AlfalfaGEDB | Msa0827690

M. sativa cultivar zhongmu-4 / Msa0827690

KEGG: -
GO: -
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827690	AES98216.1	87.671	146	8	3	1	136	1	146	6.99e-84	252

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827690	sp\|Q24331\|TID_DROVI	46.988	83	44	0	36	118	71	153	8.31e-17	79.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827690	G7KBI1	87.671	146	8	3	1	136	1	146	3.34e-84	252

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037270	Msa0827690	0.837932	3.882314e-57	-8.615850e-47
Msa0064490	Msa0827690	0.811367	7.252623e-51	-8.615850e-47
Msa0065520	Msa0827690	0.807419	5.101830e-50	-8.615850e-47
Msa0081120	Msa0827690	0.852883	3.446252e-61	-8.615850e-47
Msa0086620	Msa0827690	0.802015	6.856476e-49	-8.615850e-47
Msa0089700	Msa0827690	0.812293	4.560067e-51	-8.615850e-47
Msa0093360	Msa0827690	0.808199	3.483391e-50	-8.615850e-47
Msa0095890	Msa0827690	0.801386	9.226832e-49	-8.615850e-47
Msa0175210	Msa0827690	0.802781	4.767537e-49	-8.615850e-47
Msa0207250	Msa0827690	0.841055	5.991081e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827690	MtrunA17_Chr5g0427221	87.671	146	8	3	1	136	1	146	6.43e-88	252
Msa0827690	MtrunA17_Chr4g0021141	62.000	100	31	2	41	133	18	117	2.39e-39	129
Msa0827690	MtrunA17_Chr2g0282761	56.250	64	27	1	45	107	4	67	1.37e-16	74.3
Msa0827690	MtrunA17_Chr3g0138471	54.688	64	28	1	45	107	4	67	1.93e-16	73.9
Msa0827690	MtrunA17_Chr2g0282741	53.125	64	29	1	45	107	4	67	2.29e-16	73.9
Msa0827690	MtrunA17_Chr7g0263971	52.174	69	32	1	40	107	364	432	6.21e-16	73.2
Msa0827690	MtrunA17_Chr4g0040501	50.000	64	31	1	45	107	4	67	2.68e-15	70.9
Msa0827690	MtrunA17_Chr4g0006391	50.000	64	31	1	45	107	4	67	7.40e-15	69.7
Msa0827690	MtrunA17_Chr1g0159491	46.479	71	38	0	40	110	1	71	8.73e-15	64.7
Msa0827690	MtrunA17_Chr5g0426951	40.964	83	49	0	25	107	63	145	1.49e-14	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827690	AT2G33735.1	63.636	110	33	2	33	136	11	119	4.56e-42	135
Msa0827690	AT2G33735.2	63.636	110	33	2	33	136	11	119	4.56e-42	135
Msa0827690	AT5G16650.1	65.347	101	28	2	41	134	7	107	2.87e-40	131
Msa0827690	AT5G16650.2	65.347	101	28	2	41	134	7	107	3.82e-40	132
Msa0827690	AT3G47940.1	52.941	68	30	1	45	110	4	71	2.18e-16	74.3
Msa0827690	AT5G25530.2	53.125	64	29	1	45	107	4	67	6.08e-16	73.2
Msa0827690	AT1G59725.1	52.308	65	29	1	45	107	4	68	4.47e-15	70.5
Msa0827690	AT4G28480.2	51.562	64	30	1	45	107	4	67	6.22e-15	69.7
Msa0827690	AT4G28480.1	51.562	64	30	1	45	107	4	67	8.23e-15	70.1
Msa0827690	AT5G01390.4	49.254	67	33	1	45	110	4	70	8.84e-15	68.6

