AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0297180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297180 MtrunA17_Chr2g0323051 96.271 590 22 0 1 590 1 590 0.0 1194
Msa0297180 MtrunA17_Chr4g0023601 72.470 494 136 0 75 568 2 495 0.0 790
Msa0297180 MtrunA17_Chr4g0055281 50.325 461 214 6 59 515 53 502 2.07e-156 459
Msa0297180 MtrunA17_Chr6g0481031 48.052 462 224 8 86 535 106 563 5.62e-155 456
Msa0297180 MtrunA17_Chr5g0400001 50.577 433 197 4 86 515 87 505 9.77e-152 447
Msa0297180 MtrunA17_Chr5g0399991 50.459 436 199 4 83 515 86 507 1.51e-151 447
Msa0297180 MtrunA17_Chr7g0247631 47.826 460 229 6 63 517 241 694 5.14e-143 430
Msa0297180 MtrunA17_Chr5g0408851 41.379 435 246 4 85 517 217 644 8.23e-121 371
Msa0297180 MtrunA17_Chr8g0388651 37.415 441 259 8 87 518 80 512 2.98e-101 317
Msa0297180 MtrunA17_Chr2g0286431 35.308 439 263 8 83 516 80 502 2.58e-94 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297180 AT2G32290.1 64.207 542 187 3 50 590 42 577 0.0 739
Msa0297180 AT4G15210.1 62.575 497 185 1 73 568 1 497 0.0 688
Msa0297180 AT4G15210.3 63.514 444 162 0 125 568 1 444 0.0 633
Msa0297180 AT4G15210.4 63.514 444 162 0 125 568 1 444 0.0 633
Msa0297180 AT4G15210.2 66.585 410 136 1 73 481 1 410 0.0 604
Msa0297180 AT4G00490.1 52.523 436 197 4 86 517 95 524 2.92e-164 479
Msa0297180 AT4G17090.1 51.039 433 201 4 86 515 86 510 1.28e-158 465
Msa0297180 AT3G23920.1 49.351 462 220 7 86 535 106 565 5.22e-158 465
Msa0297180 AT2G45880.1 46.804 438 221 5 85 517 247 677 2.21e-138 418
Msa0297180 AT5G45300.2 41.284 436 248 4 85 518 252 681 3.18e-118 366
Msa0297180 AT5G45300.1 41.284 436 248 4 85 518 254 683 3.32e-118 366
Msa0297180 AT5G45300.3 41.284 436 248 4 85 518 268 697 5.66e-118 366
Msa0297180 AT5G55700.1 40.848 448 241 9 86 518 92 530 8.71e-111 342
Msa0297180 AT5G55700.2 41.570 344 181 8 186 518 33 367 5.53e-84 267
Msa0297180 AT5G18670.1 31.004 458 296 8 60 515 62 501 1.73e-76 253

Find 143 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGCTTTGTTCTTGAATT+TGG 0.098697 2_3:-50843387 None:intergenic
GATAATAAACCTTTCTTTAA+TGG 0.136465 2_3:+50845421 Msa0297180:CDS
TTTCCATTCCATTACCTAAA+TGG 0.151036 2_3:+50845311 Msa0297180:CDS
ATGATTGATCAATAATAAAA+TGG 0.173407 2_3:+50847962 Msa0297180:three_prime_UTR
GTCTAGCATTTAGAAGAATT+TGG 0.238931 2_3:-50847487 None:intergenic
TATTCTCAGTTTGCAACTTT+TGG 0.250684 2_3:-50848041 None:intergenic
CAGACAACGTTCTGTGTCTT+TGG 0.257815 2_3:+50843446 Msa0297180:CDS
ACCAAATGGTGTTAACAAAA+AGG 0.258115 2_3:+50847508 Msa0297180:CDS
CCAACTTCAAGTACCCATTT+AGG 0.283522 2_3:-50845325 None:intergenic
CTCTGTTTGGTAAGTTCCCT+TGG 0.285933 2_3:-50846420 None:intergenic
CAGTGTTGGTTCTTCATTCA+TGG 0.286766 2_3:-50843088 None:intergenic
ATATAAATAAATAAATAAAT+AGG 0.291867 2_3:+50848063 Msa0297180:three_prime_UTR
ACACCAATAGTTCAGGTATC+AGG 0.292663 2_3:+50845371 Msa0297180:CDS
AGAATATCCGATGGAATCTT+TGG 0.294871 2_3:-50847785 None:intergenic
ACTCCATACATCCTTAGTTT+TGG 0.297957 2_3:-50847536 None:intergenic
CATGAAGAAACGAGTGAAAA+AGG 0.299156 2_3:+50843013 None:intergenic
AAAATTTCCCTTTCTCTGTT+TGG 0.305976 2_3:-50846433 None:intergenic
TTAGATGACCCTGCATTATT+AGG 0.311220 2_3:-50846365 None:intergenic
AAGTTCCTGCGCACAACTTT+TGG 0.311792 2_3:-50847155 None:intergenic
CATCAATGTGGAGGGAATAT+TGG 0.317025 2_3:+50845280 Msa0297180:CDS
GGCTGGGTATTTCCTGGTAT+TGG 0.319528 2_3:+50845949 Msa0297180:CDS
GTCCTTGTTTCAACTGGTTC+AGG 0.328216 2_3:+50845222 Msa0297180:CDS
TAATGGAAGAACTCCCATTC+AGG 0.337236 2_3:+50845438 Msa0297180:CDS
TATATGCATTGAAGTGCTTA+AGG 0.345801 2_3:+50843228 Msa0297180:five_prime_UTR
GTTACTTCAGACCATGGATA+TGG 0.352538 2_3:-50847833 None:intergenic
TAGTTCAGGTATCAGGAATA+AGG 0.355369 2_3:+50845378 Msa0297180:CDS
ATTCCTGATACCTGAACTAT+TGG 0.356194 2_3:-50845374 None:intergenic
GTGTAATGATAGTATTTCTC+TGG 0.363750 2_3:-50847740 None:intergenic
ATGAATATTATCAAATTTGA+AGG 0.373538 2_3:-50843409 None:intergenic
CCTTATTTATCTATGATCAT+TGG 0.375895 2_3:+50843064 Msa0297180:five_prime_UTR
TTCGTATAATTTGCAACATT+AGG 0.381270 2_3:+50843251 Msa0297180:five_prime_UTR
AGAGAGAACCTTGAAGTTGC+TGG 0.383951 2_3:+50847425 Msa0297180:CDS
TTATTAGGCAGCTCCCATTC+AGG 0.387793 2_3:-50846350 None:intergenic
ATATAGGTCCTTGTTTCAAC+TGG 0.393657 2_3:+50845216 Msa0297180:CDS
TTCCATTCCATTACCTAAAT+GGG 0.397927 2_3:+50845312 Msa0297180:CDS
CATGCTGCAGAGCTTACTTC+AGG 0.404999 2_3:+50847013 Msa0297180:CDS
CTTCTAAATGCTAGACCAAA+TGG 0.415851 2_3:+50847494 Msa0297180:CDS
CCAATGATCATAGATAAATA+AGG 0.417804 2_3:-50843064 None:intergenic
CTATTGGTGTAAAAGATATC+AGG 0.420283 2_3:-50845358 None:intergenic
TCAAGTACCCATTTAGGTAA+TGG 0.420866 2_3:-50845319 None:intergenic
