Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827690 | AES98216.1 | 87.671 | 146 | 8 | 3 | 1 | 136 | 1 | 146 | 6.99e-84 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827690 | sp|Q24331|TID_DROVI | 46.988 | 83 | 44 | 0 | 36 | 118 | 71 | 153 | 8.31e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827690 | G7KBI1 | 87.671 | 146 | 8 | 3 | 1 | 136 | 1 | 146 | 3.34e-84 | 252 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037270 | Msa0827690 | 0.837932 | 3.882314e-57 | -8.615850e-47 |
| Msa0064490 | Msa0827690 | 0.811367 | 7.252623e-51 | -8.615850e-47 |
| Msa0065520 | Msa0827690 | 0.807419 | 5.101830e-50 | -8.615850e-47 |
| Msa0081120 | Msa0827690 | 0.852883 | 3.446252e-61 | -8.615850e-47 |
| Msa0086620 | Msa0827690 | 0.802015 | 6.856476e-49 | -8.615850e-47 |
| Msa0089700 | Msa0827690 | 0.812293 | 4.560067e-51 | -8.615850e-47 |
| Msa0093360 | Msa0827690 | 0.808199 | 3.483391e-50 | -8.615850e-47 |
| Msa0095890 | Msa0827690 | 0.801386 | 9.226832e-49 | -8.615850e-47 |
| Msa0603180 | Msa0827690 | 0.818197 | 2.222131e-52 | -8.615850e-47 |
| Msa0608780 | Msa0827690 | 0.801448 | 8.962115e-49 | -8.615850e-47 |
| Msa0649250 | Msa0827690 | 0.812760 | 3.604333e-51 | -8.615850e-47 |
| Msa0654850 | Msa0827690 | 0.801123 | 1.044540e-48 | -8.615850e-47 |
| Msa0673620 | Msa0827690 | 0.815990 | 6.965727e-52 | -8.615850e-47 |
| Msa0683150 | Msa0827690 | 0.808831 | 2.552959e-50 | -8.615850e-47 |
| Msa0684030 | Msa0827690 | 0.815100 | 1.098809e-51 | -8.615850e-47 |
| Msa0695250 | Msa0827690 | 0.806357 | 8.554746e-50 | -8.615850e-47 |
| Msa0713570 | Msa0827690 | 0.810070 | 1.383688e-50 | -8.615850e-47 |
| Msa0755550 | Msa0827690 | 0.811662 | 6.258315e-51 | -8.615850e-47 |
| Msa0826820 | Msa0827690 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
| Msa0827690 | Msa0833200 | 0.801025 | 1.093981e-48 | -8.615850e-47 |
| Msa0827690 | Msa0835050 | 0.806387 | 8.430153e-50 | -8.615850e-47 |
| Msa0827690 | Msa0865500 | 0.803392 | 3.562531e-49 | -8.615850e-47 |
| Msa0827690 | Msa0902380 | 0.818996 | 1.464364e-52 | -8.615850e-47 |
| Msa0827690 | Msa0935840 | 0.814556 | 1.450525e-51 | -8.615850e-47 |
| Msa0827690 | Msa0945160 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
| Msa0827690 | Msa0964400 | 0.840400 | 8.894532e-58 | -8.615850e-47 |
| Msa0827690 | Msa0968060 | 0.807830 | 4.173372e-50 | -8.615850e-47 |
| Msa0827690 | Msa0973010 | 0.813047 | 3.118229e-51 | -8.615850e-47 |
| Msa0827690 | Msa1002550 | 0.808851 | 2.527750e-50 | -8.615850e-47 |
| Msa0827690 | Msa1028890 | 0.801025 | 1.093981e-48 | -8.615850e-47 |
| Msa0827690 | Msa1037440 | 0.815787 | 7.730430e-52 | -8.615850e-47 |
| Msa0827690 | Msa1078120 | 0.805747 | 1.149650e-49 | -8.615850e-47 |
| Msa0827690 | Msa1130150 | 0.815550 | 8.728841e-52 | -8.615850e-47 |
| Msa0827690 | Msa1156430 | 0.815408 | 9.390101e-52 | -8.615850e-47 |
| Msa0827690 | Msa1204870 | 0.826054 | 3.348352e-54 | -8.615850e-47 |
| Msa0827690 | Msa1204900 | 0.815308 | 9.879924e-52 | -8.615850e-47 |
| Msa0827690 | Msa1256490 | 0.821112 | 4.801255e-53 | -8.615850e-47 |
| Msa0827690 | Msa1266120 | 0.802617 | 5.153951e-49 | -8.615850e-47 |
| Msa0827690 | Msa1287100 | 0.808664 | 2.771458e-50 | -8.615850e-47 |
| Msa0827690 | Msa1295210 | 0.810749 | 9.872893e-51 | -8.615850e-47 |
| Msa0827690 | Msa1296810 | 0.814622 | 1.402908e-51 | -8.615850e-47 |
| Msa0827690 | Msa1342110 | 0.823720 | 1.189787e-53 | -8.615850e-47 |
| Msa0827690 | Msa1342360 | 0.806689 | 7.281958e-50 | -8.615850e-47 |
| Msa0827690 | Msa1412330 | 0.801137 | 1.037747e-48 | -8.615850e-47 |
| Msa0827690 | Msa1415510 | 0.805712 | 1.169148e-49 | -8.615850e-47 |
| Msa0827690 | Msa1449270 | 0.814143 | 1.790242e-51 | -8.615850e-47 |
| Msa0175210 | Msa0827690 | 0.802781 | 4.767537e-49 | -8.615850e-47 |
| Msa0207250 | Msa0827690 | 0.841055 | 5.991081e-58 | -8.615850e-47 |
| Msa0212950 | Msa0827690 | 0.806265 | 8.945009e-50 | -8.615850e-47 |
| Msa0225080 | Msa0827690 | 0.802510 | 5.422690e-49 | -8.615850e-47 |
| Msa0364910 | Msa0827690 | 0.803320 | 3.688434e-49 | -8.615850e-47 |
| Msa0382020 | Msa0827690 | 0.810702 | 1.010785e-50 | -8.615850e-47 |
| Msa0386880 | Msa0827690 | -0.815527 | 8.830869e-52 | -8.615850e-47 |
| Msa0403740 | Msa0827690 | 0.814012 | 1.912976e-51 | -8.615850e-47 |
| Msa0404070 | Msa0827690 | 0.809895 | 1.509150e-50 | -8.615850e-47 |
| Msa0412580 | Msa0827690 | 0.804644 | 1.956704e-49 | -8.615850e-47 |
| Msa0431270 | Msa0827690 | 0.826466 | 2.671815e-54 | -8.615850e-47 |
| Msa0431550 | Msa0827690 | 0.811263 | 7.641565e-51 | -8.615850e-47 |
| Msa0456450 | Msa0827690 | 0.806971 | 6.347388e-50 | -8.615850e-47 |
| Msa0457070 | Msa0827690 | 0.804518 | 2.078593e-49 | -8.615850e-47 |
| Msa0474660 | Msa0827690 | 0.813345 | 2.683300e-51 | -8.615850e-47 |
| Msa0476560 | Msa0827690 | 0.801125 | 1.043302e-48 | -8.615850e-47 |
| Msa0253230 | Msa0827690 | 0.805877 | 1.079462e-49 | -8.615850e-47 |
| Msa0255770 | Msa0827690 | 0.806324 | 8.692805e-50 | -8.615850e-47 |
| Msa0259450 | Msa0827690 | 0.804450 | 2.147326e-49 | -8.615850e-47 |
| Msa0259570 | Msa0827690 | 0.810348 | 1.205108e-50 | -8.615850e-47 |
| Msa0266150 | Msa0827690 | 0.811283 | 7.565018e-51 | -8.615850e-47 |
| Msa0266330 | Msa0827690 | 0.803464 | 3.442563e-49 | -8.615850e-47 |
| Msa0267450 | Msa0827690 | 0.802813 | 4.694526e-49 | -8.615850e-47 |
