AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258740 MtrunA17_Chr2g0321431 97.787 497 8 2 1 494 1 497 0.0 1001
Msa0258740 MtrunA17_Chr4g0026401 65.945 508 140 8 1 494 1 489 0.0 657
Msa0258740 MtrunA17_Chr8g0353501 62.847 288 97 3 189 466 179 466 6.06e-125 372
Msa0258740 MtrunA17_Chr1g0174701 44.776 469 174 8 36 466 85 506 3.86e-124 372
Msa0258740 MtrunA17_Chr7g0256211 59.603 302 111 3 175 466 152 452 1.82e-122 365
Msa0258740 MtrunA17_Chr7g0258321 43.067 476 185 12 21 466 44 463 4.27e-120 360
Msa0258740 MtrunA17_Chr3g0124601 54.795 292 120 4 184 466 73 361 2.58e-109 328
Msa0258740 MtrunA17_Chr5g0422771 54.167 288 122 2 189 466 177 464 8.44e-104 318
Msa0258740 MtrunA17_Chr1g0210151 47.573 309 147 3 169 466 36 340 1.36e-99 303
Msa0258740 MtrunA17_Chr5g0424861 49.679 312 145 5 163 463 37 347 1.15e-91 283
Msa0258740 MtrunA17_Chr8g0382861 51.228 285 127 4 191 466 75 356 1.88e-90 280
Msa0258740 MtrunA17_Chr3g0115371 50.865 289 133 3 191 470 65 353 8.46e-90 278
Msa0258740 MtrunA17_Chr5g0424851 45.249 221 118 1 246 463 2 222 1.87e-57 196
Msa0258740 MtrunA17_Chr5g0424851 42.157 204 116 1 253 454 223 426 2.96e-50 177
Msa0258740 MtrunA17_Chr3g0093451 45.699 186 86 4 169 342 27 209 2.39e-54 181
Msa0258740 MtrunA17_Chr1g0196951 33.155 187 104 5 267 448 59 229 9.13e-23 97.1
Msa0258740 MtrunA17_Chr8g0384821 27.615 239 124 6 258 453 15 247 2.51e-16 79.3
Msa0258740 MtrunA17_Chr7g0242651 24.885 217 143 3 256 456 7 219 1.20e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258740 AT1G08320.1 59.761 502 173 9 1 494 1 481 0.0 583
Msa0258740 AT1G08320.4 59.761 502 173 9 1 494 1 481 0.0 583
Msa0258740 AT1G08320.3 59.761 502 173 9 1 494 1 481 0.0 583
Msa0258740 AT1G08320.2 68.622 341 106 1 154 494 18 357 1.61e-176 500
Msa0258740 AT1G08320.5 68.622 341 106 1 154 494 18 357 1.61e-176 500
Msa0258740 AT5G06839.3 46.072 471 182 11 35 467 23 459 3.59e-121 363
Msa0258740 AT5G06839.1 58.228 316 108 4 176 467 101 416 6.66e-118 353
Msa0258740 AT3G12250.6 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0258740 AT3G12250.2 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0258740 AT3G12250.7 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0258740 AT3G12250.1 55.183 328 128 4 151 466 10 330 2.78e-117 348
Msa0258740 AT5G06839.2 58.044 317 108 5 176 467 101 417 1.87e-116 349
Msa0258740 AT3G12250.5 58.086 303 109 4 179 466 4 303 4.76e-116 344
Msa0258740 AT3G12250.3 58.086 303 109 4 179 466 25 324 7.01e-116 344
Msa0258740 AT5G06950.2 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0258740 AT5G06950.4 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0258740 AT5G06950.1 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0258740 AT5G06950.5 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0258740 AT5G06950.3 57.333 300 116 3 179 466 31 330 1.19e-115 344
Msa0258740 AT3G12250.4 58.000 300 114 3 179 466 56 355 1.35e-114 342
Msa0258740 AT5G06960.2 59.028 288 109 2 188 466 43 330 2.94e-113 338
Msa0258740 AT5G06960.1 59.028 288 109 2 188 466 43 330 2.94e-113 338
Msa0258740 AT5G06960.3 59.028 288 109 2 188 466 23 310 7.30e-113 336
Msa0258740 AT1G22070.1 56.055 289 118 3 188 467 95 383 8.10e-103 313
Msa0258740 AT1G77920.1 49.112 338 141 5 132 466 57 366 1.18e-102 312
Msa0258740 AT5G10030.5 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0258740 AT5G10030.3 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0258740 AT5G10030.1 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0258740 AT5G10030.4 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0258740 AT5G10030.2 53.220 295 125 4 181 466 72 362 1.13e-100 307
Msa0258740 AT1G68640.1 55.102 294 117 5 186 466 161 452 1.98e-99 306
Msa0258740 AT5G65210.6 51.536 293 133 3 181 466 6 296 7.81e-96 292
Msa0258740 AT5G65210.5 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0258740 AT5G65210.7 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0258740 AT5G65210.3 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0258740 AT5G65210.1 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0258740 AT5G65210.2 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0258740 AT5G65210.4 51.536 293 133 3 181 466 76 366 9.79e-96 294
Msa0258740 AT1G58330.1 26.244 221 148 4 251 456 3 223 2.89e-14 72.4

Find 106 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGGAAATGTTCCCTTCT+TGG 0.211576 2_2:-55359673 Msa0258740:CDS
AATCAAGTTCTCCTATTCTT+TGG 0.233116 2_2:+55360367 None:intergenic
GAAAATGTCAGTTGTTATCT+AGG 0.286466 2_2:-55352967 Msa0258740:three_prime_UTR
TTAGAGCTCTTAGTTCTCTT+TGG 0.292211 2_2:-55353450 Msa0258740:CDS
AAGCTGAACGTTGCTTCCTT+TGG 0.305878 2_2:-55355908 Msa0258740:CDS
TCAACTCATCATGTCCCTTA+TGG 0.310663 2_2:-55360327 Msa0258740:CDS
CAGCTAGTGGCTCCAATTGC+TGG 0.313572 2_2:+55354726 None:intergenic
TAGAGCTCTTAGTTCTCTTT+GGG 0.313649 2_2:-55353449 Msa0258740:CDS
GAAAAGTCGTCTAAGGAAAA+AGG 0.321473 2_2:-55357576 Msa0258740:intron
ATCAGATCATAATAATAATA+TGG 0.322421 2_2:-55359300 Msa0258740:CDS
TACATTTACAATAAACATAA+AGG 0.322924 2_2:+55352900 None:intergenic
ACTAGCTGAGCAGCAAATAA+TGG 0.328572 2_2:-55354711 Msa0258740:CDS
AATTGAAAAGGGTATGTTCA+TGG 0.336673 2_2:-55357291 Msa0258740:intron
GCAATGTTTGACATGGAATA+TGG 0.352960 2_2:-55356119 Msa0258740:CDS
TCTCTTGTTGACACCATTGC+TGG 0.353849 2_2:-55354614 Msa0258740:CDS
CTAGCTGAGCAGCAAATAAT+GGG 0.360569 2_2:-55354710 Msa0258740:CDS
TTTGCATATCCGTGGTTGTT+TGG 0.361993 2_2:+55353073 None:intergenic
