AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259450 MtrunA17_Chr2g0333871 97.241 290 7 1 1 289 1 290 0.0 566
Msa0259450 MtrunA17_Chr4g0001421 76.109 293 66 2 1 289 1 293 2.87e-157 440
Msa0259450 MtrunA17_Chr1g0210741 62.264 212 80 0 78 289 69 280 1.33e-97 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259450 AT1G16880.1 71.053 266 71 3 29 289 26 290 2.66e-133 379
Msa0259450 AT5G04740.1 62.736 212 79 0 78 289 90 301 3.03e-99 293
Msa0259450 AT1G16880.2 65.476 168 52 3 29 191 26 192 4.19e-69 213
Msa0259450 AT5G04740.2 59.664 119 48 0 171 289 82 200 2.04e-48 160
Msa0259450 AT3G01990.3 24.348 230 142 4 54 276 1 205 3.43e-13 69.3
Msa0259450 AT3G01990.2 24.348 230 142 4 54 276 1 205 4.08e-13 68.9
Msa0259450 AT3G01990.4 24.348 230 142 4 54 276 1 205 4.12e-13 69.3
Msa0259450 AT3G01990.7 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0259450 AT3G01990.5 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0259450 AT3G01990.6 24.348 230 142 4 54 276 1 205 5.50e-13 69.3
Msa0259450 AT3G01990.8 25.373 201 118 4 83 276 16 191 7.82e-13 68.2
Msa0259450 AT3G01990.9 25.373 201 118 4 83 276 16 191 1.10e-12 67.8
Msa0259450 AT3G01990.11 25.373 201 118 4 83 276 16 191 1.20e-12 68.2
Msa0259450 AT3G01990.10 25.373 201 118 4 83 276 16 191 1.22e-12 68.2
Msa0259450 AT3G01990.1 25.373 201 118 4 83 276 16 191 1.22e-12 68.2

Find 83 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGATCGGCCTGGATTAT+TGG 0.254008 2_2:-56493031 Msa0259450:CDS
CACAATATTGGCAATGCATT+TGG 0.274897 2_2:-56492430 Msa0259450:three_prime_UTR
TTGTAAAATGTAGGGGCTTT+TGG 0.296400 2_2:-56492824 Msa0259450:intron
AAGCTGCTCCTAGAGCTAAT+TGG 0.307671 2_2:+56493324 None:intergenic
TTAGCTCTAGGAGCAGCTTT+TGG 0.320063 2_2:-56493320 Msa0259450:CDS
GAATTCATCACCTGCTCCTT+TGG 0.338089 2_2:+56493287 None:intergenic
GCTATGGCTGCTTGCAGTCT+TGG 0.340320 2_2:-56494960 Msa0259450:CDS
TAATAACTTCTTCAGACCTT+TGG 0.343676 2_2:-56494919 Msa0259450:CDS
GAATATAATAACCACAATAT+TGG 0.357966 2_2:-56492442 Msa0259450:three_prime_UTR
AAGAGTTGAAGGATTTGAAA+AGG 0.370883 2_2:+56494998 None:intergenic
ATTAACATTGCTGTTGAATC+TGG 0.377217 2_2:-56492982 Msa0259450:CDS
TGACTAGTAAGTTTACAATA+TGG 0.378063 2_2:+56492322 None:intergenic
AACTTTGATTGCAGTGATAC+AGG 0.390474 2_2:-56493528 Msa0259450:intron
CTTGGGACTGAATGTTGTTA+AGG 0.403190 2_2:-56493697 Msa0259450:CDS
TACCTGCTGGAGAGGCTTGA+TGG 0.411055 2_2:+56492762 None:intergenic
AGTGGAATGTACTCCAGCTT+TGG 0.411870 2_2:+56492382 None:intergenic
AGCTGCTCCTAGAGCTAATT+GGG 0.415623 2_2:+56493325 None:intergenic
ACTCAATCAACAAATACAAT+TGG 0.416063 2_2:-56492362 Msa0259450:three_prime_UTR
TCTTGATCAATTATAACTAT+AGG 0.425614 2_2:+56494119 None:intergenic
TGTTAAGGCAAGCGTGTGTC+TGG 0.436304 2_2:-56493682 Msa0259450:CDS
GTGCTGCAGTTTGCTGTATG+TGG 0.438056 2_2:-56493058 Msa0259450:intron
GTGGAATGTACTCCAGCTTT+GGG 0.438611 2_2:+56492383 None:intergenic
