AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0308740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0308740 MtrunA17_Chr2g0289321 90.230 174 16 1 1 173 1 174 1.55e-106 305
Msa0308740 MtrunA17_Chr4g0075411 50.794 189 66 6 1 173 1 178 5.00e-43 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0308740 AT4G03965.1 45.604 182 78 6 1 173 1 170 2.12e-34 121
Msa0308740 AT4G22250.1 42.593 162 75 9 21 173 23 175 1.74e-24 96.3
Msa0308740 AT1G62370.1 30.846 201 97 10 1 185 1 175 7.56e-13 65.1

Find 76 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAACGGTTTGGATTTAT+TGG 0.182452 2_4:+3143442 Msa0308740:CDS
TTGGATGCTGTGGGGCCAAT+TGG 0.283458 2_4:+3143461 Msa0308740:CDS
TGGATGCTGTGGGGCCAATT+GGG 0.286154 2_4:+3143462 Msa0308740:CDS
TCTACTAATGATTGTTTGAT+AGG 0.314407 2_4:-3144426 None:intergenic
CAACGATTCTCGGTTTGTTA+AGG 0.332079 2_4:+3143371 Msa0308740:CDS
CGGTGATACGGTGGCGGTTA+AGG 0.338807 2_4:+3143741 Msa0308740:CDS
AGCAGAGAGGGGAGGATGCC+AGG 0.341804 2_4:+3143670 Msa0308740:CDS
AACGATTCTCGGTTTGTTAA+GGG 0.364073 2_4:+3143372 Msa0308740:CDS
CGGAGTTTCAAGGAACGGTT+TGG 0.366789 2_4:+3143433 Msa0308740:CDS
GTTTGTATGGGGAGGAATAA+AGG 0.376604 2_4:+3143811 Msa0308740:CDS
CTGCTACTCGTTTCCGCCGC+TGG 0.393440 2_4:-3143652 None:intergenic
TTCAGTGTGTTGCGTTTGTA+TGG 0.395970 2_4:+3143798 Msa0308740:CDS
CGGTTTGTTAAGGGAACAAA+TGG 0.406995 2_4:+3143381 Msa0308740:CDS
ACTCAGTCAACAACGATTCT+CGG 0.410134 2_4:+3143361 Msa0308740:CDS
CGGTTTATTATTGCAAGAAC+CGG 0.412259 2_4:+3143327 Msa0308740:CDS
TCTTGCTGCGGCGTTGGCGG+CGG 0.414122 2_4:+3143612 Msa0308740:CDS
ACCGGAGCCACACACATATT+CGG 0.415523 2_4:-3143556 None:intergenic
GAATCTTGCTGCGGCGTTGG+CGG 0.416368 2_4:+3143609 Msa0308740:CDS
GACACTCTCCACGGCGTCCC+TGG 0.418136 2_4:-3143688 None:intergenic
TCGTTTCCGCCGCTGGTCCT+CGG 0.452026 2_4:-3143645 None:intergenic
TATGAATCTTGCTGCGGCGT+TGG 0.458195 2_4:+3143606 Msa0308740:CDS
TTGGATTTATTGGATGCTGT+GGG 0.466650 2_4:+3143452 Msa0308740:CDS
GGCGGTTAAGGCGGAGGAGA+AGG 0.469647 2_4:+3143753 Msa0308740:CDS
AGTGTCGTTGATGCGGTTGT+TGG 0.470381 2_4:+3143705 Msa0308740:CDS
GGATGCTGTGGGGCCAATTG+GGG 0.478261 2_4:+3143463 Msa0308740:CDS
GCGGAAACGAGTAGCAGAGA+GGG 0.496963 2_4:+3143658 Msa0308740:CDS
CTCGAACCAGTTTGAATCAC+CGG 0.499393 2_4:-3143574 None:intergenic
GAACAAATGGACGGTGTTGA+TGG 0.500960 2_4:+3143394 Msa0308740:CDS
GATGCGGTTGTTGGAGGAAA+CGG 0.502011 2_4:+3143714 Msa0308740:CDS
TTTGGATTTATTGGATGCTG+TGG 0.505006 2_4:+3143451 Msa0308740:CDS
GACTGAGTTTGAGACTGAAC+CGG 0.505067 2_4:-3143346 None:intergenic
AGAAGAACGGAATCCCCAAT+TGG 0.510016 2_4:-3143476 None:intergenic
TCAGTGTGTTGCGTTTGTAT+GGG 0.512290 2_4:+3143799 Msa0308740:CDS
TACGGTGGCGGTTAAGGCGG+AGG 0.514169 2_4:+3143747 Msa0308740:CDS