TAGATTAAAGCTTACACAAT+TGG 0.368639 2_2:-55357429 Msa0258740:CDS
AAGGGTGATTCTTGCTCAAA+AGG 0.370182 2_2:+55359347 None:intergenic
TTACTACTGTTGAGGTTTGA+TGG 0.373913 2_2:+55359639 None:intergenic
CTTGTTATTGGAGAATACTA+TGG 0.375599 2_2:-55353478 Msa0258740:CDS
GCTGGAGGACCCCTTGTTGA+TGG 0.376451 2_2:-55354596 Msa0258740:CDS
TTCCAGTGTAGCAGCAGGTC+TGG 0.387739 2_2:+55359688 None:intergenic
GTCCTACAAGTGGTTCTTGT+TGG 0.388033 2_2:-55352999 Msa0258740:three_prime_UTR
TTTGTTAGGAATGAAGAATC+TGG 0.392918 2_2:-55360170 Msa0258740:intron
TATTTCTCTTTAGCTAAAGT+TGG 0.401155 2_2:+55352846 None:intergenic
TGAGACGTTTAGCACAAAAC+AGG 0.401597 2_2:-55357610 Msa0258740:CDS
ATGGATTGGAGTGGAGGTGT+TGG 0.411382 2_2:-55357272 Msa0258740:CDS
GTGTGAGTAATCGACATAAT+TGG 0.411816 2_2:+55353524 None:intergenic
TCCTACAAGTGGTTCTTGTT+GGG 0.416938 2_2:-55352998 Msa0258740:three_prime_UTR
CGTTGCTTCCTTTGGATTGG+TGG 0.418885 2_2:-55355900 Msa0258740:CDS
TTCTTAACTCCGTTAATAAA+CGG 0.419059 2_2:+55356075 None:intergenic
CTGCAAGGAAAAGTCGTCTA+AGG 0.422741 2_2:-55357583 Msa0258740:CDS
GGCAAGCTTGCCAATCTTGA+AGG 0.422961 2_2:-55354548 Msa0258740:CDS
AGAAGACAACCGTTTATTAA+CGG 0.423518 2_2:-55356084 Msa0258740:CDS
TCCCTTATGGAATTCATCAT+AGG 0.425244 2_2:-55360314 Msa0258740:CDS
ATCCAGACCTGCTGCTACAC+TGG 0.426810 2_2:-55359690 Msa0258740:CDS
TCAGATGTTGATCCAGCAAT+TGG 0.431974 2_2:-55354738 Msa0258740:intron
CAGGAAGGTGGTAACAAATC+AGG 0.441251 2_2:-55359413 Msa0258740:CDS
TAATACATTAAACTTGATGA+AGG 0.448293 2_2:+55360282 None:intergenic
GAACGTTGCTTCCTTTGGAT+TGG 0.451843 2_2:-55355903 Msa0258740:CDS
GACGTGTTTCATCTTATCAA+TGG 0.455217 2_2:-55355945 Msa0258740:CDS
ATCCTATGATGAATTCCATA+AGG 0.459315 2_2:+55360312 None:intergenic
CAGCAAATAATGGGGATGTA+TGG 0.463856 2_2:-55354701 Msa0258740:CDS
CAACAAATGGTTGTTGCCAT+AGG 0.467436 2_2:-55354569 Msa0258740:CDS
ACAGTTTATGAAAATTGAAA+AGG 0.467559 2_2:-55352818 Msa0258740:three_prime_UTR
CAACAAGAGACTGTTGCAAC+TGG 0.468138 2_2:+55354627 None:intergenic
TAGACCCTCTGAAATTATCA+TGG 0.469132 2_2:-55355874 Msa0258740:intron
AAGATTGGCAAGCTTGCCTA+TGG 0.469646 2_2:+55354553 None:intergenic
ACGAAGAAAACCTTCAAGAT+TGG 0.470177 2_2:+55354538 None:intergenic
AAAAGGGTATGTTCATGGAT+TGG 0.472621 2_2:-55357286 Msa0258740:intron
TGGAATCTCATTGGCCAAGA+AGG 0.473970 2_2:+55359659 None:intergenic
TCCTATGATGAATTCCATAA+GGG 0.488783 2_2:+55360313 None:intergenic
AGGGTGATTCTTGCTCAAAA+GGG 0.490521 2_2:+55359348 None:intergenic
ATGTTCATGGATTGGAGTGG+AGG 0.491384 2_2:-55357278 Msa0258740:CDS
TGTTGATGGTGTTCAACAAA+TGG 0.493901 2_2:-55354582 Msa0258740:CDS
GAGGTTTGATGGAATCTCAT+TGG 0.494784 2_2:+55359650 None:intergenic
GCCCAACAAGAACCACTTGT+AGG 0.495907 2_2:+55352997 None:intergenic
CATTCAAAGAGCACGCTCTC+AGG 0.496954 2_2:-55357399 Msa0258740:intron
AACAACCACGGATATGCAAA+TGG 0.498862 2_2:-55353070 Msa0258740:CDS
GATTGGAGTGGAGGTGTTGG+AGG 0.501212 2_2:-55357269 Msa0258740:CDS
ATCAGCAGCAGCCAAAGAAA+AGG 0.524596 2_2:-55359183 Msa0258740:intron
ATTATTTGCTGCTCAGCTAG+TGG 0.524704 2_2:+55354713 None:intergenic
ATAAACACCTTTGCATCAAG+TGG 0.529769 2_2:+55357723 None:intergenic
ACTAACCATGATAATTTCAG+AGG 0.533906 2_2:+55355869 None:intergenic
CACAAAACAGGGAGGCTGCA+AGG 0.543811 2_2:-55357598 Msa0258740:CDS
AACATTTCCAGTGTAGCAGC+AGG 0.549096 2_2:+55359683 None:intergenic
GTTGGAGGAAATATAAGCTC+TGG 0.554357 2_2:-55357254 Msa0258740:intron
CTTGTTGACACCATTGCTGG+AGG 0.554730 2_2:-55354611 Msa0258740:CDS
ATTACTCACACTTCGTCAAG+CGG 0.557736 2_2:-55353512 Msa0258740:CDS
AATTGAAGGCTGATAACTTG+AGG 0.558228 2_2:-55353561 Msa0258740:intron
TTATTAACGGAGTTAAGAAA+CGG 0.562286 2_2:-55356071 Msa0258740:CDS
GATCAAATATTTAGACTCAA+AGG 0.563784 2_2:-55355984 Msa0258740:CDS
GGAATCTCATTGGCCAAGAA+GGG 0.563800 2_2:+55359660 None:intergenic
AGATAAGCCACTTGATGCAA+AGG 0.567470 2_2:-55357730 Msa0258740:intron
GTCTAAAACCACCAATCCAA+AGG 0.567699 2_2:+55355892 None:intergenic
AGAGAGTATTACTACTGTTG+AGG 0.572603 2_2:+55359631 None:intergenic
TTTGTGAAATGATTCTGAGA+AGG 0.574512 2_2:+55353042 None:intergenic
GCAGAGGAAGCTCTCTCACA+AGG 0.575222 2_2:-55354656 Msa0258740:CDS
AACAAGGGGTCCTCCAGCAA+TGG 0.575749 2_2:+55354601 None:intergenic
TTGACATGGAATATGGAAGA+TGG 0.583833 2_2:-55356112 Msa0258740:CDS
TTGAACCATTTGCATATCCG+TGG 0.584485 2_2:+55353065 None:intergenic
TTTGTTGAACACCATCAACA+AGG 0.585380 2_2:+55354585 None:intergenic
TGCATGGCGAGCCAAAGAAT+AGG 0.589611 2_2:-55360378 Msa0258740:CDS
AGATAATGAAATGAGAGTAA+TGG 0.594040 2_2:-55356030 Msa0258740:CDS
TATTTGGAAATACAGGAAGG+TGG 0.595349 2_2:-55359425 Msa0258740:intron
TATTTGATTCTGTGATGAAG+AGG 0.598778 2_2:+55359205 None:intergenic
GAAATGAGAGTAATGGTGGA+TGG 0.599016 2_2:-55356023 Msa0258740:CDS
ATATATTTAACTTACTCTCG+TGG 0.607255 2_2:+55353418 None:intergenic
TTCATCTTATCAATGGCATG+TGG 0.610713 2_2:-55355938 Msa0258740:CDS
TAATGAAATGAGAGTAATGG+TGG 0.614982 2_2:-55356027 Msa0258740:CDS
GCATTCTTCGCAGCAAGCAG+AGG 0.615108 2_2:-55354672 Msa0258740:CDS
TTGTTGAACACCATCAACAA+GGG 0.615909 2_2:+55354586 None:intergenic
GTTAAGAAACGGATTGCAAG+CGG 0.631491 2_2:-55356060 Msa0258740:CDS
ATGTATTAAAGTCCTACAAG+TGG 0.637890 2_2:-55353009 Msa0258740:three_prime_UTR
GAGACGTTTAGCACAAAACA+GGG 0.648005 2_2:-55357609 Msa0258740:CDS
AGGAGGTGCAATGTTTGACA+TGG 0.651643 2_2:-55356126 Msa0258740:CDS
TGTTGAACACCATCAACAAG+GGG 0.659117 2_2:+55354587 None:intergenic
CTAACCATGATAATTTCAGA+GGG 0.659541 2_2:+55355870 None:intergenic
TGAGCTTTATGTGCATGATG+AGG 0.680307 2_2:-55352874 Msa0258740:three_prime_UTR
