AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968060 MtrunA17_Chr2g0333871 97.241 290 7 1 1 289 1 290 0.0 566
Msa0968060 MtrunA17_Chr4g0001421 76.109 293 66 2 1 289 1 293 2.87e-157 440
Msa0968060 MtrunA17_Chr1g0210741 62.264 212 80 0 78 289 69 280 1.33e-97 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968060 AT1G16880.1 71.053 266 71 3 29 289 26 290 2.66e-133 379
Msa0968060 AT5G04740.1 62.736 212 79 0 78 289 90 301 3.03e-99 293
Msa0968060 AT1G16880.2 65.476 168 52 3 29 191 26 192 4.19e-69 213
Msa0968060 AT5G04740.2 59.664 119 48 0 171 289 82 200 2.04e-48 160
Msa0968060 AT3G01990.3 24.348 230 142 4 54 276 1 205 3.43e-13 69.3
Msa0968060 AT3G01990.2 24.348 230 142 4 54 276 1 205 4.08e-13 68.9
Msa0968060 AT3G01990.4 24.348 230 142 4 54 276 1 205 4.12e-13 69.3
Msa0968060 AT3G01990.7 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0968060 AT3G01990.5 24.348 230 142 4 54 276 1 205 5.46e-13 69.3
Msa0968060 AT3G01990.6 24.348 230 142 4 54 276 1 205 5.50e-13 69.3
Msa0968060 AT3G01990.8 25.373 201 118 4 83 276 16 191 7.82e-13 68.2
Msa0968060 AT3G01990.9 25.373 201 118 4 83 276 16 191 1.10e-12 67.8
Msa0968060 AT3G01990.11 25.373 201 118 4 83 276 16 191 1.20e-12 68.2
Msa0968060 AT3G01990.10 25.373 201 118 4 83 276 16 191 1.22e-12 68.2
Msa0968060 AT3G01990.1 25.373 201 118 4 83 276 16 191 1.22e-12 68.2

Find 74 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGATCGGCCTGGATTAT+TGG 0.254008 6_3:-98192617 Msa0968060:CDS
CACAATATTGGCAATGCATT+TGG 0.274897 6_3:-98192016 Msa0968060:three_prime_UTR
TTGTAAAATGTAGGGGCTTT+TGG 0.296400 6_3:-98192410 Msa0968060:intron
AAGCTGCTCCTAGAGCTAAT+TGG 0.307671 6_3:+98192910 None:intergenic
TTAGCTCTAGGAGCAGCTTT+TGG 0.320063 6_3:-98192906 Msa0968060:CDS
TGACTAGTAAATTTACAATA+TGG 0.326894 6_3:+98191908 None:intergenic
GAATTCATCACCTGCTCCTT+TGG 0.338089 6_3:+98192873 None:intergenic
GCTATGGCTGCTTGCAGTCT+TGG 0.340320 6_3:-98194555 Msa0968060:CDS
TAATAACTTCTTCAGACCTT+TGG 0.343676 6_3:-98194514 Msa0968060:CDS
GAATATAATAACCACAATAT+TGG 0.357966 6_3:-98192028 Msa0968060:three_prime_UTR
AAGAGTTGAAGGATTTGAAA+AGG 0.370883 6_3:+98194593 None:intergenic
ATTAACATTGCTGTTGAATC+TGG 0.377217 6_3:-98192568 Msa0968060:CDS
AACTTTGATTGCAGTGATAC+AGG 0.390474 6_3:-98193114 Msa0968060:intron
CTTGGGACTGAATGTTGTTA+AGG 0.403190 6_3:-98193283 Msa0968060:CDS
TACCTGCTGGAGAGGCTTGA+TGG 0.411055 6_3:+98192348 None:intergenic
AGTGGAATGTACTCCAGCTT+TGG 0.411870 6_3:+98191968 None:intergenic
AGCTGCTCCTAGAGCTAATT+GGG 0.415623 6_3:+98192911 None:intergenic
ACTCAATCAACAAATACAAT+TGG 0.416063 6_3:-98191948 Msa0968060:three_prime_UTR
TCTTGATCAATTATAACTAT+AGG 0.425614 6_3:+98193713 None:intergenic
TGTTAAGGCAAGCGTGTGTC+TGG 0.436304 6_3:-98193268 Msa0968060:CDS
