AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902380 MtrunA17_Chr5g0427221 88.000 100 9 2 1 97 1 100 1.66e-57 175
Msa0902380 MtrunA17_Chr4g0021141 56.757 74 32 0 41 114 18 91 1.25e-24 91.7
Msa0902380 MtrunA17_Chr2g0282761 45.570 79 35 4 45 120 4 77 1.72e-12 63.2
Msa0902380 MtrunA17_Chr2g0282741 50.000 54 26 1 45 97 4 57 2.50e-12 62.8
Msa0902380 MtrunA17_Chr3g0138471 51.852 54 25 1 45 97 4 57 4.91e-12 61.6
Msa0902380 MtrunA17_Chr4g0040501 48.148 54 27 1 45 97 4 57 2.81e-11 59.7
Msa0902380 MtrunA17_Chr7g0263971 47.458 59 30 1 40 97 364 422 4.99e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902380 AT5G16650.1 67.164 67 20 1 41 107 7 71 7.32e-24 90.1
Msa0902380 AT2G33735.1 63.014 73 24 2 33 105 11 80 8.58e-24 89.4
Msa0902380 AT2G33735.2 63.014 73 24 2 33 105 11 80 8.58e-24 89.4
Msa0902380 AT5G16650.2 67.164 67 20 1 41 107 7 71 1.57e-23 90.1
Msa0902380 AT5G25530.2 48.148 54 27 1 45 97 4 57 3.56e-11 59.7
Msa0902380 AT3G47940.1 49.091 55 26 1 45 97 4 58 6.11e-11 58.9

Find 52 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTTCATGTTGGTAAAT+TGG 0.150122 6_1:-100649900 None:intergenic
TCGGGAATTTGGTCGGGTTT+TGG 0.162317 6_1:-100648958 None:intergenic
AGGAATGTGGGTCGGGAATT+TGG 0.255023 6_1:-100648969 None:intergenic
TCCTGGTCTTTCTGTTTATC+CGG 0.282566 6_1:-100649307 None:intergenic
TCAGGATTATTACAAGATAT+TGG 0.303213 6_1:+100649121 Msa0902380:intron
TAATTACATTCGTCTTGCTT+TGG 0.373388 6_1:+100649181 Msa0902380:CDS
TTCTTCCCATTCCCACATCA+TGG 0.397478 6_1:-100648899 None:intergenic
TTACGAAATGATTAAGTTTG+CGG 0.403787 6_1:-100648823 None:intergenic
ACCGTGACGTGGCCGAATCC+TGG 0.424294 6_1:-100649324 None:intergenic
GAAGAAATCGAAGTTGAGAT+AGG 0.427186 6_1:-100648989 None:intergenic
AATGTGGGCCGTCCGATGAT+AGG 0.450092 6_1:+100649917 Msa0902380:CDS
CCTCAACCATGATGTGGGAA+TGG 0.450761 6_1:+100648893 Msa0902380:exon
CCTGGTCTTTCTGTTTATCC+GGG 0.450762 6_1:-100649306 None:intergenic
TTGAGATAGGAATGTGGGTC+GGG 0.467627 6_1:-100648976 None:intergenic
CTCAACCATGATGTGGGAAT+GGG 0.469046 6_1:+100648894 Msa0902380:exon
TTCCTGCATCTGTGCACCTC+GGG 0.470256 6_1:-100649953 None:intergenic
GCTGACTTAGTTGTGCATCT+TGG 0.471434 6_1:+100649841 Msa0902380:intron
TGCCCGAGGTGCACAGATGC+AGG 0.474185 6_1:+100649951 Msa0902380:CDS
TTATTACAAGATATTGGAAG+TGG 0.477411 6_1:+100649127 Msa0902380:CDS
AGATATAAATGAGGCCTACC+AGG 0.484166 6_1:+100649351 Msa0902380:CDS
CCATTCCCACATCATGGTTG+AGG 0.501927 6_1:-100648893 None:intergenic
ATGTGGGTCGGGAATTTGGT+CGG 0.514552 6_1:-100648965 None:intergenic