| Msa0267510 | Msa0827690 | 0.803476 | 3.423989e-49 | -8.615850e-47 |
| Msa0279810 | Msa0827690 | -0.821637 | 3.632015e-53 | -8.615850e-47 |
| Msa0305630 | Msa0827690 | 0.804482 | 2.115115e-49 | -8.615850e-47 |
| Msa0319220 | Msa0827690 | -0.808849 | 2.530026e-50 | -8.615850e-47 |
| Msa0341950 | Msa0827690 | 0.803075 | 4.144344e-49 | -8.615850e-47 |
| Msa0364030 | Msa0827690 | 0.815032 | 1.138172e-51 | -8.615850e-47 |
| Msa0506700 | Msa0827690 | 0.805730 | 1.159222e-49 | -8.615850e-47 |
| Msa0520550 | Msa0827690 | 0.845414 | 4.121717e-59 | -8.615850e-47 |
| Msa0548260 | Msa0827690 | 0.817464 | 3.252768e-52 | -8.615850e-47 |
| Msa0582270 | Msa0827690 | 0.800752 | 1.243873e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827690 | MtrunA17_Chr5g0427221 | 87.671 | 146 | 8 | 3 | 1 | 136 | 1 | 146 | 6.43e-88 | 252 |
| Msa0827690 | MtrunA17_Chr4g0021141 | 62.000 | 100 | 31 | 2 | 41 | 133 | 18 | 117 | 2.39e-39 | 129 |
| Msa0827690 | MtrunA17_Chr2g0282761 | 56.250 | 64 | 27 | 1 | 45 | 107 | 4 | 67 | 1.37e-16 | 74.3 |
| Msa0827690 | MtrunA17_Chr3g0138471 | 54.688 | 64 | 28 | 1 | 45 | 107 | 4 | 67 | 1.93e-16 | 73.9 |
| Msa0827690 | MtrunA17_Chr2g0282741 | 53.125 | 64 | 29 | 1 | 45 | 107 | 4 | 67 | 2.29e-16 | 73.9 |
| Msa0827690 | MtrunA17_Chr7g0263971 | 52.174 | 69 | 32 | 1 | 40 | 107 | 364 | 432 | 6.21e-16 | 73.2 |
| Msa0827690 | MtrunA17_Chr4g0040501 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 2.68e-15 | 70.9 |
| Msa0827690 | MtrunA17_Chr4g0006391 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 7.40e-15 | 69.7 |
| Msa0827690 | MtrunA17_Chr1g0159491 | 46.479 | 71 | 38 | 0 | 40 | 110 | 1 | 71 | 8.73e-15 | 64.7 |
| Msa0827690 | MtrunA17_Chr5g0426951 | 40.964 | 83 | 49 | 0 | 25 | 107 | 63 | 145 | 1.49e-14 | 68.9 |
| Msa0827690 | MtrunA17_Chr3g0087741 | 41.026 | 78 | 45 | 1 | 44 | 121 | 88 | 164 | 2.35e-14 | 68.6 |
| Msa0827690 | MtrunA17_Chr2g0324921 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 5.06e-14 | 67.4 |
| Msa0827690 | MtrunA17_Chr5g0399201 | 42.254 | 71 | 38 | 1 | 44 | 111 | 11 | 81 | 1.31e-13 | 66.6 |
| Msa0827690 | MtrunA17_Chr1g0209551 | 39.726 | 73 | 44 | 0 | 38 | 110 | 9 | 81 | 2.83e-13 | 65.5 |
| Msa0827690 | MtrunA17_Chr7g0269841 | 46.479 | 71 | 37 | 1 | 37 | 107 | 19 | 88 | 3.00e-13 | 65.1 |
| Msa0827690 | MtrunA17_Chr5g0414471 | 44.118 | 68 | 38 | 0 | 44 | 111 | 24 | 91 | 5.17e-13 | 64.7 |
| Msa0827690 | MtrunA17_Chr8g0344721 | 38.462 | 91 | 40 | 3 | 42 | 117 | 7 | 96 | 5.40e-13 | 63.5 |
| Msa0827690 | MtrunA17_Chr4g0010781 | 43.284 | 67 | 38 | 0 | 41 | 107 | 82 | 148 | 6.54e-13 | 64.3 |
| Msa0827690 | MtrunA17_Chr7g0271891 | 45.588 | 68 | 33 | 1 | 46 | 109 | 17 | 84 | 2.06e-12 | 60.8 |
| Msa0827690 | MtrunA17_Chr1g0159511 | 45.070 | 71 | 39 | 0 | 40 | 110 | 1 | 71 | 2.12e-12 | 62.8 |
| Msa0827690 | MtrunA17_Chr2g0333221 | 39.583 | 96 | 46 | 3 | 26 | 110 | 40 | 134 | 3.31e-12 | 62.4 |
| Msa0827690 | MtrunA17_Chr5g0415731 | 44.595 | 74 | 33 | 1 | 45 | 110 | 5 | 78 | 5.19e-12 | 59.3 |
| Msa0827690 | MtrunA17_Chr7g0242951 | 42.857 | 70 | 39 | 1 | 41 | 110 | 23 | 91 | 5.54e-12 | 61.6 |
| Msa0827690 | MtrunA17_Chr6g0478651 | 46.875 | 64 | 33 | 1 | 44 | 107 | 67 | 129 | 1.04e-11 | 60.8 |
| Msa0827690 | MtrunA17_Chr5g0405501 | 42.500 | 80 | 43 | 2 | 30 | 107 | 57 | 135 | 1.14e-11 | 58.9 |
| Msa0827690 | MtrunA17_Chr3g0123861 | 43.939 | 66 | 36 | 1 | 45 | 110 | 82 | 146 | 1.72e-11 | 60.5 |
| Msa0827690 | MtrunA17_Chr6g0476751 | 42.553 | 94 | 49 | 3 | 17 | 107 | 36 | 127 | 2.93e-11 | 59.7 |
| Msa0827690 | MtrunA17_Chr8g0352451 | 44.304 | 79 | 43 | 1 | 33 | 110 | 59 | 137 | 5.69e-11 | 58.9 |
| Msa0827690 | MtrunA17_Chr2g0307061 | 39.437 | 71 | 42 | 1 | 40 | 110 | 105 | 174 | 6.20e-11 | 58.5 |
| Msa0827690 | MtrunA17_Chr5g0393371 | 42.254 | 71 | 41 | 0 | 40 | 110 | 1 | 71 | 6.75e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827690 | AT2G33735.1 | 63.636 | 110 | 33 | 2 | 33 | 136 | 11 | 119 | 4.56e-42 | 135 |
| Msa0827690 | AT2G33735.2 | 63.636 | 110 | 33 | 2 | 33 | 136 | 11 | 119 | 4.56e-42 | 135 |
| Msa0827690 | AT5G16650.1 | 65.347 | 101 | 28 | 2 | 41 | 134 | 7 | 107 | 2.87e-40 | 131 |
| Msa0827690 | AT5G16650.2 | 65.347 | 101 | 28 | 2 | 41 | 134 | 7 | 107 | 3.82e-40 | 132 |
| Msa0827690 | AT3G47940.1 | 52.941 | 68 | 30 | 1 | 45 | 110 | 4 | 71 | 2.18e-16 | 74.3 |
| Msa0827690 | AT5G25530.2 | 53.125 | 64 | 29 | 1 | 45 | 107 | 4 | 67 | 6.08e-16 | 73.2 |
| Msa0827690 | AT1G59725.1 | 52.308 | 65 | 29 | 1 | 45 | 107 | 4 | 68 | 4.47e-15 | 70.5 |
| Msa0827690 | AT4G28480.2 | 51.562 | 64 | 30 | 1 | 45 | 107 | 4 | 67 | 6.22e-15 | 69.7 |
| Msa0827690 | AT4G28480.1 | 51.562 | 64 | 30 | 1 | 45 | 107 | 4 | 67 | 8.23e-15 | 70.1 |
| Msa0827690 | AT5G01390.4 | 49.254 | 67 | 33 | 1 | 45 | 110 | 4 | 70 | 8.84e-15 | 68.6 |
| Msa0827690 | AT5G01390.3 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 9.44e-15 | 68.6 |
| Msa0827690 | AT3G08910.1 | 51.562 | 64 | 30 | 1 | 45 | 107 | 4 | 67 | 9.88e-15 | 69.7 |
| Msa0827690 | AT2G20560.1 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 1.48e-14 | 69.3 |
| Msa0827690 | AT5G01390.2 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 1.60e-14 | 68.6 |
| Msa0827690 | AT5G01390.1 | 50.000 | 64 | 31 | 1 | 45 | 107 | 4 | 67 | 2.20e-14 | 68.6 |
| Msa0827690 | AT1G10350.1 | 48.438 | 64 | 32 | 1 | 45 | 107 | 4 | 67 | 3.68e-14 | 68.2 |
| Msa0827690 | AT5G25530.1 | 48.611 | 72 | 28 | 2 | 45 | 107 | 4 | 75 | 7.74e-14 | 67.4 |