GTGCTGCAGTTTGCTGTATG+TGG 0.438056 6_3:-98192644 Msa0968060:intron
GTGGAATGTACTCCAGCTTT+GGG 0.438611 6_3:+98191969 None:intergenic
AGCGTGTGTCTGGACTCTTC+TGG 0.440301 6_3:-98193258 Msa0968060:CDS
CAAGATGGAGGCACTGCAAA+TGG 0.440972 6_3:+98194485 None:intergenic
AAACTGGATTCCTCAGTTGT+AGG 0.450441 6_3:+98192097 None:intergenic
TCAATTATAACTATAGGTGT+TGG 0.463115 6_3:+98193719 None:intergenic
GGAAGATCCAGAGTTGTTAG+AGG 0.470609 6_3:-98193082 Msa0968060:CDS
TTCATCACCTGCTCCTTTGG+AGG 0.471072 6_3:+98192876 None:intergenic
ATCTCGACGACAGTTGCATC+AGG 0.471096 6_3:+98193683 None:intergenic
ACTGTCGTCGAGATTACCTT+TGG 0.487221 6_3:-98193674 Msa0968060:CDS
CAATTATAACTATAGGTGTT+GGG 0.488838 6_3:+98193720 None:intergenic
ATTACCTTTGGTGATCGCCT+TGG 0.489910 6_3:-98193662 Msa0968060:CDS
CTTCTTGCTTTGCACTTCCA+CGG 0.496175 6_3:-98191881 Msa0968060:three_prime_UTR
CATCATCGGTGATTGTTAAG+TGG 0.498493 6_3:+98192768 None:intergenic
TGTTATTTAAAATTGTCAAA+CGG 0.499007 6_3:+98193055 None:intergenic
GAATATTGTTAGCCCAAAGC+TGG 0.501276 6_3:-98191981 Msa0968060:three_prime_UTR
CGGATTGCCTCTAACAACTC+TGG 0.505539 6_3:+98193075 None:intergenic
CACCATCAAGCCTCTCCAGC+AGG 0.507273 6_3:-98192350 Msa0968060:intron
AAAGATCACCACCTTCTGTC+AGG 0.509139 6_3:+98192743 None:intergenic
GTGGAGACAGCTGATCGGCC+TGG 0.511021 6_3:-98192625 Msa0968060:CDS
CATAGAAGTGGTCTTCAAGA+TGG 0.513424 6_3:+98194470 None:intergenic
AATATTGGCAATGCATTTGG+AGG 0.514705 6_3:-98192013 Msa0968060:three_prime_UTR
CACTTAACAATCACCGATGA+TGG 0.515391 6_3:-98192767 Msa0968060:CDS
AATTGTATTTGTTGATTGAG+TGG 0.528191 6_3:+98191950 None:intergenic
CATATCATCAAGATTAGAAG+TGG 0.537255 6_3:-98194748 Msa0968060:five_prime_UTR
ACAAGATCAACCAATAATCC+AGG 0.541856 6_3:+98192607 None:intergenic
TAGTGCTTACGCCTTTGTGA+TGG 0.543958 6_3:+98193218 None:intergenic
ATCATCGGTGATTGTTAAGT+GGG 0.544912 6_3:+98192769 None:intergenic
GGAGAACAGGATGGAAATCA+AGG 0.557287 6_3:-98193758 Msa0968060:intron
CAGTGATACAGGTAGAAAAG+TGG 0.558460 6_3:-98193103 Msa0968060:CDS
AGATAGCATGGAGATATATG+AGG 0.559451 6_3:+98194660 None:intergenic
CAAATGCATTGCCAATATTG+TGG 0.560302 6_3:+98192017 None:intergenic
TCAAGTGCCCAATTAGCTCT+AGG 0.563523 6_3:-98192918 Msa0968060:CDS
ACTTATGCCTCCAAAGGAGC+AGG 0.565012 6_3:-98192883 Msa0968060:intron
AAGTTTCATGTCAGCTACAA+TGG 0.567439 6_3:-98192379 Msa0968060:CDS
CAACCAATTACCTGCTGGAG+AGG 0.574118 6_3:+98192340 None:intergenic
AGCACCAAGGCGATCACCAA+AGG 0.576324 6_3:+98193658 None:intergenic
CCGATGATGGTCCTGACAGA+AGG 0.584356 6_3:-98192754 Msa0968060:intron
ACATGGCTTAGCAGATAGCA+TGG 0.585602 6_3:+98194648 None:intergenic
ACTAGTATCATACATAGAAG+TGG 0.592687 6_3:+98194458 None:intergenic
CAGAAACAGCTGTTGCTCGA+GGG 0.594027 6_3:+98193874 None:intergenic
CCTTCTGTCAGGACCATCAT+CGG 0.595720 6_3:+98192754 None:intergenic