TGTGGGTCGGGAATTTGGTC+GGG 0.522025 6_1:-100648964 None:intergenic
TAAACAGAAAGACCAGGATT+CGG 0.523730 6_1:+100649312 Msa0902380:CDS
CTCTGCTCTCTCTAAACCCA+AGG 0.525481 6_1:+100649011 Msa0902380:CDS
ATGATTAAGTTTGCGGTGAG+TGG 0.533572 6_1:-100648816 None:intergenic
CAATTTACCAACATGAAATG+TGG 0.533896 6_1:+100649901 Msa0902380:CDS
CACTCTCCTCAACCATGATG+TGG 0.540761 6_1:+100648887 Msa0902380:exon
ATATAAATAAATACCCTGGT+AGG 0.557717 6_1:-100649365 None:intergenic
AGTCCAGCCCGTCCTATCAT+CGG 0.565375 6_1:-100649929 None:intergenic
GGACGGCCCACATTTCATGT+TGG 0.576611 6_1:-100649908 None:intergenic
AATTTACCAACATGAAATGT+GGG 0.577811 6_1:+100649902 Msa0902380:CDS
TGGGCCGTCCGATGATAGGA+CGG 0.579247 6_1:+100649921 Msa0902380:CDS
CGAAGTTGAGATAGGAATGT+GGG 0.588768 6_1:-100648981 None:intergenic
AGGACGGGCTGGACTGCCCG+AGG 0.591474 6_1:+100649937 Msa0902380:CDS
ACCAGGATTCGGCCACGTCA+CGG 0.591695 6_1:+100649323 Msa0902380:CDS
GTGAGTTGAAATCTGAGCAT+CGG 0.592333 6_1:-100649868 None:intergenic
GTTCCTGCATCTGTGCACCT+CGG 0.594924 6_1:-100649954 None:intergenic
ACTCTCCTCAACCATGATGT+GGG 0.607401 6_1:+100648888 Msa0902380:exon
GGGCCGTCCGATGATAGGAC+GGG 0.613415 6_1:+100649922 Msa0902380:CDS
TATATCTTGAAACCGTGACG+TGG 0.614774 6_1:-100649335 None:intergenic
TGAACGAGAATATGAGTGGT+CGG 0.621088 6_1:-100648866 None:intergenic
CGTCCGATGATAGGACGGGC+TGG 0.621786 6_1:+100649926 Msa0902380:CDS
CCCGGATAAACAGAAAGACC+AGG 0.622579 6_1:+100649306 Msa0902380:CDS
ACGGTTTCAAGATATAAATG+AGG 0.624622 6_1:+100649342 Msa0902380:CDS
GTTGAGATAGGAATGTGGGT+CGG 0.627338 6_1:-100648977 None:intergenic
GAATACACAGAAATGGCACC+CGG 0.630117 6_1:+100649288 Msa0902380:intron
TCGAAGTTGAGATAGGAATG+TGG 0.632051 6_1:-100648982 None:intergenic
CAGCCCGTCCTATCATCGGA+CGG 0.655879 6_1:-100649925 None:intergenic
GATATAAATGAGGCCTACCA+GGG 0.671787 6_1:+100649352 Msa0902380:CDS
AGTGGATTACGATGCAACTG+AGG 0.678193 6_1:+100649145 Msa0902380:CDS
AGAGTGAACGAGAATATGAG+TGG 0.686675 6_1:-100648870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAGTTTATGATTTGTTT+TGG + chr6_1:100649094-100649113 Msa0902380:intron 15.0%
!! TTTATACTATCTATTTAATC+TGG + chr6_1:100649622-100649641 Msa0902380:intron 15.0%
!!! TTCTAAAAGTAACTATAATT+AGG - chr6_1:100649714-100649733 None:intergenic 15.0%
!!! AATTAGTTTATGATTTGTTT+TGG + chr6_1:100649094-100649113 Msa0902380:intron 15.0%
!! TTTATACTATCTATTTAATC+TGG + chr6_1:100649622-100649641 Msa0902380:intron 15.0%
!!! TTCTAAAAGTAACTATAATT+AGG - chr6_1:100649714-100649733 None:intergenic 15.0%