TAACTCATGCCAAACAACCA+CGG 0.685861 2_2:-55353082 Msa0258740:CDS
GAAGGTGGTAACAAATCAGG+AGG 0.695839 2_2:-55359410 Msa0258740:CDS
TAATGGGGATGTATGGACTG+AGG 0.696038 2_2:-55354694 Msa0258740:CDS
GGTATGTTCATGGATTGGAG+TGG 0.698181 2_2:-55357281 Msa0258740:CDS
TAGCTGAGCAGCAAATAATG+GGG 0.701228 2_2:-55354709 Msa0258740:CDS
ACGTTTAGCACAAAACAGGG+AGG 0.779708 2_2:-55357606 Msa0258740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTCAATAAATTATAAATA+AGG - chr2_2:55352931-55352950 Msa0258740:three_prime_UTR 10.0%
!! AAATATAAAGTTAATAGATT+AGG - chr2_2:55353362-55353381 Msa0258740:intron 10.0%
!! GTATAGTTAAATAATTTAAT+CGG + chr2_2:55353733-55353752 None:intergenic 10.0%
!! AAAACAAACAAAAAAAAAAT+TGG + chr2_2:55354331-55354350 None:intergenic 10.0%
!!! ATTTTAACTTTTAATTGAAA+AGG - chr2_2:55355885-55355904 Msa0258740:CDS 10.0%
!!! TTTTAACTTTTAATTGAAAA+GGG - chr2_2:55355886-55355905 Msa0258740:CDS 10.0%
!!! GAGTTTATATATTTTAAAAA+AGG + chr2_2:55356241-55356260 None:intergenic 10.0%
!! TTATTATTACTAAAAAAAAG+TGG + chr2_2:55356725-55356744 None:intergenic 10.0%
!! TTATTGTAATAATAAATTGT+AGG - chr2_2:55357042-55357061 Msa0258740:intron 10.0%
!! ATTATACCAAATTAATTATA+TGG + chr2_2:55357365-55357384 None:intergenic 10.0%
!! TTAATAAAGGAATTATATTA+TGG - chr2_2:55357411-55357430 Msa0258740:CDS 10.0%
!! TAATAAAGGAATTATATTAT+GGG - chr2_2:55357412-55357431 Msa0258740:CDS 10.0%
!! ATTATATATTTACATTTAGT+TGG - chr2_2:55359798-55359817 Msa0258740:intron 10.0%
!! TAATTAAAGATAAAGAAAAA+TGG + chr2_2:55360006-55360025 None:intergenic 10.0%
!! TTGAATATAACAAAATAAAT+TGG + chr2_2:55360064-55360083 None:intergenic 10.0%
!!! AATACCTTTTACAATTATTT+TGG - chr2_2:55353399-55353418 Msa0258740:intron 15.0%
!! TTTACCAAAATAATTGTAAA+AGG + chr2_2:55353406-55353425 None:intergenic 15.0%
!!! AAATTTAAAGCCTTTTATTT+TGG - chr2_2:55353426-55353445 Msa0258740:intron 15.0%
!! TAAGCATAATTAAAATAGAT+TGG + chr2_2:55353591-55353610 None:intergenic 15.0%
!! ATCAGATCATAATAATAATA+TGG - chr2_2:55353888-55353907 Msa0258740:intron 15.0%
!!! TTTTTTAAAAAACAAAGGTA+CGG + chr2_2:55354769-55354788 None:intergenic 15.0%
!!! TTTTTTTTGTTGTAGAAAAA+AGG - chr2_2:55355420-55355439 Msa0258740:intron 15.0%
!!! AGTTTAGTTTACATTTTTTT+GGG - chr2_2:55355959-55355978 Msa0258740:CDS 15.0%
!! AATAAATTACTAGTAAATGA+TGG + chr2_2:55356035-55356054 None:intergenic 15.0%
!! AGTTATTTATTCATAGATTT+CGG + chr2_2:55356161-55356180 None:intergenic 15.0%
!!! ACTTTTGTAAGAAAAAAAAA+AGG - chr2_2:55356749-55356768 Msa0258740:intron 15.0%
!! TAATCACAAGAAATTAAATT+TGG - chr2_2:55356868-55356887 Msa0258740:intron 15.0%
!!! TTTACATTTTGATATTATGT+CGG + chr2_2:55356970-55356989 None:intergenic 15.0%
!! TTCATTCCATATAATTAATT+TGG - chr2_2:55357356-55357375 Msa0258740:intron 15.0%
!! ACAAAATAAATTGTAACAAA+CGG - chr2_2:55357739-55357758 Msa0258740:CDS 15.0%
!!! TGTGAGTTTTTTTTTTTTTT+TGG - chr2_2:55358187-55358206 Msa0258740:intron 15.0%
!!! GTTGAAATACATTTTAATTA+TGG - chr2_2:55359846-55359865 Msa0258740:intron 15.0%
!!! TTATTTTGTTATATTCAAAC+AGG - chr2_2:55360066-55360085 Msa0258740:intron 15.0%
!! TACATTTACAATAAACATAA+AGG + chr2_2:55360291-55360310 None:intergenic 15.0%
!! TAATACATTAAACTTGATGA+AGG + chr2_2:55352909-55352928 None:intergenic 20.0%
!!! TAGTACTGTTTTATTCATTT+TGG - chr2_2:55352957-55352976 Msa0258740:three_prime_UTR 20.0%
!!! AATGTTTTTGTTTGTTTGTT+AGG - chr2_2:55353004-55353023 Msa0258740:three_prime_UTR 20.0%
!!! GCATTATTTTAATTGAATCA+AGG + chr2_2:55353695-55353714 None:intergenic 20.0%
!!! CTATACTAATGATTTGTATT+TGG - chr2_2:55353747-55353766 Msa0258740:intron 20.0%
!!! TTTACTATTAACCTTTTCTT+TGG + chr2_2:55354019-55354038 None:intergenic 20.0%
!! AAAAAAAATTGGTACATCAT+GGG + chr2_2:55354320-55354339 None:intergenic 20.0%
!! AAAAAAAAATTGGTACATCA+TGG + chr2_2:55354321-55354340 None:intergenic 20.0%
!!! TTTTGTTTGTTTTTAAACCT+TGG - chr2_2:55354338-55354357 Msa0258740:intron 20.0%
!! TATTGCAATATATCATACAA+GGG - chr2_2:55354537-55354556 Msa0258740:CDS 20.0%
!!! ATTTAAAATAACATAGCATG+AGG + chr2_2:55354721-55354740 None:intergenic 20.0%
!!! TTTTTAAAAAACAAAGGTAC+GGG + chr2_2:55354768-55354787 None:intergenic 20.0%
!!! CGACATTTTTTAAAAAACAA+AGG + chr2_2:55354774-55354793 None:intergenic 20.0%
!! GTATCTATATCTATATGTAT+AGG + chr2_2:55355647-55355666 None:intergenic 20.0%
!!! GAGTTTAGTTTACATTTTTT+TGG - chr2_2:55355958-55355977 Msa0258740:CDS 20.0%
!!! GTTTAGTTTACATTTTTTTG+GGG - chr2_2:55355960-55355979 Msa0258740:CDS 20.0%
!!! ATACTTTTGAACATAAACAT+TGG + chr2_2:55356216-55356235 None:intergenic 20.0%
!! TAGTTTATACATGATAGAAA+AGG + chr2_2:55356282-55356301 None:intergenic 20.0%
!!! CATTGTTTCGAATTATTTTT+TGG - chr2_2:55356509-55356528 Msa0258740:intron 20.0%
!! AAAAGCCAAAGTATATATAA+AGG + chr2_2:55356666-55356685 None:intergenic 20.0%
!! TTTGTAAGAAAAAAAAAAGG+AGG - chr2_2:55356752-55356771 Msa0258740:intron 20.0%
!!! AAAAAATGCACTTTAAGAAA+AGG - chr2_2:55356810-55356829 Msa0258740:intron 20.0%
!! TTGTAATAATAAATTGTAGG+AGG - chr2_2:55357045-55357064 Msa0258740:intron 20.0%
!! AATGTGAAACTTCTTAATAA+AGG - chr2_2:55357398-55357417 Msa0258740:intron 20.0%
!!! TTTTTAACAACTTGTAACAA+AGG - chr2_2:55357646-55357665 Msa0258740:intron 20.0%
!! CAAAATAAATTGTAACAAAC+GGG - chr2_2:55357740-55357759 Msa0258740:CDS 20.0%
!!! AAAAGAGTGTGTATTATAAA+GGG + chr2_2:55357985-55358004 None:intergenic 20.0%
!!! TAAAAGAGTGTGTATTATAA+AGG + chr2_2:55357986-55358005 None:intergenic 20.0%
!! TTAATGAATGAAATCAATGT+TGG - chr2_2:55358007-55358026 Msa0258740:intron 20.0%