ATACCAATTTCAGCTTGATG+TGG 0.598739 6_3:-98192801 Msa0968060:intron
ATAAAATATGAATAAAGCCG+TGG 0.603487 6_3:+98191864 None:intergenic
TCAGAAACAGCTGTTGCTCG+AGG 0.604318 6_3:+98193873 None:intergenic
CTGCTGGAGAGGCTTGATGG+TGG 0.611190 6_3:+98192351 None:intergenic
TCGAGCAACAGCTGTTTCTG+AGG 0.612198 6_3:-98193871 Msa0968060:intron
CTTGACTCGTCCTACAACTG+AGG 0.628347 6_3:-98192107 Msa0968060:CDS
GTTCAATGAGACAGAAGACA+TGG 0.645717 6_3:+98194631 None:intergenic
AGAAGTGGTCTTCAAGATGG+AGG 0.666392 6_3:+98194473 None:intergenic
TAACATGATCACATATCACC+CGG 0.672020 6_3:-98193037 Msa0968060:intron
TGTATGTGGAGACAGCTGAT+CGG 0.701675 6_3:-98192630 Msa0968060:CDS
CGGTGTCAAGAAGAGCACCA+AGG 0.710369 6_3:+98193645 None:intergenic
ATCTGGTGAATTTGACACTG+AGG 0.742158 6_3:-98192551 Msa0968060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAATATATATTCAACT+TGG - chr6_3:98192632-98192651 Msa0968060:CDS 15.0%
!! GATTAATATATATTCAACTT+GGG - chr6_3:98192633-98192652 Msa0968060:CDS 15.0%
!! ATAAACTTAAATCAAGAAAA+TGG - chr6_3:98193286-98193305 Msa0968060:CDS 15.0%
!!! TGTTATTTAAAATTGTCAAA+CGG + chr6_3:98193575-98193594 None:intergenic 15.0%
!! ATACAATTAATTGTTACATT+TGG + chr6_3:98194133-98194152 None:intergenic 15.0%
!!! TTAATTTGTTGTAAAATGTA+GGG - chr6_3:98194209-98194228 Msa0968060:intron 15.0%
!! TTATTTAGACATACAAAAGT+CGG - chr6_3:98192408-98192427 Msa0968060:intron 20.0%
!! TTAGAAACTATTGTTGATAT+CGG - chr6_3:98192513-98192532 Msa0968060:intron 20.0%
!! TACATACAATTAACACAAAA+TGG + chr6_3:98192694-98192713 None:intergenic 20.0%
!! TCTTGATCAATTATAACTAT+AGG + chr6_3:98192917-98192936 None:intergenic 20.0%
!!! AGAATCTGAAGTAATTTATT+TGG - chr6_3:98193478-98193497 Msa0968060:intron 20.0%
!!! CTTAATTTGTTGTAAAATGT+AGG - chr6_3:98194208-98194227 Msa0968060:intron 20.0%
!!! TAATTTGTTGTAAAATGTAG+GGG - chr6_3:98194210-98194229 Msa0968060:intron 20.0%
!!! TGTTAATTTGTTGAATGAAT+TGG - chr6_3:98194322-98194341 Msa0968060:intron 20.0%
!! TATAGAAGACTTAGTTTATT+AGG - chr6_3:98194359-98194378 Msa0968060:intron 20.0%
!! TGATAACAACATGTAAATTA+AGG + chr6_3:98194403-98194422 None:intergenic 20.0%
!!! AAATGAAACTTGATTAGTTT+CGG - chr6_3:98194425-98194444 Msa0968060:intron 20.0%
!! GAATATAATAACCACAATAT+TGG - chr6_3:98194599-98194618 Msa0968060:five_prime_UTR 20.0%
!! TGACTAGTAAATTTACAATA+TGG + chr6_3:98194722-98194741 None:intergenic 20.0%
!! AAAAACTAGGTAAGTACTTT+TGG - chr6_3:98192212-98192231 Msa0968060:intron 25.0%
!! TTACTATTCAGTCTTTTTGT+TGG - chr6_3:98192361-98192380 Msa0968060:CDS 25.0%
! TGGACTATATTTAGATATAG+AGG - chr6_3:98192381-98192400 Msa0968060:CDS 25.0%
! AACACGTATAAAATACAACT+AGG - chr6_3:98192438-98192457 Msa0968060:intron 25.0%
!! TTAGGTGTATACTTGTTAAT+TGG - chr6_3:98192561-98192580 Msa0968060:CDS 25.0%