!! CAATATATAAATAAATACCC+TGG - chr6_1:100649372-100649391 None:intergenic 20.0%
!! CAATATATAAATAAATACCC+TGG - chr6_1:100649372-100649391 None:intergenic 20.0%
! TTACGAAATGATTAAGTTTG+CGG - chr6_1:100648826-100648845 None:intergenic 25.0%
! GTAATAATTAAGATGAAGGA+GGG - chr6_1:100649052-100649071 None:intergenic 25.0%
! AGTAATAATTAAGATGAAGG+AGG - chr6_1:100649053-100649072 None:intergenic 25.0%
! ACGAGTAATAATTAAGATGA+AGG - chr6_1:100649056-100649075 None:intergenic 25.0%
!!! ATGATTTGTTTTGGTTTTTC+AGG + chr6_1:100649103-100649122 Msa0902380:intron 25.0%
! TCAGGATTATTACAAGATAT+TGG + chr6_1:100649121-100649140 Msa0902380:intron 25.0%
! TTATTACAAGATATTGGAAG+TGG + chr6_1:100649127-100649146 Msa0902380:CDS 25.0%
!! TTTCCTTTCTAATTTCGTTT+TGG + chr6_1:100649234-100649253 Msa0902380:intron 25.0%
!! TTCCTTTCTAATTTCGTTTT+GGG + chr6_1:100649235-100649254 Msa0902380:intron 25.0%
! TGTATTCAGATTAATAGCAA+AGG - chr6_1:100649275-100649294 None:intergenic 25.0%
! TTAATCTGAATACACAGAAA+TGG + chr6_1:100649281-100649300 Msa0902380:intron 25.0%
! ATATAAATAAATACCCTGGT+AGG - chr6_1:100649368-100649387 None:intergenic 25.0%
!! TAGAATTCTCTTTTGCATTA+TGG + chr6_1:100649729-100649748 Msa0902380:intron 25.0%
! ATGGTAAAAATTATCTTTGC+TGG + chr6_1:100649748-100649767 Msa0902380:intron 25.0%
! AATTTACCAACATGAAATGT+GGG + chr6_1:100649902-100649921 Msa0902380:CDS 25.0%
! TTACGAAATGATTAAGTTTG+CGG - chr6_1:100648826-100648845 None:intergenic 25.0%
! GTAATAATTAAGATGAAGGA+GGG - chr6_1:100649052-100649071 None:intergenic 25.0%
! AGTAATAATTAAGATGAAGG+AGG - chr6_1:100649053-100649072 None:intergenic 25.0%
! ACGAGTAATAATTAAGATGA+AGG - chr6_1:100649056-100649075 None:intergenic 25.0%
!!! ATGATTTGTTTTGGTTTTTC+AGG + chr6_1:100649103-100649122 Msa0902380:intron 25.0%
! TCAGGATTATTACAAGATAT+TGG + chr6_1:100649121-100649140 Msa0902380:intron 25.0%
! TTATTACAAGATATTGGAAG+TGG + chr6_1:100649127-100649146 Msa0902380:CDS 25.0%
!! TTTCCTTTCTAATTTCGTTT+TGG + chr6_1:100649234-100649253 Msa0902380:intron 25.0%
!! TTCCTTTCTAATTTCGTTTT+GGG + chr6_1:100649235-100649254 Msa0902380:intron 25.0%
! TGTATTCAGATTAATAGCAA+AGG - chr6_1:100649275-100649294 None:intergenic 25.0%
! TTAATCTGAATACACAGAAA+TGG + chr6_1:100649281-100649300 Msa0902380:intron 25.0%
! ATATAAATAAATACCCTGGT+AGG - chr6_1:100649368-100649387 None:intergenic 25.0%
!! TAGAATTCTCTTTTGCATTA+TGG + chr6_1:100649729-100649748 Msa0902380:intron 25.0%
! ATGGTAAAAATTATCTTTGC+TGG + chr6_1:100649748-100649767 Msa0902380:intron 25.0%
! AATTTACCAACATGAAATGT+GGG + chr6_1:100649902-100649921 Msa0902380:CDS 25.0%