AGCGTGTGTCTGGACTCTTC+TGG 0.440301 2_2:-56493672 Msa0259450:CDS
CAAGATGGAGGCACTGCAAA+TGG 0.440972 2_2:+56494890 None:intergenic
AAACTGGATTCCTCAGTTGT+AGG 0.450441 2_2:+56492511 None:intergenic
TCAATTATAACTATAGGTGT+TGG 0.463115 2_2:+56494125 None:intergenic
GGAAGATCCAGAGTTGTTAG+AGG 0.470609 2_2:-56493496 Msa0259450:CDS
TTCATCACCTGCTCCTTTGG+AGG 0.471072 2_2:+56493290 None:intergenic
ATCTCGACGACAGTTGCATC+AGG 0.471096 2_2:+56494089 None:intergenic
TGGATAGGAGCAGATAAAAC+TGG 0.481054 2_2:+56495263 None:intergenic
CCATCCTTGTTATGTTGGAT+AGG 0.484435 2_2:+56495248 None:intergenic
ACTGTCGTCGAGATTACCTT+TGG 0.487221 2_2:-56494080 Msa0259450:CDS
CAATTATAACTATAGGTGTT+GGG 0.488838 2_2:+56494126 None:intergenic
ATTACCTTTGGTGATCGCCT+TGG 0.489910 2_2:-56494068 Msa0259450:CDS
CTTCTTGCTTTGCACTTCCA+CGG 0.496175 2_2:-56492295 Msa0259450:three_prime_UTR
CATCATCGGTGATTGTTAAG+TGG 0.498493 2_2:+56493182 None:intergenic
TGTTATTTAAAATTGTCAAA+CGG 0.499007 2_2:+56493469 None:intergenic
GAATATTGTTAGCCCAAAGC+TGG 0.501276 2_2:-56492395 Msa0259450:three_prime_UTR
CGGATTGCCTCTAACAACTC+TGG 0.505539 2_2:+56493489 None:intergenic
CCATACCATCCTTGTTATGT+TGG 0.506105 2_2:+56495243 None:intergenic
CACCATCAAGCCTCTCCAGC+AGG 0.507273 2_2:-56492764 Msa0259450:intron
AAAGATCACCACCTTCTGTC+AGG 0.509139 2_2:+56493157 None:intergenic
GTGGAGACAGCTGATCGGCC+TGG 0.511021 2_2:-56493039 Msa0259450:CDS
CATAGAAGTGGTCTTCAAGA+TGG 0.513424 2_2:+56494875 None:intergenic
AATATTGGCAATGCATTTGG+AGG 0.514705 2_2:-56492427 Msa0259450:three_prime_UTR
CACTTAACAATCACCGATGA+TGG 0.515391 2_2:-56493181 Msa0259450:CDS
CCAACATAACAAGGATGGTA+TGG 0.517017 2_2:-56495243 Msa0259450:five_prime_UTR
AATTGTATTTGTTGATTGAG+TGG 0.528191 2_2:+56492364 None:intergenic
CATATCATCAAGATTAGAAG+TGG 0.537255 2_2:-56495153 Msa0259450:five_prime_UTR
ACAAGATCAACCAATAATCC+AGG 0.541856 2_2:+56493021 None:intergenic
TAGTGCTTACGCCTTTGTGA+TGG 0.543958 2_2:+56493632 None:intergenic
ATCATCGGTGATTGTTAAGT+GGG 0.544912 2_2:+56493183 None:intergenic
GGAGAACAGGATGGAAATCA+AGG 0.557287 2_2:-56494164 Msa0259450:intron
CAGTGATACAGGTAGAAAAG+TGG 0.558460 2_2:-56493517 Msa0259450:CDS
AGATAGCATGGAGATATATG+AGG 0.559451 2_2:+56495065 None:intergenic
CAAATGCATTGCCAATATTG+TGG 0.560302 2_2:+56492431 None:intergenic
TCAAGTGCCCAATTAGCTCT+AGG 0.563523 2_2:-56493332 Msa0259450:CDS
ACTTATGCCTCCAAAGGAGC+AGG 0.565012 2_2:-56493297 Msa0259450:intron
AAGTTTCATGTCAGCTACAA+TGG 0.567439 2_2:-56492793 Msa0259450:CDS
AAAGAATAATAAAGTGAGGA+GGG 0.572709 2_2:-56495287 None:intergenic
CAACCAATTACCTGCTGGAG+AGG 0.574118 2_2:+56492754 None:intergenic
AGCACCAAGGCGATCACCAA+AGG 0.576324 2_2:+56494064 None:intergenic
AAAAGAATAATAAAGTGAGG+AGG 0.576639 2_2:-56495288 None:intergenic
CCGATGATGGTCCTGACAGA+AGG 0.584356 2_2:-56493168 Msa0259450:intron
ACATGGCTTAGCAGATAGCA+TGG 0.585602 2_2:+56495053 None:intergenic
CCTATCCAACATAACAAGGA+TGG 0.592199 2_2:-56495248 Msa0259450:five_prime_UTR