!! TAGGTGTATACTTGTTAATT+GGG - chr6_3:98192562-98192581 Msa0968060:CDS 25.0%
! AAGATGATAATCTGAGAAAA+TGG + chr6_3:98192717-98192736 None:intergenic 25.0%
! CAATTATAACTATAGGTGTT+GGG + chr6_3:98192910-98192929 None:intergenic 25.0%
! TCAATTATAACTATAGGTGT+TGG + chr6_3:98192911-98192930 None:intergenic 25.0%
! ATTTCTCTCAACAAATCAAT+TGG - chr6_3:98193010-98193029 Msa0968060:intron 25.0%
! ACAGTGATGTATAAAAAAGA+TGG + chr6_3:98193040-98193059 None:intergenic 25.0%
! ATGAATGCATTGAAAAACTT+GGG - chr6_3:98193327-98193346 Msa0968060:intron 25.0%
!! TATTGTACATGTTCGTTTTA+TGG - chr6_3:98193440-98193459 Msa0968060:intron 25.0%
!!! TGTTTTCAAACTGGTTTTAA+AGG - chr6_3:98193684-98193703 Msa0968060:CDS 25.0%
!!! CAACACATTTTATTTGCTTT+GGG - chr6_3:98194577-98194596 Msa0968060:exon 25.0%
!! AATTGTATTTGTTGATTGAG+TGG + chr6_3:98194680-98194699 None:intergenic 25.0%
! ACTCAATCAACAAATACAAT+TGG - chr6_3:98194679-98194698 Msa0968060:five_prime_UTR 25.0%
! ATAAAATATGAATAAAGCCG+TGG + chr6_3:98194766-98194785 None:intergenic 25.0%
TAATTAAAAAGTGACGCGTT+TGG + chr6_3:98191847-98191866 None:intergenic 30.0%
CATATCATCAAGATTAGAAG+TGG - chr6_3:98191879-98191898 Msa0968060:three_prime_UTR 30.0%
AAGAGTTGAAGGATTTGAAA+AGG + chr6_3:98192037-98192056 None:intergenic 30.0%
! TCCTTCAACTCTTTGAAAAA+TGG - chr6_3:98192044-98192063 Msa0968060:three_prime_UTR 30.0%
TAATAACTTCTTCAGACCTT+TGG - chr6_3:98192113-98192132 Msa0968060:CDS 30.0%
ACTAGTATCATACATAGAAG+TGG + chr6_3:98192172-98192191 None:intergenic 30.0%
CTTTCAGTCTTCAAAAAACT+AGG - chr6_3:98192199-98192218 Msa0968060:intron 30.0%
TAAGTAATGTGTCTATCACT+TGG - chr6_3:98192294-98192313 Msa0968060:intron 30.0%
CACCTAACATAAATGTTTCT+CGG + chr6_3:98192548-98192567 None:intergenic 30.0%
TTTGTTGAGAGAAATGCTTA+CGG + chr6_3:98193005-98193024 None:intergenic 30.0%
!! TAAGCATTGAATTGAAGTGT+CGG + chr6_3:98193069-98193088 None:intergenic 30.0%
!! TTTAAAAAAGCGTTGAGATG+TGG - chr6_3:98193257-98193276 Msa0968060:CDS 30.0%
GATGAATGCATTGAAAAACT+TGG - chr6_3:98193326-98193345 Msa0968060:intron 30.0%
AACGAACATGTACAATACAA+GGG + chr6_3:98193437-98193456 None:intergenic 30.0%
AAACGAACATGTACAATACA+AGG + chr6_3:98193438-98193457 None:intergenic 30.0%
AATTTATTTGGAGATGTGTG+TGG - chr6_3:98193490-98193509 Msa0968060:intron 30.0%
AAATCATGCTACAAAGTAGT+AGG + chr6_3:98193636-98193655 None:intergenic 30.0%
! AGAGTTACATGTTTTCAAAC+TGG - chr6_3:98193675-98193694 Msa0968060:CDS 30.0%
! TAGCTAGAACATGTTACTTA+AGG + chr6_3:98193942-98193961 None:intergenic 30.0%
! CTAGCTACTAATTCTGTTTT+TGG - chr6_3:98193955-98193974 Msa0968060:intron 30.0%
! ATTAACATTGCTGTTGAATC+TGG - chr6_3:98194059-98194078 Msa0968060:intron 30.0%
!! GCAACACATTTTATTTGCTT+TGG - chr6_3:98194576-98194595 Msa0968060:exon 30.0%