GGTACATAATTTGCTAGCAT+TGG 0.423427 2_3:-50844937 None:intergenic
TCTCTAGGCTGGGTATTTCC+TGG 0.424224 2_3:+50845943 Msa0297180:CDS
TGATAGTATTTCTCTGGGTC+TGG 0.428002 2_3:-50847734 None:intergenic
GCAACCTAGGAATACTTTGT+TGG 0.430514 2_3:-50846513 None:intergenic
CTACGAGCAGCAGGTGTTGA+TGG 0.431754 2_3:+50845127 Msa0297180:CDS
ACTGGGAGCATCACATATAT+AGG 0.438101 2_3:-50844958 None:intergenic
TGATTGATCAATAATAAAAT+GGG 0.440950 2_3:+50847963 Msa0297180:three_prime_UTR
TACACATGGTGATGAAATCT+TGG 0.441517 2_3:+50846484 Msa0297180:CDS
GGAGTTCTTCCATTAAAGAA+AGG 0.443893 2_3:-50845430 None:intergenic
CTAACTTCACTTTGCAACCT+AGG 0.444418 2_3:-50846526 None:intergenic
TGCTTATTAGCTAACCTGAA+TGG 0.456713 2_3:-50845452 None:intergenic
CAAGAGCAGGCCATCCTGAA+TGG 0.457085 2_3:+50846336 Msa0297180:CDS
GCTTATTAGCTAACCTGAAT+GGG 0.457137 2_3:-50845451 None:intergenic
AGCAGGTGTTGATGGAGTTA+TGG 0.457290 2_3:+50845135 Msa0297180:CDS
GATAAAATGGTTACCTCTGC+AGG 0.461646 2_3:-50843498 None:intergenic
TTGTTGTGTTTGTGTAATGA+AGG 0.462695 2_3:-50843176 None:intergenic
ATGGAGTTATGGTTGATGTC+TGG 0.466921 2_3:+50845146 Msa0297180:CDS
CTGAAGGAGCTACGAGCAGC+AGG 0.467025 2_3:+50845118 Msa0297180:CDS
TCGTATGTTGAAGGAACAAT+TGG 0.472772 2_3:-50844910 None:intergenic
AACTGAAAATGTGAATGAAA+AGG 0.473578 2_3:+50847935 Msa0297180:exon
ATGTCTTGAGATGAGAAATT+CGG 0.474129 2_3:+50847117 Msa0297180:CDS
CTTATGCAGAATCTCTAGGC+TGG 0.476981 2_3:+50845932 Msa0297180:CDS
TGCGCAGGAACTTGTTCAGC+AGG 0.478088 2_3:+50847165 Msa0297180:CDS
GGAACTTACCAAACAGAGAA+AGG 0.480151 2_3:+50846425 Msa0297180:CDS
AGGGTCCTCAGCAGTATGAT+TGG 0.482307 2_3:+50845188 Msa0297180:CDS
CTATCATTACACAGTCCCTA+TGG 0.483589 2_3:+50847751 Msa0297180:CDS
ATGAGTGTTAATGAAGCTAC+TGG 0.483626 2_3:+50847860 Msa0297180:CDS
GAGAGAACCTTGAAGTTGCT+GGG 0.485365 2_3:+50847426 Msa0297180:CDS
AGTTATGGTTGATGTCTGGT+GGG 0.485373 2_3:+50845150 Msa0297180:CDS
AAAGAGGCTGCAACAAGAGC+AGG 0.485937 2_3:+50846323 Msa0297180:CDS
GAGTTATGGTTGATGTCTGG+TGG 0.486306 2_3:+50845149 Msa0297180:CDS
TTTATGTGTTTCCTAAAACT+TGG 0.489544 2_3:+50843124 Msa0297180:five_prime_UTR
GAAGTAGGACTTGGCCCTGC+TGG 0.494381 2_3:+50845892 Msa0297180:CDS
CCTCCAAAACTAAGGATGTA+TGG 0.500922 2_3:+50847533 Msa0297180:CDS
AAAAGGGCCCTCCAAAACTA+AGG 0.504860 2_3:+50847525 Msa0297180:CDS
CCTAGAGATTCTGCATAAGA+AGG 0.509260 2_3:-50845928 None:intergenic
AAGAGCAGGCCATCCTGAAT+GGG 0.510122 2_3:+50846337 Msa0297180:CDS
TGGGAGCTGCCTAATAATGC+AGG 0.510842 2_3:+50846356 Msa0297180:CDS
CCTAAATGGGTACTTGAAGT+TGG 0.512349 2_3:+50845325 Msa0297180:CDS
GATTACAAACGACAATGTCT+TGG 0.515941 2_3:+50845069 Msa0297180:CDS
AGTATGATTGGTCAGCATAT+AGG 0.517008 2_3:+50845200 Msa0297180:CDS
CCTTCTTATGCAGAATCTCT+AGG 0.526590 2_3:+50845928 Msa0297180:CDS
GAAGCCAACAAAGTATTCCT+AGG 0.529512 2_3:+50846509 Msa0297180:CDS
ATTAATTAGTGTGTAGAATG+AGG 0.529693 2_3:+50843283 Msa0297180:exon
TGTTGTGTTTGTGTAATGAA+GGG 0.535913 2_3:-50843175 None:intergenic
GGAATGTATTTCACTTGGTG+TGG 0.536095 2_3:+50845399 Msa0297180:CDS
ATTGGATCTTCGTATGTTGA+AGG 0.538202 2_3:-50844919 None:intergenic
GTGGGGTATAGTAGAATCAA+AGG 0.538270 2_3:+50845168 Msa0297180:CDS
GAACTTACCAAACAGAGAAA+GGG 0.543731 2_3:+50846426 Msa0297180:CDS
GTATAATTTGCAACATTAGG+AGG 0.545524 2_3:+50843254 Msa0297180:five_prime_UTR
TCTCTCTCCACCCTCCACTC+AGG 0.551609 2_3:-50847409 None:intergenic
TAACCTTCACTGTCATACCT+TGG 0.552850 2_3:-50847461 None:intergenic
TGATTACAGGTCCTGAGTGG+AGG 0.553219 2_3:+50847398 Msa0297180:intron
AACAGATTGCTGGAATCCAC+TGG 0.553445 2_3:+50846972 Msa0297180:intron
TACCCATTTAGGTAATGGAA+TGG 0.556693 2_3:-50845314 None:intergenic
GATTACAGGTCCTGAGTGGA+GGG 0.557755 2_3:+50847399 Msa0297180:intron
GATCAATAATAAAATGGGAA+AGG 0.560835 2_3:+50847968 Msa0297180:three_prime_UTR
ATGGATACCGTCCCGTGGCA+AGG 0.567231 2_3:+50847059 Msa0297180:CDS
AAACACATAAATAAGAGAAG+TGG 0.573088 2_3:-50843112 None:intergenic
AGAAGCCAAAAGTTGTGCGC+AGG 0.573900 2_3:+50847150 Msa0297180:CDS
TCTTCAAGCTGATTTCAAAG+AGG 0.575694 2_3:+50846307 Msa0297180:CDS
GTTATGGTTGATGTCTGGTG+GGG 0.576228 2_3:+50845151 Msa0297180:CDS
TTATGCAGAATCTCTAGGCT+GGG 0.578110 2_3:+50845933 Msa0297180:CDS
CTACTGATAGACATTGAAGT+AGG 0.580486 2_3:+50845877 Msa0297180:CDS
GGATATCTGAGTTCTCCAGC+AGG 0.582473 2_3:-50845907 None:intergenic
ATATCCATGGTCTGAAGTAA+CGG 0.582490 2_3:+50847835 Msa0297180:CDS
TGTAATGATAGTATTTCTCT+GGG 0.589768 2_3:-50847739 None:intergenic
ATCCTGAACCAGTTGAAACA+AGG 0.590334 2_3:-50845224 None:intergenic
ATGTCATTTCATCAATGTGG+AGG 0.591453 2_3:+50845271 Msa0297180:CDS
CTGGGGAAAATGCACTTCCA+AGG 0.595962 2_3:+50847444 Msa0297180:CDS
CGAGCGAACATCCTTGCCAC+GGG 0.597519 2_3:-50847070 None:intergenic
TGCAATTGCTGAACCTGCAG+AGG 0.598516 2_3:+50843485 Msa0297180:CDS