ACTAGTATCATACATAGAAG+TGG 0.592687 2_2:+56494863 None:intergenic
CAGAAACAGCTGTTGCTCGA+GGG 0.594027 2_2:+56494280 None:intergenic
CCTTCTGTCAGGACCATCAT+CGG 0.595720 2_2:+56493168 None:intergenic
ATACCAATTTCAGCTTGATG+TGG 0.598739 2_2:-56493215 Msa0259450:intron
AATAAAAGAATAATAAAGTG+AGG 0.599286 2_2:-56495291 None:intergenic
TGCTCCTATCCAACATAACA+AGG 0.599487 2_2:-56495252 Msa0259450:five_prime_UTR
ATAAAATATGAATAAAGCCG+TGG 0.603487 2_2:+56492278 None:intergenic
TCAGAAACAGCTGTTGCTCG+AGG 0.604318 2_2:+56494279 None:intergenic
CTGCTGGAGAGGCTTGATGG+TGG 0.611190 2_2:+56492765 None:intergenic
TCGAGCAACAGCTGTTTCTG+AGG 0.612198 2_2:-56494277 Msa0259450:intron
CTTGACTCGTCCTACAACTG+AGG 0.628347 2_2:-56492521 Msa0259450:CDS
GTTCAATGAGACAGAAGACA+TGG 0.645717 2_2:+56495036 None:intergenic
AGAAGTGGTCTTCAAGATGG+AGG 0.666392 2_2:+56494878 None:intergenic
TAACATGATCACATATCACC+CGG 0.672020 2_2:-56493451 Msa0259450:intron
TGTATGTGGAGACAGCTGAT+CGG 0.701675 2_2:-56493044 Msa0259450:CDS
CGGTGTCAAGAAGAGCACCA+AGG 0.710369 2_2:+56494051 None:intergenic
ATCTGGTGAATTTGACACTG+AGG 0.742158 2_2:-56492965 Msa0259450:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAATATATATTCAACT+TGG - chr2_2:56493123-56493142 Msa0259450:intron 15.0%
!! GATTAATATATATTCAACTT+GGG - chr2_2:56493124-56493143 Msa0259450:intron 15.0%
!! ATAAACTTAAATCAAGAAAA+TGG - chr2_2:56493769-56493788 Msa0259450:intron 15.0%
!!! TGTTATTTAAAATTGTCAAA+CGG + chr2_2:56494058-56494077 None:intergenic 15.0%
!! ATACAATTAATTGTTACATT+TGG + chr2_2:56494616-56494635 None:intergenic 15.0%
!!! TTAATTTGTTGTAAAATGTA+GGG - chr2_2:56494692-56494711 Msa0259450:intron 15.0%
!! TTATTTAGACATACAAAAGT+CGG - chr2_2:56492900-56492919 Msa0259450:intron 20.0%
!! TTAGAAACTATTGTTGATAT+CGG - chr2_2:56493004-56493023 Msa0259450:CDS 20.0%
!!! TTAGGTATATACTTGTTAAT+TGG - chr2_2:56493052-56493071 Msa0259450:CDS 20.0%
!!! TAGGTATATACTTGTTAATT+GGG - chr2_2:56493053-56493072 Msa0259450:intron 20.0%
!! TACATACAATTAACACAAAA+TGG + chr2_2:56493185-56493204 None:intergenic 20.0%
!! TCTTGATCAATTATAACTAT+AGG + chr2_2:56493408-56493427 None:intergenic 20.0%
!!! AGAATCTGAAGTAATTTATT+TGG - chr2_2:56493961-56493980 Msa0259450:intron 20.0%
!!! CTTAATTTGTTGTAAAATGT+AGG - chr2_2:56494691-56494710 Msa0259450:intron 20.0%
!!! TAATTTGTTGTAAAATGTAG+GGG - chr2_2:56494693-56494712 Msa0259450:intron 20.0%
!!! TGTTAATTTGTTGAATGAAT+TGG - chr2_2:56494805-56494824 Msa0259450:intron 20.0%
!! TATAGAAGACTTAGTTTATT+AGG - chr2_2:56494842-56494861 Msa0259450:CDS 20.0%
!! TGATAACAACATGTAAATTA+AGG + chr2_2:56494886-56494905 None:intergenic 20.0%
!!! AAATGAAACTTGATTAGTTT+CGG - chr2_2:56494908-56494927 Msa0259450:CDS 20.0%
!! GAATATAATAACCACAATAT+TGG - chr2_2:56495082-56495101 Msa0259450:five_prime_UTR 20.0%
!! AAAAACTAGGTAAGTACTTT+TGG - chr2_2:56492704-56492723 Msa0259450:intron 25.0%
!! TTACTATTCAGTCTTTTTGT+TGG - chr2_2:56492853-56492872 Msa0259450:intron 25.0%