!!! ATATGCTAATGTTGATAATT+TGG - chr2_2:55358422-55358441 Msa0258740:intron 20.0%
!! ATAGATTACAAGGAAATAAT+GGG + chr2_2:55358843-55358862 None:intergenic 20.0%
!!! TTGAATGAAACATTTTAAGA+TGG + chr2_2:55359257-55359276 None:intergenic 20.0%
!! AAAATGTTTCATTCAAAAGT+TGG - chr2_2:55359261-55359280 Msa0258740:CDS 20.0%
!!! AGTGATTATGTTAGTTTTTA+GGG + chr2_2:55359420-55359439 None:intergenic 20.0%
!!! TAGTGATTATGTTAGTTTTT+AGG + chr2_2:55359421-55359440 None:intergenic 20.0%
!!! CATTCATATTTTTCAATTGA+AGG - chr2_2:55359613-55359632 Msa0258740:intron 20.0%
!! ACAGTTTATGAAAATTGAAA+AGG - chr2_2:55360370-55360389 Msa0258740:CDS 20.0%
!!! AAGAATCTGGTTTTGATTTT+GGG - chr2_2:55353031-55353050 Msa0258740:exon 25.0%
! GAAAGAAAGAAAAAAAGCAA+TGG - chr2_2:55353197-55353216 Msa0258740:intron 25.0%
!! AATCATTATGGTATTGGAAA+TGG + chr2_2:55353252-55353271 None:intergenic 25.0%
! TCAGTAAAAATCATGCAAAA+GGG + chr2_2:55353328-55353347 None:intergenic 25.0%
! ACTTTATATTTCAGCAGTTA+TGG + chr2_2:55353353-55353372 None:intergenic 25.0%
!! TGATTTGTATTTGGAAATAC+AGG - chr2_2:55353756-55353775 Msa0258740:intron 25.0%
!!! GAAGATGCTTTTTTACTTAA+GGG + chr2_2:55353862-55353881 None:intergenic 25.0%
!!! AGAAGATGCTTTTTTACTTA+AGG + chr2_2:55353863-55353882 None:intergenic 25.0%
!! AGTTAAAGTGTTAAATCACT+TGG - chr2_2:55354058-55354077 Msa0258740:intron 25.0%
! CAAAATTTCCCTTAGTTTAT+GGG + chr2_2:55354100-55354119 None:intergenic 25.0%
! TTGAATTTGTACTATCTTCT+TGG - chr2_2:55354140-55354159 Msa0258740:intron 25.0%
!!! TTGATTTTCTGAAATCTGTT+GGG + chr2_2:55354187-55354206 None:intergenic 25.0%
!!! TTTGATTTTCTGAAATCTGT+TGG + chr2_2:55354188-55354207 None:intergenic 25.0%
!! CATTTTCTCAAGGAAAAAAA+CGG + chr2_2:55354406-55354425 None:intergenic 25.0%
! CTATTGCAATATATCATACA+AGG - chr2_2:55354536-55354555 Msa0258740:CDS 25.0%
!!! AGATATTCATTTGTCACTTT+TGG + chr2_2:55354623-55354642 None:intergenic 25.0%
! AAAAGCAATATAATTTCTGC+CGG - chr2_2:55354679-55354698 Msa0258740:CDS 25.0%
! AAGAAACAGTTCACAAAAAA+TGG - chr2_2:55355079-55355098 Msa0258740:intron 25.0%
!! TTTCAAGTGTAGAACAAAAA+TGG + chr2_2:55355344-55355363 None:intergenic 25.0%
! ATGTTCATGTTTATATGCTA+AGG - chr2_2:55355530-55355549 Msa0258740:intron 25.0%
!!! ACTCATTGCATTTTTTTTAC+AGG - chr2_2:55355711-55355730 Msa0258740:intron 25.0%
! TAGATTAAAGCTTACACAAT+TGG - chr2_2:55355759-55355778 Msa0258740:intron 25.0%
! AAAGTCAAAACTTGATCTTA+TGG - chr2_2:55356097-55356116 Msa0258740:CDS 25.0%
! AAGTCAAAACTTGATCTTAT+GGG - chr2_2:55356098-55356117 Msa0258740:CDS 25.0%
!! TATATAAAAGCTGCTTTCAA+AGG - chr2_2:55356302-55356321 Msa0258740:intron 25.0%
!! ATATAAAAGCTGCTTTCAAA+GGG - chr2_2:55356303-55356322 Msa0258740:intron 25.0%
! AGTCTCCTTTATATATACTT+TGG - chr2_2:55356658-55356677 Msa0258740:intron 25.0%
! TTTCTTGTGATTAAACAAAG+TGG + chr2_2:55356861-55356880 None:intergenic 25.0%
! CATATTAATTGTGATGAGTT+TGG + chr2_2:55357016-55357035 None:intergenic 25.0%
! TTCTTAACTCCGTTAATAAA+CGG + chr2_2:55357116-55357135 None:intergenic 25.0%
! TTATTAACGGAGTTAAGAAA+CGG - chr2_2:55357117-55357136 Msa0258740:intron 25.0%
! AGATAATGAAATGAGAGTAA+TGG - chr2_2:55357158-55357177 Msa0258740:intron 25.0%
! GATCAAATATTTAGACTCAA+AGG - chr2_2:55357204-55357223 Msa0258740:intron 25.0%
! AACTATTTCAAATGAGAAGT+TGG + chr2_2:55357601-55357620 None:intergenic 25.0%
!! AAAGAGTGTGTATTATAAAG+GGG + chr2_2:55357984-55358003 None:intergenic 25.0%
! TAAAAAAGTGAGTGTCATAT+TGG - chr2_2:55358071-55358090 Msa0258740:intron 25.0%
! AAAAAAGTGAGTGTCATATT+GGG - chr2_2:55358072-55358091 Msa0258740:intron 25.0%
! GCAATAATTTACTGTTACAT+TGG + chr2_2:55358353-55358372 None:intergenic 25.0%
! AGCAATATTCAAACTATATG+TGG + chr2_2:55358777-55358796 None:intergenic 25.0%
!!! CTTTTTTGCAATTTGAATCA+AGG - chr2_2:55358799-55358818 Msa0258740:intron 25.0%
! CATAGATTACAAGGAAATAA+TGG + chr2_2:55358844-55358863 None:intergenic 25.0%
! TTATTTCCTTGTAATCTATG+TGG - chr2_2:55358844-55358863 Msa0258740:intron 25.0%
! CAGATAATAAAATGTTAGGT+AGG + chr2_2:55358910-55358929 None:intergenic 25.0%
!! CTACCTAACATTTTATTATC+TGG - chr2_2:55358908-55358927 Msa0258740:intron 25.0%
! GTACCAGATAATAAAATGTT+AGG + chr2_2:55358914-55358933 None:intergenic 25.0%
! TATGAGATTAGCAACATAAT+TGG + chr2_2:55359146-55359165 None:intergenic 25.0%
!! TTTCAACTATTTTCCCTTAT+TGG - chr2_2:55359550-55359569 Msa0258740:intron 25.0%
!! ATATATTTAACTTACTCTCG+TGG + chr2_2:55359773-55359792 None:intergenic 25.0%
! TTAATTTCATGCATGTTTGT+AGG - chr2_2:55359824-55359843 Msa0258740:intron 25.0%
! AGCAAAATTATAACACCATT+TGG + chr2_2:55359948-55359967 None:intergenic 25.0%
!!! TACTTTTTAATCATCTGTTC+TGG - chr2_2:55360263-55360282 Msa0258740:intron 25.0%
! TATTTCTCTTTAGCTAAAGT+TGG + chr2_2:55360345-55360364 None:intergenic 25.0%
AATCAAGTTCTCCTATTCTT+TGG + chr2_2:55352824-55352843 None:intergenic 30.0%
TCCTATGATGAATTCCATAA+GGG + chr2_2:55352878-55352897 None:intergenic 30.0%
ATCCTATGATGAATTCCATA+AGG + chr2_2:55352879-55352898 None:intergenic 30.0%
TTTGTTAGGAATGAAGAATC+TGG - chr2_2:55353018-55353037 Msa0258740:exon 30.0%
!!! GAAGAATCTGGTTTTGATTT+TGG - chr2_2:55353030-55353049 Msa0258740:exon 30.0%
!!! AGAATCTGGTTTTGATTTTG+GGG - chr2_2:55353032-55353051 Msa0258740:exon 30.0%
! TCTAAGGTCAGAAAAAAAAG+TGG + chr2_2:55353145-55353164 None:intergenic 30.0%
! CAACTCTTTCTAAAAGTAGA+GGG - chr2_2:55353175-55353194 Msa0258740:intron 30.0%
GTCAGTAAAAATCATGCAAA+AGG + chr2_2:55353329-55353348 None:intergenic 30.0%