TAATTACATTCGTCTTGCTT+TGG + chr6_1:100649181-100649200 Msa0902380:CDS 30.0%
ATCCCAAAACGAAATTAGAA+AGG - chr6_1:100649240-100649259 None:intergenic 30.0%
ACGGTTTCAAGATATAAATG+AGG + chr6_1:100649342-100649361 Msa0902380:CDS 30.0%
AAGTACATAACAATCTGTCA+AGG + chr6_1:100649524-100649543 Msa0902380:intron 30.0%
AGTACATAACAATCTGTCAA+GGG + chr6_1:100649525-100649544 Msa0902380:intron 30.0%
TGGAGAGAGAATGATAATTT+AGG + chr6_1:100649555-100649574 Msa0902380:intron 30.0%
GGAGAGAGAATGATAATTTA+GGG + chr6_1:100649556-100649575 Msa0902380:intron 30.0%
! TAATTTAGGGACTAAGTTGA+TGG + chr6_1:100649569-100649588 Msa0902380:intron 30.0%
ATATCCATATTGTGTTGTCA+AGG + chr6_1:100649667-100649686 Msa0902380:intron 30.0%
GGACAAATTTATACAGCAAA+AGG + chr6_1:100649688-100649707 Msa0902380:intron 30.0%
CATAGAGATTGTTATAGTCA+AGG - chr6_1:100649822-100649841 None:intergenic 30.0%
! CACATTTCATGTTGGTAAAT+TGG - chr6_1:100649903-100649922 None:intergenic 30.0%
CAATTTACCAACATGAAATG+TGG + chr6_1:100649901-100649920 Msa0902380:CDS 30.0%
TAATTACATTCGTCTTGCTT+TGG + chr6_1:100649181-100649200 Msa0902380:CDS 30.0%
ATCCCAAAACGAAATTAGAA+AGG - chr6_1:100649240-100649259 None:intergenic 30.0%
ACGGTTTCAAGATATAAATG+AGG + chr6_1:100649342-100649361 Msa0902380:CDS 30.0%
AAGTACATAACAATCTGTCA+AGG + chr6_1:100649524-100649543 Msa0902380:intron 30.0%
AGTACATAACAATCTGTCAA+GGG + chr6_1:100649525-100649544 Msa0902380:intron 30.0%
TGGAGAGAGAATGATAATTT+AGG + chr6_1:100649555-100649574 Msa0902380:intron 30.0%
GGAGAGAGAATGATAATTTA+GGG + chr6_1:100649556-100649575 Msa0902380:intron 30.0%
! TAATTTAGGGACTAAGTTGA+TGG + chr6_1:100649569-100649588 Msa0902380:intron 30.0%
ATATCCATATTGTGTTGTCA+AGG + chr6_1:100649667-100649686 Msa0902380:intron 30.0%
GGACAAATTTATACAGCAAA+AGG + chr6_1:100649688-100649707 Msa0902380:intron 30.0%
CATAGAGATTGTTATAGTCA+AGG - chr6_1:100649822-100649841 None:intergenic 30.0%
! CACATTTCATGTTGGTAAAT+TGG - chr6_1:100649903-100649922 None:intergenic 30.0%
CAATTTACCAACATGAAATG+TGG + chr6_1:100649901-100649920 Msa0902380:CDS 30.0%
GAAGAAATCGAAGTTGAGAT+AGG - chr6_1:100648992-100649011 None:intergenic 35.0%
TAAACAGAAAGACCAGGATT+CGG + chr6_1:100649312-100649331 Msa0902380:CDS 35.0%
ATATATTGTGCTCTGTTGCA+TGG + chr6_1:100649384-100649403 Msa0902380:intron 35.0%
AATCTGTCAAGGGACTAATT+TGG + chr6_1:100649535-100649554 Msa0902380:intron 35.0%
TTGTCCTTGACAACACAATA+TGG - chr6_1:100649674-100649693 None:intergenic 35.0%
TGCTGGAACTATTGTTTAGA+TGG + chr6_1:100649765-100649784 Msa0902380:intron 35.0%