! TGGACTATATTTAGATATAG+AGG - chr2_2:56492873-56492892 Msa0259450:intron 25.0%
! AACACGTATAAAATACAACT+AGG - chr2_2:56492930-56492949 Msa0259450:intron 25.0%
! TACCTAACATAAATGTTTCT+CGG + chr2_2:56493039-56493058 None:intergenic 25.0%
! AAGATGATAATCTGAGAAAA+TGG + chr2_2:56493208-56493227 None:intergenic 25.0%
! CAATTATAACTATAGGTGTT+GGG + chr2_2:56493401-56493420 None:intergenic 25.0%
! TCAATTATAACTATAGGTGT+TGG + chr2_2:56493402-56493421 None:intergenic 25.0%
! ATTTCTCTCAACAAATCAAT+TGG - chr2_2:56493501-56493520 Msa0259450:CDS 25.0%
! ACAGTGATGTATAAAAAAGA+TGG + chr2_2:56493531-56493550 None:intergenic 25.0%
! ATGAATGCATTGAAAAACTT+GGG - chr2_2:56493810-56493829 Msa0259450:intron 25.0%
!! TATTGTACATGTTCGTTTTA+TGG - chr2_2:56493923-56493942 Msa0259450:intron 25.0%
!!! TGTTTTCAAACTGGTTTTAA+AGG - chr2_2:56494167-56494186 Msa0259450:intron 25.0%
!!! CAACACATTTTATTTGCTTT+GGG - chr2_2:56495060-56495079 Msa0259450:five_prime_UTR 25.0%
!! AATTGTATTTGTTGATTGAG+TGG + chr2_2:56495163-56495182 None:intergenic 25.0%
! ACTCAATCAACAAATACAAT+TGG - chr2_2:56495162-56495181 Msa0259450:five_prime_UTR 25.0%
! TGACTAGTAAGTTTACAATA+TGG + chr2_2:56495205-56495224 None:intergenic 25.0%
! ATAAAATATGAATAAAGCCG+TGG + chr2_2:56495249-56495268 None:intergenic 25.0%
TAATTAAAAAGTGACGCGTT+TGG + chr2_2:56492339-56492358 None:intergenic 30.0%
CATATCATCAAGATTAGAAG+TGG - chr2_2:56492371-56492390 Msa0259450:three_prime_UTR 30.0%
AAGAGTTGAAGGATTTGAAA+AGG + chr2_2:56492529-56492548 None:intergenic 30.0%
! TCCTTCAACTCTTTGAAAAA+TGG - chr2_2:56492536-56492555 Msa0259450:CDS 30.0%
TAATAACTTCTTCAGACCTT+TGG - chr2_2:56492605-56492624 Msa0259450:intron 30.0%
ACTAGTATCATACATAGAAG+TGG + chr2_2:56492664-56492683 None:intergenic 30.0%
CTTTCAGTCTTCAAAAAACT+AGG - chr2_2:56492691-56492710 Msa0259450:intron 30.0%
TAAGTAATGTGTCTATCACT+TGG - chr2_2:56492786-56492805 Msa0259450:CDS 30.0%
TTTGTTGAGAGAAATGCTTA+CGG + chr2_2:56493496-56493515 None:intergenic 30.0%
!! TAAGCATTGAATTGAAGTGT+CGG + chr2_2:56493560-56493579 None:intergenic 30.0%
!! TTTAAAAAAGCGTTGAGATG+TGG - chr2_2:56493740-56493759 Msa0259450:intron 30.0%
GATGAATGCATTGAAAAACT+TGG - chr2_2:56493809-56493828 Msa0259450:intron 30.0%
AACGAACATGTACAATACAA+GGG + chr2_2:56493920-56493939 None:intergenic 30.0%
AAACGAACATGTACAATACA+AGG + chr2_2:56493921-56493940 None:intergenic 30.0%
AATTTATTTGGAGATGTGTG+TGG - chr2_2:56493973-56493992 Msa0259450:intron 30.0%
AAATCATGCTACAAAGTAGT+AGG + chr2_2:56494119-56494138 None:intergenic 30.0%
! AGAGTTACATGTTTTCAAAC+TGG - chr2_2:56494158-56494177 Msa0259450:CDS 30.0%
! TAGCTAGAACATGTTACTTA+AGG + chr2_2:56494425-56494444 None:intergenic 30.0%
! CTAGCTACTAATTCTGTTTT+TGG - chr2_2:56494438-56494457 Msa0259450:intron 30.0%
! ATTAACATTGCTGTTGAATC+TGG - chr2_2:56494542-56494561 Msa0259450:intron 30.0%
!! GCAACACATTTTATTTGCTT+TGG - chr2_2:56495059-56495078 Msa0259450:five_prime_UTR 30.0%