| Msa0827690 | AT5G48030.1 | 42.857 | 70 | 40 | 0 | 38 | 107 | 87 | 156 | 1.12e-13 | 67.0 |
| Msa0827690 | AT3G62600.1 | 46.269 | 67 | 36 | 0 | 44 | 110 | 25 | 91 | 2.03e-13 | 65.9 |
| Msa0827690 | AT1G68370.1 | 43.836 | 73 | 41 | 0 | 38 | 110 | 10 | 82 | 3.96e-13 | 65.5 |
| Msa0827690 | AT1G59980.1 | 41.791 | 67 | 39 | 0 | 44 | 110 | 22 | 88 | 6.73e-13 | 64.7 |
| Msa0827690 | AT3G08970.1 | 44.286 | 70 | 38 | 1 | 41 | 110 | 23 | 91 | 7.26e-13 | 64.7 |
| Msa0827690 | AT3G08970.2 | 44.286 | 70 | 38 | 1 | 41 | 110 | 23 | 91 | 7.26e-13 | 64.7 |
| Msa0827690 | AT1G59980.2 | 43.750 | 64 | 36 | 0 | 47 | 110 | 25 | 88 | 8.14e-13 | 64.3 |
| Msa0827690 | AT1G28210.2 | 37.805 | 82 | 50 | 1 | 41 | 121 | 44 | 125 | 1.42e-12 | 63.9 |
| Msa0827690 | AT1G56300.2 | 45.588 | 68 | 33 | 1 | 46 | 109 | 14 | 81 | 1.68e-12 | 60.5 |
| Msa0827690 | AT1G24120.1 | 41.791 | 67 | 39 | 0 | 44 | 110 | 19 | 85 | 2.82e-12 | 62.8 |
| Msa0827690 | AT1G56300.1 | 45.588 | 68 | 33 | 1 | 46 | 109 | 14 | 81 | 3.13e-12 | 60.5 |
| Msa0827690 | AT5G03160.1 | 43.478 | 69 | 38 | 1 | 40 | 107 | 365 | 433 | 4.29e-12 | 62.4 |
| Msa0827690 | AT2G21510.3 | 46.479 | 71 | 38 | 0 | 40 | 110 | 1 | 71 | 8.88e-12 | 61.2 |
| Msa0827690 | AT2G21510.1 | 46.479 | 71 | 38 | 0 | 40 | 110 | 1 | 71 | 8.88e-12 | 61.2 |
| Msa0827690 | AT4G39960.1 | 38.824 | 85 | 49 | 2 | 26 | 110 | 68 | 149 | 9.60e-12 | 61.6 |
| Msa0827690 | AT4G39960.2 | 38.824 | 85 | 49 | 2 | 26 | 110 | 68 | 149 | 9.60e-12 | 61.6 |
| Msa0827690 | AT2G21510.2 | 46.479 | 71 | 38 | 0 | 40 | 110 | 1 | 71 | 9.94e-12 | 61.2 |
| Msa0827690 | AT2G21510.4 | 46.479 | 71 | 38 | 0 | 40 | 110 | 1 | 71 | 9.94e-12 | 61.2 |
| Msa0827690 | AT2G21510.5 | 46.479 | 71 | 38 | 0 | 40 | 110 | 1 | 71 | 1.02e-11 | 61.2 |
| Msa0827690 | AT2G22360.1 | 45.455 | 66 | 35 | 1 | 45 | 110 | 86 | 150 | 1.29e-11 | 61.2 |
| Msa0827690 | AT1G28210.1 | 40.299 | 67 | 40 | 0 | 41 | 107 | 44 | 110 | 1.53e-11 | 60.8 |
| Msa0827690 | AT1G28210.3 | 37.805 | 82 | 50 | 1 | 41 | 121 | 44 | 125 | 1.58e-11 | 60.8 |
| Msa0827690 | AT1G71000.2 | 47.143 | 70 | 33 | 2 | 44 | 109 | 7 | 76 | 1.81e-11 | 58.5 |
| Msa0827690 | AT1G72416.3 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 2.08e-11 | 59.3 |
| Msa0827690 | AT1G71000.1 | 47.143 | 70 | 33 | 2 | 44 | 109 | 7 | 76 | 2.85e-11 | 58.2 |
| Msa0827690 | AT5G18750.1 | 51.562 | 64 | 30 | 1 | 45 | 108 | 66 | 128 | 3.48e-11 | 60.1 |
| Msa0827690 | AT1G72416.4 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 3.78e-11 | 58.2 |
| Msa0827690 | AT1G72416.1 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 4.01e-11 | 58.2 |
| Msa0827690 | AT1G72416.2 | 40.000 | 70 | 39 | 1 | 44 | 110 | 4 | 73 | 4.80e-11 | 58.2 |
| Msa0827690 | AT1G21080.3 | 42.254 | 71 | 41 | 0 | 40 | 110 | 1 | 71 | 5.26e-11 | 59.3 |
| Msa0827690 | AT1G21080.1 | 42.254 | 71 | 41 | 0 | 40 | 110 | 1 | 71 | 5.42e-11 | 59.3 |
| Msa0827690 | AT3G17830.1 | 46.032 | 63 | 33 | 1 | 45 | 107 | 63 | 124 | 5.52e-11 | 59.3 |
Find 55 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGAATTTGGTCGGGTTT+TGG | 0.162317 | 5_3:+69116020 | None:intergenic |
| TGATATTGATGTTCTTAATT+TGG | 0.210352 | 5_3:-69112600 | Msa0827690:three_prime_UTR |
| AGGAATGTGGGTCGGGAATT+TGG | 0.255023 | 5_3:+69116009 | None:intergenic |
| TCCTGGTCTTTCTGTTTATC+CGG | 0.282566 | 5_3:+69115677 | None:intergenic |
| TCAGGATTATTACAAGATAT+TGG | 0.303213 | 5_3:-69115863 | Msa0827690:intron |
| TTGGCATTAAGCATTCAATT+TGG | 0.310126 | 5_3:-69112836 | Msa0827690:CDS |
| CTGATAATGGCATGCAGTGC+CGG | 0.361977 | 5_3:+69112749 | None:intergenic |
| TAATTACATTCGTCTTGCTT+TGG | 0.373388 | 5_3:-69115803 | Msa0827690:intron |
| TTCTTCCCATTCCCACATCA+TGG | 0.397478 | 5_3:+69116079 | None:intergenic |
| AGGAGAGAGTATGACATAAA+CGG | 0.419785 | 5_3:-69113401 | Msa0827690:CDS |
| ACCGTGACGTGGCCGAATCC+TGG | 0.424294 | 5_3:+69115660 | None:intergenic |
| GAAGAAATCGAAGTTGAGAT+AGG | 0.427186 | 5_3:+69115989 | None:intergenic |
| GGAGAGAGTATGACATAAAC+GGG | 0.439604 | 5_3:-69113400 | Msa0827690:CDS |
| CCTCAACCATGATGTGGGAA+TGG | 0.450761 | 5_3:-69116085 | Msa0827690:exon |
| CCTGGTCTTTCTGTTTATCC+GGG | 0.450762 | 5_3:+69115678 | None:intergenic |
| TGTAAACAATGACTATCGTT+TGG | 0.455750 | 5_3:-69112638 | Msa0827690:three_prime_UTR |
| TGTCCAAGGGGCACTGGATG+TGG | 0.457239 | 5_3:+69112787 | None:intergenic |
| ATATTGACTTGCAATGGCCT+TGG | 0.458509 | 5_3:-69112855 | Msa0827690:CDS |
| TTGAGATAGGAATGTGGGTC+GGG | 0.467627 | 5_3:+69116002 | None:intergenic |
| CTCAACCATGATGTGGGAAT+GGG | 0.469046 | 5_3:-69116084 | Msa0827690:exon |
| TTATTACAAGATATTGGAAG+TGG | 0.477411 | 5_3:-69115857 | Msa0827690:CDS |
| GATGTGGATGTCTGAGATGC+TGG | 0.483596 | 5_3:+69112803 | None:intergenic |
| AGATATAAATGAGGCCTACC+AGG | 0.484166 | 5_3:-69115633 | Msa0827690:CDS |
| CCATTCCCACATCATGGTTG+AGG | 0.501927 | 5_3:+69116085 | None:intergenic |
| GGATTATCTTAACCGTTACA+AGG | 0.505133 | 5_3:-69112883 | Msa0827690:CDS |
| TGATAATGGCATGCAGTGCC+GGG | 0.505380 | 5_3:+69112750 | None:intergenic |
| ATGTGGGTCGGGAATTTGGT+CGG | 0.514552 | 5_3:+69116013 | None:intergenic |
| TGTGGGTCGGGAATTTGGTC+GGG | 0.522025 | 5_3:+69116014 | None:intergenic |
| TAAACAGAAAGACCAGGATT+CGG | 0.523730 | 5_3:-69115672 | Msa0827690:CDS |
| CTCTGCTCTCTCTAAACCCA+AGG | 0.525481 | 5_3:-69115967 | Msa0827690:intron |