TCCGAATATGTGTGTGGCTC+CGG 0.514268 2_4:+3143555 Msa0308740:CDS
GCAGAGAGGGGAGGATGCCA+GGG 0.514827 2_4:+3143671 Msa0308740:CDS
CACATATTCGGATCTTCACT+CGG 0.516936 2_4:-3143544 None:intergenic
GTGGCTCCGGTGATTCAAAC+TGG 0.523146 2_4:+3143568 Msa0308740:CDS
ACGTCGGAGACGGAGTTTCA+AGG 0.523784 2_4:+3143423 Msa0308740:CDS
GTCGTTGATGCGGTTGTTGG+AGG 0.526999 2_4:+3143708 Msa0308740:CDS
GAGAAGGTTGATGCTGTGGC+GGG 0.541318 2_4:+3143769 Msa0308740:CDS
CGGTAAGGTCAACTTTGTGA+TGG 0.542404 2_4:-3144387 None:intergenic
TCAGCCACGGATTCTTGATA+CGG 0.563090 2_4:+3143519 Msa0308740:CDS
GGAGGATGCCAGGGACGCCG+TGG 0.564167 2_4:+3143680 Msa0308740:CDS
ATGGTGTGCCACGTCGGAGA+CGG 0.568575 2_4:+3143413 Msa0308740:CDS
CAGTGTGTTGCGTTTGTATG+GGG 0.572597 2_4:+3143800 Msa0308740:CDS
AGACAAAAGAAAAGTCGGTA+AGG 0.579812 2_4:-3144402 None:intergenic
GGAGAAGGTTGATGCTGTGG+CGG 0.584424 2_4:+3143768 Msa0308740:CDS
GGAAACGGAAAACGGTGATA+CGG 0.591037 2_4:+3143729 Msa0308740:CDS
TGATACGGTGGCGGTTAAGG+CGG 0.595277 2_4:+3143744 Msa0308740:CDS
GGTAAGGTCAACTTTGTGAT+GGG 0.595809 2_4:-3144386 None:intergenic
TGGATTTATTGGATGCTGTG+GGG 0.595995 2_4:+3143453 Msa0308740:CDS
GGAGGAGAAGGTTGATGCTG+TGG 0.597954 2_4:+3143765 Msa0308740:CDS
GTGATTCAGAAGAAGAAGAA+CGG 0.598863 2_4:-3143489 None:intergenic
TTGTTGGAGGAAACGGAAAA+CGG 0.606520 2_4:+3143721 Msa0308740:CDS
TTCGAGTATGAATCTTGCTG+CGG 0.609891 2_4:+3143600 Msa0308740:CDS
GGAGACGGAGTTTCAAGGAA+CGG 0.610966 2_4:+3143428 Msa0308740:CDS
TAGGAAGACAAAAGAAAAGT+CGG 0.612200 2_4:-3144407 None:intergenic
CGCATCAACGACACTCTCCA+CGG 0.617567 2_4:-3143697 None:intergenic
AAGACAACTCCGAGGACCAG+CGG 0.621097 2_4:+3143636 Msa0308740:CDS
GGCGGAAACGAGTAGCAGAG+AGG 0.626935 2_4:+3143657 Msa0308740:CDS
GAGAGAAATATGAGTCAACT+CGG 0.630187 2_4:+3143307 None:intergenic
CGGAAACGAGTAGCAGAGAG+GGG 0.639986 2_4:+3143659 Msa0308740:CDS
TTGAAACTCCGTCTCCGACG+TGG 0.647313 2_4:-3143421 None:intergenic
TGTGTTGCGTTTGTATGGGG+AGG 0.653722 2_4:+3143803 Msa0308740:CDS
ACAACTCCGAGGACCAGCGG+CGG 0.656277 2_4:+3143639 Msa0308740:CDS
TTGTTAAGGGAACAAATGGA+CGG 0.656465 2_4:+3143385 Msa0308740:CDS
GGAAAACGGTGATACGGTGG+CGG 0.658656 2_4:+3143735 Msa0308740:CDS
AAACGAGTAGCAGAGAGGGG+AGG 0.665056 2_4:+3143662 Msa0308740:CDS
CGTGGAGAGTGTCGTTGATG+CGG 0.674817 2_4:+3143698 Msa0308740:CDS
AACGGAAAACGGTGATACGG+TGG 0.698643 2_4:+3143732 Msa0308740:CDS
AATCACAACAGAATCAGCCA+CGG 0.698955 2_4:+3143506 Msa0308740:CDS
GTGTTGATGGTGTGCCACGT+CGG 0.713199 2_4:+3143407 Msa0308740:CDS
GGATCCGTATCAAGAATCCG+TGG 0.721967 2_4:-3143523 None:intergenic
TGAAGATCCGAATATGTGTG+TGG 0.744872 2_4:+3143549 Msa0308740:CDS