CTGAAGTAAGCTCTGCAGCA+TGG 0.601612 2_3:-50847012 None:intergenic
AATAAGGAATGTATTTCACT+TGG 0.602381 2_3:+50845394 Msa0297180:CDS
GTCAAAACCAAAGATTCCAT+CGG 0.609871 2_3:+50847778 Msa0297180:CDS
ATAAGAGAAGTGGACAGTGT+TGG 0.612446 2_3:-50843102 None:intergenic
AAGCAGTGAAGCCATATCCA+TGG 0.615424 2_3:+50847822 Msa0297180:CDS
TGTCATTTCATCAATGTGGA+GGG 0.615775 2_3:+50845272 Msa0297180:CDS
TGGGGTATAGTAGAATCAAA+GGG 0.616212 2_3:+50845169 Msa0297180:CDS
TACAGGTCCTGAGTGGAGGG+TGG 0.618532 2_3:+50847402 Msa0297180:intron
ATAGACATTGAAGTAGGACT+TGG 0.622597 2_3:+50845883 Msa0297180:CDS
TACAACTTAAGTGATAGAGA+TGG 0.622813 2_3:+50847040 Msa0297180:CDS
ATTACACAGTCCCTATGGAA+AGG 0.629072 2_3:+50847756 Msa0297180:CDS
AGAGAACCTTGAAGTTGCTG+GGG 0.631483 2_3:+50847427 Msa0297180:CDS
ACATTAAATTCTCCAATACC+AGG 0.631717 2_3:-50845961 None:intergenic
TAGGCAGCTCCCATTCAGGA+TGG 0.634532 2_3:-50846346 None:intergenic
TCTAACAAATTGCTTACACA+TGG 0.637957 2_3:+50846470 Msa0297180:CDS
CTATACGTGTAGATAGAGCA+AGG 0.639367 2_3:+50843361 Msa0297180:CDS
CGAACATCCTTGCCACGGGA+CGG 0.640912 2_3:-50847066 None:intergenic
ATAATTCTTCTGTCAAACGT+AGG 0.642615 2_3:-50847565 None:intergenic
TCGAGCGAACATCCTTGCCA+CGG 0.649016 2_3:-50847071 None:intergenic
ATAATGTCATTTCATCAATG+TGG 0.649124 2_3:+50845268 Msa0297180:CDS
AAAACTCGAGAAACAGCTGA+AGG 0.651352 2_3:+50845102 Msa0297180:CDS
ATATCCGTTACTTCAGACCA+TGG 0.651609 2_3:-50847839 None:intergenic
CTTCCAAGGTATGACAGTGA+AGG 0.658863 2_3:+50847458 Msa0297180:CDS
ATTTGATTACAGGTCCTGAG+TGG 0.659107 2_3:+50847395 Msa0297180:intron
GGGAGCTGCCTAATAATGCA+GGG 0.662617 2_3:+50846357 Msa0297180:CDS
GCTTCAAGAAGAATATCCGA+TGG 0.663241 2_3:-50847794 None:intergenic
GCTGACCAATCATACTGCTG+AGG 0.670708 2_3:-50845193 None:intergenic
AATTCTAGTTCATAACACAA+AGG 0.694982 2_3:-50848013 None:intergenic
TAGAGATGGATACCGTCCCG+TGG 0.696239 2_3:+50847054 Msa0297180:CDS
GATATCTGAGTTCTCCAGCA+GGG 0.705382 2_3:-50845906 None:intergenic
AGATTGCTGGAATCCACTGG+TGG 0.714797 2_3:+50846975 Msa0297180:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATAAATAAATAAAT+AGG + chr2_3:50848063-50848082 Msa0297180:three_prime_UTR 0.0%
!!! GATTTTTATGATATTTATTT+TGG - chr2_3:50843659-50843678 None:intergenic 10.0%
!!! TGCTTAATAATTTTTTTATA+TGG + chr2_3:50845749-50845768 Msa0297180:intron 10.0%
!!! AAATTATTTCTTTCAATATA+TGG + chr2_3:50846898-50846917 Msa0297180:intron 10.0%
!!! ATTAATATTTTCATATTTGA+TGG + chr2_3:50847666-50847685 Msa0297180:intron 10.0%
!! ATGAATATTATCAAATTTGA+AGG - chr2_3:50843412-50843431 None:intergenic 15.0%
!!! TATAATTATTTGCTACTATA+TGG - chr2_3:50843536-50843555 None:intergenic 15.0%
!! ATAAATATCATAAAAATCCA+AGG + chr2_3:50843661-50843680 Msa0297180:intron 15.0%
!!! TATGTACTCTTTTTTATTAT+TGG - chr2_3:50843850-50843869 None:intergenic 15.0%
!! ATAATAGACTAATAGTAATA+AGG + chr2_3:50844007-50844026 Msa0297180:intron 15.0%
!! TAATAGACTAATAGTAATAA+GGG + chr2_3:50844008-50844027 Msa0297180:intron 15.0%
!! ATAAATGAGAAGTTAAAAAA+AGG + chr2_3:50844077-50844096 Msa0297180:intron 15.0%
!! TTAAAGAATAATACAAGAAA+AGG - chr2_3:50844361-50844380 None:intergenic 15.0%
!! TGATCATTATAATTTGAAAA+GGG - chr2_3:50844496-50844515 None:intergenic 15.0%
!! ATGATCATTATAATTTGAAA+AGG - chr2_3:50844497-50844516 None:intergenic 15.0%
!!! TGTTAGAAATTCATATTTTT+TGG + chr2_3:50844640-50844659 Msa0297180:intron 15.0%
!!! GTTAGAAATTCATATTTTTT+GGG + chr2_3:50844641-50844660 Msa0297180:intron 15.0%
!! TTATGTTAGAACTATATATT+TGG - chr2_3:50844865-50844884 None:intergenic 15.0%
!! TATTTCCTATTTATAGTTAA+TGG + chr2_3:50845488-50845507 Msa0297180:intron 15.0%
!!! AGAATTTTTTTGTAACATTA+AGG + chr2_3:50845696-50845715 Msa0297180:intron 15.0%
!! TATCATATTTGTTTAGTTAT+TGG + chr2_3:50845782-50845801 Msa0297180:intron 15.0%
!!! ATATATCAAAATTTTGTTTC+TGG - chr2_3:50847592-50847611 None:intergenic 15.0%
!! ATGATTGATCAATAATAAAA+TGG + chr2_3:50847962-50847981 Msa0297180:three_prime_UTR 15.0%
!! TGATTGATCAATAATAAAAT+GGG + chr2_3:50847963-50847982 Msa0297180:three_prime_UTR 15.0%
!! GAAAGGAAAATATGATAAAA+TGG - chr2_3:50843514-50843533 None:intergenic 20.0%
!! AACATGAAAATTAAAATCAG+AGG + chr2_3:50844140-50844159 Msa0297180:intron 20.0%
!! AAATTAAAATCAGAGGAATA+TGG + chr2_3:50844147-50844166 Msa0297180:intron 20.0%
!! ACAAAACAAGACAATTAAAA+AGG + chr2_3:50844445-50844464 Msa0297180:intron 20.0%
!!! CATGAATTAATATTTTTGAG+AGG + chr2_3:50844514-50844533 Msa0297180:intron 20.0%
!!! ATTGCACATTTATTTTTGAA+GGG - chr2_3:50844699-50844718 None:intergenic 20.0%
!!! TATTGCACATTTATTTTTGA+AGG - chr2_3:50844700-50844719 None:intergenic 20.0%
!! AATGGAACATATATGTATAT+GGG - chr2_3:50845013-50845032 None:intergenic 20.0%
!! AAATGGAACATATATGTATA+TGG - chr2_3:50845014-50845033 None:intergenic 20.0%