GAAGAAATCGAAGTTGAGAT+AGG - chr6_1:100648992-100649011 None:intergenic 35.0%
TAAACAGAAAGACCAGGATT+CGG + chr6_1:100649312-100649331 Msa0902380:CDS 35.0%
ATATATTGTGCTCTGTTGCA+TGG + chr6_1:100649384-100649403 Msa0902380:intron 35.0%
AATCTGTCAAGGGACTAATT+TGG + chr6_1:100649535-100649554 Msa0902380:intron 35.0%
TTGTCCTTGACAACACAATA+TGG - chr6_1:100649674-100649693 None:intergenic 35.0%
TGCTGGAACTATTGTTTAGA+TGG + chr6_1:100649765-100649784 Msa0902380:intron 35.0%
ATGATTAAGTTTGCGGTGAG+TGG - chr6_1:100648819-100648838 None:intergenic 40.0%
TGAACGAGAATATGAGTGGT+CGG - chr6_1:100648869-100648888 None:intergenic 40.0%
AGAGTGAACGAGAATATGAG+TGG - chr6_1:100648873-100648892 None:intergenic 40.0%
CGAAGTTGAGATAGGAATGT+GGG - chr6_1:100648984-100649003 None:intergenic 40.0%
TCGAAGTTGAGATAGGAATG+TGG - chr6_1:100648985-100649004 None:intergenic 40.0%
ATTAAGATGAAGGAGGGTGA+GGG - chr6_1:100649046-100649065 None:intergenic 40.0%
AATTAAGATGAAGGAGGGTG+AGG - chr6_1:100649047-100649066 None:intergenic 40.0%
! TCCTGGTCTTTCTGTTTATC+CGG - chr6_1:100649310-100649329 None:intergenic 40.0%
TATATCTTGAAACCGTGACG+TGG - chr6_1:100649338-100649357 None:intergenic 40.0%
AGATATAAATGAGGCCTACC+AGG + chr6_1:100649351-100649370 Msa0902380:CDS 40.0%
GATATAAATGAGGCCTACCA+GGG + chr6_1:100649352-100649371 Msa0902380:CDS 40.0%
! GTGAGTTGAAATCTGAGCAT+CGG - chr6_1:100649871-100649890 None:intergenic 40.0%
ATGATTAAGTTTGCGGTGAG+TGG - chr6_1:100648819-100648838 None:intergenic 40.0%
TGAACGAGAATATGAGTGGT+CGG - chr6_1:100648869-100648888 None:intergenic 40.0%
AGAGTGAACGAGAATATGAG+TGG - chr6_1:100648873-100648892 None:intergenic 40.0%
CGAAGTTGAGATAGGAATGT+GGG - chr6_1:100648984-100649003 None:intergenic 40.0%
TCGAAGTTGAGATAGGAATG+TGG - chr6_1:100648985-100649004 None:intergenic 40.0%
ATTAAGATGAAGGAGGGTGA+GGG - chr6_1:100649046-100649065 None:intergenic 40.0%
AATTAAGATGAAGGAGGGTG+AGG - chr6_1:100649047-100649066 None:intergenic 40.0%
! TCCTGGTCTTTCTGTTTATC+CGG - chr6_1:100649310-100649329 None:intergenic 40.0%
TATATCTTGAAACCGTGACG+TGG - chr6_1:100649338-100649357 None:intergenic 40.0%
AGATATAAATGAGGCCTACC+AGG + chr6_1:100649351-100649370 Msa0902380:CDS 40.0%
GATATAAATGAGGCCTACCA+GGG + chr6_1:100649352-100649371 Msa0902380:CDS 40.0%
! GTGAGTTGAAATCTGAGCAT+CGG - chr6_1:100649871-100649890 None:intergenic 40.0%
ACTCTCCTCAACCATGATGT+GGG + chr6_1:100648888-100648907 Msa0902380:exon 45.0%
CTCAACCATGATGTGGGAAT+GGG + chr6_1:100648894-100648913 Msa0902380:exon 45.0%
TTCTTCCCATTCCCACATCA+TGG - chr6_1:100648902-100648921 None:intergenic 45.0%