| CATCCACATCCAGTGCCCCT+TGG | 0.537201 | 5_3:-69112790 | Msa0827690:three_prime_UTR |
| CACTCTCCTCAACCATGATG+TGG | 0.540761 | 5_3:-69116091 | Msa0827690:exon |
| AAGTCTGAAGCTATTCCTCT+AGG | 0.547428 | 5_3:+69112701 | None:intergenic |
| ATATAAATAAATACCCTGGT+AGG | 0.557717 | 5_3:+69115619 | None:intergenic |
| ATGATTAAGCTTGCGGTGAG+TGG | 0.564487 | 5_3:+69116162 | None:intergenic |
| AAATTGAATGCTTAATGCCA+AGG | 0.566829 | 5_3:+69112838 | None:intergenic |
| TTACGAAATGATTAAGCTTG+CGG | 0.570442 | 5_3:+69116155 | None:intergenic |
| GGTCTCATATTGACTTGCAA+TGG | 0.584945 | 5_3:-69112861 | Msa0827690:CDS |
| ACATCAATATCATTGCATCA+TGG | 0.588336 | 5_3:+69112611 | None:intergenic |
| CGAAGTTGAGATAGGAATGT+GGG | 0.588768 | 5_3:+69115997 | None:intergenic |
| ACCAGGATTCGGCCACGTCA+CGG | 0.591695 | 5_3:-69115661 | Msa0827690:CDS |
| ACTCTCCTCAACCATGATGT+GGG | 0.607401 | 5_3:-69116090 | Msa0827690:exon |
| TATATCTTGAAACCGTGACG+TGG | 0.614774 | 5_3:+69115649 | None:intergenic |
| TGAACGAGAATATGAGTGGT+CGG | 0.621088 | 5_3:+69116112 | None:intergenic |
| CCCGGATAAACAGAAAGACC+AGG | 0.622579 | 5_3:-69115678 | Msa0827690:CDS |
| ACGGTTTCAAGATATAAATG+AGG | 0.624622 | 5_3:-69115642 | Msa0827690:CDS |
| GTTGAGATAGGAATGTGGGT+CGG | 0.627338 | 5_3:+69116001 | None:intergenic |
| GAATACACAGAAATGGCACC+CGG | 0.630117 | 5_3:-69115696 | Msa0827690:intron |
| TCGAAGTTGAGATAGGAATG+TGG | 0.632051 | 5_3:+69115996 | None:intergenic |
| TCAATATGAGACCCTTGTAA+CGG | 0.650508 | 5_3:+69112871 | None:intergenic |
| GATTATCTTAACCGTTACAA+GGG | 0.654119 | 5_3:-69112882 | Msa0827690:CDS |
| GATATAAATGAGGCCTACCA+GGG | 0.671787 | 5_3:-69115632 | Msa0827690:intron |
| AGTGGATTACGATGCAACTG+AGG | 0.678193 | 5_3:-69115839 | Msa0827690:CDS |
| AGATGCTTATGATGTCCTAG+AGG | 0.685240 | 5_3:-69112716 | Msa0827690:three_prime_UTR |
| AGAGTGAACGAGAATATGAG+TGG | 0.686675 | 5_3:+69116108 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAATTAAGATGA+AGG | + | chr5_3:69112845-69112864 | None:intergenic | 10.0% |
| !!! | ATTAAAATTTTGTAATTTCA+GGG | + | chr5_3:69115559-69115578 | None:intergenic | 10.0% |
| !!! | ATTTTGAAATATTGATAATA+TGG | - | chr5_3:69115742-69115761 | Msa0827690:intron | 10.0% |
| !!! | AATTAGTTTATGATTTGTTT+TGG | - | chr5_3:69112877-69112896 | Msa0827690:CDS | 15.0% |
| !! | TTTATACTATCTATTTAATC+TGG | - | chr5_3:69113405-69113424 | Msa0827690:CDS | 15.0% |
| !!! | TTCTAAAAGTAACTATAATT+AGG | + | chr5_3:69113496-69113515 | None:intergenic | 15.0% |
| !! | AAAATTATAAATCTCTTAGA+AGG | + | chr5_3:69114619-69114638 | None:intergenic | 15.0% |
| !!! | TAAACTAATGTTTTTTATGT+GGG | - | chr5_3:69114971-69114990 | Msa0827690:intron | 15.0% |
| !! | TTAAGAATTAATAACATAGT+TGG | - | chr5_3:69115018-69115037 | Msa0827690:intron | 15.0% |
| !! | TTAGATTATACTAACTTTAT+AGG | + | chr5_3:69115302-69115321 | None:intergenic | 15.0% |
| !! | ATGATTATAATATCATTGTA+AGG | - | chr5_3:69115403-69115422 | Msa0827690:intron | 15.0% |
| !!! | GATTAAAATTTTGTAATTTC+AGG | + | chr5_3:69115560-69115579 | None:intergenic | 15.0% |
| !! | AAAATATCAAATAAACAGAA+CGG | + | chr5_3:69115847-69115866 | None:intergenic | 15.0% |
| !! | ATAAAAATTAAGATGAAGGA+CGG | + | chr5_3:69112841-69112860 | None:intergenic | 20.0% |
| !! | CAATATATAAATAAATACCC+TGG | + | chr5_3:69113155-69113174 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTTAAATTACTAC+TGG | + | chr5_3:69113896-69113915 | None:intergenic | 20.0% |
| !! | ACATACATAGAATAAAAGAA+AGG | - | chr5_3:69114093-69114112 | Msa0827690:intron | 20.0% |
| !!! | ATGGTTTTTGCTTTTTTAAA+TGG | - | chr5_3:69114283-69114302 | Msa0827690:intron | 20.0% |
| !! | AAGGTTATAAATCATATCAA+AGG | + | chr5_3:69114600-69114619 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTAAGTTTATATG+CGG | - | chr5_3:69114858-69114877 | Msa0827690:intron | 20.0% |
| !! | AATATTAACTACACTAAATC+TGG | + | chr5_3:69114921-69114940 | None:intergenic | 20.0% |
| !!! | GTAAACTAATGTTTTTTATG+TGG | - | chr5_3:69114970-69114989 | Msa0827690:intron | 20.0% |
| !! | ACTAAATTAAAATTTCCAAC+AGG | + | chr5_3:69115237-69115256 | None:intergenic | 20.0% |
| !! | ATAGGCAAATAATAAAGAAT+AGG | + | chr5_3:69115284-69115303 | None:intergenic | 20.0% |
| !!! | TTGAAATATTGATAATATGG+AGG | - | chr5_3:69115745-69115764 | Msa0827690:intron | 20.0% |
| !! | TGATATTGATGTTCTTAATT+TGG | - | chr5_3:69116167-69116186 | Msa0827690:five_prime_UTR | 20.0% |
| !!! | ATGATTTGTTTTGGTTTTTC+AGG | - | chr5_3:69112886-69112905 | Msa0827690:intron | 25.0% |
| ! | TCAGGATTATTACAAGATAT+TGG | - | chr5_3:69112904-69112923 | Msa0827690:intron | 25.0% |
| ! | TTATTACAAGATATTGGAAG+TGG | - | chr5_3:69112910-69112929 | Msa0827690:intron | 25.0% |
| !! | TTTCCTTTCTAATTTCGTTT+TGG | - | chr5_3:69113017-69113036 | Msa0827690:intron | 25.0% |
| !! | TTCCTTTCTAATTTCGTTTT+GGG | - | chr5_3:69113018-69113037 | Msa0827690:intron | 25.0% |
| ! | TGTATTCAGATTAATAGCAA+AGG | + | chr5_3:69113058-69113077 | None:intergenic | 25.0% |
| ! | TTAATCTGAATACACAGAAA+TGG | - | chr5_3:69113064-69113083 | Msa0827690:intron | 25.0% |
| ! | ATATAAATAAATACCCTGGT+AGG | + | chr5_3:69113151-69113170 | None:intergenic | 25.0% |
| ! | AGGACAAATTTATACAGAAA+AGG | - | chr5_3:69113470-69113489 | Msa0827690:intron | 25.0% |
| !! | TAGAATTCTCTTTTGCATTA+TGG | - | chr5_3:69113511-69113530 | Msa0827690:intron | 25.0% |
| ! | ATGGTAAAAATTATCTTTGC+TGG | - | chr5_3:69113530-69113549 | Msa0827690:intron | 25.0% |