!! GATAATAAACCTTTCTTTAA+TGG + chr2_3:50845421-50845440 Msa0297180:CDS 20.0%
!! GAATTCCATTAACTATAAAT+AGG - chr2_3:50845496-50845515 None:intergenic 20.0%
!! TTGACAAAGTTTATTGAAAA+CGG + chr2_3:50845575-50845594 Msa0297180:intron 20.0%
!! CAAAAAAATTCTGTCAAATA+CGG - chr2_3:50845688-50845707 None:intergenic 20.0%
!!! GTGTCAAACTTTTTTATATT+AGG + chr2_3:50847353-50847372 Msa0297180:intron 20.0%
!!! TAATTTGTGTATTTGATTAC+AGG + chr2_3:50847385-50847404 Msa0297180:intron 20.0%
! CCAATGATCATAGATAAATA+AGG - chr2_3:50843067-50843086 None:intergenic 25.0%
!! CCTTATTTATCTATGATCAT+TGG + chr2_3:50843064-50843083 Msa0297180:five_prime_UTR 25.0%
! AAACACATAAATAAGAGAAG+TGG - chr2_3:50843115-50843134 None:intergenic 25.0%
! TTTATGTGTTTCCTAAAACT+TGG + chr2_3:50843124-50843143 Msa0297180:five_prime_UTR 25.0%
!! ATATATATGGACCAAGTTTT+AGG - chr2_3:50843138-50843157 None:intergenic 25.0%
!! TTCGTATAATTTGCAACATT+AGG + chr2_3:50843251-50843270 Msa0297180:five_prime_UTR 25.0%
! ATTAATTAGTGTGTAGAATG+AGG + chr2_3:50843283-50843302 Msa0297180:exon 25.0%
!! TTATTTGCTACTATATGGAA+AGG - chr2_3:50843531-50843550 None:intergenic 25.0%
! TAAAAATCCAAGGTTGAATT+TGG + chr2_3:50843671-50843690 Msa0297180:intron 25.0%
! TCATTATAATTTGAAAAGGG+AGG - chr2_3:50844493-50844512 None:intergenic 25.0%
! TTAGCATGTGAAATTATTGA+AGG - chr2_3:50844560-50844579 None:intergenic 25.0%
!!! TTGCACATTTATTTTTGAAG+GGG - chr2_3:50844698-50844717 None:intergenic 25.0%
!!! TTCTTCTTTTTTCTAGTACA+TGG - chr2_3:50844728-50844747 None:intergenic 25.0%
!!! TAGTTCTAACATAACAGTTT+TGG + chr2_3:50844871-50844890 Msa0297180:intron 25.0%
! TAATAGTGTAATCACTTACT+GGG - chr2_3:50844978-50844997 None:intergenic 25.0%
! ATAATAGTGTAATCACTTAC+TGG - chr2_3:50844979-50844998 None:intergenic 25.0%
!! ATAATGTCATTTCATCAATG+TGG + chr2_3:50845268-50845287 Msa0297180:CDS 25.0%
! AATAAGGAATGTATTTCACT+TGG + chr2_3:50845394-50845413 Msa0297180:CDS 25.0%
!!! GTTTGTGAATTTTTTGCTAT+AGG + chr2_3:50845986-50846005 Msa0297180:intron 25.0%
!!! ACTCTTTTTTGTTTTGGATT+CGG - chr2_3:50846173-50846192 None:intergenic 25.0%
!!! AAGGGAAATTTTTTCTTACA+TGG + chr2_3:50846444-50846463 Msa0297180:CDS 25.0%
! AAATAGGTGATTAATTACGT+TGG - chr2_3:50846820-50846839 None:intergenic 25.0%
! ATTCATAAAAAACAGATTGC+TGG + chr2_3:50846962-50846981 Msa0297180:intron 25.0%
! TCATGAATAGAAACATGTTA+TGG - chr2_3:50847266-50847285 None:intergenic 25.0%
! TGTAATGATAGTATTTCTCT+GGG - chr2_3:50847742-50847761 None:intergenic 25.0%
!! TTCATTCACATTTTCAGTTT+CGG - chr2_3:50847934-50847953 None:intergenic 25.0%
! AACTGAAAATGTGAATGAAA+AGG + chr2_3:50847935-50847954 Msa0297180:exon 25.0%
! GATCAATAATAAAATGGGAA+AGG + chr2_3:50847968-50847987 Msa0297180:three_prime_UTR 25.0%
!!! AATTCTAGTTCATAACACAA+AGG - chr2_3:50848016-50848035 None:intergenic 25.0%
TGTTGTGTTTGTGTAATGAA+GGG - chr2_3:50843178-50843197 None:intergenic 30.0%
TTGTTGTGTTTGTGTAATGA+AGG - chr2_3:50843179-50843198 None:intergenic 30.0%
! TATATGCATTGAAGTGCTTA+AGG + chr2_3:50843228-50843247 Msa0297180:five_prime_UTR 30.0%
! GTATAATTTGCAACATTAGG+AGG + chr2_3:50843254-50843273 Msa0297180:five_prime_UTR 30.0%
!!! TTCACGAAAGGTATTTTCAA+AGG + chr2_3:50843328-50843347 Msa0297180:CDS 30.0%
GTTAAAACCAAATTCAACCT+TGG - chr2_3:50843681-50843700 None:intergenic 30.0%
AAAAGTGAAGACCAAAAGTT+GGG - chr2_3:50843712-50843731 None:intergenic 30.0%
AACTTGTAATATTTGTGCTG+TGG + chr2_3:50843738-50843757 Msa0297180:intron 30.0%
ACTTTACATCTTAATCACTG+TGG - chr2_3:50844201-50844220 None:intergenic 30.0%
TAAAACGCAATTGCATATGA+GGG - chr2_3:50844236-50844255 None:intergenic 30.0%
TTAAAACGCAATTGCATATG+AGG - chr2_3:50844237-50844256 None:intergenic 30.0%
!!! GTGTTTTGGCACATATATTA+TGG + chr2_3:50844778-50844797 Msa0297180:intron 30.0%
! ATCCTATTGCAAACTTTTCT+TGG - chr2_3:50844840-50844859 None:intergenic 30.0%
GTTCCATTTCAAAAATGTGT+TGG + chr2_3:50845025-50845044 Msa0297180:intron 30.0%
!! GAACCAACACATTTTTGAAA+TGG - chr2_3:50845031-50845050 None:intergenic 30.0%
TTTCCATTCCATTACCTAAA+TGG + chr2_3:50845311-50845330 Msa0297180:CDS 30.0%
TTCCATTCCATTACCTAAAT+GGG + chr2_3:50845312-50845331 Msa0297180:CDS 30.0%
CTATTGGTGTAAAAGATATC+AGG - chr2_3:50845361-50845380 None:intergenic 30.0%
! ATCTTTTACACCAATAGTTC+AGG + chr2_3:50845364-50845383 Msa0297180:CDS 30.0%
TACATGTAGATTGTAGAGTT+TGG - chr2_3:50845552-50845571 None:intergenic 30.0%
!!! GAAGAGTTTTAGAGAGAATA+TGG + chr2_3:50845834-50845853 Msa0297180:CDS 30.0%
ACATTAAATTCTCCAATACC+AGG - chr2_3:50845964-50845983 None:intergenic 30.0%
! GTTTTCAACACAATGTTATG+TGG - chr2_3:50846027-50846046 None:intergenic 30.0%
!! AAAAAGTGCTATCATACCAA+TGG + chr2_3:50846096-50846115 Msa0297180:intron 30.0%