AGAGGATCAACCAAAATAAA+AGG + chr2_2:55353439-55353458 None:intergenic 30.0%
CATCAAAGAAAAAATCTGAG+AGG + chr2_2:55353457-55353476 None:intergenic 30.0%
TTGTATTTGGAAATACAGGA+AGG - chr2_2:55353760-55353779 Msa0258740:intron 30.0%
TATTTGATTCTGTGATGAAG+AGG + chr2_2:55353986-55354005 None:intergenic 30.0%
TTTCCATATCCCATAAACTA+AGG - chr2_2:55354088-55354107 Msa0258740:intron 30.0%
TTCCATATCCCATAAACTAA+GGG - chr2_2:55354089-55354108 Msa0258740:intron 30.0%
CCAAAATTTCCCTTAGTTTA+TGG + chr2_2:55354101-55354120 None:intergenic 30.0%
! CCATAAACTAAGGGAAATTT+TGG - chr2_2:55354098-55354117 Msa0258740:intron 30.0%
TTTAAACCTTGGTACAGTTA+CGG - chr2_2:55354349-55354368 Msa0258740:intron 30.0%
TCATGAGAATTATGCAAGAA+AGG - chr2_2:55354475-55354494 Msa0258740:intron 30.0%
GAAAATGAAATAATGCAACC+TGG - chr2_2:55354505-55354524 Msa0258740:intron 30.0%
ATGTGATATGGATAGCAAAA+TGG + chr2_2:55355116-55355135 None:intergenic 30.0%
CAATCATCTTCAATGTGATA+TGG + chr2_2:55355128-55355147 None:intergenic 30.0%
ATTGCATTCCTACTGAAAAA+TGG - chr2_2:55355144-55355163 Msa0258740:intron 30.0%
! TCATGTCATCTTTTTGTTCT+TGG - chr2_2:55355217-55355236 Msa0258740:intron 30.0%
ATGGTTAAACAAATGAGTGA+GGG + chr2_2:55355325-55355344 None:intergenic 30.0%
AATGGTTAAACAAATGAGTG+AGG + chr2_2:55355326-55355345 None:intergenic 30.0%
! AATTGAAAAGGGTATGTTCA+TGG - chr2_2:55355897-55355916 Msa0258740:CDS 30.0%
CTGCAAAAGAAATATTCAAG+TGG + chr2_2:55356331-55356350 None:intergenic 30.0%
! TGAATATTTCTTTTGCAGCT+TGG - chr2_2:55356333-55356352 Msa0258740:intron 30.0%
! TTTTGCAGCTTGGATTAATT+TGG - chr2_2:55356343-55356362 Msa0258740:intron 30.0%
!! TAATTTGGCTCTCTATCTTT+AGG - chr2_2:55356358-55356377 Msa0258740:intron 30.0%
!! AATTTGGCTCTCTATCTTTA+GGG - chr2_2:55356359-55356378 Msa0258740:intron 30.0%
AAAAAGCTAGTGCAATAATG+TGG + chr2_2:55356905-55356924 None:intergenic 30.0%
!!! GCACTAGCTTTTTTTTTTGA+CGG - chr2_2:55356912-55356931 Msa0258740:intron 30.0%
!!! CACTAGCTTTTTTTTTTGAC+GGG - chr2_2:55356913-55356932 Msa0258740:intron 30.0%
!!! ACTAGCTTTTTTTTTTGACG+GGG - chr2_2:55356914-55356933 Msa0258740:intron 30.0%
AGAAGACAACCGTTTATTAA+CGG - chr2_2:55357104-55357123 Msa0258740:intron 30.0%
TAATGAAATGAGAGTAATGG+TGG - chr2_2:55357161-55357180 Msa0258740:intron 30.0%
CTAACCATGATAATTTCAGA+GGG + chr2_2:55357321-55357340 None:intergenic 30.0%
ACTAACCATGATAATTTCAG+AGG + chr2_2:55357322-55357341 None:intergenic 30.0%
TAACAACTTGTAACAAAGGA+TGG - chr2_2:55357650-55357669 Msa0258740:intron 30.0%
AAAAAGTGAGTGTCATATTG+GGG - chr2_2:55358073-55358092 Msa0258740:intron 30.0%
GGTTACGTTTAGACATAAAT+AGG - chr2_2:55358226-55358245 Msa0258740:intron 30.0%
! GTACACACTAATTTGCATTA+AGG - chr2_2:55358390-55358409 Msa0258740:intron 30.0%
GATATAACAACGTACATTTG+TGG + chr2_2:55358888-55358907 None:intergenic 30.0%
CCTTAAATTCAATCAAGATC+GGG + chr2_2:55358953-55358972 None:intergenic 30.0%
CCCTTAAATTCAATCAAGAT+CGG + chr2_2:55358954-55358973 None:intergenic 30.0%
CCGATCTTGATTGAATTTAA+GGG - chr2_2:55358951-55358970 Msa0258740:intron 30.0%
TTAAATTACCTCCACTACTT+TGG - chr2_2:55359103-55359122 Msa0258740:intron 30.0%
!!! AAGTTGGTTTTAGAAAGTGA+TGG - chr2_2:55359277-55359296 Msa0258740:CDS 30.0%
AGTAGTTAACTCATTTCTTG+AGG - chr2_2:55359356-55359375 Msa0258740:CDS 30.0%
AATAAAGCAGTAGCTAGTAT+AGG - chr2_2:55359461-55359480 Msa0258740:intron 30.0%
GATAAGCAATAAGCCAATAA+GGG + chr2_2:55359566-55359585 None:intergenic 30.0%
AGATAAGCAATAAGCCAATA+AGG + chr2_2:55359567-55359586 None:intergenic 30.0%
!! CTTGTTATTGGAGAATACTA+TGG - chr2_2:55359710-55359729 Msa0258740:intron 30.0%
! GATATTTTTCATGTGCCAAA+TGG - chr2_2:55359930-55359949 Msa0258740:intron 30.0%
! TTTGTGAAATGATTCTGAGA+AGG + chr2_2:55360149-55360168 None:intergenic 30.0%
ATGTATTAAAGTCCTACAAG+TGG - chr2_2:55360179-55360198 Msa0258740:intron 30.0%
GAAAATGTCAGTTGTTATCT+AGG - chr2_2:55360221-55360240 Msa0258740:intron 30.0%
!!! GAACTTGATTTTTCTGAGAC+AGG - chr2_2:55352834-55352853 Msa0258740:three_prime_UTR 35.0%
TCCCTTATGGAATTCATCAT+AGG - chr2_2:55352874-55352893 Msa0258740:three_prime_UTR 35.0%
!! GAAGAAGCAATTGTTTTGCA+AGG - chr2_2:55353060-55353079 Msa0258740:CDS 35.0%
! GTTTTGCAAGGAGTTAAGAA+TGG - chr2_2:55353072-55353091 Msa0258740:CDS 35.0%
! GAGTTGGTTATGCTTATCTA+AGG + chr2_2:55353161-55353180 None:intergenic 35.0%
!! CCTCTACTTTTAGAAAGAGT+TGG + chr2_2:55353177-55353196 None:intergenic 35.0%
! CCAACTCTTTCTAAAAGTAG+AGG - chr2_2:55353174-55353193 Msa0258740:intron 35.0%
CCTCAGAATCATTATGGTAT+TGG + chr2_2:55353258-55353277 None:intergenic 35.0%
CCAATACCATAATGATTCTG+AGG - chr2_2:55353255-55353274 Msa0258740:intron 35.0%
CTATTGCCTCAGAATCATTA+TGG + chr2_2:55353264-55353283 None:intergenic 35.0%
TTACTACTGTTGAGGTTTGA+TGG + chr2_2:55353552-55353571 None:intergenic 35.0%
!! AGAGAGTATTACTACTGTTG+AGG + chr2_2:55353560-55353579 None:intergenic 35.0%
TAATTGAATCAAGGCGACAA+GGG + chr2_2:55353686-55353705 None:intergenic 35.0%
TTAATTGAATCAAGGCGACA+AGG + chr2_2:55353687-55353706 None:intergenic 35.0%
TATTTGGAAATACAGGAAGG+TGG - chr2_2:55353763-55353782 Msa0258740:intron 35.0%
TTCCCTTAGTTTATGGGATA+TGG + chr2_2:55354094-55354113 None:intergenic 35.0%
!!! TGAAAAGCGTCATTTTCTCA+AGG + chr2_2:55354416-55354435 None:intergenic 35.0%
! ATTATGCAAGAAAGGCATGA+AGG - chr2_2:55354483-55354502 Msa0258740:intron 35.0%
TTTGCTCCGAGAAAAGAAAA+AGG - chr2_2:55354584-55354603 Msa0258740:CDS 35.0%
TTGCTCCGAGAAAAGAAAAA+GGG - chr2_2:55354585-55354604 Msa0258740:CDS 35.0%
! GCTATCCCTTTTTCTTTTCT+CGG + chr2_2:55354593-55354612 None:intergenic 35.0%