| ! | AATTTACCAACATGAAATGT+GGG | - | chr5_3:69113684-69113703 | Msa0827690:intron | 25.0% |
| ! | AAAAATTCGAACAGCAATAA+AGG | - | chr5_3:69113809-69113828 | Msa0827690:intron | 25.0% |
| ! | ACCTAACTGAGATAAAAAAA+CGG | - | chr5_3:69114046-69114065 | Msa0827690:intron | 25.0% |
| ! | ACAAAAATGTTGCATAACAA+AGG | - | chr5_3:69114164-69114183 | Msa0827690:intron | 25.0% |
| ! | GTATTTATTCACGGAAAAAA+AGG | + | chr5_3:69114193-69114212 | None:intergenic | 25.0% |
| ! | CCATCTATTGTATTTATTCA+CGG | + | chr5_3:69114202-69114221 | None:intergenic | 25.0% |
| ! | ATCTTAAGCCATTAAGATTA+AGG | + | chr5_3:69114265-69114284 | None:intergenic | 25.0% |
| ! | TTAATCTTAATGGCTTAAGA+TGG | - | chr5_3:69114264-69114283 | Msa0827690:intron | 25.0% |
| !!! | TTATTGAGTTGAATTAACCA+AGG | - | chr5_3:69114415-69114434 | Msa0827690:intron | 25.0% |
| ! | AATGCATGTAAAATAAAAGG+GGG | + | chr5_3:69114541-69114560 | None:intergenic | 25.0% |
| ! | CAATGCATGTAAAATAAAAG+GGG | + | chr5_3:69114542-69114561 | None:intergenic | 25.0% |
| ! | CCAATGCATGTAAAATAAAA+GGG | + | chr5_3:69114543-69114562 | None:intergenic | 25.0% |
| ! | ACCAATGCATGTAAAATAAA+AGG | + | chr5_3:69114544-69114563 | None:intergenic | 25.0% |
| ! | AGAATTAATAACATAGTTGG+TGG | - | chr5_3:69115021-69115040 | Msa0827690:intron | 25.0% |
| ! | AGTATAATCTAACATGTCTT+TGG | - | chr5_3:69115310-69115329 | Msa0827690:intron | 25.0% |
| !!! | TTGGAATATTGATAATGTGA+TGG | + | chr5_3:69115530-69115549 | None:intergenic | 25.0% |
| !! | ATTAACATTTTGCAATTCCA+GGG | - | chr5_3:69115716-69115735 | Msa0827690:intron | 25.0% |
| !!! | TTTTCATTTTTGTTTGTCGT+AGG | - | chr5_3:69115863-69115882 | Msa0827690:intron | 25.0% |
| !!! | TCTGTTTTTACTACTGATAA+TGG | + | chr5_3:69116034-69116053 | None:intergenic | 25.0% |
| TTACGAAATGATTAAGCTTG+CGG | + | chr5_3:69112615-69112634 | None:intergenic | 30.0% | |
| TAATTACATTCGTCTTGCTT+TGG | - | chr5_3:69112964-69112983 | Msa0827690:intron | 30.0% | |
| ATCCCAAAACGAAATTAGAA+AGG | + | chr5_3:69113023-69113042 | None:intergenic | 30.0% | |
| ACGGTTTCAAGATATAAATG+AGG | - | chr5_3:69113125-69113144 | Msa0827690:intron | 30.0% | |
| AAGTACATAACAATCTGTCA+AGG | - | chr5_3:69113307-69113326 | Msa0827690:intron | 30.0% | |
| AGTACATAACAATCTGTCAA+GGG | - | chr5_3:69113308-69113327 | Msa0827690:intron | 30.0% | |
| TGGAGAGAGAATGATAATTT+AGG | - | chr5_3:69113338-69113357 | Msa0827690:intron | 30.0% | |
| GGAGAGAGAATGATAATTTA+GGG | - | chr5_3:69113339-69113358 | Msa0827690:intron | 30.0% | |
| ! | TAATTTAGGGACTAAGTTGA+TGG | - | chr5_3:69113352-69113371 | Msa0827690:intron | 30.0% |
| ATATCCATATTGTGTTGTCA+AGG | - | chr5_3:69113450-69113469 | Msa0827690:intron | 30.0% | |
| CATAGAGATTGTTATAGTCA+AGG | + | chr5_3:69113604-69113623 | None:intergenic | 30.0% | |
| ! | CACATTTCATGTTGGTAAAT+TGG | + | chr5_3:69113685-69113704 | None:intergenic | 30.0% |
| CAATTTACCAACATGAAATG+TGG | - | chr5_3:69113683-69113702 | Msa0827690:intron | 30.0% | |
| TTTCCAAAATGCAGTGAATT+TGG | - | chr5_3:69113767-69113786 | Msa0827690:intron | 30.0% | |
| ! | TATCCAAATTCACTGCATTT+TGG | + | chr5_3:69113773-69113792 | None:intergenic | 30.0% |
| GAATTTGGATAATAATTGCG+TGG | - | chr5_3:69113782-69113801 | Msa0827690:intron | 30.0% | |
| TTGAATGTAATCACATGTGT+TGG | - | chr5_3:69113921-69113940 | Msa0827690:intron | 30.0% | |
| !!! | CTACAAAGGTACCAAATTTT+GGG | - | chr5_3:69113999-69114018 | Msa0827690:intron | 30.0% |
| !!! | ACCGTTTTTTTATCTCAGTT+AGG | + | chr5_3:69114050-69114069 | None:intergenic | 30.0% |
| AAAATGTTGCATAACAAAGG+TGG | - | chr5_3:69114167-69114186 | Msa0827690:intron | 30.0% | |
| CCGTGAATAAATACAATAGA+TGG | - | chr5_3:69114199-69114218 | Msa0827690:intron | 30.0% | |
| TACGAAGACCTTAATCTTAA+TGG | - | chr5_3:69114254-69114273 | Msa0827690:intron | 30.0% | |
| AAATAAAAGGGGGAGAAAAA+AGG | + | chr5_3:69114531-69114550 | None:intergenic | 30.0% | |
| !!! | CCCTTTTATTTTACATGCAT+TGG | - | chr5_3:69114540-69114559 | Msa0827690:intron | 30.0% |
| ATGTGACATCAAAATTGTAG+TGG | + | chr5_3:69114644-69114663 | None:intergenic | 30.0% | |
| AACTACACTAAATCTGGATA+TGG | + | chr5_3:69114915-69114934 | None:intergenic | 30.0% | |
| AAGGAATATTTGTCTTCATC+TGG | - | chr5_3:69115422-69115441 | Msa0827690:intron | 30.0% | |
| ! | GTTTCTAAAGAATGTTGCAT+TGG | - | chr5_3:69115455-69115474 | Msa0827690:intron | 30.0% |
| ACAATTTCAACGACCAATTT+GGG | + | chr5_3:69115487-69115506 | None:intergenic | 30.0% | |
| TACAATTTCAACGACCAATT+TGG | + | chr5_3:69115488-69115507 | None:intergenic | 30.0% | |
| AAATTGGTCGTTGAAATTGT+AGG | - | chr5_3:69115487-69115506 | Msa0827690:intron | 30.0% | |
| TGTAATTTCAGGGATAACTT+TGG | + | chr5_3:69115549-69115568 | None:intergenic | 30.0% | |
| ! | GATTAACATTTTGCAATTCC+AGG | - | chr5_3:69115715-69115734 | Msa0827690:intron | 30.0% |
| CAATATTTCAAAATGATCCC+TGG | + | chr5_3:69115736-69115755 | None:intergenic | 30.0% | |
| ! | TATTGATAATATGGAGGACT+AGG | - | chr5_3:69115751-69115770 | Msa0827690:intron | 30.0% |
| TACAATTTCAAAGACCAAGT+TGG | - | chr5_3:69115786-69115805 | Msa0827690:intron | 30.0% | |
| GATTATCTTAACCGTTACAA+GGG | - | chr5_3:69115885-69115904 | Msa0827690:intron | 30.0% | |
| AAATTGAATGCTTAATGCCA+AGG | + | chr5_3:69115932-69115951 | None:intergenic | 30.0% | |
| TTGGCATTAAGCATTCAATT+TGG | - | chr5_3:69115931-69115950 | Msa0827690:intron | 30.0% | |
| ACTTCAAAAAAACTGTCCAA+GGG | + | chr5_3:69115996-69116015 | None:intergenic | 30.0% | |