AGATAGCATGGAGATATATG+AGG + chr6_3:98191970-98191989 None:intergenic 35.0%
!!! GCCATTTTTCAAAGAGTTGA+AGG + chr6_3:98192048-98192067 None:intergenic 35.0%
! AACTCTTTGAAAAATGGCTG+TGG - chr6_3:98192050-98192069 Msa0968060:three_prime_UTR 35.0%
!! CTGCAAATGGATTTTTCCAA+AGG + chr6_3:98192132-98192151 None:intergenic 35.0%
! AACTAGGTAAGTACTTTTGG+TGG - chr6_3:98192215-98192234 Msa0968060:intron 35.0%
AAATACAACTAGGACGTGTT+TGG - chr6_3:98192448-98192467 Msa0968060:intron 35.0%
GTCCGAGAAACATTTATGTT+AGG - chr6_3:98192543-98192562 Msa0968060:intron 35.0%
TTGTTAATTGGGCTGATAGA+AGG - chr6_3:98192573-98192592 Msa0968060:CDS 35.0%
CAAAATGGACACTTCATTTG+AGG + chr6_3:98192679-98192698 None:intergenic 35.0%
CGAGAGTTAAAAGGAAATGT+TGG + chr6_3:98192846-98192865 None:intergenic 35.0%
!! ATTTCCTTTTAACTCTCGTG+TGG - chr6_3:98192848-98192867 Msa0968060:intron 35.0%
ATAGACTGAAACTGACACAT+TGG + chr6_3:98193100-98193119 None:intergenic 35.0%
! CAACAAGTTTTCCATCACAA+AGG - chr6_3:98193398-98193417 Msa0968060:intron 35.0%
AACTTTGATTGCAGTGATAC+AGG - chr6_3:98193513-98193532 Msa0968060:intron 35.0%
TAACATGATCACATATCACC+CGG - chr6_3:98193590-98193609 Msa0968060:intron 35.0%
ATACCAATTTCAGCTTGATG+TGG - chr6_3:98193826-98193845 Msa0968060:intron 35.0%
ATCATCGGTGATTGTTAAGT+GGG + chr6_3:98193861-98193880 None:intergenic 35.0%
ACAAGATCAACCAATAATCC+AGG + chr6_3:98194023-98194042 None:intergenic 35.0%
! CATTTGGAGCATGAATATCT+TGG + chr6_3:98194117-98194136 None:intergenic 35.0%
! TTGTAAAATGTAGGGGCTTT+TGG - chr6_3:98194217-98194236 Msa0968060:intron 35.0%
AAGTTTCATGTCAGCTACAA+TGG - chr6_3:98194248-98194267 Msa0968060:intron 35.0%
AAAATGCATGTGTACCTATC+TGG - chr6_3:98194468-98194487 Msa0968060:CDS 35.0%
ACAATTTGCCACTCAAAAAC+TGG + chr6_3:98194549-98194568 None:intergenic 35.0%
CAAATGCATTGCCAATATTG+TGG + chr6_3:98194613-98194632 None:intergenic 35.0%
CACAATATTGGCAATGCATT+TGG - chr6_3:98194611-98194630 Msa0968060:five_prime_UTR 35.0%
AATATTGGCAATGCATTTGG+AGG - chr6_3:98194614-98194633 Msa0968060:five_prime_UTR 35.0%
TTAAAAAGTGACGCGTTTGG+TGG + chr6_3:98191844-98191863 None:intergenic 40.0%
GTTCAATGAGACAGAAGACA+TGG + chr6_3:98191999-98192018 None:intergenic 40.0%
TTGAAAAATGGCTGTGGCTA+TGG - chr6_3:98192056-98192075 Msa0968060:three_prime_UTR 40.0%
CATAGAAGTGGTCTTCAAGA+TGG + chr6_3:98192160-98192179 None:intergenic 40.0%
GAATCAGCAACTTTAAGCAG+AGG + chr6_3:98192322-98192341 None:intergenic 40.0%
!! CTGCTTAAAGTTGCTGATTC+TGG - chr6_3:98192322-98192341 Msa0968060:intron 40.0%
!! ACAGCTGTTTCTGAGGTATT+TGG - chr6_3:98192763-98192782 Msa0968060:CDS 40.0%
TTCTCCACACGAGAGTTAAA+AGG + chr6_3:98192855-98192874 None:intergenic 40.0%
CTTGGGACTGAATGTTGTTA+AGG - chr6_3:98193344-98193363 Msa0968060:intron 40.0%
CAGTGATACAGGTAGAAAAG+TGG - chr6_3:98193524-98193543 Msa0968060:intron 40.0%