AGGAAATTATATCGCTCAAC+CGG + chr2_2:55354701-55354720 None:intergenic 35.0%
TTCATGTCAGAAAATCGTTC+AGG + chr2_2:55354867-55354886 None:intergenic 35.0%
!! CCATTTGACCATTTTTCAGT+AGG + chr2_2:55355155-55355174 None:intergenic 35.0%
CCTACTGAAAAATGGTCAAA+TGG - chr2_2:55355152-55355171 Msa0258740:intron 35.0%
TTGTTGTAGAAAAAAGGAGC+TGG - chr2_2:55355426-55355445 Msa0258740:intron 35.0%
ATAAACACCTTTGCATCAAG+TGG + chr2_2:55355468-55355487 None:intergenic 35.0%
GAAAAGTCGTCTAAGGAAAA+AGG - chr2_2:55355612-55355631 Msa0258740:intron 35.0%
! AAAAGGGTATGTTCATGGAT+TGG - chr2_2:55355902-55355921 Msa0258740:CDS 35.0%
!! ATTTGGCTCTCTATCTTTAG+GGG - chr2_2:55356360-55356379 Msa0258740:intron 35.0%
AGCACCTAAAATCTCATAGA+GGG - chr2_2:55356632-55356651 Msa0258740:intron 35.0%
GGAAATGAGCAGTATCATAA+TGG + chr2_2:55356704-55356723 None:intergenic 35.0%
!! TGATATTATGTCGGCTGTTT+TGG + chr2_2:55356961-55356980 None:intergenic 35.0%
GCAATGTTTGACATGGAATA+TGG - chr2_2:55357069-55357088 Msa0258740:intron 35.0%
TTGACATGGAATATGGAAGA+TGG - chr2_2:55357076-55357095 Msa0258740:intron 35.0%
GACGTGTTTCATCTTATCAA+TGG - chr2_2:55357243-55357262 Msa0258740:intron 35.0%
TTCATCTTATCAATGGCATG+TGG - chr2_2:55357250-55357269 Msa0258740:intron 35.0%
!! TAGACCCTCTGAAATTATCA+TGG - chr2_2:55357314-55357333 Msa0258740:intron 35.0%
TCATATTGGGGTGTATAAGA+TGG - chr2_2:55358085-55358104 Msa0258740:intron 35.0%
TTGTTGAACACCATCAACAA+GGG + chr2_2:55358605-55358624 None:intergenic 35.0%
TTTGTTGAACACCATCAACA+AGG + chr2_2:55358606-55358625 None:intergenic 35.0%
!! TGTTGATGGTGTTCAACAAA+TGG - chr2_2:55358606-55358625 Msa0258740:intron 35.0%
ACGAAGAAAACCTTCAAGAT+TGG + chr2_2:55358653-55358672 None:intergenic 35.0%
CCCGATCTTGATTGAATTTA+AGG - chr2_2:55358950-55358969 Msa0258740:intron 35.0%
! CTAACTTTTGAGCAACATGA+TGG + chr2_2:55359211-55359230 None:intergenic 35.0%
CATCATGTTGCTCAAAAGTT+AGG - chr2_2:55359209-55359228 Msa0258740:CDS 35.0%
TGCTCAAAAGTTAGGTCATA+AGG - chr2_2:55359217-55359236 Msa0258740:CDS 35.0%
!! CTGAAAGAGCTTTGTCTTTT+AGG - chr2_2:55359388-55359407 Msa0258740:CDS 35.0%
AATTGAAGGCTGATAACTTG+AGG - chr2_2:55359627-55359646 Msa0258740:intron 35.0%
GTGTGAGTAATCGACATAAT+TGG + chr2_2:55359667-55359686 None:intergenic 35.0%
! TTAGAGCTCTTAGTTCTCTT+TGG - chr2_2:55359738-55359757 Msa0258740:intron 35.0%
! TAGAGCTCTTAGTTCTCTTT+GGG - chr2_2:55359739-55359758 Msa0258740:intron 35.0%
TCAACTCATCATGTCCCTTA+TGG - chr2_2:55352861-55352880 Msa0258740:three_prime_UTR 40.0%
!! TGATTCTGAGGCAATAGACA+TGG - chr2_2:55353267-55353286 Msa0258740:intron 40.0%
!! GATTCTGAGGCAATAGACAT+GGG - chr2_2:55353268-55353287 Msa0258740:intron 40.0%
AATCATGCAAAAGGGTAGTG+AGG + chr2_2:55353320-55353339 None:intergenic 40.0%
GAGGTTTGATGGAATCTCAT+TGG + chr2_2:55353541-55353560 None:intergenic 40.0%
AGGGTGATTCTTGCTCAAAA+GGG + chr2_2:55353843-55353862 None:intergenic 40.0%
AAGGGTGATTCTTGCTCAAA+AGG + chr2_2:55353844-55353863 None:intergenic 40.0%
! TACGGGTACGTTTTGCAAAT+TGG + chr2_2:55354247-55354266 None:intergenic 40.0%
ATTGCAATAGTTGCAGTTCC+AGG + chr2_2:55354526-55354545 None:intergenic 40.0%
CAGAAAATCGTTCAGGAATC+AGG + chr2_2:55354860-55354879 None:intergenic 40.0%
AGATAAGCCACTTGATGCAA+AGG - chr2_2:55355458-55355477 Msa0258740:intron 40.0%
TGAGACGTTTAGCACAAAAC+AGG - chr2_2:55355578-55355597 Msa0258740:intron 40.0%
GAGACGTTTAGCACAAAACA+GGG - chr2_2:55355579-55355598 Msa0258740:intron 40.0%
GTTGGAGGAAATATAAGCTC+TGG - chr2_2:55355934-55355953 Msa0258740:CDS 40.0%
GAGCACCTAAAATCTCATAG+AGG - chr2_2:55356631-55356650 Msa0258740:intron 40.0%
! TGTGCCCTCTATGAGATTTT+AGG + chr2_2:55356639-55356658 None:intergenic 40.0%
!! GTTAAGAAACGGATTGCAAG+CGG - chr2_2:55357128-55357147 Msa0258740:intron 40.0%
! GAAATGAGAGTAATGGTGGA+TGG - chr2_2:55357165-55357184 Msa0258740:intron 40.0%
! GTCTAAAACCACCAATCCAA+AGG + chr2_2:55357299-55357318 None:intergenic 40.0%
TTTGGTGAAGAAAGAGCTTG+TGG - chr2_2:55358205-55358224 Msa0258740:intron 40.0%
CTTATGAGAAAGTGACGTTG+TGG + chr2_2:55358291-55358310 None:intergenic 40.0%
GTTGTCATATGTCAGTTGTG+TGG - chr2_2:55358310-55358329 Msa0258740:intron 40.0%
TCAGATGTTGATCCAGCAAT+TGG - chr2_2:55358450-55358469 Msa0258740:intron 40.0%
! ATTATTTGCTGCTCAGCTAG+TGG + chr2_2:55358478-55358497 None:intergenic 40.0%
ACTAGCTGAGCAGCAAATAA+TGG - chr2_2:55358477-55358496 Msa0258740:intron 40.0%
CTAGCTGAGCAGCAAATAAT+GGG - chr2_2:55358478-55358497 Msa0258740:intron 40.0%
TAGCTGAGCAGCAAATAATG+GGG - chr2_2:55358479-55358498 Msa0258740:intron 40.0%
! CAGCAAATAATGGGGATGTA+TGG - chr2_2:55358487-55358506 Msa0258740:intron 40.0%
TGTTGAACACCATCAACAAG+GGG + chr2_2:55358604-55358623 None:intergenic 40.0%
CAACAAATGGTTGTTGCCAT+AGG - chr2_2:55358619-55358638 Msa0258740:intron 40.0%
! TCTTGAAGGTTTTCTTCGTC+AGG - chr2_2:55358654-55358673 Msa0258740:intron 40.0%
ATGCAGCCACATAGATTACA+AGG + chr2_2:55358853-55358872 None:intergenic 40.0%
ATTACTCACACTTCGTCAAG+CGG - chr2_2:55359676-55359695 Msa0258740:CDS 40.0%
!! GCACGCTCTTTTCTTGTTAT+TGG - chr2_2:55359698-55359717 Msa0258740:CDS 40.0%
TAACTCATGCCAAACAACCA+CGG - chr2_2:55360106-55360125 Msa0258740:CDS 40.0%
TTTGCATATCCGTGGTTGTT+TGG + chr2_2:55360118-55360137 None:intergenic 40.0%
AACAACCACGGATATGCAAA+TGG - chr2_2:55360118-55360137 Msa0258740:CDS 40.0%
TTGAACCATTTGCATATCCG+TGG + chr2_2:55360126-55360145 None:intergenic 40.0%
TCCTACAAGTGGTTCTTGTT+GGG - chr2_2:55360190-55360209 Msa0258740:intron 40.0%
! TGAGCTTTATGTGCATGATG+AGG - chr2_2:55360314-55360333 Msa0258740:CDS 40.0%