| TACTTCAAAAAAACTGTCCA+AGG | + | chr5_3:69115997-69116016 | None:intergenic | 30.0% | |
| TGTAAACAATGACTATCGTT+TGG | - | chr5_3:69116129-69116148 | Msa0827690:five_prime_UTR | 30.0% | |
| ACATCAATATCATTGCATCA+TGG | + | chr5_3:69116159-69116178 | None:intergenic | 30.0% | |
| GAAGAAATCGAAGTTGAGAT+AGG | + | chr5_3:69112781-69112800 | None:intergenic | 35.0% | |
| TAAACAGAAAGACCAGGATT+CGG | - | chr5_3:69113095-69113114 | Msa0827690:intron | 35.0% | |
| ATATATTGTGCTCTGTTGCA+TGG | - | chr5_3:69113167-69113186 | Msa0827690:intron | 35.0% | |
| AATCTGTCAAGGGACTAATT+TGG | - | chr5_3:69113318-69113337 | Msa0827690:intron | 35.0% | |
| TTGTCCTTGACAACACAATA+TGG | + | chr5_3:69113457-69113476 | None:intergenic | 35.0% | |
| TGCTGGAACTATTGTTTAGA+TGG | - | chr5_3:69113547-69113566 | Msa0827690:intron | 35.0% | |
| ! | CGCTTTTGATCAAAGACATT+AGG | + | chr5_3:69113973-69113992 | None:intergenic | 35.0% |
| ! | ATGTCTTTGATCAAAAGCGT+TGG | - | chr5_3:69113974-69113993 | Msa0827690:intron | 35.0% |
| !!! | GCTACAAAGGTACCAAATTT+TGG | - | chr5_3:69113998-69114017 | Msa0827690:intron | 35.0% |
| AGATAAAAAAACGGTTGTCG+TGG | - | chr5_3:69114055-69114074 | Msa0827690:intron | 35.0% | |
| AGATTAAGGTCTTCGTACTA+TGG | + | chr5_3:69114251-69114270 | None:intergenic | 35.0% | |
| GATGTTCAATGTTCAAACTC+TGG | + | chr5_3:69114343-69114362 | None:intergenic | 35.0% | |
| GCATCAGAAAGAGTTTGAAA+AGG | + | chr5_3:69114365-69114384 | None:intergenic | 35.0% | |
| GCAAATACCTTAATCCATGA+TGG | - | chr5_3:69114487-69114506 | Msa0827690:intron | 35.0% | |
| AACAATAATGCACTCCATCA+TGG | + | chr5_3:69114504-69114523 | None:intergenic | 35.0% | |
| ! | TTCCTTAATCTTTTGTAGGG+AGG | + | chr5_3:69114727-69114746 | None:intergenic | 35.0% |
| TCCCTACAAAAGATTAAGGA+AGG | - | chr5_3:69114726-69114745 | Msa0827690:intron | 35.0% | |
| ! | CCCTTCCTTAATCTTTTGTA+GGG | + | chr5_3:69114730-69114749 | None:intergenic | 35.0% |
| CCCTACAAAAGATTAAGGAA+GGG | - | chr5_3:69114727-69114746 | Msa0827690:intron | 35.0% | |
| ! | TCCCTTCCTTAATCTTTTGT+AGG | + | chr5_3:69114731-69114750 | None:intergenic | 35.0% |
| AAGCATTTGACCAATAGTGA+AGG | - | chr5_3:69115071-69115090 | Msa0827690:intron | 35.0% | |
| !!! | TTTCAAGGTTTTGAGAGGAT+GGG | - | chr5_3:69115100-69115119 | Msa0827690:intron | 35.0% |
| TCAAGACAGCAGTTATGAAA+GGG | - | chr5_3:69115141-69115160 | Msa0827690:intron | 35.0% | |
| TATGAAAGGGGTTAGATTAG+CGG | - | chr5_3:69115154-69115173 | Msa0827690:intron | 35.0% | |
| !! | TTTTGAGTGATCCAGACAAA+AGG | - | chr5_3:69115346-69115365 | Msa0827690:intron | 35.0% |
| ! | AGGAGAGAGTATGACATAAA+CGG | - | chr5_3:69115366-69115385 | Msa0827690:intron | 35.0% |
| ! | GCATTGGTAAATACCCAAAT+TGG | - | chr5_3:69115471-69115490 | Msa0827690:intron | 35.0% |
| AATCAAATTCATCCCTCCAT+TGG | - | chr5_3:69115576-69115595 | Msa0827690:intron | 35.0% | |
| TGAATAGCAGATCCAAATAG+AGG | - | chr5_3:69115683-69115702 | Msa0827690:CDS | 35.0% | |
| GAATAGCAGATCCAAATAGA+GGG | - | chr5_3:69115684-69115703 | Msa0827690:CDS | 35.0% | |
| ATCAAGTTTGTCCCTCTATT+TGG | + | chr5_3:69115698-69115717 | None:intergenic | 35.0% | |
| GGATTATCTTAACCGTTACA+AGG | - | chr5_3:69115884-69115903 | Msa0827690:intron | 35.0% | |
| TCAATATGAGACCCTTGTAA+CGG | + | chr5_3:69115899-69115918 | None:intergenic | 35.0% | |
| CTTCAAAAAAACTGTCCAAG+GGG | + | chr5_3:69115995-69116014 | None:intergenic | 35.0% | |
| !!! | GACAGTTTTTTTGAAGTACC+CGG | - | chr5_3:69115999-69116018 | Msa0827690:CDS | 35.0% |
| TGAACGAGAATATGAGTGGT+CGG | + | chr5_3:69112658-69112677 | None:intergenic | 40.0% | |
| AGAGTGAACGAGAATATGAG+TGG | + | chr5_3:69112662-69112681 | None:intergenic | 40.0% | |
| CGAAGTTGAGATAGGAATGT+GGG | + | chr5_3:69112773-69112792 | None:intergenic | 40.0% | |
| TCGAAGTTGAGATAGGAATG+TGG | + | chr5_3:69112774-69112793 | None:intergenic | 40.0% | |
| ATTAAGATGAAGGACGGTGA+GGG | + | chr5_3:69112835-69112854 | None:intergenic | 40.0% | |
| AATTAAGATGAAGGACGGTG+AGG | + | chr5_3:69112836-69112855 | None:intergenic | 40.0% | |
| ! | TCCTGGTCTTTCTGTTTATC+CGG | + | chr5_3:69113093-69113112 | None:intergenic | 40.0% |
| TATATCTTGAAACCGTGACG+TGG | + | chr5_3:69113121-69113140 | None:intergenic | 40.0% | |
| AGATATAAATGAGGCCTACC+AGG | - | chr5_3:69113134-69113153 | Msa0827690:intron | 40.0% | |
| GATATAAATGAGGCCTACCA+GGG | - | chr5_3:69113135-69113154 | Msa0827690:intron | 40.0% | |
| ! | GTGAGTTGAAATCTGAGCAT+CGG | + | chr5_3:69113653-69113672 | None:intergenic | 40.0% |
| ! | GTAATCACATGTGTTGGTGT+CGG | - | chr5_3:69113927-69113946 | Msa0827690:intron | 40.0% |
| !!! | CAAAGGTACCAAATTTTGGG+TGG | - | chr5_3:69114002-69114021 | Msa0827690:intron | 40.0% |
| CGACTTTACCACCCAAAATT+TGG | + | chr5_3:69114013-69114032 | None:intergenic | 40.0% | |
| AGTTTGAGTAGCATCTACTG+AGG | - | chr5_3:69114133-69114152 | Msa0827690:intron | 40.0% | |
| TAGCTAAAGCGATTGAGCTA+GGG | + | chr5_3:69114387-69114406 | None:intergenic | 40.0% | |
| ! | ATGCACTCCATCATGGATTA+AGG | + | chr5_3:69114497-69114516 | None:intergenic | 40.0% |
| CTCCTCCCTACAAAAGATTA+AGG | - | chr5_3:69114722-69114741 | Msa0827690:intron | 40.0% | |
| TTAAGGAAGGGAACGAAAAG+AGG | - | chr5_3:69114739-69114758 | Msa0827690:intron | 40.0% | |
| TTGGGGGAGAAAAGAGAATA+GGG | + | chr5_3:69114785-69114804 | None:intergenic | 40.0% | |
| TAGGAGAACAGGTAATCTTG+GGG | + | chr5_3:69114802-69114821 | None:intergenic | 40.0% | |