! TTTTGGACTTATGCCTCCAA+AGG - chr6_3:98193738-98193757 Msa0968060:CDS 40.0%
TGTCCACATCAAGCTGAAAT+TGG + chr6_3:98193832-98193851 None:intergenic 40.0%
CATCATCGGTGATTGTTAAG+TGG + chr6_3:98193862-98193881 None:intergenic 40.0%
CACTTAACAATCACCGATGA+TGG - chr6_3:98193860-98193879 Msa0968060:intron 40.0%
ATCTGGTGAATTTGACACTG+AGG - chr6_3:98194076-98194095 Msa0968060:intron 40.0%
TTAACAAGAACCTGCCAGAT+AGG + chr6_3:98194485-98194504 None:intergenic 40.0%
AAACTGGATTCCTCAGTTGT+AGG + chr6_3:98194533-98194552 None:intergenic 40.0%
!! TGAGGAATCCAGTTTTTGAG+TGG - chr6_3:98194538-98194557 Msa0968060:CDS 40.0%
GAATATTGTTAGCCCAAAGC+TGG - chr6_3:98194646-98194665 Msa0968060:five_prime_UTR 40.0%
ACATGGCTTAGCAGATAGCA+TGG + chr6_3:98191982-98192001 None:intergenic 45.0%
AGAAGTGGTCTTCAAGATGG+AGG + chr6_3:98192157-98192176 None:intergenic 45.0%
!! CGTGTTTGGTGTTAGAAACG+AGG - chr6_3:98192462-98192481 Msa0968060:intron 45.0%
TTAACTCTCGTGTGGAGAAC+AGG - chr6_3:98192856-98192875 Msa0968060:intron 45.0%
GGAGAACAGGATGGAAATCA+AGG - chr6_3:98192869-98192888 Msa0968060:intron 45.0%
ACTGTCGTCGAGATTACCTT+TGG - chr6_3:98192953-98192972 Msa0968060:intron 45.0%
! ATTACCTTTGGTGATCGCCT+TGG - chr6_3:98192965-98192984 Msa0968060:intron 45.0%
TAGTGCTTACGCCTTTGTGA+TGG + chr6_3:98193412-98193431 None:intergenic 45.0%
GGAAGATCCAGAGTTGTTAG+AGG - chr6_3:98193545-98193564 Msa0968060:intron 45.0%
! AACTGAGAAGCATAGGTACC+GGG + chr6_3:98193611-98193630 None:intergenic 45.0%
! CAACTGAGAAGCATAGGTAC+CGG + chr6_3:98193612-98193631 None:intergenic 45.0%
! GTAGGACAACTGAGAAGCAT+AGG + chr6_3:98193618-98193637 None:intergenic 45.0%
! TCAAGTGCCCAATTAGCTCT+AGG - chr6_3:98193709-98193728 Msa0968060:CDS 45.0%
AGCTGCTCCTAGAGCTAATT+GGG + chr6_3:98193719-98193738 None:intergenic 45.0%
AAGCTGCTCCTAGAGCTAAT+TGG + chr6_3:98193720-98193739 None:intergenic 45.0%
!!! TTAGCTCTAGGAGCAGCTTT+TGG - chr6_3:98193721-98193740 Msa0968060:CDS 45.0%
GAATTCATCACCTGCTCCTT+TGG + chr6_3:98193757-98193776 None:intergenic 45.0%
AAAGATCACCACCTTCTGTC+AGG + chr6_3:98193887-98193906 None:intergenic 45.0%
TGTATGTGGAGACAGCTGAT+CGG - chr6_3:98193997-98194016 Msa0968060:intron 45.0%
!! AATGTAGGGGCTTTTGGCTA+AGG - chr6_3:98194223-98194242 Msa0968060:intron 45.0%
TGCATCAACCAATTACCTGC+TGG + chr6_3:98194295-98194314 None:intergenic 45.0%
GTGGAATGTACTCCAGCTTT+GGG + chr6_3:98194661-98194680 None:intergenic 45.0%
AGTGGAATGTACTCCAGCTT+TGG + chr6_3:98194662-98194681 None:intergenic 45.0%
CTTCTTGCTTTGCACTTCCA+CGG - chr6_3:98194746-98194765 Msa0968060:five_prime_UTR 45.0%
!! CAAGATGGAGGCACTGCAAA+TGG + chr6_3:98192145-98192164 None:intergenic 50.0%
CAACTTGGGAAGTGACTGCT+TGG - chr6_3:98192647-98192666 Msa0968060:intron 50.0%
CAGAAACAGCTGTTGCTCGA+GGG + chr6_3:98192756-98192775 None:intergenic 50.0%