! CAATAGACATGGGAAGGTGT+GGG - chr2_2:55353278-55353297 Msa0258740:intron 45.0%
! AATAGACATGGGAAGGTGTG+GGG - chr2_2:55353279-55353298 Msa0258740:intron 45.0%
AAGGTGTGGGGTTACAAACT+TGG - chr2_2:55353291-55353310 Msa0258740:intron 45.0%
AACATTTCCAGTGTAGCAGC+AGG + chr2_2:55353508-55353527 None:intergenic 45.0%
CACTGGAAATGTTCCCTTCT+TGG - chr2_2:55353515-55353534 Msa0258740:CDS 45.0%
GGAATCTCATTGGCCAAGAA+GGG + chr2_2:55353531-55353550 None:intergenic 45.0%
TGGAATCTCATTGGCCAAGA+AGG + chr2_2:55353532-55353551 None:intergenic 45.0%
CAGGAAGGTGGTAACAAATC+AGG - chr2_2:55353775-55353794 Msa0258740:intron 45.0%
GAAGGTGGTAACAAATCAGG+AGG - chr2_2:55353778-55353797 Msa0258740:intron 45.0%
ATCAGCAGCAGCCAAAGAAA+AGG - chr2_2:55354005-55354024 Msa0258740:intron 45.0%
!!! GAGTTTTCCTCTCTGAAGCA+CGG - chr2_2:55354216-55354235 Msa0258740:intron 45.0%
!!! AGTTTTCCTCTCTGAAGCAC+GGG - chr2_2:55354217-55354236 Msa0258740:intron 45.0%
TTTGCAAAACGTACCCGTAC+CGG - chr2_2:55354248-55354267 Msa0258740:intron 45.0%
ACCTTGGTACAGTTACGGTA+CGG - chr2_2:55354354-55354373 Msa0258740:intron 45.0%
! AACAAAGGTACGGGTACGTT+AGG + chr2_2:55354759-55354778 None:intergenic 45.0%
TCAGGAAAACCTGTGTTGCA+CGG + chr2_2:55354842-55354861 None:intergenic 45.0%
GATAGAGAGAGAGAGAGTGA+AGG - chr2_2:55354892-55354911 Msa0258740:intron 45.0%
AGAGAGAGAGAGTGAAGGAT+AGG - chr2_2:55354897-55354916 Msa0258740:intron 45.0%
ACGTTTAGCACAAAACAGGG+AGG - chr2_2:55355582-55355601 Msa0258740:intron 45.0%
CTGCAAGGAAAAGTCGTCTA+AGG - chr2_2:55355605-55355624 Msa0258740:intron 45.0%
!! GGTATGTTCATGGATTGGAG+TGG - chr2_2:55355907-55355926 Msa0258740:CDS 45.0%
!! ATGTTCATGGATTGGAGTGG+AGG - chr2_2:55355910-55355929 Msa0258740:CDS 45.0%
GCTAGTGCAATAATGTGGCA+AGG + chr2_2:55356900-55356919 None:intergenic 45.0%
! AGGAGGTGCAATGTTTGACA+TGG - chr2_2:55357062-55357081 Msa0258740:intron 45.0%
AAGCTGAACGTTGCTTCCTT+TGG - chr2_2:55357280-55357299 Msa0258740:CDS 45.0%
GAACGTTGCTTCCTTTGGAT+TGG - chr2_2:55357285-55357304 Msa0258740:intron 45.0%
! TAATGGGGATGTATGGACTG+AGG - chr2_2:55358494-55358513 Msa0258740:intron 45.0%
CAACAAGAGACTGTTGCAAC+TGG + chr2_2:55358564-55358583 None:intergenic 45.0%
TCTCTTGTTGACACCATTGC+TGG - chr2_2:55358574-55358593 Msa0258740:intron 45.0%
AAGATTGGCAAGCTTGCCTA+TGG + chr2_2:55358638-55358657 None:intergenic 45.0%
TGACGTGACAACCAAAGTAG+TGG + chr2_2:55359117-55359136 None:intergenic 45.0%
GTCCTACAAGTGGTTCTTGT+TGG - chr2_2:55360189-55360208 Msa0258740:intron 45.0%
!! AATTAAATAAAACTTATATA+TGG - chr2_2:55355392-55355411 Msa0258740:intron 5.0%
CTGAGGCAATAGACATGGGA+AGG - chr2_2:55353272-55353291 Msa0258740:intron 50.0%
GCAATAGACATGGGAAGGTG+TGG - chr2_2:55353277-55353296 Msa0258740:intron 50.0%
TTGCAAAACGTACCCGTACC+GGG - chr2_2:55354249-55354268 Msa0258740:intron 50.0%
TTGGTACAGTTACGGTACGG+CGG - chr2_2:55354357-55354376 Msa0258740:intron 50.0%
CAGGAAAACCTGTGTTGCAC+GGG + chr2_2:55354841-55354860 None:intergenic 50.0%
! CATTCAAAGAGCACGCTCTC+AGG - chr2_2:55355789-55355808 Msa0258740:intron 50.0%
!! ATGGATTGGAGTGGAGGTGT+TGG - chr2_2:55355916-55355935 Msa0258740:CDS 50.0%
! CGTTGCTTCCTTTGGATTGG+TGG - chr2_2:55357288-55357307 Msa0258740:intron 50.0%
CTTGTTGACACCATTGCTGG+AGG - chr2_2:55358577-55358596 Msa0258740:intron 50.0%
GGCAAGCTTGCCAATCTTGA+AGG - chr2_2:55358640-55358659 Msa0258740:intron 50.0%
CGTGACAACCAAAGTAGTGG+AGG + chr2_2:55359114-55359133 None:intergenic 50.0%
GCCCAACAAGAACCACTTGT+AGG + chr2_2:55360194-55360213 None:intergenic 50.0%
ATCCAGACCTGCTGCTACAC+TGG - chr2_2:55353498-55353517 Msa0258740:CDS 55.0%
TTCCAGTGTAGCAGCAGGTC+TGG + chr2_2:55353503-55353522 None:intergenic 55.0%
CATACGAGTACCAGTACCCG+CGG + chr2_2:55354279-55354298 None:intergenic 55.0%
GCCGTACCGTAACTGTACCA+AGG + chr2_2:55354358-55354377 None:intergenic 55.0%
GTACGGCGGTGGTACTCTTA+GGG - chr2_2:55354371-55354390 Msa0258740:intron 55.0%
TACGGTACCCGGTAAGGGTA+CGG + chr2_2:55354812-55354831 None:intergenic 55.0%
AAACCTGTGTTGCACGGGTG+CGG + chr2_2:55354836-55354855 None:intergenic 55.0%
CACAAAACAGGGAGGCTGCA+AGG - chr2_2:55355590-55355609 Msa0258740:intron 55.0%
!! GATTGGAGTGGAGGTGTTGG+AGG - chr2_2:55355919-55355938 Msa0258740:CDS 55.0%
CAGCTAGTGGCTCCAATTGC+TGG + chr2_2:55358465-55358484 None:intergenic 55.0%
GCATTCTTCGCAGCAAGCAG+AGG - chr2_2:55358516-55358535 Msa0258740:intron 55.0%
GCAGAGGAAGCTCTCTCACA+AGG - chr2_2:55358532-55358551 Msa0258740:intron 55.0%
AACAAGGGGTCCTCCAGCAA+TGG + chr2_2:55358590-55358609 None:intergenic 55.0%
! GGAGTACCCGTGCTTCAGAG+AGG + chr2_2:55354226-55354245 None:intergenic 60.0%
!! CGCGGGTACTGGTACTCGTA+TGG - chr2_2:55354277-55354296 Msa0258740:intron 60.0%
GTACAGTTACGGTACGGCGG+TGG - chr2_2:55354360-55354379 Msa0258740:intron 60.0%
GGTACGGCGGTGGTACTCTT+AGG - chr2_2:55354370-55354389 Msa0258740:intron 60.0%
! TAAGGGTACGGTGCGGGTAC+GGG + chr2_2:55354800-55354819 None:intergenic 60.0%
! GTAAGGGTACGGTGCGGGTA+CGG + chr2_2:55354801-55354820 None:intergenic 60.0%
TACCCGCACCGTACCCTTAC+CGG - chr2_2:55354801-55354820 Msa0258740:intron 60.0%
! TACCCGGTAAGGGTACGGTG+CGG + chr2_2:55354807-55354826 None:intergenic 60.0%
AACCTGTGTTGCACGGGTGC+GGG + chr2_2:55354835-55354854 None:intergenic 60.0%
GCTGGAGGACCCCTTGTTGA+TGG - chr2_2:55358592-55358611 Msa0258740:intron 60.0%
TACCCGTACCGGGTACTCCG+CGG - chr2_2:55354259-55354278 Msa0258740:intron 65.0%
! TACCCGCGGAGTACCCGGTA+CGG + chr2_2:55354265-55354284 None:intergenic 65.0%