GCGGCGGAAAGACAACTCCG+AGG 0.786602 2_4:+3143628 Msa0308740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTTTAGAAAATTTTA+CGG + chr2_4:3143944-3143963 Msa0308740:intron 10.0%
!!! TTTTGATTTATTTTACTTTA+TGG + chr2_4:3144226-3144245 Msa0308740:intron 10.0%
!!! ACATTTTTTAGAAAATTTTA+CGG + chr2_4:3143944-3143963 Msa0308740:intron 10.0%
!!! TTTTGATTTATTTTACTTTA+TGG + chr2_4:3144226-3144245 Msa0308740:intron 10.0%
!!! TTTTTTTTTTTGGTTACTTA+TGG + chr2_4:3144257-3144276 Msa0308740:intron 15.0%
!!! TTTTTTTTTTTGGTTACTTA+TGG + chr2_4:3144257-3144276 Msa0308740:intron 15.0%
!!! TTTATTTTACTTTATGGTTG+TGG + chr2_4:3144232-3144251 Msa0308740:intron 20.0%
!!! TTTATTTTACTTTATGGTTG+TGG + chr2_4:3144232-3144251 Msa0308740:intron 20.0%
! ATGTTTGATATCATGAAAGA+TGG - chr2_4:3144017-3144036 None:intergenic 25.0%
!!! GGTTGTGGATTTTTTTTTTT+TGG + chr2_4:3144247-3144266 Msa0308740:intron 25.0%
! ATGTTTGATATCATGAAAGA+TGG - chr2_4:3144017-3144036 None:intergenic 25.0%
!!! GGTTGTGGATTTTTTTTTTT+TGG + chr2_4:3144247-3144266 Msa0308740:intron 25.0%
ACAATAGAACGATTACAAAG+GGG - chr2_4:3143913-3143932 None:intergenic 30.0%
GACAATAGAACGATTACAAA+GGG - chr2_4:3143914-3143933 None:intergenic 30.0%
GATTGTACTTGTAGAACATT+TGG - chr2_4:3144128-3144147 None:intergenic 30.0%
TGAATATGATGATCATCCAT+TGG + chr2_4:3144177-3144196 Msa0308740:intron 30.0%
!!! TTTTTGGTTACTTATGGTTG+TGG + chr2_4:3144263-3144282 Msa0308740:intron 30.0%
TAGGAAGACAAAAGAAAAGT+CGG - chr2_4:3144410-3144429 None:intergenic 30.0%
ACAATAGAACGATTACAAAG+GGG - chr2_4:3143913-3143932 None:intergenic 30.0%
GACAATAGAACGATTACAAA+GGG - chr2_4:3143914-3143933 None:intergenic 30.0%
GATTGTACTTGTAGAACATT+TGG - chr2_4:3144128-3144147 None:intergenic 30.0%
TGAATATGATGATCATCCAT+TGG + chr2_4:3144177-3144196 Msa0308740:intron 30.0%
!!! TTTTTGGTTACTTATGGTTG+TGG + chr2_4:3144263-3144282 Msa0308740:intron 30.0%
TAGGAAGACAAAAGAAAAGT+CGG - chr2_4:3144410-3144429 None:intergenic 30.0%
CGGTTTATTATTGCAAGAAC+CGG + chr2_4:3143327-3143346 Msa0308740:CDS 35.0%
!! AACGATTCTCGGTTTGTTAA+GGG + chr2_4:3143372-3143391 Msa0308740:CDS 35.0%
TTGTTAAGGGAACAAATGGA+CGG + chr2_4:3143385-3143404 Msa0308740:CDS 35.0%
! AAGGAACGGTTTGGATTTAT+TGG + chr2_4:3143442-3143461 Msa0308740:CDS 35.0%
TTTGGATTTATTGGATGCTG+TGG + chr2_4:3143451-3143470 Msa0308740:CDS 35.0%
TTGGATTTATTGGATGCTGT+GGG + chr2_4:3143452-3143471 Msa0308740:CDS 35.0%
GTGATTCAGAAGAAGAAGAA+CGG - chr2_4:3143492-3143511 None:intergenic 35.0%
!! ATGTGGACATACTTTTTGCA+GGG + chr2_4:3143849-3143868 Msa0308740:intron 35.0%
!! TTTTTGCAGGGTTTGTTCTA+GGG + chr2_4:3143861-3143880 Msa0308740:intron 35.0%
CGACAATAGAACGATTACAA+AGG - chr2_4:3143915-3143934 None:intergenic 35.0%
CATCCATTGGACAAAAAAGT+CGG + chr2_4:3144190-3144209 Msa0308740:intron 35.0%