AGATAGCATGGAGATATATG+AGG + chr2_2:56492462-56492481 None:intergenic 35.0%
!!! GCCATTTTTCAAAGAGTTGA+AGG + chr2_2:56492540-56492559 None:intergenic 35.0%
! AACTCTTTGAAAAATGGCTG+TGG - chr2_2:56492542-56492561 Msa0259450:CDS 35.0%
!! CTGCAAATGGATTTTTCCAA+AGG + chr2_2:56492624-56492643 None:intergenic 35.0%
! AACTAGGTAAGTACTTTTGG+TGG - chr2_2:56492707-56492726 Msa0259450:intron 35.0%
AAATACAACTAGGACGTGTT+TGG - chr2_2:56492940-56492959 Msa0259450:intron 35.0%
GTCCGAGAAACATTTATGTT+AGG - chr2_2:56493034-56493053 Msa0259450:CDS 35.0%
CAAAATGGACACTTCATTTG+AGG + chr2_2:56493170-56493189 None:intergenic 35.0%
CGAGAGTTAAAAGGAAATGT+TGG + chr2_2:56493337-56493356 None:intergenic 35.0%
!! ATTTCCTTTTAACTCTCGTG+TGG - chr2_2:56493339-56493358 Msa0259450:intron 35.0%
ATAGACTGAAACTGACACAT+TGG + chr2_2:56493591-56493610 None:intergenic 35.0%
! CAACAAGTTTTCCATCACAA+AGG - chr2_2:56493881-56493900 Msa0259450:intron 35.0%
AACTTTGATTGCAGTGATAC+AGG - chr2_2:56493996-56494015 Msa0259450:intron 35.0%
TAACATGATCACATATCACC+CGG - chr2_2:56494073-56494092 Msa0259450:CDS 35.0%
ATACCAATTTCAGCTTGATG+TGG - chr2_2:56494309-56494328 Msa0259450:CDS 35.0%
ATCATCGGTGATTGTTAAGT+GGG + chr2_2:56494344-56494363 None:intergenic 35.0%
ACAAGATCAACCAATAATCC+AGG + chr2_2:56494506-56494525 None:intergenic 35.0%
! CATTTGGAGCATGAATATCT+TGG + chr2_2:56494600-56494619 None:intergenic 35.0%
! TTGTAAAATGTAGGGGCTTT+TGG - chr2_2:56494700-56494719 Msa0259450:intron 35.0%
AAGTTTCATGTCAGCTACAA+TGG - chr2_2:56494731-56494750 Msa0259450:intron 35.0%
AAAATGCATGTGTACCTATC+TGG - chr2_2:56494951-56494970 Msa0259450:CDS 35.0%
ACAATTTGCCACTCAAAAAC+TGG + chr2_2:56495032-56495051 None:intergenic 35.0%
CAAATGCATTGCCAATATTG+TGG + chr2_2:56495096-56495115 None:intergenic 35.0%
CACAATATTGGCAATGCATT+TGG - chr2_2:56495094-56495113 Msa0259450:five_prime_UTR 35.0%
AATATTGGCAATGCATTTGG+AGG - chr2_2:56495097-56495116 Msa0259450:five_prime_UTR 35.0%
TGGATAGGAGCAGATAAAAC+TGG + chr2_2:56492264-56492283 None:intergenic 40.0%
TGCTCCTATCCAACATAACA+AGG - chr2_2:56492272-56492291 Msa0259450:three_prime_UTR 40.0%
! CCATCCTTGTTATGTTGGAT+AGG + chr2_2:56492279-56492298 None:intergenic 40.0%
CCTATCCAACATAACAAGGA+TGG - chr2_2:56492276-56492295 Msa0259450:three_prime_UTR 40.0%
! CCATACCATCCTTGTTATGT+TGG + chr2_2:56492284-56492303 None:intergenic 40.0%
CCAACATAACAAGGATGGTA+TGG - chr2_2:56492281-56492300 Msa0259450:three_prime_UTR 40.0%
TTAAAAAGTGACGCGTTTGG+TGG + chr2_2:56492336-56492355 None:intergenic 40.0%
GTTCAATGAGACAGAAGACA+TGG + chr2_2:56492491-56492510 None:intergenic 40.0%
TTGAAAAATGGCTGTGGCTA+TGG - chr2_2:56492548-56492567 Msa0259450:CDS 40.0%
CATAGAAGTGGTCTTCAAGA+TGG + chr2_2:56492652-56492671 None:intergenic 40.0%
GAATCAGCAACTTTAAGCAG+AGG + chr2_2:56492814-56492833 None:intergenic 40.0%
!! CTGCTTAAAGTTGCTGATTC+TGG - chr2_2:56492814-56492833 Msa0259450:CDS 40.0%