TCAGAAACAGCTGTTGCTCG+AGG + chr6_3:98192757-98192776 None:intergenic 50.0%
!! TCGAGCAACAGCTGTTTCTG+AGG - chr6_3:98192756-98192775 Msa0968060:CDS 50.0%
ATCTCGACGACAGTTGCATC+AGG + chr6_3:98192947-98192966 None:intergenic 50.0%
TGTTAAGGCAAGCGTGTGTC+TGG - chr6_3:98193359-98193378 Msa0968060:intron 50.0%
CGGATTGCCTCTAACAACTC+TGG + chr6_3:98193555-98193574 None:intergenic 50.0%
ACTTATGCCTCCAAAGGAGC+AGG - chr6_3:98193744-98193763 Msa0968060:CDS 50.0%
TTCATCACCTGCTCCTTTGG+AGG + chr6_3:98193754-98193773 None:intergenic 50.0%
CCTTCTGTCAGGACCATCAT+CGG + chr6_3:98193876-98193895 None:intergenic 50.0%
ATGATGGTCCTGACAGAAGG+TGG - chr6_3:98193876-98193895 Msa0968060:CDS 50.0%
!! GTGCTGCAGTTTGCTGTATG+TGG - chr6_3:98193983-98194002 Msa0968060:intron 50.0%
AGCTGATCGGCCTGGATTAT+TGG - chr6_3:98194010-98194029 Msa0968060:intron 50.0%
AAGCCTCTCCAGCAGGTAAT+TGG - chr6_3:98194284-98194303 Msa0968060:intron 50.0%
CAACCAATTACCTGCTGGAG+AGG + chr6_3:98194290-98194309 None:intergenic 50.0%
TGCATGTGTACCTATCTGGC+AGG - chr6_3:98194472-98194491 Msa0968060:CDS 50.0%
! CTTGACTCGTCCTACAACTG+AGG - chr6_3:98194520-98194539 Msa0968060:CDS 50.0%
GCTATGGCTGCTTGCAGTCT+TGG - chr6_3:98192072-98192091 Msa0968060:three_prime_UTR 55.0%
CTCTCGTGTGGAGAACAGGA+TGG - chr6_3:98192860-98192879 Msa0968060:intron 55.0%
AGCACCAAGGCGATCACCAA+AGG + chr6_3:98192972-98192991 None:intergenic 55.0%
!! CGGTGTCAAGAAGAGCACCA+AGG + chr6_3:98192985-98193004 None:intergenic 55.0%
AGCGTGTGTCTGGACTCTTC+TGG - chr6_3:98193369-98193388 Msa0968060:intron 55.0%
! CCGATGATGGTCCTGACAGA+AGG - chr6_3:98193873-98193892 Msa0968060:CDS 55.0%
TACCTGCTGGAGAGGCTTGA+TGG + chr6_3:98194282-98194301 None:intergenic 55.0%
CTGCTGGAGAGGCTTGATGG+TGG + chr6_3:98194279-98194298 None:intergenic 60.0%
CACCATCAAGCCTCTCCAGC+AGG - chr6_3:98194277-98194296 Msa0968060:intron 60.0%
GTGGAGACAGCTGATCGGCC+TGG - chr6_3:98194002-98194021 Msa0968060:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98191831 98194818 98191831 ID=Msa0968060;Name=Msa0968060
chr6_3 mRNA 98191831 98194818 98191831 ID=Msa0968060-mRNA-1;Parent=Msa0968060;Name=Msa0968060-mRNA-1;_AED=0.11;_eAED=0.11;_QI=232|1|1|1|1|1|10|262|289
chr6_3 exon 98191831 98192155 98191831 ID=Msa0968060-mRNA-1:exon:18428;Parent=Msa0968060-mRNA-1
chr6_3 exon 98192351 98192419 98192351 ID=Msa0968060-mRNA-1:exon:18427;Parent=Msa0968060-mRNA-1
chr6_3 exon 98192552 98192657 98192552 ID=Msa0968060-mRNA-1:exon:18426;Parent=Msa0968060-mRNA-1
chr6_3 exon 98192755 98192810 98192755 ID=Msa0968060-mRNA-1:exon:18425;Parent=Msa0968060-mRNA-1
chr6_3 exon 98192884 98192943 98192884 ID=Msa0968060-mRNA-1:exon:18424;Parent=Msa0968060-mRNA-1
chr6_3 exon 98193038 98193122 98193038 ID=Msa0968060-mRNA-1:exon:18423;Parent=Msa0968060-mRNA-1