!!! GTTCAGCAATTTTTTTGACT+AGG - chr2_3:50846129-50846148 None:intergenic 30.0%
!!! GTCGAAACTCTTTTTTGTTT+TGG - chr2_3:50846179-50846198 None:intergenic 30.0%
CTGAAAAATTCTGTAGATTC+AGG - chr2_3:50846398-50846417 None:intergenic 30.0%
!! TACAGAATTTTTCAGATCCA+AGG + chr2_3:50846403-50846422 Msa0297180:CDS 30.0%
!! ACAGAATTTTTCAGATCCAA+GGG + chr2_3:50846404-50846423 Msa0297180:CDS 30.0%
AAAATTTCCCTTTCTCTGTT+TGG - chr2_3:50846436-50846455 None:intergenic 30.0%
TCTAACAAATTGCTTACACA+TGG + chr2_3:50846470-50846489 Msa0297180:CDS 30.0%
GTTGTTAATGCAGTTCAAAT+TGG + chr2_3:50846628-50846647 Msa0297180:intron 30.0%
ATTTGATCACCTGAAAATTG+TGG - chr2_3:50846696-50846715 None:intergenic 30.0%
AGTTGAACACCTGAAAATTA+TGG + chr2_3:50846724-50846743 Msa0297180:intron 30.0%
!! TGGTTGACGAAGTTATTTTA+GGG + chr2_3:50846766-50846785 Msa0297180:intron 30.0%
!!! TTTTTTTTACGACCGAACTT+AGG - chr2_3:50846881-50846900 None:intergenic 30.0%
TACAACTTAAGTGATAGAGA+TGG + chr2_3:50847040-50847059 Msa0297180:CDS 30.0%
ATGTCTTGAGATGAGAAATT+CGG + chr2_3:50847117-50847136 Msa0297180:CDS 30.0%
GTCTAGCATTTAGAAGAATT+TGG - chr2_3:50847490-50847509 None:intergenic 30.0%
ATAATTCTTCTGTCAAACGT+AGG - chr2_3:50847568-50847587 None:intergenic 30.0%
!! TCATATTTGATGGTGTTTGA+AGG + chr2_3:50847676-50847695 Msa0297180:intron 30.0%
TGTTTGAAGGAACTAATCAA+AGG + chr2_3:50847689-50847708 Msa0297180:intron 30.0%
GTGTAATGATAGTATTTCTC+TGG - chr2_3:50847743-50847762 None:intergenic 30.0%
! TATTCTCAGTTTGCAACTTT+TGG - chr2_3:50848044-50848063 None:intergenic 30.0%
! GACGACGATTAATACTTTTG+AGG + chr2_3:50843305-50843324 Msa0297180:CDS 35.0%
!!! ATACTTTTGAGGTTCACGAA+AGG + chr2_3:50843316-50843335 Msa0297180:CDS 35.0%
! GCTTGCTTTGTTCTTGAATT+TGG - chr2_3:50843390-50843409 None:intergenic 35.0%
! AACATAATGTCCCCAACTTT+TGG + chr2_3:50843698-50843717 Msa0297180:intron 35.0%
AAAGTGAAGACCAAAAGTTG+GGG - chr2_3:50843711-50843730 None:intergenic 35.0%
GAAAAGTGAAGACCAAAAGT+TGG - chr2_3:50843713-50843732 None:intergenic 35.0%
TGTAATATTTGTGCTGTGGT+TGG + chr2_3:50843742-50843761 Msa0297180:intron 35.0%
CAATTCAGGAAATATGAGAG+AGG + chr2_3:50843817-50843836 Msa0297180:intron 35.0%
TCTCATAAGGATTCGGAATA+TGG - chr2_3:50843923-50843942 None:intergenic 35.0%
ATATTCCGAATCCTTATGAG+AGG + chr2_3:50843922-50843941 Msa0297180:intron 35.0%
ATACACCTCTCATAAGGATT+CGG - chr2_3:50843930-50843949 None:intergenic 35.0%
ATACACATACACCTCTCATA+AGG - chr2_3:50843936-50843955 None:intergenic 35.0%
GTCATGTGTCGAAAAACAAA+AGG + chr2_3:50844109-50844128 Msa0297180:intron 35.0%
AATTTGAAAAGGGAGGAAAG+AGG - chr2_3:50844486-50844505 None:intergenic 35.0%
AGAAAAATCTGTAGAGCAAG+AGG + chr2_3:50844744-50844763 Msa0297180:intron 35.0%
AGCCAAGAAAAGTTTGCAAT+AGG + chr2_3:50844835-50844854 Msa0297180:intron 35.0%
!! CAGTTTTGGTCATAAAATGC+AGG + chr2_3:50844885-50844904 Msa0297180:intron 35.0%
TCGTATGTTGAAGGAACAAT+TGG - chr2_3:50844913-50844932 None:intergenic 35.0%
ATTGGATCTTCGTATGTTGA+AGG - chr2_3:50844922-50844941 None:intergenic 35.0%
!! GGTACATAATTTGCTAGCAT+TGG - chr2_3:50844940-50844959 None:intergenic 35.0%
GATTACAAACGACAATGTCT+TGG + chr2_3:50845069-50845088 Msa0297180:CDS 35.0%
TGGGGTATAGTAGAATCAAA+GGG + chr2_3:50845169-50845188 Msa0297180:CDS 35.0%
! AGTATGATTGGTCAGCATAT+AGG + chr2_3:50845200-50845219 Msa0297180:CDS 35.0%
! ATATAGGTCCTTGTTTCAAC+TGG + chr2_3:50845216-50845235 Msa0297180:CDS 35.0%
! ATGTCATTTCATCAATGTGG+AGG + chr2_3:50845271-50845290 Msa0297180:CDS 35.0%
! TGTCATTTCATCAATGTGGA+GGG + chr2_3:50845272-50845291 Msa0297180:CDS 35.0%
!! TACCCATTTAGGTAATGGAA+TGG - chr2_3:50845317-50845336 None:intergenic 35.0%
TCAAGTACCCATTTAGGTAA+TGG - chr2_3:50845322-50845341 None:intergenic 35.0%
ATTCCTGATACCTGAACTAT+TGG - chr2_3:50845377-50845396 None:intergenic 35.0%
TAGTTCAGGTATCAGGAATA+AGG + chr2_3:50845378-50845397 Msa0297180:CDS 35.0%
GGAGTTCTTCCATTAAAGAA+AGG - chr2_3:50845433-50845452 None:intergenic 35.0%
GCTTATTAGCTAACCTGAAT+GGG - chr2_3:50845454-50845473 None:intergenic 35.0%
TGCTTATTAGCTAACCTGAA+TGG - chr2_3:50845455-50845474 None:intergenic 35.0%
ACATCAAAAACCTAGACATC+AGG - chr2_3:50845627-50845646 None:intergenic 35.0%
CTACTGATAGACATTGAAGT+AGG + chr2_3:50845877-50845896 Msa0297180:CDS 35.0%
ATAGACATTGAAGTAGGACT+TGG + chr2_3:50845883-50845902 Msa0297180:CDS 35.0%
GTGTTGAAAACAAATCGACT+CGG + chr2_3:50846036-50846055 Msa0297180:intron 35.0%
! TCTTCAAGCTGATTTCAAAG+AGG + chr2_3:50846307-50846326 Msa0297180:CDS 35.0%
TTAGATGACCCTGCATTATT+AGG - chr2_3:50846368-50846387 None:intergenic 35.0%
GAACTTACCAAACAGAGAAA+GGG + chr2_3:50846426-50846445 Msa0297180:CDS 35.0%
! TACACATGGTGATGAAATCT+TGG + chr2_3:50846484-50846503 Msa0297180:CDS 35.0%