AGACAAAAGAAAAGTCGGTA+AGG - chr2_4:3144405-3144424 None:intergenic 35.0%
CGGTTTATTATTGCAAGAAC+CGG + chr2_4:3143327-3143346 Msa0308740:CDS 35.0%
!! AACGATTCTCGGTTTGTTAA+GGG + chr2_4:3143372-3143391 Msa0308740:CDS 35.0%
TTGTTAAGGGAACAAATGGA+CGG + chr2_4:3143385-3143404 Msa0308740:CDS 35.0%
! AAGGAACGGTTTGGATTTAT+TGG + chr2_4:3143442-3143461 Msa0308740:CDS 35.0%
TTTGGATTTATTGGATGCTG+TGG + chr2_4:3143451-3143470 Msa0308740:CDS 35.0%
TTGGATTTATTGGATGCTGT+GGG + chr2_4:3143452-3143471 Msa0308740:CDS 35.0%
GTGATTCAGAAGAAGAAGAA+CGG - chr2_4:3143492-3143511 None:intergenic 35.0%
!! ATGTGGACATACTTTTTGCA+GGG + chr2_4:3143849-3143868 Msa0308740:intron 35.0%
!! TTTTTGCAGGGTTTGTTCTA+GGG + chr2_4:3143861-3143880 Msa0308740:intron 35.0%
CGACAATAGAACGATTACAA+AGG - chr2_4:3143915-3143934 None:intergenic 35.0%
CATCCATTGGACAAAAAAGT+CGG + chr2_4:3144190-3144209 Msa0308740:intron 35.0%
AGACAAAAGAAAAGTCGGTA+AGG - chr2_4:3144405-3144424 None:intergenic 35.0%
ACTCAGTCAACAACGATTCT+CGG + chr2_4:3143361-3143380 Msa0308740:CDS 40.0%
!! CAACGATTCTCGGTTTGTTA+AGG + chr2_4:3143371-3143390 Msa0308740:CDS 40.0%
!! CGGTTTGTTAAGGGAACAAA+TGG + chr2_4:3143381-3143400 Msa0308740:CDS 40.0%
TGGATTTATTGGATGCTGTG+GGG + chr2_4:3143453-3143472 Msa0308740:CDS 40.0%
AATCACAACAGAATCAGCCA+CGG + chr2_4:3143506-3143525 Msa0308740:CDS 40.0%
CACATATTCGGATCTTCACT+CGG - chr2_4:3143547-3143566 None:intergenic 40.0%
TGAAGATCCGAATATGTGTG+TGG + chr2_4:3143549-3143568 Msa0308740:CDS 40.0%
TTCGAGTATGAATCTTGCTG+CGG + chr2_4:3143600-3143619 Msa0308740:CDS 40.0%
TTGTTGGAGGAAACGGAAAA+CGG + chr2_4:3143721-3143740 Msa0308740:CDS 40.0%
TTCAGTGTGTTGCGTTTGTA+TGG + chr2_4:3143798-3143817 Msa0308740:CDS 40.0%
TCAGTGTGTTGCGTTTGTAT+GGG + chr2_4:3143799-3143818 Msa0308740:CDS 40.0%
GTTTGTATGGGGAGGAATAA+AGG + chr2_4:3143811-3143830 Msa0308740:CDS 40.0%
! CTGCAAAAAGTATGTCCACA+TGG - chr2_4:3143850-3143869 None:intergenic 40.0%
!! CATGTGGACATACTTTTTGC+AGG + chr2_4:3143848-3143867 Msa0308740:intron 40.0%
!! CTTTTTGCAGGGTTTGTTCT+AGG + chr2_4:3143860-3143879 Msa0308740:intron 40.0%
GGTAAGGTCAACTTTGTGAT+GGG - chr2_4:3144389-3144408 None:intergenic 40.0%
ACTCAGTCAACAACGATTCT+CGG + chr2_4:3143361-3143380 Msa0308740:CDS 40.0%
!! CAACGATTCTCGGTTTGTTA+AGG + chr2_4:3143371-3143390 Msa0308740:CDS 40.0%
!! CGGTTTGTTAAGGGAACAAA+TGG + chr2_4:3143381-3143400 Msa0308740:CDS 40.0%
TGGATTTATTGGATGCTGTG+GGG + chr2_4:3143453-3143472 Msa0308740:CDS 40.0%
AATCACAACAGAATCAGCCA+CGG + chr2_4:3143506-3143525 Msa0308740:CDS 40.0%
CACATATTCGGATCTTCACT+CGG - chr2_4:3143547-3143566 None:intergenic 40.0%
TGAAGATCCGAATATGTGTG+TGG + chr2_4:3143549-3143568 Msa0308740:CDS 40.0%
TTCGAGTATGAATCTTGCTG+CGG + chr2_4:3143600-3143619 Msa0308740:CDS 40.0%