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Find 55 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGAATGCTTAATGCCA+AGG	0.566829	5_3:+69112838	None:intergenic
AAGTCTGAAGCTATTCCTCT+AGG	0.547428	5_3:+69112701	None:intergenic
ACATCAATATCATTGCATCA+TGG	0.588336	5_3:+69112611	None:intergenic
ACCAGGATTCGGCCACGTCA+CGG	0.591695	5_3:-69115661	Msa0827690:CDS
ACCGTGACGTGGCCGAATCC+TGG	0.424294	5_3:+69115660	None:intergenic
ACGGTTTCAAGATATAAATG+AGG	0.624622	5_3:-69115642	Msa0827690:CDS
ACTCTCCTCAACCATGATGT+GGG	0.607401	5_3:-69116090	Msa0827690:exon
AGAGTGAACGAGAATATGAG+TGG	0.686675	5_3:+69116108	None:intergenic
AGATATAAATGAGGCCTACC+AGG	0.484166	5_3:-69115633	Msa0827690:CDS
AGATGCTTATGATGTCCTAG+AGG	0.685240	5_3:-69112716	Msa0827690:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACGAAATGATTAAGCTTG+CGG	+	chr5_3:69112615-69112634	None:intergenic	30.0%
TAATTACATTCGTCTTGCTT+TGG	-	chr5_3:69112964-69112983	Msa0827690:intron	30.0%
ATCCCAAAACGAAATTAGAA+AGG	+	chr5_3:69113023-69113042	None:intergenic	30.0%
ACGGTTTCAAGATATAAATG+AGG	-	chr5_3:69113125-69113144	Msa0827690:intron	30.0%
AAGTACATAACAATCTGTCA+AGG	-	chr5_3:69113307-69113326	Msa0827690:intron	30.0%
AGTACATAACAATCTGTCAA+GGG	-	chr5_3:69113308-69113327	Msa0827690:intron	30.0%
TGGAGAGAGAATGATAATTT+AGG	-	chr5_3:69113338-69113357	Msa0827690:intron	30.0%
GGAGAGAGAATGATAATTTA+GGG	-	chr5_3:69113339-69113358	Msa0827690:intron	30.0%
ATATCCATATTGTGTTGTCA+AGG	-	chr5_3:69113450-69113469	Msa0827690:intron	30.0%
CATAGAGATTGTTATAGTCA+AGG	+	chr5_3:69113604-69113623	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	69112598	69116191	69112598	ID=Msa0827690;Name=Msa0827690
chr5_3	mRNA	69112598	69116191	69112598	ID=Msa0827690-mRNA-1;Parent=Msa0827690;Name=Msa0827690-mRNA-1;_AED=0.37;_eAED=0.37;_QI=92\|0.75\|0.8\|1\|0.5\|0.6\|5\|235\|136
chr5_3	exon	69112598	69112904	69112598	ID=Msa0827690-mRNA-1:exon:21753;Parent=Msa0827690-mRNA-1
chr5_3	exon	69113391	69113443	69113391	ID=Msa0827690-mRNA-1:exon:21752;Parent=Msa0827690-mRNA-1
chr5_3	exon	69115633	69115708	69115633	ID=Msa0827690-mRNA-1:exon:21751;Parent=Msa0827690-mRNA-1
chr5_3	exon	69115804	69115881	69115804	ID=Msa0827690-mRNA-1:exon:21750;Parent=Msa0827690-mRNA-1
chr5_3	exon	69115968	69116191	69115968	ID=Msa0827690-mRNA-1:exon:21749;Parent=Msa0827690-mRNA-1
chr5_3	five_prime_UTR	69116100	69116191	69116100	ID=Msa0827690-mRNA-1:five_prime_utr;Parent=Msa0827690-mRNA-1
chr5_3	CDS	69115968	69116099	69115968	ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1
chr5_3	CDS	69115804	69115881	69115804	ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1
chr5_3	CDS	69115633	69115708	69115633	ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1
chr5_3	CDS	69113391	69113443	69113391	ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1
chr5_3	CDS	69112833	69112904	69112833	ID=Msa0827690-mRNA-1:cds;Parent=Msa0827690-mRNA-1
chr5_3	three_prime_UTR	69112598	69112832	69112598	ID=Msa0827690-mRNA-1:three_prime_utr;Parent=Msa0827690-mRNA-1

Gene Sequence

>Msa0827690

ATGATGTGGGAATGGGAAGAAGAAGAAGAACAACAACAATTTCACGACAACACCTCCCCAAAACCCGACCAAATTCCCGACCCACATTCCTATCTCAACTTCGATTTCTTCTCTGCTCTCTCTAAACCCAAGGATTATTACAAGATATTGGAAGTGGATTACGATGCAACTGAGGATACTATTCGTTCTAATTACATTCGTCTTGCTTTGAAATGGCACCCGGATAAACAGAAAGACCAGGATTCGGCCACGTCACGGTTTCAAGATATAAATGAGGCCTACCAGGTTTTGAGTGATCCAGACAAAAGGAGAGAGTATGACATAAACGGGATGCGTTACGATTATCTTAACCGTTACAAGGGTCTCATATTGACTTGCAATGGCCTTGGCATTAAGCATTCAATTTGGTAA

Protein sequence

>Msa0827690

MMWEWEEEEEQQQFHDNTSPKPDQIPDPHSYLNFDFFSALSKPKDYYKILEVDYDATEDTIRSNYIRLALKWHPDKQKDQDSATSRFQDINEAYQVLSDPDKRREYDINGMRYDYLNRYKGLILTCNGLGIKHSIW*