GTTAATGCAGTTCAAATTGG+TGG + chr2_3:50846631-50846650 Msa0297180:intron 35.0%
! CTTCATTGACCACAATTTTC+AGG + chr2_3:50846684-50846703 Msa0297180:intron 35.0%
! CGACGTTAACCATAATTTTC+AGG - chr2_3:50846736-50846755 None:intergenic 35.0%
AACTTCGTCAACCACAAATT+TGG - chr2_3:50846760-50846779 None:intergenic 35.0%
!! GTGGTTGACGAAGTTATTTT+AGG + chr2_3:50846765-50846784 Msa0297180:intron 35.0%
!!! GGTTGACGAAGTTATTTTAG+GGG + chr2_3:50846767-50846786 Msa0297180:intron 35.0%
GTGGTTAACACAGTTCAAAT+AGG - chr2_3:50846836-50846855 None:intergenic 35.0%
!! TTTCAGTTTTATACCACCAG+TGG - chr2_3:50846991-50847010 None:intergenic 35.0%
TGATTTCGCGATGTTACATT+AGG - chr2_3:50847310-50847329 None:intergenic 35.0%
CTTCTAAATGCTAGACCAAA+TGG + chr2_3:50847494-50847513 Msa0297180:CDS 35.0%
!!! CATACATCCTTAGTTTTGGA+GGG - chr2_3:50847535-50847554 None:intergenic 35.0%
! ACTCCATACATCCTTAGTTT+TGG - chr2_3:50847539-50847558 None:intergenic 35.0%
GAAAAAGATGCATGCTAATC+AGG + chr2_3:50847625-50847644 Msa0297180:CDS 35.0%
AATCAAAGGTGAAATTCTGC+AGG + chr2_3:50847703-50847722 Msa0297180:intron 35.0%
!!! TTGGTTTTGACCTTTCCATA+GGG - chr2_3:50847769-50847788 None:intergenic 35.0%
!!! TTTGGTTTTGACCTTTCCAT+AGG - chr2_3:50847770-50847789 None:intergenic 35.0%
GTCAAAACCAAAGATTCCAT+CGG + chr2_3:50847778-50847797 Msa0297180:CDS 35.0%
AGAATATCCGATGGAATCTT+TGG - chr2_3:50847788-50847807 None:intergenic 35.0%
! ATATCCATGGTCTGAAGTAA+CGG + chr2_3:50847835-50847854 Msa0297180:CDS 35.0%
ATGAGTGTTAATGAAGCTAC+TGG + chr2_3:50847860-50847879 Msa0297180:CDS 35.0%
! AAAAAGGACACACTGACTGA+CGG + chr2_3:50843029-50843048 Msa0297180:five_prime_UTR 40.0%
!! CAGTGTTGGTTCTTCATTCA+TGG - chr2_3:50843091-50843110 None:intergenic 40.0%
ATAAGAGAAGTGGACAGTGT+TGG - chr2_3:50843105-50843124 None:intergenic 40.0%
CTATACGTGTAGATAGAGCA+AGG + chr2_3:50843361-50843380 Msa0297180:CDS 40.0%
GATAAAATGGTTACCTCTGC+AGG - chr2_3:50843501-50843520 None:intergenic 40.0%
CTCATATTTCCTGAATTGCG+TGG - chr2_3:50843815-50843834 None:intergenic 40.0%
! TCAGAGGAATATGGTTTGCA+CGG + chr2_3:50844156-50844175 Msa0297180:intron 40.0%
! AGGATGCATGTATGGTGTTT+TGG + chr2_3:50844764-50844783 Msa0297180:intron 40.0%
!! ACTGGGAGCATCACATATAT+AGG - chr2_3:50844961-50844980 None:intergenic 40.0%
AAAACTCGAGAAACAGCTGA+AGG + chr2_3:50845102-50845121 Msa0297180:CDS 40.0%
! ATGGAGTTATGGTTGATGTC+TGG + chr2_3:50845146-50845165 Msa0297180:CDS 40.0%
! AGTTATGGTTGATGTCTGGT+GGG + chr2_3:50845150-50845169 Msa0297180:CDS 40.0%
GTGGGGTATAGTAGAATCAA+AGG + chr2_3:50845168-50845187 Msa0297180:CDS 40.0%
ATCCTGAACCAGTTGAAACA+AGG - chr2_3:50845227-50845246 None:intergenic 40.0%
CATCAATGTGGAGGGAATAT+TGG + chr2_3:50845280-50845299 Msa0297180:CDS 40.0%
CCAACTTCAAGTACCCATTT+AGG - chr2_3:50845328-50845347 None:intergenic 40.0%
CCTAAATGGGTACTTGAAGT+TGG + chr2_3:50845325-50845344 Msa0297180:CDS 40.0%
ACACCAATAGTTCAGGTATC+AGG + chr2_3:50845371-50845390 Msa0297180:CDS 40.0%
! GGAATGTATTTCACTTGGTG+TGG + chr2_3:50845399-50845418 Msa0297180:CDS 40.0%
TAATGGAAGAACTCCCATTC+AGG + chr2_3:50845438-50845457 Msa0297180:CDS 40.0%
GATTGTGACACAGTCAAGTT+AGG + chr2_3:50845718-50845737 Msa0297180:intron 40.0%
CCTAGAGATTCTGCATAAGA+AGG - chr2_3:50845931-50845950 None:intergenic 40.0%
CCTTCTTATGCAGAATCTCT+AGG + chr2_3:50845928-50845947 Msa0297180:CDS 40.0%
TTATGCAGAATCTCTAGGCT+GGG + chr2_3:50845933-50845952 Msa0297180:CDS 40.0%
TTGACTAGGACAGATACCAT+TGG - chr2_3:50846115-50846134 None:intergenic 40.0%
GGAACTTACCAAACAGAGAA+AGG + chr2_3:50846425-50846444 Msa0297180:CDS 40.0%
! GAAGCCAACAAAGTATTCCT+AGG + chr2_3:50846509-50846528 Msa0297180:CDS 40.0%
GCAACCTAGGAATACTTTGT+TGG - chr2_3:50846516-50846535 None:intergenic 40.0%
CTAACTTCACTTTGCAACCT+AGG - chr2_3:50846529-50846548 None:intergenic 40.0%
GTTAACGTCGTCCAAATTTG+TGG + chr2_3:50846746-50846765 Msa0297180:intron 40.0%
! CTTTGGCGACAACTTTTAAG+TGG - chr2_3:50846855-50846874 None:intergenic 40.0%
ATTTGATTACAGGTCCTGAG+TGG + chr2_3:50847395-50847414 Msa0297180:intron 40.0%
TAACCTTCACTGTCATACCT+TGG - chr2_3:50847464-50847483 None:intergenic 40.0%
!!! CCATACATCCTTAGTTTTGG+AGG - chr2_3:50847536-50847555 None:intergenic 40.0%
CCTCCAAAACTAAGGATGTA+TGG + chr2_3:50847533-50847552 Msa0297180:CDS 40.0%
TGATAGTATTTCTCTGGGTC+TGG - chr2_3:50847737-50847756 None:intergenic 40.0%
CTATCATTACACAGTCCCTA+TGG + chr2_3:50847751-50847770 Msa0297180:CDS 40.0%
ATTACACAGTCCCTATGGAA+AGG + chr2_3:50847756-50847775 Msa0297180:CDS 40.0%
GCTTCAAGAAGAATATCCGA+TGG - chr2_3:50847797-50847816 None:intergenic 40.0%
GTTACTTCAGACCATGGATA+TGG - chr2_3:50847836-50847855 None:intergenic 40.0%
ATATCCGTTACTTCAGACCA+TGG - chr2_3:50847842-50847861 None:intergenic 40.0%