| GTAGGAGAACAGGTAATCTT+GGG | + | chr5_3:69114803-69114822 | None:intergenic | 40.0% | |
| AGTAGGAGAACAGGTAATCT+TGG | + | chr5_3:69114804-69114823 | None:intergenic | 40.0% | |
| AAGATTACCTGTTCTCCTAC+TGG | - | chr5_3:69114803-69114822 | Msa0827690:intron | 40.0% | |
| GAAAGGACAACCTTCACTAT+TGG | + | chr5_3:69115084-69115103 | None:intergenic | 40.0% | |
| TAGTGAAGGTTGTCCTTTCA+AGG | - | chr5_3:69115085-69115104 | Msa0827690:intron | 40.0% | |
| !!! | TGTCCTTTCAAGGTTTTGAG+AGG | - | chr5_3:69115095-69115114 | Msa0827690:intron | 40.0% |
| CATCCTCTCAAAACCTTGAA+AGG | + | chr5_3:69115101-69115120 | None:intergenic | 40.0% | |
| !!! | CTTTCAAGGTTTTGAGAGGA+TGG | - | chr5_3:69115099-69115118 | Msa0827690:intron | 40.0% |
| GTCAAGACAGCAGTTATGAA+AGG | - | chr5_3:69115140-69115159 | Msa0827690:intron | 40.0% | |
| CAAGACAGCAGTTATGAAAG+GGG | - | chr5_3:69115142-69115161 | Msa0827690:intron | 40.0% | |
| ! | TCATACTCTCTCCTTTTGTC+TGG | + | chr5_3:69115360-69115379 | None:intergenic | 40.0% |
| ! | GGAGAGAGTATGACATAAAC+GGG | - | chr5_3:69115367-69115386 | Msa0827690:intron | 40.0% |
| TCCCTCCATTGGTATGTTTA+CGG | - | chr5_3:69115587-69115606 | Msa0827690:intron | 40.0% | |
| TCCGTAAACATACCAATGGA+GGG | + | chr5_3:69115591-69115610 | None:intergenic | 40.0% | |
| CTAGTCCGTAAACATACCAA+TGG | + | chr5_3:69115595-69115614 | None:intergenic | 40.0% | |
| GAGTGAGTAAGTATCCAACT+TGG | + | chr5_3:69115803-69115822 | None:intergenic | 40.0% | |
| !! | GGTCTCATATTGACTTGCAA+TGG | - | chr5_3:69115906-69115925 | Msa0827690:intron | 40.0% |
| !! | ATATTGACTTGCAATGGCCT+TGG | - | chr5_3:69115912-69115931 | Msa0827690:intron | 40.0% |
| AGATGCTTATGATGTCCTAG+AGG | - | chr5_3:69116051-69116070 | Msa0827690:CDS | 40.0% | |
| ! | AAGTCTGAAGCTATTCCTCT+AGG | + | chr5_3:69116069-69116088 | None:intergenic | 40.0% |
| ATGATTAAGCTTGCGGTGAG+TGG | + | chr5_3:69112608-69112627 | None:intergenic | 45.0% | |
| ACTCTCCTCAACCATGATGT+GGG | - | chr5_3:69112677-69112696 | Msa0827690:three_prime_UTR | 45.0% | |
| CTCAACCATGATGTGGGAAT+GGG | - | chr5_3:69112683-69112702 | Msa0827690:three_prime_UTR | 45.0% | |
| TTCTTCCCATTCCCACATCA+TGG | + | chr5_3:69112691-69112710 | None:intergenic | 45.0% | |
| TTGAGATAGGAATGTGGGTC+GGG | + | chr5_3:69112768-69112787 | None:intergenic | 45.0% | |
| GTTGAGATAGGAATGTGGGT+CGG | + | chr5_3:69112769-69112788 | None:intergenic | 45.0% | |
| !! | AGTGGATTACGATGCAACTG+AGG | - | chr5_3:69112928-69112947 | Msa0827690:intron | 45.0% |
| GAATACACAGAAATGGCACC+CGG | - | chr5_3:69113071-69113090 | Msa0827690:intron | 45.0% | |
| ! | CCTGGTCTTTCTGTTTATCC+GGG | + | chr5_3:69113092-69113111 | None:intergenic | 45.0% |
| ! | GCTGACTTAGTTGTGCATCT+TGG | - | chr5_3:69113623-69113642 | Msa0827690:intron | 45.0% |
| CAATAAAGGCAGCGATGCTT+TGG | - | chr5_3:69113823-69113842 | Msa0827690:intron | 45.0% | |
| !! | CAAAAGCGTTGGTGCTACAA+AGG | - | chr5_3:69113985-69114004 | Msa0827690:intron | 45.0% |
| GTTGTCGTGGATGAGTAGTA+GGG | - | chr5_3:69114068-69114087 | Msa0827690:intron | 45.0% | |
| CCTTGTGACGAGAAGAACAA+GGG | - | chr5_3:69114222-69114241 | Msa0827690:intron | 45.0% | |
| GTAGCTAAAGCGATTGAGCT+AGG | + | chr5_3:69114388-69114407 | None:intergenic | 45.0% | |
| AGCTTCATGTGCTCAATCTG+AGG | + | chr5_3:69114455-69114474 | None:intergenic | 45.0% | |
| CGCTCATCCTTATCAGAGAT+CGG | - | chr5_3:69114567-69114586 | Msa0827690:intron | 45.0% | |
| GAGAATAGGGGCTAAAGCTT+GGG | + | chr5_3:69114772-69114791 | None:intergenic | 45.0% | |
| AGAGAATAGGGGCTAAAGCT+TGG | + | chr5_3:69114773-69114792 | None:intergenic | 45.0% | |
| TGGGGGAGAAAAGAGAATAG+GGG | + | chr5_3:69114784-69114803 | None:intergenic | 45.0% | |
| CTTGGGGGAGAAAAGAGAAT+AGG | + | chr5_3:69114786-69114805 | None:intergenic | 45.0% | |
| AGGAGAACAGGTAATCTTGG+GGG | + | chr5_3:69114801-69114820 | None:intergenic | 45.0% | |
| ! | GTTTTCCACAACAAGCCAGT+AGG | + | chr5_3:69114821-69114840 | None:intergenic | 45.0% |
| !! | ACTGGCTTGTTGTGGAAAAC+TGG | - | chr5_3:69114821-69114840 | Msa0827690:intron | 45.0% |
| TGGATATGGTAACAGTCAGC+TGG | + | chr5_3:69114901-69114920 | None:intergenic | 45.0% | |
| !!! | GGTTTTGAGAGGATGGGTTA+TGG | - | chr5_3:69115106-69115125 | Msa0827690:intron | 45.0% |
| GTCCGTAAACATACCAATGG+AGG | + | chr5_3:69115592-69115611 | None:intergenic | 45.0% | |
| CACTCTCCTCAACCATGATG+TGG | - | chr5_3:69112676-69112695 | Msa0827690:three_prime_UTR | 50.0% | |
| CCATTCCCACATCATGGTTG+AGG | + | chr5_3:69112685-69112704 | None:intergenic | 50.0% | |
| CCTCAACCATGATGTGGGAA+TGG | - | chr5_3:69112682-69112701 | Msa0827690:three_prime_UTR | 50.0% | |
| !!! | AATTTGGTCGGGTTTTGGGG+AGG | + | chr5_3:69112745-69112764 | None:intergenic | 50.0% |
| ! | GGGAATTTGGTCGGGTTTTG+GGG | + | chr5_3:69112748-69112767 | None:intergenic | 50.0% |
| ! | CGGGAATTTGGTCGGGTTTT+GGG | + | chr5_3:69112749-69112768 | None:intergenic | 50.0% |
| ! | TCGGGAATTTGGTCGGGTTT+TGG | + | chr5_3:69112750-69112769 | None:intergenic | 50.0% |
| ATGTGGGTCGGGAATTTGGT+CGG | + | chr5_3:69112757-69112776 | None:intergenic | 50.0% | |
| AGGAATGTGGGTCGGGAATT+TGG | + | chr5_3:69112761-69112780 | None:intergenic | 50.0% | |
| CTCTGCTCTCTCTAAACCCA+AGG | - | chr5_3:69112800-69112819 | Msa0827690:three_prime_UTR | 50.0% | |
| !!! | GTGAGGGTTTTGGGAACCTT+GGG | + | chr5_3:69112819-69112838 | None:intergenic | 50.0% |
| ! | TGAAGGACGGTGAGGGTTTT+GGG | + | chr5_3:69112828-69112847 | None:intergenic | 50.0% |