TTGTTAATTGGGCTGATCGA+AGG - chr2_2:56493064-56493083 Msa0259450:intron 40.0%
!! ACAGCTGTTTCTGAGGTATT+TGG - chr2_2:56493254-56493273 Msa0259450:intron 40.0%
TTCTCCACACGAGAGTTAAA+AGG + chr2_2:56493346-56493365 None:intergenic 40.0%
CTTGGGACTGAATGTTGTTA+AGG - chr2_2:56493827-56493846 Msa0259450:intron 40.0%
CAGTGATACAGGTAGAAAAG+TGG - chr2_2:56494007-56494026 Msa0259450:intron 40.0%
! TTTTGGACTTATGCCTCCAA+AGG - chr2_2:56494221-56494240 Msa0259450:intron 40.0%
TGTCCACATCAAGCTGAAAT+TGG + chr2_2:56494315-56494334 None:intergenic 40.0%
CATCATCGGTGATTGTTAAG+TGG + chr2_2:56494345-56494364 None:intergenic 40.0%
CACTTAACAATCACCGATGA+TGG - chr2_2:56494343-56494362 Msa0259450:intron 40.0%
ATCTGGTGAATTTGACACTG+AGG - chr2_2:56494559-56494578 Msa0259450:intron 40.0%
TTAACAAGAACCTGCCAGAT+AGG + chr2_2:56494968-56494987 None:intergenic 40.0%
AAACTGGATTCCTCAGTTGT+AGG + chr2_2:56495016-56495035 None:intergenic 40.0%
!! TGAGGAATCCAGTTTTTGAG+TGG - chr2_2:56495021-56495040 Msa0259450:five_prime_UTR 40.0%
GAATATTGTTAGCCCAAAGC+TGG - chr2_2:56495129-56495148 Msa0259450:five_prime_UTR 40.0%
ACATGGCTTAGCAGATAGCA+TGG + chr2_2:56492474-56492493 None:intergenic 45.0%
AGAAGTGGTCTTCAAGATGG+AGG + chr2_2:56492649-56492668 None:intergenic 45.0%
!! CGTGTTTGGTGTTAGAAACG+AGG - chr2_2:56492954-56492973 Msa0259450:intron 45.0%
TTAACTCTCGTGTGGAGAAC+AGG - chr2_2:56493347-56493366 Msa0259450:intron 45.0%
GGAGAACAGGATGGAAATCA+AGG - chr2_2:56493360-56493379 Msa0259450:intron 45.0%
ACTGTCGTCGAGATTACCTT+TGG - chr2_2:56493444-56493463 Msa0259450:intron 45.0%
! ATTACCTTTGGTGATCGCCT+TGG - chr2_2:56493456-56493475 Msa0259450:CDS 45.0%
TAGTGCTTACGCCTTTGTGA+TGG + chr2_2:56493895-56493914 None:intergenic 45.0%
GGAAGATCCAGAGTTGTTAG+AGG - chr2_2:56494028-56494047 Msa0259450:intron 45.0%
! AACTGAGAAGCATAGGTACC+GGG + chr2_2:56494094-56494113 None:intergenic 45.0%
! CAACTGAGAAGCATAGGTAC+CGG + chr2_2:56494095-56494114 None:intergenic 45.0%
! GTAGGACAACTGAGAAGCAT+AGG + chr2_2:56494101-56494120 None:intergenic 45.0%
! TCAAGTGCCCAATTAGCTCT+AGG - chr2_2:56494192-56494211 Msa0259450:intron 45.0%
AGCTGCTCCTAGAGCTAATT+GGG + chr2_2:56494202-56494221 None:intergenic 45.0%
AAGCTGCTCCTAGAGCTAAT+TGG + chr2_2:56494203-56494222 None:intergenic 45.0%
!!! TTAGCTCTAGGAGCAGCTTT+TGG - chr2_2:56494204-56494223 Msa0259450:intron 45.0%
GAATTCATCACCTGCTCCTT+TGG + chr2_2:56494240-56494259 None:intergenic 45.0%
AAAGATCACCACCTTCTGTC+AGG + chr2_2:56494370-56494389 None:intergenic 45.0%
TGTATGTGGAGACAGCTGAT+CGG - chr2_2:56494480-56494499 Msa0259450:intron 45.0%
!! AATGTAGGGGCTTTTGGCTA+AGG - chr2_2:56494706-56494725 Msa0259450:intron 45.0%
TGCATCAACCAATTACCTGC+TGG + chr2_2:56494778-56494797 None:intergenic 45.0%
GTGGAATGTACTCCAGCTTT+GGG + chr2_2:56495144-56495163 None:intergenic 45.0%
AGTGGAATGTACTCCAGCTT+TGG + chr2_2:56495145-56495164 None:intergenic 45.0%