TTGAGATAGGAATGTGGGTC+GGG - chr6_1:100648979-100648998 None:intergenic 45.0%
GTTGAGATAGGAATGTGGGT+CGG - chr6_1:100648980-100648999 None:intergenic 45.0%
!! AGTGGATTACGATGCAACTG+AGG + chr6_1:100649145-100649164 Msa0902380:CDS 45.0%
GAATACACAGAAATGGCACC+CGG + chr6_1:100649288-100649307 Msa0902380:intron 45.0%
! CCTGGTCTTTCTGTTTATCC+GGG - chr6_1:100649309-100649328 None:intergenic 45.0%
! GCTGACTTAGTTGTGCATCT+TGG + chr6_1:100649841-100649860 Msa0902380:intron 45.0%
TGCACAGATGCAGGAACTTT+AGG + chr6_1:100649960-100649979 Msa0902380:CDS 45.0%
ACTCTCCTCAACCATGATGT+GGG + chr6_1:100648888-100648907 Msa0902380:exon 45.0%
CTCAACCATGATGTGGGAAT+GGG + chr6_1:100648894-100648913 Msa0902380:exon 45.0%
TTCTTCCCATTCCCACATCA+TGG - chr6_1:100648902-100648921 None:intergenic 45.0%
TTGAGATAGGAATGTGGGTC+GGG - chr6_1:100648979-100648998 None:intergenic 45.0%
GTTGAGATAGGAATGTGGGT+CGG - chr6_1:100648980-100648999 None:intergenic 45.0%
!! AGTGGATTACGATGCAACTG+AGG + chr6_1:100649145-100649164 Msa0902380:CDS 45.0%
GAATACACAGAAATGGCACC+CGG + chr6_1:100649288-100649307 Msa0902380:intron 45.0%
! CCTGGTCTTTCTGTTTATCC+GGG - chr6_1:100649309-100649328 None:intergenic 45.0%
! GCTGACTTAGTTGTGCATCT+TGG + chr6_1:100649841-100649860 Msa0902380:intron 45.0%
CACTCTCCTCAACCATGATG+TGG + chr6_1:100648887-100648906 Msa0902380:exon 50.0%
CCATTCCCACATCATGGTTG+AGG - chr6_1:100648896-100648915 None:intergenic 50.0%
CCTCAACCATGATGTGGGAA+TGG + chr6_1:100648893-100648912 Msa0902380:exon 50.0%
!!! AATTTGGTCGGGTTTTGGGG+AGG - chr6_1:100648956-100648975 None:intergenic 50.0%
! GGGAATTTGGTCGGGTTTTG+GGG - chr6_1:100648959-100648978 None:intergenic 50.0%
! CGGGAATTTGGTCGGGTTTT+GGG - chr6_1:100648960-100648979 None:intergenic 50.0%
! TCGGGAATTTGGTCGGGTTT+TGG - chr6_1:100648961-100648980 None:intergenic 50.0%
ATGTGGGTCGGGAATTTGGT+CGG - chr6_1:100648968-100648987 None:intergenic 50.0%
AGGAATGTGGGTCGGGAATT+TGG - chr6_1:100648972-100648991 None:intergenic 50.0%
CTCTGCTCTCTCTAAACCCA+AGG + chr6_1:100649011-100649030 Msa0902380:CDS 50.0%
!!! GTGAGGGTTTTGGGAACCTT+GGG - chr6_1:100649030-100649049 None:intergenic 50.0%
! TGAAGGAGGGTGAGGGTTTT+GGG - chr6_1:100649039-100649058 None:intergenic 50.0%
! ATGAAGGAGGGTGAGGGTTT+TGG - chr6_1:100649040-100649059 None:intergenic 50.0%
CCCGGATAAACAGAAAGACC+AGG + chr6_1:100649306-100649325 Msa0902380:CDS 50.0%
CACTCTCCTCAACCATGATG+TGG + chr6_1:100648887-100648906 Msa0902380:exon 50.0%
CCATTCCCACATCATGGTTG+AGG - chr6_1:100648896-100648915 None:intergenic 50.0%