chr6_3 exon 98193228 98193322 98193228 ID=Msa0968060-mRNA-1:exon:18422;Parent=Msa0968060-mRNA-1
chr6_3 exon 98193646 98193771 98193646 ID=Msa0968060-mRNA-1:exon:18421;Parent=Msa0968060-mRNA-1
chr6_3 exon 98193872 98193923 98193872 ID=Msa0968060-mRNA-1:exon:18420;Parent=Msa0968060-mRNA-1
chr6_3 exon 98194429 98194818 98194429 ID=Msa0968060-mRNA-1:exon:18419;Parent=Msa0968060-mRNA-1
chr6_3 five_prime_UTR 98194587 98194818 98194587 ID=Msa0968060-mRNA-1:five_prime_utr;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98194429 98194586 98194429 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98193872 98193923 98193872 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98193646 98193771 98193646 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98193228 98193322 98193228 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98193038 98193122 98193038 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98192884 98192943 98192884 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98192755 98192810 98192755 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98192552 98192657 98192552 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98192351 98192419 98192351 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 CDS 98192093 98192155 98192093 ID=Msa0968060-mRNA-1:cds;Parent=Msa0968060-mRNA-1
chr6_3 three_prime_UTR 98191831 98192092 98191831 ID=Msa0968060-mRNA-1:three_prime_utr;Parent=Msa0968060-mRNA-1
Gene Sequence

>Msa0968060

ATGGCTGTGGCTATGGCTGCTTGCAGTCTTGGACTTCACTTGAGTTCTGATAATAACTTCTTCAGACCTTTGGAAAAATCCATTTGCAGTGCCTCCATCTTGAAGACCACTTCTATGTATGATACTAGTAAACTATCTTTCAGTCTTCAAAAAACTAGATTATCATCTTCAGCAATTACAATCATCCCTCGAGCAACAGCTGTTTCTGAGGATGGAAATCAAGGTGTTGCTGATACTGTCCCAACACCTATAGTTATAATTGATCAAGACTCTGATCCTGATGCAACTGTCGTCGAGATTACCTTTGGTGATCGCCTTGGTGCTCTTCTTGACACCATGAATGCATTGAAAAACTTGGGACTGAATGTTGTTAAGGCAAGCGTGTGTCTGGACTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAGGCTGATACAGGTAGAAAAGTGGAAGATCCAGAGTTGTTAGAGGCAATCCGTTTGACAATTTTAAATAACATGATCACATATCACCCGGAATCAAGTGCCCAATTAGCTCTAGGAGCAGCTTTTGGACTTATGCCTCCAAAGGAGCAGCTTGATGTGGACATAGCGACCCACTTAACAATCACCGATGATGGTCCTGACAGAAGTTTGCTGTATGTGGAGACAGCTGATCGGCCTGGATTATTGGTTGATCTTGTAAAGATTATTACTGACATTAACATTGCTGTTGAATCTGGTGAATTTGACACTGAGGGGCTTTTGGCTAAGGCAAAGTTTCATGTCAGCTACAATGGTAAAGCCACCATCAAGCCTCTCCAGCAGGTTCTTGTTAACAGCTTGAGATACTTCTTGACTCGTCCTACAACTGAGGAATCCAGTTTTTGA

Protein sequence

>Msa0968060

MAVAMAACSLGLHLSSDNNFFRPLEKSICSASILKTTSMYDTSKLSFSLQKTRLSSSAITIIPRATAVSEDGNQGVADTVPTPIVIIDQDSDPDATVVEITFGDRLGALLDTMNALKNLGLNVVKASVCLDSSGKHNKFSITKADTGRKVEDPELLEAIRLTILNNMITYHPESSAQLALGAAFGLMPPKEQLDVDIATHLTITDDGPDRSLLYVETADRPGLLVDLVKIITDINIAVESGEFDTEGLLAKAKFHVSYNGKATIKPLQQVLVNSLRYFLTRPTTEESSF*