CAGACAACGTTCTGTGTCTT+TGG + chr2_3:50843446-50843465 Msa0297180:CDS 45.0%
! TATGGTTTGCACGGATTGAC+AGG + chr2_3:50844165-50844184 Msa0297180:intron 45.0%
! TTTGCACGGATTGACAGGTT+TGG + chr2_3:50844170-50844189 Msa0297180:intron 45.0%
AGAGCAAGAGGATGCATGTA+TGG + chr2_3:50844756-50844775 Msa0297180:intron 45.0%
!! AGCAGGTGTTGATGGAGTTA+TGG + chr2_3:50845135-50845154 Msa0297180:CDS 45.0%
! GAGTTATGGTTGATGTCTGG+TGG + chr2_3:50845149-50845168 Msa0297180:CDS 45.0%
! GTTATGGTTGATGTCTGGTG+GGG + chr2_3:50845151-50845170 Msa0297180:CDS 45.0%
! GTCCTTGTTTCAACTGGTTC+AGG + chr2_3:50845222-50845241 Msa0297180:CDS 45.0%
AGACATCAGGACCTCAAATG+CGG - chr2_3:50845614-50845633 None:intergenic 45.0%
! CATTTGAGGTCCTGATGTCT+AGG + chr2_3:50845614-50845633 Msa0297180:intron 45.0%
GATATCTGAGTTCTCCAGCA+GGG - chr2_3:50845909-50845928 None:intergenic 45.0%
CTTATGCAGAATCTCTAGGC+TGG + chr2_3:50845932-50845951 Msa0297180:CDS 45.0%
GATACTCTTCAACGTTGCAG+CGG - chr2_3:50846151-50846170 None:intergenic 45.0%
TTATTAGGCAGCTCCCATTC+AGG - chr2_3:50846353-50846372 None:intergenic 45.0%
CTCTGTTTGGTAAGTTCCCT+TGG - chr2_3:50846423-50846442 None:intergenic 45.0%
TCGCCAAAGTAGCCTAAGTT+CGG + chr2_3:50846866-50846885 Msa0297180:intron 45.0%
AACAGATTGCTGGAATCCAC+TGG + chr2_3:50846972-50846991 Msa0297180:intron 45.0%
!!! GCACAACTTTTGGCTTCTTC+TGG - chr2_3:50847148-50847167 None:intergenic 45.0%
! AAGTTCCTGCGCACAACTTT+TGG - chr2_3:50847158-50847177 None:intergenic 45.0%
AGAGAGAACCTTGAAGTTGC+TGG + chr2_3:50847425-50847444 Msa0297180:CDS 45.0%
GAGAGAACCTTGAAGTTGCT+GGG + chr2_3:50847426-50847445 Msa0297180:CDS 45.0%
AGAGAACCTTGAAGTTGCTG+GGG + chr2_3:50847427-50847446 Msa0297180:CDS 45.0%
! CATTTTCCCCAGCAACTTCA+AGG - chr2_3:50847436-50847455 None:intergenic 45.0%
CTTCCAAGGTATGACAGTGA+AGG + chr2_3:50847458-50847477 Msa0297180:CDS 45.0%
AAGCAGTGAAGCCATATCCA+TGG + chr2_3:50847822-50847841 Msa0297180:CDS 45.0%
!!! GATTATTTTTATAATATATA+TGG - chr2_3:50843151-50843170 None:intergenic 5.0%
!! AAAACAAAAAAATAAAATAA+AGG - chr2_3:50844285-50844304 None:intergenic 5.0%
!!! AAAGATAAATATTTTTTTTA+AGG - chr2_3:50844397-50844416 None:intergenic 5.0%
TGCAATTGCTGAACCTGCAG+AGG + chr2_3:50843485-50843504 Msa0297180:CDS 50.0%
!! TGGTTGGTGTTGTGAGTGAG+AGG + chr2_3:50843758-50843777 Msa0297180:intron 50.0%
TGAGAGGATGAAACCACCCA+CGG + chr2_3:50843774-50843793 Msa0297180:intron 50.0%
GACCACTCAAATAACCCCGT+GGG - chr2_3:50843793-50843812 None:intergenic 50.0%
TTGAGTGGTCCACGCAATTC+AGG + chr2_3:50843803-50843822 Msa0297180:intron 50.0%
CGTTTGTAATCACCCCTAGC+TGG - chr2_3:50845060-50845079 None:intergenic 50.0%
AGGGTCCTCAGCAGTATGAT+TGG + chr2_3:50845188-50845207 Msa0297180:CDS 50.0%
GCTGACCAATCATACTGCTG+AGG - chr2_3:50845196-50845215 None:intergenic 50.0%
GGCTGATGAGACTGCAATTG+AGG - chr2_3:50845667-50845686 None:intergenic 50.0%
GGATATCTGAGTTCTCCAGC+AGG - chr2_3:50845910-50845929 None:intergenic 50.0%
TCTCTAGGCTGGGTATTTCC+TGG + chr2_3:50845943-50845962 Msa0297180:CDS 50.0%
GGCTGGGTATTTCCTGGTAT+TGG + chr2_3:50845949-50845968 Msa0297180:CDS 50.0%
! TGTTTGCTGCTCCATGAGAG+AGG - chr2_3:50846064-50846083 None:intergenic 50.0%
AAAGAGGCTGCAACAAGAGC+AGG + chr2_3:50846323-50846342 Msa0297180:CDS 50.0%
AAGAGCAGGCCATCCTGAAT+GGG + chr2_3:50846337-50846356 Msa0297180:CDS 50.0%
TGGGAGCTGCCTAATAATGC+AGG + chr2_3:50846356-50846375 Msa0297180:CDS 50.0%
GGGAGCTGCCTAATAATGCA+GGG + chr2_3:50846357-50846376 Msa0297180:CDS 50.0%
CGACCGAACTTAGGCTACTT+TGG - chr2_3:50846872-50846891 None:intergenic 50.0%
AGATTGCTGGAATCCACTGG+TGG + chr2_3:50846975-50846994 Msa0297180:intron 50.0%
CTGAAGTAAGCTCTGCAGCA+TGG - chr2_3:50847015-50847034 None:intergenic 50.0%
CATGCTGCAGAGCTTACTTC+AGG + chr2_3:50847013-50847032 Msa0297180:CDS 50.0%
AGAAGCCAAAAGTTGTGCGC+AGG + chr2_3:50847150-50847169 Msa0297180:CDS 50.0%
TGATTACAGGTCCTGAGTGG+AGG + chr2_3:50847398-50847417 Msa0297180:intron 50.0%
GATTACAGGTCCTGAGTGGA+GGG + chr2_3:50847399-50847418 Msa0297180:intron 50.0%
CTGGGGAAAATGCACTTCCA+AGG + chr2_3:50847444-50847463 Msa0297180:CDS 50.0%
GAGAGGATGAAACCACCCAC+GGG + chr2_3:50843775-50843794 Msa0297180:intron 55.0%
AGAGGATGAAACCACCCACG+GGG + chr2_3:50843776-50843795 Msa0297180:intron 55.0%
CACTCAAATAACCCCGTGGG+TGG - chr2_3:50843790-50843809 None:intergenic 55.0%
CACCCACGGGGTTATTTGAG+TGG + chr2_3:50843788-50843807 Msa0297180:intron 55.0%
GGACCACTCAAATAACCCCG+TGG - chr2_3:50843794-50843813 None:intergenic 55.0%
TTGGTTCCTCCTGCCAGCTA+GGG + chr2_3:50845044-50845063 Msa0297180:intron 55.0%
TGTAATCACCCCTAGCTGGC+AGG - chr2_3:50845056-50845075 None:intergenic 55.0%
!! CTACGAGCAGCAGGTGTTGA+TGG + chr2_3:50845127-50845146 Msa0297180:CDS 55.0%
TGCAAGCGCAACCGCATTTG+AGG + chr2_3:50845600-50845619 Msa0297180:intron 55.0%