TTGTTGGAGGAAACGGAAAA+CGG + chr2_4:3143721-3143740 Msa0308740:CDS 40.0%
TTCAGTGTGTTGCGTTTGTA+TGG + chr2_4:3143798-3143817 Msa0308740:CDS 40.0%
TCAGTGTGTTGCGTTTGTAT+GGG + chr2_4:3143799-3143818 Msa0308740:CDS 40.0%
GTTTGTATGGGGAGGAATAA+AGG + chr2_4:3143811-3143830 Msa0308740:CDS 40.0%
! CTGCAAAAAGTATGTCCACA+TGG - chr2_4:3143850-3143869 None:intergenic 40.0%
!! CATGTGGACATACTTTTTGC+AGG + chr2_4:3143848-3143867 Msa0308740:intron 40.0%
!! CTTTTTGCAGGGTTTGTTCT+AGG + chr2_4:3143860-3143879 Msa0308740:intron 40.0%
GGTAAGGTCAACTTTGTGAT+GGG - chr2_4:3144389-3144408 None:intergenic 40.0%
! GACTGAGTTTGAGACTGAAC+CGG - chr2_4:3143349-3143368 None:intergenic 45.0%
! GAACAAATGGACGGTGTTGA+TGG + chr2_4:3143394-3143413 Msa0308740:CDS 45.0%
AGAAGAACGGAATCCCCAAT+TGG - chr2_4:3143479-3143498 None:intergenic 45.0%
TCAGCCACGGATTCTTGATA+CGG + chr2_4:3143519-3143538 Msa0308740:CDS 45.0%
CTCGAACCAGTTTGAATCAC+CGG - chr2_4:3143577-3143596 None:intergenic 45.0%
GGAAACGGAAAACGGTGATA+CGG + chr2_4:3143729-3143748 Msa0308740:CDS 45.0%
CAGTGTGTTGCGTTTGTATG+GGG + chr2_4:3143800-3143819 Msa0308740:CDS 45.0%
TATGGGGAGGAATAAAGGTG+CGG + chr2_4:3143816-3143835 Msa0308740:intron 45.0%
TCTGATACCAAACATGCACG+TGG - chr2_4:3143970-3143989 None:intergenic 45.0%
!!! CAGCCGACTTTTTTGTCCAA+TGG - chr2_4:3144196-3144215 None:intergenic 45.0%
CGGTAAGGTCAACTTTGTGA+TGG - chr2_4:3144390-3144409 None:intergenic 45.0%
! GACTGAGTTTGAGACTGAAC+CGG - chr2_4:3143349-3143368 None:intergenic 45.0%
! GAACAAATGGACGGTGTTGA+TGG + chr2_4:3143394-3143413 Msa0308740:CDS 45.0%
AGAAGAACGGAATCCCCAAT+TGG - chr2_4:3143479-3143498 None:intergenic 45.0%
TCAGCCACGGATTCTTGATA+CGG + chr2_4:3143519-3143538 Msa0308740:CDS 45.0%
CTCGAACCAGTTTGAATCAC+CGG - chr2_4:3143577-3143596 None:intergenic 45.0%
GGAAACGGAAAACGGTGATA+CGG + chr2_4:3143729-3143748 Msa0308740:CDS 45.0%
CAGTGTGTTGCGTTTGTATG+GGG + chr2_4:3143800-3143819 Msa0308740:CDS 45.0%
TATGGGGAGGAATAAAGGTG+CGG + chr2_4:3143816-3143835 Msa0308740:intron 45.0%
TCTGATACCAAACATGCACG+TGG - chr2_4:3143970-3143989 None:intergenic 45.0%
!!! CAGCCGACTTTTTTGTCCAA+TGG - chr2_4:3144196-3144215 None:intergenic 45.0%
CGGTAAGGTCAACTTTGTGA+TGG - chr2_4:3144390-3144409 None:intergenic 45.0%
GGAGACGGAGTTTCAAGGAA+CGG + chr2_4:3143428-3143447 Msa0308740:CDS 50.0%
CGGAGTTTCAAGGAACGGTT+TGG + chr2_4:3143433-3143452 Msa0308740:CDS 50.0%
GGATCCGTATCAAGAATCCG+TGG - chr2_4:3143526-3143545 None:intergenic 50.0%
TCCGAATATGTGTGTGGCTC+CGG + chr2_4:3143555-3143574 Msa0308740:CDS 50.0%
ACCGGAGCCACACACATATT+CGG - chr2_4:3143559-3143578 None:intergenic 50.0%
TATGAATCTTGCTGCGGCGT+TGG + chr2_4:3143606-3143625 Msa0308740:CDS 50.0%
