%
ATCTACACAGCCGGCTATAG+AGG + chr1_3:48515454-48515473 None:intergenic 50.0%
TATAGTCGGGTGCACCATAG+CGG - chr1_3:48515519-48515538 Msa0122180:intron 50.0%
ATCCTCCACAATCACCGCTA+TGG + chr1_3:48515536-48515555 None:intergenic 50.0%
! TGATTTTCAGCTGCAAGCCC+TGG + chr1_3:48515751-48515770 None:intergenic 50.0%
GGGCTTGCAGCTGAAAATCA+AGG - chr1_3:48515751-48515770 Msa0122180:intron 50.0%
CAGCCACATATTGCATCAGC+AGG - chr1_3:48515856-48515875 Msa0122180:intron 50.0%
GAAGACTAGAGAGGGCAACA+AGG - chr1_3:48515956-48515975 Msa0122180:CDS 50.0%
TTGCAGGTTTCGCGATCGAT+CGG - chr1_3:48516234-48516253 Msa0122180:CDS 50.0%
GGAGCAGCTTAGCAATCAAG+AGG - chr1_3:48516422-48516441 Msa0122180:CDS 50.0%
ACTGGACAGAACAAGGTAGG+GGG + chr1_3:48517323-48517342 None:intergenic 50.0%
CCATCATCACCATCTGCAGC+TGG + chr1_3:48514910-48514929 None:intergenic 55.0%
! CCAGCTGCAGATGGTGATGA+TGG - chr1_3:48514907-48514926 Msa0122180:three_prime_UTR 55.0%
!! GGTGATGATGGAGATGGGAG+TGG - chr1_3:48514919-48514938 Msa0122180:three_prime_UTR 55.0%
GATGGAGATGGGAGTGGAAG+TGG - chr1_3:48514925-48514944 Msa0122180:three_prime_UTR 55.0%
TTCGGCCAAACATCCGTCGT+TGG - chr1_3:48515318-48515337 Msa0122180:CDS 55.0%
CAGCCGGCTATAGAGGATTC+AGG + chr1_3:48515447-48515466 None:intergenic 55.0%
GTGCACCATAGCGGTGATTG+TGG - chr1_3:48515528-48515547 Msa0122180:intron 55.0%
CACCATAGCGGTGATTGTGG+AGG - chr1_3:48515531-48515550 Msa0122180:intron 55.0%
GGTGACTCAAGGGTGGTGTT+AGG - chr1_3:48515934-48515953 Msa0122180:CDS 55.0%
GCGTGTCAAAGGCCTCATAC+AGG - chr1_3:48516098-48516117 Msa0122180:intron 55.0%
CAGCACTCAGAGAAGCAGCA+AGG - chr1_3:48516980-48516999 Msa0122180:intron 55.0%
TGCTGGAAGCCAGCTGCAGA+TGG - chr1_3:48514898-48514917 Msa0122180:three_prime_UTR 60.0%
GATGGGAGTGGAAGTGGGAG+TGG - chr1_3:48514931-48514950 Msa0122180:three_prime_UTR 60.0%
GGAGTGGAAGTGGGAGTGGT+GGG - chr1_3:48514935-48514954 Msa0122180:three_prime_UTR 60.0%
! GGGAGTGGTGGGAGAGTTGA+TGG - chr1_3:48514946-48514965 Msa0122180:three_prime_UTR 60.0%
GGGAGTGGAAGTGGGAGTGG+TGG - chr1_3:48514934-48514953 Msa0122180:three_prime_UTR 65.0%
AGGCTCGTGTTTGGCCGGAG+AGG - chr1_3:48515351-48515370 Msa0122180:CDS 65.0%
GTGCAGCACTGCAGCCTCTC+CGG + chr1_3:48515368-48515387 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48514886 48517453 48514886 ID=Msa0122180;Name=Msa0122180
chr1_3 mRNA 48514886 48517453 48514886 ID=Msa0122180-mRNA-1;Parent=Msa0122180;Name=Msa0122180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.75|1|1|1|4|280|375
chr1_3 exon 48514886 48515384 48514886 ID=Msa0122180-mRNA-1:exon:14668;Parent=Msa0122180-mRNA-1
chr1_3 exon 48515863 48516099 48515863 ID=Msa0122180-mRNA-1:exon:14667;Parent=Msa0122180-mRNA-1
chr1_3 exon 48516220 48516587 48516220 ID=Msa0122180-mRNA-1:exon:14666;Parent=Msa0122180-mRNA-1
chr1_3 exon 48517150 48517453 48517150 ID=Msa0122180-mRNA-1:exon:14665;Parent=Msa0122180-mRNA-1
chr1_3 CDS 48517150 48517453 48517150 ID=Msa0122180-mRNA-1:cds;Parent=Msa0122180-mRNA-1
chr1_3 CDS 48516220 48516587 48516220 ID=Msa0122180-mRNA-1:cds;Parent=Msa0122180-mRNA-1
chr1_3 CDS 48515863 48516099 48515863 ID=Msa0122180-mRNA-1:cds;Parent=Msa0122180-mRNA-1
chr1_3 CDS 48515166 48515384 48515166 ID=Msa0122180-mRNA-1:cds;Parent=Msa0122180-mRNA-1
chr1_3 three_prime_UTR 48514886 48515165 48514886 ID=Msa0122180-mRNA-1:three_prime_utr;Parent=Msa0122180-mRNA-1
Gene Sequence