CTTCTTGCTTTGCACTTCCA+CGG - chr2_2:56495229-56495248 Msa0259450:five_prime_UTR 45.0%
!! CAAGATGGAGGCACTGCAAA+TGG + chr2_2:56492637-56492656 None:intergenic 50.0%
CAACTTGGGAAGTGACTGCT+TGG - chr2_2:56493138-56493157 Msa0259450:intron 50.0%
CAGAAACAGCTGTTGCTCGA+GGG + chr2_2:56493247-56493266 None:intergenic 50.0%
TCAGAAACAGCTGTTGCTCG+AGG + chr2_2:56493248-56493267 None:intergenic 50.0%
!! TCGAGCAACAGCTGTTTCTG+AGG - chr2_2:56493247-56493266 Msa0259450:intron 50.0%
ATCTCGACGACAGTTGCATC+AGG + chr2_2:56493438-56493457 None:intergenic 50.0%
TGTTAAGGCAAGCGTGTGTC+TGG - chr2_2:56493842-56493861 Msa0259450:intron 50.0%
CGGATTGCCTCTAACAACTC+TGG + chr2_2:56494038-56494057 None:intergenic 50.0%
ACTTATGCCTCCAAAGGAGC+AGG - chr2_2:56494227-56494246 Msa0259450:intron 50.0%
TTCATCACCTGCTCCTTTGG+AGG + chr2_2:56494237-56494256 None:intergenic 50.0%
CCTTCTGTCAGGACCATCAT+CGG + chr2_2:56494359-56494378 None:intergenic 50.0%
ATGATGGTCCTGACAGAAGG+TGG - chr2_2:56494359-56494378 Msa0259450:intron 50.0%
!! GTGCTGCAGTTTGCTGTATG+TGG - chr2_2:56494466-56494485 Msa0259450:intron 50.0%
AGCTGATCGGCCTGGATTAT+TGG - chr2_2:56494493-56494512 Msa0259450:intron 50.0%
AAGCCTCTCCAGCAGGTAAT+TGG - chr2_2:56494767-56494786 Msa0259450:intron 50.0%
CAACCAATTACCTGCTGGAG+AGG + chr2_2:56494773-56494792 None:intergenic 50.0%
TGCATGTGTACCTATCTGGC+AGG - chr2_2:56494955-56494974 Msa0259450:CDS 50.0%
! CTTGACTCGTCCTACAACTG+AGG - chr2_2:56495003-56495022 Msa0259450:five_prime_UTR 50.0%
GCTATGGCTGCTTGCAGTCT+TGG - chr2_2:56492564-56492583 Msa0259450:intron 55.0%
CTCTCGTGTGGAGAACAGGA+TGG - chr2_2:56493351-56493370 Msa0259450:intron 55.0%
AGCACCAAGGCGATCACCAA+AGG + chr2_2:56493463-56493482 None:intergenic 55.0%
!! CGGTGTCAAGAAGAGCACCA+AGG + chr2_2:56493476-56493495 None:intergenic 55.0%
AGCGTGTGTCTGGACTCTTC+TGG - chr2_2:56493852-56493871 Msa0259450:intron 55.0%
! CCGATGATGGTCCTGACAGA+AGG - chr2_2:56494356-56494375 Msa0259450:intron 55.0%
TACCTGCTGGAGAGGCTTGA+TGG + chr2_2:56494765-56494784 None:intergenic 55.0%
CTGCTGGAGAGGCTTGATGG+TGG + chr2_2:56494762-56494781 None:intergenic 60.0%
CACCATCAAGCCTCTCCAGC+AGG - chr2_2:56494760-56494779 Msa0259450:intron 60.0%
GTGGAGACAGCTGATCGGCC+TGG - chr2_2:56494485-56494504 Msa0259450:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56492244 56495302 56492244 ID=Msa0259450;Name=Msa0259450
chr2_2 mRNA 56492244 56495302 56492244 ID=Msa0259450-mRNA-1;Parent=Msa0259450;Name=Msa0259450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=311|1|1|1|1|1|10|263|289
chr2_2 exon 56492244 56492569 56492244 ID=Msa0259450-mRNA-1:exon:17115;Parent=Msa0259450-mRNA-1
chr2_2 exon 56492765 56492833 56492765 ID=Msa0259450-mRNA-1:exon:17114;Parent=Msa0259450-mRNA-1
chr2_2 exon 56492966 56493071 56492966 ID=Msa0259450-mRNA-1:exon:17113;Parent=Msa0259450-mRNA-1
chr2_2 exon 56493169 56493224 56493169 ID=Msa0259450-mRNA-1:exon:17112;Parent=Msa0259450-mRNA-1