! AGTGTCGTTGATGCGGTTGT+TGG + chr2_4:3143705-3143724 Msa0308740:CDS 50.0%
GATGCGGTTGTTGGAGGAAA+CGG + chr2_4:3143714-3143733 Msa0308740:CDS 50.0%
AACGGAAAACGGTGATACGG+TGG + chr2_4:3143732-3143751 Msa0308740:CDS 50.0%
TGTGTTGCGTTTGTATGGGG+AGG + chr2_4:3143803-3143822 Msa0308740:CDS 50.0%
AGGGAGCTGTGGTTGAATAG+AGG + chr2_4:3143880-3143899 Msa0308740:intron 50.0%
TTTACGGCCACGTGCATGTT+TGG + chr2_4:3143960-3143979 Msa0308740:intron 50.0%
GGAGACGGAGTTTCAAGGAA+CGG + chr2_4:3143428-3143447 Msa0308740:CDS 50.0%
CGGAGTTTCAAGGAACGGTT+TGG + chr2_4:3143433-3143452 Msa0308740:CDS 50.0%
GGATCCGTATCAAGAATCCG+TGG - chr2_4:3143526-3143545 None:intergenic 50.0%
TCCGAATATGTGTGTGGCTC+CGG + chr2_4:3143555-3143574 Msa0308740:CDS 50.0%
ACCGGAGCCACACACATATT+CGG - chr2_4:3143559-3143578 None:intergenic 50.0%
TATGAATCTTGCTGCGGCGT+TGG + chr2_4:3143606-3143625 Msa0308740:CDS 50.0%
! AGTGTCGTTGATGCGGTTGT+TGG + chr2_4:3143705-3143724 Msa0308740:CDS 50.0%
GATGCGGTTGTTGGAGGAAA+CGG + chr2_4:3143714-3143733 Msa0308740:CDS 50.0%
AACGGAAAACGGTGATACGG+TGG + chr2_4:3143732-3143751 Msa0308740:CDS 50.0%
TGTGTTGCGTTTGTATGGGG+AGG + chr2_4:3143803-3143822 Msa0308740:CDS 50.0%
AGGGAGCTGTGGTTGAATAG+AGG + chr2_4:3143880-3143899 Msa0308740:intron 50.0%
TTTACGGCCACGTGCATGTT+TGG + chr2_4:3143960-3143979 Msa0308740:intron 50.0%
!! GTGTTGATGGTGTGCCACGT+CGG + chr2_4:3143407-3143426 Msa0308740:CDS 55.0%
TTGAAACTCCGTCTCCGACG+TGG - chr2_4:3143424-3143443 None:intergenic 55.0%
ACGTCGGAGACGGAGTTTCA+AGG + chr2_4:3143423-3143442 Msa0308740:CDS 55.0%
TTGGATGCTGTGGGGCCAAT+TGG + chr2_4:3143461-3143480 Msa0308740:CDS 55.0%
TGGATGCTGTGGGGCCAATT+GGG + chr2_4:3143462-3143481 Msa0308740:CDS 55.0%
GTGGCTCCGGTGATTCAAAC+TGG + chr2_4:3143568-3143587 Msa0308740:CDS 55.0%
AAGACAACTCCGAGGACCAG+CGG + chr2_4:3143636-3143655 Msa0308740:CDS 55.0%
GCGGAAACGAGTAGCAGAGA+GGG + chr2_4:3143658-3143677 Msa0308740:CDS 55.0%
CGGAAACGAGTAGCAGAGAG+GGG + chr2_4:3143659-3143678 Msa0308740:CDS 55.0%
AAACGAGTAGCAGAGAGGGG+AGG + chr2_4:3143662-3143681 Msa0308740:CDS 55.0%
CGCATCAACGACACTCTCCA+CGG - chr2_4:3143700-3143719 None:intergenic 55.0%
!! CGTGGAGAGTGTCGTTGATG+CGG + chr2_4:3143698-3143717 Msa0308740:CDS 55.0%
GTCGTTGATGCGGTTGTTGG+AGG + chr2_4:3143708-3143727 Msa0308740:CDS 55.0%
GGAAAACGGTGATACGGTGG+CGG + chr2_4:3143735-3143754 Msa0308740:CDS 55.0%
! TGATACGGTGGCGGTTAAGG+CGG + chr2_4:3143744-3143763 Msa0308740:CDS 55.0%
!! GGAGGAGAAGGTTGATGCTG+TGG + chr2_4:3143765-3143784 Msa0308740:CDS 55.0%
!! GGAGAAGGTTGATGCTGTGG+CGG + chr2_4:3143768-3143787 Msa0308740:CDS 55.0%
!! GAGAAGGTTGATGCTGTGGC+GGG + chr2_4:3143769-3143788 Msa0308740:CDS 55.0%
GGTGCGGCGTTTATTCCATG+TGG + chr2_4:3143832-3143851 Msa0308740:intron 55.0%