>Msa0122180

ATGGTGAGATCTTGCTGGAAGCCAGCTGCAGATGGTGATGATGGAGATGGGAGTGGAAGTGGGAGTGGTGGGAGAGTTGATGGATTGTTATGGTACAAAGATTTAGGGAACCATATTTATGGTGAATTTTCAATGGCTGTGATTCAAGCTAATAGTTCATTGGAGGATAGAAGTGAATTTGAGTCTGGACCTTTGAGTTCTAACCATTTGGGTCCTCAAGGGACTTTTATTGGTGTTTATGATGGTCATGGTGGAGCTGAAGCTTCTCAATTTGTCAGTGACAATCTTTTCTGCAATCTCAAAAGGCTTGCAGCTGAAAATCAAGGCTTGTCGGAAAATGTGATCAAAAGGGCATTTTCAGCAACAGAAGAGAGTTTTCTATCACTTGTGAATAAACAGTGGCTAAGACAGCCACATATTGCATCAGCAGGTACTTGTTGTTTGGTGGGGATAATTTGCAATGGACTGCTATATATTGCAAATTCTGGTGACTCAAGGGTGGTGTTAGGAAGACTAGAGAGGGCAACAAGGGAAACTTCAGCCATACAATTATCTGCAGAACATAATGTTAACCTTGAAAGAGTGAGAGATGAACTTAGATTAAGACACCCTTATGATTCACAAATTGTGGTTATGAGACACAATGTTTGGCGTGTCAAAGGCCTCATACAGGTTTCGCGATCGATCGGTGATGCATATCTGAAGAAAGCAGAATTCAATAGGGAGCCTCTACCATCAAAGTTCAGACTTGCTGAAACATTTTTCAAACCAATTCTTAGCTGTGAGCCATCCATTTCATCACATAAACTTCATCCAGATGACCAATTTCTCATATTTGCTTCTGATGGGTTATGGGAGCAGCTTAGCAATCAAGAGGCTGTTAACATAGTCAACAACAATCCACCTAATGGAATTGCAAGAAGACTTGTGAAAGCAGCACTCAGAGAAGCAGCAAGGAAGAGAGAGATGAGACTAGCAGACCTTCAAAAGATTGAACAAGGGACAAGGAGACACTTCCATGATGATATAACTGTGATTGTTGTGTTTCTTAATCACAAACTGATAGATAACAGCTCTCTTTGGGGTTCTTCTCTTTCAATCAAAGGAGGTGGATCTGCCAATCACTAA

Protein sequence

>Msa0122180

MVRSCWKPAADGDDGDGSGSGSGGRVDGLLWYKDLGNHIYGEFSMAVIQANSSLEDRSEFESGPLSSNHLGPQGTFIGVYDGHGGAEASQFVSDNLFCNLKRLAAENQGLSENVIKRAFSATEESFLSLVNKQWLRQPHIASAGTCCLVGIICNGLLYIANSGDSRVVLGRLERATRETSAIQLSAEHNVNLERVRDELRLRHPYDSQIVVMRHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLPSKFRLAETFFKPILSCEPSISSHKLHPDDQFLIFASDGLWEQLSNQEAVNIVNNNPPNGIARRLVKAALREAARKREMRLADLQKIEQGTRRHFHDDITVIVVFLNHKLIDNSSLWGSSLSIKGGGSANH*