CCTCAACCATGATGTGGGAA+TGG + chr6_1:100648893-100648912 Msa0902380:exon 50.0%
!!! AATTTGGTCGGGTTTTGGGG+AGG - chr6_1:100648956-100648975 None:intergenic 50.0%
! GGGAATTTGGTCGGGTTTTG+GGG - chr6_1:100648959-100648978 None:intergenic 50.0%
! CGGGAATTTGGTCGGGTTTT+GGG - chr6_1:100648960-100648979 None:intergenic 50.0%
! TCGGGAATTTGGTCGGGTTT+TGG - chr6_1:100648961-100648980 None:intergenic 50.0%
ATGTGGGTCGGGAATTTGGT+CGG - chr6_1:100648968-100648987 None:intergenic 50.0%
AGGAATGTGGGTCGGGAATT+TGG - chr6_1:100648972-100648991 None:intergenic 50.0%
CTCTGCTCTCTCTAAACCCA+AGG + chr6_1:100649011-100649030 Msa0902380:CDS 50.0%
!!! GTGAGGGTTTTGGGAACCTT+GGG - chr6_1:100649030-100649049 None:intergenic 50.0%
! TGAAGGAGGGTGAGGGTTTT+GGG - chr6_1:100649039-100649058 None:intergenic 50.0%
! ATGAAGGAGGGTGAGGGTTT+TGG - chr6_1:100649040-100649059 None:intergenic 50.0%
CCCGGATAAACAGAAAGACC+AGG + chr6_1:100649306-100649325 Msa0902380:CDS 50.0%
TGTGGGTCGGGAATTTGGTC+GGG - chr6_1:100648967-100648986 None:intergenic 55.0%
!!! GGTGAGGGTTTTGGGAACCT+TGG - chr6_1:100649031-100649050 None:intergenic 55.0%
GGACGGCCCACATTTCATGT+TGG - chr6_1:100649911-100649930 None:intergenic 55.0%
AATGTGGGCCGTCCGATGAT+AGG + chr6_1:100649917-100649936 Msa0902380:CDS 55.0%
AGTCCAGCCCGTCCTATCAT+CGG - chr6_1:100649932-100649951 None:intergenic 55.0%
TTCCTGCATCTGTGCACCTC+GGG - chr6_1:100649956-100649975 None:intergenic 55.0%
GTTCCTGCATCTGTGCACCT+CGG - chr6_1:100649957-100649976 None:intergenic 55.0%
TGTGGGTCGGGAATTTGGTC+GGG - chr6_1:100648967-100648986 None:intergenic 55.0%
!!! GGTGAGGGTTTTGGGAACCT+TGG - chr6_1:100649031-100649050 None:intergenic 55.0%
GGACGGCCCACATTTCATGT+TGG - chr6_1:100649911-100649930 None:intergenic 55.0%
AATGTGGGCCGTCCGATGAT+AGG + chr6_1:100649917-100649936 Msa0902380:CDS 55.0%
AGTCCAGCCCGTCCTATCAT+CGG - chr6_1:100649932-100649951 None:intergenic 55.0%
TTCCTGCATCTGTGCACCTC+GGG - chr6_1:100649956-100649975 None:intergenic 55.0%
GTTCCTGCATCTGTGCACCT+CGG - chr6_1:100649957-100649976 None:intergenic 55.0%
ACCAGGATTCGGCCACGTCA+CGG + chr6_1:100649323-100649342 Msa0902380:CDS 60.0%
TGGGCCGTCCGATGATAGGA+CGG + chr6_1:100649921-100649940 Msa0902380:CDS 60.0%
CAGCCCGTCCTATCATCGGA+CGG - chr6_1:100649928-100649947 None:intergenic 60.0%
ACCAGGATTCGGCCACGTCA+CGG + chr6_1:100649323-100649342 Msa0902380:CDS 60.0%
TGGGCCGTCCGATGATAGGA+CGG + chr6_1:100649921-100649940 Msa0902380:CDS 60.0%
CAGCCCGTCCTATCATCGGA+CGG - chr6_1:100649928-100649947 None:intergenic 60.0%