!! GGGTTTGTTCTAGGGAGCTG+TGG + chr2_4:3143869-3143888 Msa0308740:intron 55.0%
!! GTGTTGATGGTGTGCCACGT+CGG + chr2_4:3143407-3143426 Msa0308740:CDS 55.0%
TTGAAACTCCGTCTCCGACG+TGG - chr2_4:3143424-3143443 None:intergenic 55.0%
ACGTCGGAGACGGAGTTTCA+AGG + chr2_4:3143423-3143442 Msa0308740:CDS 55.0%
TTGGATGCTGTGGGGCCAAT+TGG + chr2_4:3143461-3143480 Msa0308740:CDS 55.0%
TGGATGCTGTGGGGCCAATT+GGG + chr2_4:3143462-3143481 Msa0308740:CDS 55.0%
GTGGCTCCGGTGATTCAAAC+TGG + chr2_4:3143568-3143587 Msa0308740:CDS 55.0%
AAGACAACTCCGAGGACCAG+CGG + chr2_4:3143636-3143655 Msa0308740:CDS 55.0%
GCGGAAACGAGTAGCAGAGA+GGG + chr2_4:3143658-3143677 Msa0308740:CDS 55.0%
CGGAAACGAGTAGCAGAGAG+GGG + chr2_4:3143659-3143678 Msa0308740:CDS 55.0%
AAACGAGTAGCAGAGAGGGG+AGG + chr2_4:3143662-3143681 Msa0308740:CDS 55.0%
CGCATCAACGACACTCTCCA+CGG - chr2_4:3143700-3143719 None:intergenic 55.0%
!! CGTGGAGAGTGTCGTTGATG+CGG + chr2_4:3143698-3143717 Msa0308740:CDS 55.0%
GTCGTTGATGCGGTTGTTGG+AGG + chr2_4:3143708-3143727 Msa0308740:CDS 55.0%
GGAAAACGGTGATACGGTGG+CGG + chr2_4:3143735-3143754 Msa0308740:CDS 55.0%
! TGATACGGTGGCGGTTAAGG+CGG + chr2_4:3143744-3143763 Msa0308740:CDS 55.0%
!! GGAGGAGAAGGTTGATGCTG+TGG + chr2_4:3143765-3143784 Msa0308740:CDS 55.0%
!! GGAGAAGGTTGATGCTGTGG+CGG + chr2_4:3143768-3143787 Msa0308740:CDS 55.0%
!! GAGAAGGTTGATGCTGTGGC+GGG + chr2_4:3143769-3143788 Msa0308740:CDS 55.0%
GGTGCGGCGTTTATTCCATG+TGG + chr2_4:3143832-3143851 Msa0308740:intron 55.0%
!! GGGTTTGTTCTAGGGAGCTG+TGG + chr2_4:3143869-3143888 Msa0308740:intron 55.0%
ATGGTGTGCCACGTCGGAGA+CGG + chr2_4:3143413-3143432 Msa0308740:CDS 60.0%
GGATGCTGTGGGGCCAATTG+GGG + chr2_4:3143463-3143482 Msa0308740:CDS 60.0%
! GAATCTTGCTGCGGCGTTGG+CGG + chr2_4:3143609-3143628 Msa0308740:CDS 60.0%
GGCGGAAACGAGTAGCAGAG+AGG + chr2_4:3143657-3143676 Msa0308740:CDS 60.0%
! CGGTGATACGGTGGCGGTTA+AGG + chr2_4:3143741-3143760 Msa0308740:CDS 60.0%
ATGGTGTGCCACGTCGGAGA+CGG + chr2_4:3143413-3143432 Msa0308740:CDS 60.0%
GGATGCTGTGGGGCCAATTG+GGG + chr2_4:3143463-3143482 Msa0308740:CDS 60.0%
! GAATCTTGCTGCGGCGTTGG+CGG + chr2_4:3143609-3143628 Msa0308740:CDS 60.0%
GGCGGAAACGAGTAGCAGAG+AGG + chr2_4:3143657-3143676 Msa0308740:CDS 60.0%
! CGGTGATACGGTGGCGGTTA+AGG + chr2_4:3143741-3143760 Msa0308740:CDS 60.0%
GCGGCGGAAAGACAACTCCG+AGG + chr2_4:3143628-3143647 Msa0308740:CDS 65.0%
ACAACTCCGAGGACCAGCGG+CGG + chr2_4:3143639-3143658 Msa0308740:CDS 65.0%
TCGTTTCCGCCGCTGGTCCT+CGG - chr2_4:3143648-3143667 None:intergenic 65.0%
CTGCTACTCGTTTCCGCCGC+TGG - chr2_4:3143655-3143674 None:intergenic 65.0%
AGCAGAGAGGGGAGGATGCC+AGG + chr2_4:3143670-3143689 Msa0308740:CDS 65.0%
GCAGAGAGGGGAGGATGCCA+GGG + chr2_4:3143671-3143690 Msa0308740:CDS 65.0%