! ACCAGTACCCGCGGAGTACC+CGG + chr2_2:55354270-55354289 None:intergenic 65.0%
ACCCGCACCGTACCCTTACC+GGG - chr2_2:55354802-55354821 Msa0258740:intron 65.0%
! ACCCGGTAAGGGTACGGTGC+GGG + chr2_2:55354806-55354825 None:intergenic 65.0%
GCGGGTACGGTACCCGGTAA+GGG + chr2_2:55354817-55354836 None:intergenic 65.0%
TGCGGGTACGGTACCCGGTA+AGG + chr2_2:55354818-55354837 None:intergenic 65.0%
GTGTTGCACGGGTGCGGGTA+CGG + chr2_2:55354830-55354849 None:intergenic 65.0%
TACCCGCACCCGTGCAACAC+AGG - chr2_2:55354830-55354849 Msa0258740:intron 65.0%
ACCCGTACCGGGTACTCCGC+GGG - chr2_2:55354260-55354279 Msa0258740:intron 70.0%
! ACCCGCGGAGTACCCGGTAC+GGG + chr2_2:55354264-55354283 None:intergenic 70.0%
ACCGGGTACTCCGCGGGTAC+TGG - chr2_2:55354266-55354285 Msa0258740:intron 70.0%
ACGGGTGCGGGTACGGTACC+CGG + chr2_2:55354823-55354842 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 55352813 55360397 55352813 ID=Msa0258740;Name=Msa0258740
chr2_2 mRNA 55352813 55360397 55352813 ID=Msa0258740-mRNA-1;Parent=Msa0258740;Name=Msa0258740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.18|0.16|1|1|1|12|222|494
chr2_2 exon 55352813 55353122 55352813 ID=Msa0258740-mRNA-1:exon:16742;Parent=Msa0258740-mRNA-1
chr2_2 exon 55353433 55353575 55353433 ID=Msa0258740-mRNA-1:exon:16741;Parent=Msa0258740-mRNA-1
chr2_2 exon 55354535 55354756 55354535 ID=Msa0258740-mRNA-1:exon:16740;Parent=Msa0258740-mRNA-1
chr2_2 exon 55355875 55356146 55355875 ID=Msa0258740-mRNA-1:exon:16739;Parent=Msa0258740-mRNA-1
chr2_2 exon 55357255 55357303 55357255 ID=Msa0258740-mRNA-1:exon:16738;Parent=Msa0258740-mRNA-1
chr2_2 exon 55357400 55357477 55357400 ID=Msa0258740-mRNA-1:exon:16737;Parent=Msa0258740-mRNA-1
chr2_2 exon 55357577 55357636 55357577 ID=Msa0258740-mRNA-1:exon:16736;Parent=Msa0258740-mRNA-1
chr2_2 exon 55357731 55357775 55357731 ID=Msa0258740-mRNA-1:exon:16735;Parent=Msa0258740-mRNA-1
chr2_2 exon 55359184 55359432 55359184 ID=Msa0258740-mRNA-1:exon:16734;Parent=Msa0258740-mRNA-1
chr2_2 exon 55359643 55359722 55359643 ID=Msa0258740-mRNA-1:exon:16733;Parent=Msa0258740-mRNA-1
chr2_2 exon 55360096 55360184 55360096 ID=Msa0258740-mRNA-1:exon:16732;Parent=Msa0258740-mRNA-1
chr2_2 exon 55360288 55360397 55360288 ID=Msa0258740-mRNA-1:exon:16731;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55360288 55360397 55360288 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55360096 55360184 55360096 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55359643 55359722 55359643 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55359184 55359432 55359184 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55357731 55357775 55357731 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55357577 55357636 55357577 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55357400 55357477 55357400 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55357255 55357303 55357255 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55355875 55356146 55355875 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55354535 55354756 55354535 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55353433 55353575 55353433 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 CDS 55353035 55353122 55353035 ID=Msa0258740-mRNA-1:cds;Parent=Msa0258740-mRNA-1
chr2_2 three_prime_UTR 55352813 55353034 55352813 ID=Msa0258740-mRNA-1:three_prime_utr;Parent=Msa0258740-mRNA-1
Gene Sequence

>Msa0258740

ATGGCGAGCCAAAGAATAGGAGAACTTGATTTTTCTGAGACAGGACATTCAACTCATCATGTCCCTTATGGAATTCATCATAGGATTAATAATCCTTCATCAAGTTTAATGAATGAAGAATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATTGTTTTGCAAGGAGTTAAGAATGGAAATGATGAAACAAAAGCATCTTTTTTCACATCCAGACCTGCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAAACCTCAACAGTAGAAGGTGGTAACAAATCAGGAGGTGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCTTTTGAGCAAGAATCACCCTTAAGTAAAAAAGCATCTTCTTTTTCATCAGATCATAATAATAATATGGATCAGCAGAATCTTCAGCTACAACAACAGAAGATAATAATATCAAATGATGCTTCTGCTACTATAAGAACAGCCTCTTCATCACAGAATCAAATATCAGCAGCAGCCAAAGAAAAGAAAAAAGGAGCTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGACGTTTAGCACAAAACAGGGAGGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGCTTATGTGCAGCAACTTGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACATTCAAAGAGCACGCTCTCAGGGTATGTTCATGGATTGGAGTGGAGGTGTTGGAGGAAATATAAGCTCTGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACAACCGTTTATTAACGGAGTTAAGAAACGGATTGCAAGCGGCGTTAACAGATAATGAAATGAGAGTAATGGTGGATGGATATTTGTGTCATTATGATCAAATATTTAGACTCAAAGGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATCATGATGTTGATCCAGCAATTGGAGCCACTAGCTGAGCAGCAAATAATGGGGATGTATGGACTGAGGCATTCTTCGCAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGACCAGTTGCAACAGTCTCTTGTTGACACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATAGGCAAGCTTGCCAATCTTGAAGGTTTTCTTCGTCAGGCTGATAACTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACACTTCGTCAAGCGGCACGCTCTTTTCTTGTTATTGGAGAATACTATGGACGACTTAGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGAACATGATCAGTGATGATAACTCATGCCAAACAACCACGGATATGCAAATGGTTCAACCTTCTCAGAATCATTTCACAAATTTCTGA

Protein sequence

>Msa0258740

MASQRIGELDFSETGHSTHHVPYGIHHRINNPSSSLMNEESGFDFGELEEAIVLQGVKNGNDETKASFFTSRPAATLEMFPSWPMRFHQTSTVEGGNKSGGESSDSALSSKNENPFEQESPLSKKASSFSSDHNNNMDQQNLQLQQQKIIISNDASATIRTASSSQNQISAAAKEKKKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDIQRARSQGMFMDWSGGVGGNISSGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLANLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMISDDNSCQTTTDMQMVQPSQNHFTNF*