chr2_2 exon 56493298 56493357 56493298 ID=Msa0259450-mRNA-1:exon:17111;Parent=Msa0259450-mRNA-1
chr2_2 exon 56493452 56493536 56493452 ID=Msa0259450-mRNA-1:exon:17110;Parent=Msa0259450-mRNA-1
chr2_2 exon 56493642 56493736 56493642 ID=Msa0259450-mRNA-1:exon:17109;Parent=Msa0259450-mRNA-1
chr2_2 exon 56494052 56494177 56494052 ID=Msa0259450-mRNA-1:exon:17108;Parent=Msa0259450-mRNA-1
chr2_2 exon 56494278 56494329 56494278 ID=Msa0259450-mRNA-1:exon:17107;Parent=Msa0259450-mRNA-1
chr2_2 exon 56494834 56495302 56494834 ID=Msa0259450-mRNA-1:exon:17106;Parent=Msa0259450-mRNA-1
chr2_2 five_prime_UTR 56494992 56495302 56494992 ID=Msa0259450-mRNA-1:five_prime_utr;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56494834 56494991 56494834 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56494278 56494329 56494278 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56494052 56494177 56494052 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56493642 56493736 56493642 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56493452 56493536 56493452 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56493298 56493357 56493298 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56493169 56493224 56493169 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56492966 56493071 56492966 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56492765 56492833 56492765 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 CDS 56492507 56492569 56492507 ID=Msa0259450-mRNA-1:cds;Parent=Msa0259450-mRNA-1
chr2_2 three_prime_UTR 56492244 56492506 56492244 ID=Msa0259450-mRNA-1:three_prime_utr;Parent=Msa0259450-mRNA-1
Gene Sequence

>Msa0259450

ATGGCTGTGGCTATGGCTGCTTGCAGTCTTGGACTTCACTTGAGTTCTGATAATAACTTCTTCAGACCTTTGGAAAAATCCATTTGCAGTGCCTCCATCTTGAAGACCACTTCTATGTATGATACTAGTAAACTATCTTTCAGTCTTCAAAAAACTAGATTATCATCTTCAGCAATTACAATCATCCCTCGAGCAACAGCTGTTTCTGAGGATGGAAATCAAGGTGTTGCTGATACTGTCCCAACACCTATAGTTATAATTGATCAAGACTCTGATCCTGATGCAACTGTCGTCGAGATTACCTTTGGTGATCGCCTTGGTGCTCTTCTTGACACCATGAATGCATTGAAAAACTTGGGACTGAATGTTGTTAAGGCAAGCGTGTGTCTGGACTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAGGCTGATACAGGTAGAAAAGTGGAAGATCCAGAGTTGTTAGAGGCAATCCGTTTGACAATTTTAAATAACATGATCACATATCACCCGGAATCAAGTGCCCAATTAGCTCTAGGAGCAGCTTTTGGACTTATGCCTCCAAAGGAGCAGCTTGATGTGGACATAGCGACCCACTTAACAATCACCGATGATGGTCCTGACAGAAGTTTGCTGTATGTGGAGACAGCTGATCGGCCTGGATTATTGGTTGATCTTGTAAAGATTATTACTGACATTAACATTGCTGTTGAATCTGGTGAATTTGACACTGAGGGGCTTTTGGCTAAGGCAAAGTTTCATGTCAGCTACAATGGTAAAGCCACCATCAAGCCTCTCCAGCAGGTTCTTGTTAACAGCTTGAGATACTTCTTGACTCGTCCTACAACTGAGGAATCCAGTTTTTGA

Protein sequence

>Msa0259450

MAVAMAACSLGLHLSSDNNFFRPLEKSICSASILKTTSMYDTSKLSFSLQKTRLSSSAITIIPRATAVSEDGNQGVADTVPTPIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKASVCLDSSGKHNKFSITKADTGRKVEDPELLEAIRLTILNNMITYHPESSAQLALGAAFGLMPPKEQLDVDIATHLTITDDGPDRSLLYVETADRPGLLVDLVKIITDINIAVESGEFDTEGLLAKAKFHVSYNGKATIKPLQQVLVNSLRYFLTRPTTEESSF*