! TACGGTGGCGGTTAAGGCGG+AGG + chr2_4:3143747-3143766 Msa0308740:CDS 65.0%
GGCGGTTAAGGCGGAGGAGA+AGG + chr2_4:3143753-3143772 Msa0308740:CDS 65.0%
GCGGCGGAAAGACAACTCCG+AGG + chr2_4:3143628-3143647 Msa0308740:CDS 65.0%
ACAACTCCGAGGACCAGCGG+CGG + chr2_4:3143639-3143658 Msa0308740:CDS 65.0%
TCGTTTCCGCCGCTGGTCCT+CGG - chr2_4:3143648-3143667 None:intergenic 65.0%
CTGCTACTCGTTTCCGCCGC+TGG - chr2_4:3143655-3143674 None:intergenic 65.0%
AGCAGAGAGGGGAGGATGCC+AGG + chr2_4:3143670-3143689 Msa0308740:CDS 65.0%
GCAGAGAGGGGAGGATGCCA+GGG + chr2_4:3143671-3143690 Msa0308740:CDS 65.0%
! TACGGTGGCGGTTAAGGCGG+AGG + chr2_4:3143747-3143766 Msa0308740:CDS 65.0%
GGCGGTTAAGGCGGAGGAGA+AGG + chr2_4:3143753-3143772 Msa0308740:CDS 65.0%
!! TCTTGCTGCGGCGTTGGCGG+CGG + chr2_4:3143612-3143631 Msa0308740:CDS 70.0%
GACACTCTCCACGGCGTCCC+TGG - chr2_4:3143691-3143710 None:intergenic 70.0%
!! TCTTGCTGCGGCGTTGGCGG+CGG + chr2_4:3143612-3143631 Msa0308740:CDS 70.0%
GACACTCTCCACGGCGTCCC+TGG - chr2_4:3143691-3143710 None:intergenic 70.0%
GGAGGATGCCAGGGACGCCG+TGG + chr2_4:3143680-3143699 Msa0308740:CDS 75.0%
GGAGGATGCCAGGGACGCCG+TGG + chr2_4:3143680-3143699 Msa0308740:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 3143316 3144444 3143316 ID=Msa0308740;Name=Msa0308740
chr2_4 mRNA 3143316 3144444 3143316 ID=Msa0308740-mRNA-1;Parent=Msa0308740;Name=Msa0308740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.5|1|1|2|0|204
chr2_4 exon 3143316 3143832 3143316 ID=Msa0308740-mRNA-1:exon:886;Parent=Msa0308740-mRNA-1
chr2_4 exon 3144347 3144444 3144347 ID=Msa0308740-mRNA-1:exon:887;Parent=Msa0308740-mRNA-1
chr2_4 CDS 3143316 3143832 3143316 ID=Msa0308740-mRNA-1:cds;Parent=Msa0308740-mRNA-1
chr2_4 CDS 3144347 3144444 3144347 ID=Msa0308740-mRNA-1:cds;Parent=Msa0308740-mRNA-1
Gene Sequence

>Msa0308740

ATGAGTCAACTCGGTTTATTATTGCAAGAACCGGTTCAGTCTCAAACTCAGTCAACAACGATTCTCGGTTTGTTAAGGGAACAAATGGACGGTGTTGATGGTGTGCCACGTCGGAGACGGAGTTTCAAGGAACGGTTTGGATTTATTGGATGCTGTGGGGCCAATTGGGGATTCCGTTCTTCTTCTTCTGAATCACAACAGAATCAGCCACGGATTCTTGATACGGATCCGAGTGAAGATCCGAATATGTGTGTGGCTCCGGTGATTCAAACTGGTTCGAGTTCTTCGAGTATGAATCTTGCTGCGGCGTTGGCGGCGGAAAGACAACTCCGAGGACCAGCGGCGGAAACGAGTAGCAGAGAGGGGAGGATGCCAGGGACGCCGTGGAGAGTGTCGTTGATGCGGTTGTTGGAGGAAACGGAAAACGGTGATACGGTGGCGGTTAAGGCGGAGGAGAAGGTTGATGCTGTGGCGGGAAATGATTCAGTGTGTTGCGTTTGTATGGGGAGGAATAAAGCTAATGATGCTTCTTTGTTTATTGTCTTCAACACATACTCCCATCACAAAGTTGACCTTACCGACTTTTCTTTTGTCTTCCTATCAAACAATCATTAG

Protein sequence

>Msa0308740

MSQLGLLLQEPVQSQTQSTTILGLLREQMDGVDGVPRRRRSFKERFGFIGCCGANWGFRSSSSESQQNQPRILDTDPSEDPNMCVAPVIQTGSSSSSMNLAAALAAERQLRGPAAETSSREGRMPGTPWRVSLMRLLEETENGDTVAVKAEEKVDAVAGNDSVCCVCMGRNKANDASLFIVFNTYSHHKVDLTDFSFVFLSNNH*