| ! | ATGAAGGACGGTGAGGGTTT+TGG | + | chr5_3:69112829-69112848 | None:intergenic | 50.0% |
| CCCGGATAAACAGAAAGACC+AGG | - | chr5_3:69113089-69113108 | Msa0827690:intron | 50.0% | |
| GGTTGTCGTGGATGAGTAGT+AGG | - | chr5_3:69114067-69114086 | Msa0827690:intron | 50.0% | |
| GCCTTGTGACGAGAAGAACA+AGG | - | chr5_3:69114221-69114240 | Msa0827690:intron | 50.0% | |
| CCCTTGTTCTTCTCGTCACA+AGG | + | chr5_3:69114225-69114244 | None:intergenic | 50.0% | |
| TGTGACGAGAAGAACAAGGG+AGG | - | chr5_3:69114225-69114244 | Msa0827690:intron | 50.0% | |
| AGGCTAGGCATGTACAACCT+TGG | + | chr5_3:69114435-69114454 | None:intergenic | 50.0% | |
| ! | CATGTGCTCAATCTGAGGCT+AGG | + | chr5_3:69114450-69114469 | None:intergenic | 50.0% |
| CATCCTTATCAGAGATCGGC+TGG | - | chr5_3:69114571-69114590 | Msa0827690:intron | 50.0% | |
| CAACCAGCCGATCTCTGATA+AGG | + | chr5_3:69114577-69114596 | None:intergenic | 50.0% | |
| ! | AAGAGTGTATCATCCCTCCC+TGG | - | chr5_3:69114698-69114717 | Msa0827690:intron | 50.0% |
| ! | CTTTTGTAGGGAGGAGACCA+GGG | + | chr5_3:69114718-69114737 | None:intergenic | 50.0% |
| ! | TCTTTTGTAGGGAGGAGACC+AGG | + | chr5_3:69114719-69114738 | None:intergenic | 50.0% |
| CAACAAGCCAGTAGGAGAAC+AGG | + | chr5_3:69114813-69114832 | None:intergenic | 50.0% | |
| !! | GTTCTCCTACTGGCTTGTTG+TGG | - | chr5_3:69114813-69114832 | Msa0827690:intron | 50.0% |
| AACAGGCAACAGCACAAGTC+AGG | + | chr5_3:69115220-69115239 | None:intergenic | 50.0% | |
| ! | TGACTTGTGCTGTTGCCTGT+TGG | - | chr5_3:69115219-69115238 | Msa0827690:intron | 50.0% |
| ! | GATGTGGATGTCTGAGATGC+TGG | + | chr5_3:69115967-69115986 | None:intergenic | 50.0% |
| ! | AAAAACTGTCCAAGGGGCAC+TGG | + | chr5_3:69115989-69116008 | None:intergenic | 50.0% |
| !! | TGATAATGGCATGCAGTGCC+GGG | + | chr5_3:69116020-69116039 | None:intergenic | 50.0% |
| !! | CTGATAATGGCATGCAGTGC+CGG | + | chr5_3:69116021-69116040 | None:intergenic | 50.0% |
| TGTGGGTCGGGAATTTGGTC+GGG | + | chr5_3:69112756-69112775 | None:intergenic | 55.0% | |
| !!! | GGTGAGGGTTTTGGGAACCT+TGG | + | chr5_3:69112820-69112839 | None:intergenic | 55.0% |
| GGACGGCCCACATTTCATGT+TGG | + | chr5_3:69113693-69113712 | None:intergenic | 55.0% | |
| AATGTGGGCCGTCCGATGAT+AGG | - | chr5_3:69113699-69113718 | Msa0827690:intron | 55.0% | |
| AGTCCAGCCCGTCCTATCAT+CGG | + | chr5_3:69113714-69113733 | None:intergenic | 55.0% | |
| TTCCTGCATCTGTGCACCTC+GGG | + | chr5_3:69113738-69113757 | None:intergenic | 55.0% | |
| GTTCCTGCATCTGTGCACCT+CGG | + | chr5_3:69113739-69113758 | None:intergenic | 55.0% | |
| AGGCAACAGCACAAGTCAGG+AGG | + | chr5_3:69115217-69115236 | None:intergenic | 55.0% | |
| ACCAGGATTCGGCCACGTCA+CGG | - | chr5_3:69113106-69113125 | Msa0827690:intron | 60.0% | |
| TGGGCCGTCCGATGATAGGA+CGG | - | chr5_3:69113703-69113722 | Msa0827690:intron | 60.0% | |
| CAGCCCGTCCTATCATCGGA+CGG | + | chr5_3:69113710-69113729 | None:intergenic | 60.0% | |
| TGTAGGGAGGAGACCAGGGA+GGG | + | chr5_3:69114714-69114733 | None:intergenic | 60.0% | |
| TTGTAGGGAGGAGACCAGGG+AGG | + | chr5_3:69114715-69114734 | None:intergenic | 60.0% | |
| CATCCACATCCAGTGCCCCT+TGG | - | chr5_3:69115977-69115996 | Msa0827690:CDS | 60.0% | |
| !! | TGTCCAAGGGGCACTGGATG+TGG | + | chr5_3:69115983-69116002 | None:intergenic | 60.0% |
| ACCGTGACGTGGCCGAATCC+TGG | + | chr5_3:69113110-69113129 | None:intergenic | 65.0% | |
| GGGCCGTCCGATGATAGGAC+GGG | - | chr5_3:69113704-69113723 | Msa0827690:intron | 65.0% | |
| CGTCCGATGATAGGACGGGC+TGG | - | chr5_3:69113708-69113727 | Msa0827690:intron | 65.0% | |
| TGCCCGAGGTGCACAGATGC+AGG | - | chr5_3:69113733-69113752 | Msa0827690:intron | 65.0% | |
| !! | AGGACGGGCTGGACTGCCCG+AGG | - | chr5_3:69113719-69113738 | Msa0827690:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 69112598 | 69116191 | 69112598 | ID=Msa0827690;Name=Msa0827690 |
| chr5_3 | mRNA | 69112598 | 69116191 | 69112598 | ID=Msa0827690-mRNA-1;Parent=Msa0827690;Name=Msa0827690-mRNA-1;_AED=0.37;_eAED=0.37;_QI=92|0.75|0.8|1|0.5|0.6|5|235|136 |
| chr5_3 | exon | 69112598 | 69112904 | 69112598 | ID=Msa0827690-mRNA-1:exon:21753;Parent=Msa0827690-mRNA-1 |
| chr5_3 | exon | 69113391 | 69113443 | 69113391 | ID=Msa0827690-mRNA-1:exon:21752;Parent=Msa0827690-mRNA-1 |
| chr5_3 | exon | 69115633 | 69115708 | 69115633 | ID=Msa0827690-mRNA-1:exon:21751;Parent=Msa0827690-mRNA-1 |
| chr5_3 | exon | 69115804 | 69115881 | 69115804 | ID=Msa0827690-mRNA-1:exon:21750;Parent=Msa0827690-mRNA-1 |
| chr5_3 | exon | 69115968 | 69116191 | 69115968 | ID=Msa0827690-mRNA-1:exon:21749;Parent=Msa0827690-mRNA-1 |
| chr5_3 | five_prime_UTR | 69116100 | 69116191 | 69116100 | ID=Msa0827690-mRNA-1:five_prime_utr;Parent=Msa0827690-mRNA-1 |
| chr5_3 | CDS | 69115968 | 69116099 | 69115968 | ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1 |
| chr5_3 | CDS | 69115804 | 69115881 | 69115804 | ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1 |
| chr5_3 | CDS | 69115633 | 69115708 | 69115633 | ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1 |
| chr5_3 | CDS | 69113391 | 69113443 | 69113391 | ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1 |
| chr5_3 | CDS | 69112833 | 69112904 | 69112833 | ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1 |
| chr5_3 | three_prime_UTR | 69112598 | 69112832 | 69112598 | ID=Msa0827690-mRNA-1:three_prime_utr;Parent=Msa0827690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