ACCGTGACGTGGCCGAATCC+TGG - chr6_1:100649327-100649346 None:intergenic 65.0%
GGGCCGTCCGATGATAGGAC+GGG + chr6_1:100649922-100649941 Msa0902380:CDS 65.0%
CGTCCGATGATAGGACGGGC+TGG + chr6_1:100649926-100649945 Msa0902380:CDS 65.0%
TGCCCGAGGTGCACAGATGC+AGG + chr6_1:100649951-100649970 Msa0902380:CDS 65.0%
ACCGTGACGTGGCCGAATCC+TGG - chr6_1:100649327-100649346 None:intergenic 65.0%
GGGCCGTCCGATGATAGGAC+GGG + chr6_1:100649922-100649941 Msa0902380:CDS 65.0%
CGTCCGATGATAGGACGGGC+TGG + chr6_1:100649926-100649945 Msa0902380:CDS 65.0%
TGCCCGAGGTGCACAGATGC+AGG + chr6_1:100649951-100649970 Msa0902380:CDS 65.0%
!! AGGACGGGCTGGACTGCCCG+AGG + chr6_1:100649937-100649956 Msa0902380:CDS 75.0%
!! AGGACGGGCTGGACTGCCCG+AGG + chr6_1:100649937-100649956 Msa0902380:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 100648809 100649981 100648809 ID=Msa0902380;Name=Msa0902380
chr6_1 mRNA 100648809 100649981 100648809 ID=Msa0902380-mRNA-1;Parent=Msa0902380;Name=Msa0902380-mRNA-1;_AED=0.41;_eAED=0.41;_QI=92|0.66|0.75|1|1|1|4|0|138
chr6_1 exon 100648809 100649032 100648809 ID=Msa0902380-mRNA-1:exon:17790;Parent=Msa0902380-mRNA-1
chr6_1 exon 100649125 100649202 100649125 ID=Msa0902380-mRNA-1:exon:17791;Parent=Msa0902380-mRNA-1
chr6_1 exon 100649298 100649373 100649298 ID=Msa0902380-mRNA-1:exon:17792;Parent=Msa0902380-mRNA-1
chr6_1 exon 100649851 100649981 100649851 ID=Msa0902380-mRNA-1:exon:17793;Parent=Msa0902380-mRNA-1
chr6_1 five_prime_UTR 100648809 100648900 100648809 ID=Msa0902380-mRNA-1:five_prime_utr;Parent=Msa0902380-mRNA-1
chr6_1 CDS 100648901 100649032 100648901 ID=Msa0902380-mRNA-1:cds;Parent=Msa0902380-mRNA-1
chr6_1 CDS 100649125 100649202 100649125 ID=Msa0902380-mRNA-1:cds;Parent=Msa0902380-mRNA-1
chr6_1 CDS 100649298 100649373 100649298 ID=Msa0902380-mRNA-1:cds;Parent=Msa0902380-mRNA-1
chr6_1 CDS 100649851 100649981 100649851 ID=Msa0902380-mRNA-1:cds;Parent=Msa0902380-mRNA-1
Gene Sequence

>Msa0902380

ATGATGTGGGAATGGGAAGAAGAAGAACAACAACAACAATTTCACGACAACACCTCCCCAAAACCCGACCAAATTCCCGACCCACATTCCTATCTCAACTTCGATTTCTTCTCTGCTCTCTCTAAACCCAAGGATTATTACAAGATATTGGAAGTGGATTACGATGCAACTGAGGATACTATTCGTTCTAATTACATTCGTCTTGCTTTGAAATGGCACCCGGATAAACAGAAAGACCAGGATTCGGCCACGTCACGGTTTCAAGATATAAATGAGGCCTACCAGGTTGTGCATCTTGGTCATCCGATGCTCAGATTTCAACTCACTATTTTTTGCCAATTTACCAACATGAAATGTGGGCCGTCCGATGATAGGACGGGCTGGACTGCCCGAGGTGCACAGATGCAGGAACTTTAG

Protein sequence

>Msa0902380

MMWEWEEEEQQQQFHDNTSPKPDQIPDPHSYLNFDFFSALSKPKDYYKILEVDYDATEDTIRSNYIRLALKWHPDKQKDQDSATSRFQDINEAYQVVHLGHPMLRFQLTIFCQFTNMKCGPSDDRTGWTARGAQMQEL*