!! TCGACTCGGATCCTCTCTCA+TGG + chr2_3:50846050-50846069 Msa0297180:intron 55.0%
CAAGAGCAGGCCATCCTGAA+TGG + chr2_3:50846336-50846355 Msa0297180:CDS 55.0%
TAGGCAGCTCCCATTCAGGA+TGG - chr2_3:50846349-50846368 None:intergenic 55.0%
TAGAGATGGATACCGTCCCG+TGG + chr2_3:50847054-50847073 Msa0297180:CDS 55.0%
TCGAGCGAACATCCTTGCCA+CGG - chr2_3:50847074-50847093 None:intergenic 55.0%
! TGCGCAGGAACTTGTTCAGC+AGG + chr2_3:50847165-50847184 Msa0297180:CDS 55.0%
! GTTGGTTCCTCCTGCCAGCT+AGG + chr2_3:50845043-50845062 Msa0297180:intron 60.0%
TGGTTCCTCCTGCCAGCTAG+GGG + chr2_3:50845045-50845064 Msa0297180:intron 60.0%
AATCACCCCTAGCTGGCAGG+AGG - chr2_3:50845053-50845072 None:intergenic 60.0%
CTGAAGGAGCTACGAGCAGC+AGG + chr2_3:50845118-50845137 Msa0297180:CDS 60.0%
GAAGTAGGACTTGGCCCTGC+TGG + chr2_3:50845892-50845911 Msa0297180:CDS 60.0%
ATGGATACCGTCCCGTGGCA+AGG + chr2_3:50847059-50847078 Msa0297180:CDS 60.0%
CGAACATCCTTGCCACGGGA+CGG - chr2_3:50847069-50847088 None:intergenic 60.0%
CGAGCGAACATCCTTGCCAC+GGG - chr2_3:50847073-50847092 None:intergenic 60.0%
TACAGGTCCTGAGTGGAGGG+TGG + chr2_3:50847402-50847421 Msa0297180:intron 60.0%
TCTCTCTCCACCCTCCACTC+AGG - chr2_3:50847412-50847431 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50843027 50848096 50843027 ID=Msa0297180;Name=Msa0297180
chr2_3 mRNA 50843027 50848096 50843027 ID=Msa0297180-mRNA-1;Parent=Msa0297180;Name=Msa0297180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=273|1|1|1|1|1|8|156|590
chr2_3 exon 50843027 50843506 50843027 ID=Msa0297180-mRNA-1:exon:15986;Parent=Msa0297180-mRNA-1
chr2_3 exon 50844907 50844978 50844907 ID=Msa0297180-mRNA-1:exon:15987;Parent=Msa0297180-mRNA-1
chr2_3 exon 50845061 50845459 50845061 ID=Msa0297180-mRNA-1:exon:15988;Parent=Msa0297180-mRNA-1
chr2_3 exon 50845817 50845981 50845817 ID=Msa0297180-mRNA-1:exon:15989;Parent=Msa0297180-mRNA-1
chr2_3 exon 50846293 50846556 50846293 ID=Msa0297180-mRNA-1:exon:15990;Parent=Msa0297180-mRNA-1
chr2_3 exon 50846977 50847186 50846977 ID=Msa0297180-mRNA-1:exon:15991;Parent=Msa0297180-mRNA-1
chr2_3 exon 50847407 50847646 50847407 ID=Msa0297180-mRNA-1:exon:15992;Parent=Msa0297180-mRNA-1
chr2_3 exon 50847725 50848096 50847725 ID=Msa0297180-mRNA-1:exon:15993;Parent=Msa0297180-mRNA-1
chr2_3 five_prime_UTR 50843027 50843299 50843027 ID=Msa0297180-mRNA-1:five_prime_utr;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50843300 50843506 50843300 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50844907 50844978 50844907 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50845061 50845459 50845061 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50845817 50845981 50845817 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50846293 50846556 50846293 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50846977 50847186 50846977 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50847407 50847646 50847407 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 CDS 50847725 50847940 50847725 ID=Msa0297180-mRNA-1:cds;Parent=Msa0297180-mRNA-1
chr2_3 three_prime_UTR 50847941 50848096 50847941 ID=Msa0297180-mRNA-1:three_prime_utr;Parent=Msa0297180-mRNA-1
Gene Sequence

>Msa0297180

ATGAGGACGACGATTAATACTTTTGAGGTTCACGAAAGGTATTTTCAAAGGAGTAACGAAGCTATACGTGTAGATAGAGCAAGGAAGCCAAATTCAAGAACAAAGCAAGCCTTCAAATTTGATAATATTCATCGTGCTTCTGTCAACAGACAACGTTCTGTGTCTTTGGCAGAATTCAAAGCTTCTGCAATTGCTGAACCTGCAGAGGCACCAATTGTTCCTTCAACATACGAAGATCCAATGCTAGCAAATTATGTACCTATATATGTGATGCTCCCACTAGGGGTGATTACAAACGACAATGTCTTGGACGATAGAGCAAAACTCGAGAAACAGCTGAAGGAGCTACGAGCAGCAGGTGTTGATGGAGTTATGGTTGATGTCTGGTGGGGTATAGTAGAATCAAAGGGTCCTCAGCAGTATGATTGGTCAGCATATAGGTCCTTGTTTCAACTGGTTCAGGATTGCAAACTTAAGTTACAAGCTATAATGTCATTTCATCAATGTGGAGGGAATATTGGAGATTCTGTTTCCATTCCATTACCTAAATGGGTACTTGAAGTTGGTGAATCAAATCCTGATATCTTTTACACCAATAGTTCAGGTATCAGGAATAAGGAATGTATTTCACTTGGTGTGGATAATAAACCTTTCTTTAATGGAAGAACTCCCATTCAGATGTATAGCGACTATATGAAGAGTTTTAGAGAGAATATGGCAGATTTCTTAGAATCTGAGCTACTGATAGACATTGAAGTAGGACTTGGCCCTGCTGGAGAACTCAGATATCCTTCTTATGCAGAATCTCTAGGCTGGGTATTTCCTGGTATTGGAGAATTTAATTGCTATGACAAATATCTTCAAGCTGATTTCAAAGAGGCTGCAACAAGAGCAGGCCATCCTGAATGGGAGCTGCCTAATAATGCAGGGTCATCTAATGACACACCTGAATCTACAGAATTTTTCAGATCCAAGGGAACTTACCAAACAGAGAAAGGGAAATTTTTTCTTACATGGTATTCTAACAAATTGCTTACACATGGTGATGAAATCTTGGATGAAGCCAACAAAGTATTCCTAGGTTGCAAAGTGAAGTTAGCAGCAAAAATTGCTGGAATCCACTGGTGGTATAAAACTGAAAGCCATGCTGCAGAGCTTACTTCAGGATATTACAACTTAAGTGATAGAGATGGATACCGTCCCGTGGCAAGGATGTTCGCTCGACATAATGCTATATTGAATTTCACATGTCTTGAGATGAGAAATTCGGAGCAACCAGAAGAAGCCAAAAGTTGTGCGCAGGAACTTGTTCAGCAGGTCCTGAGTGGAGGGTGGAGAGAGAACCTTGAAGTTGCTGGGGAAAATGCACTTCCAAGGTATGACAGTGAAGGTTACAACCAAATTCTTCTAAATGCTAGACCAAATGGTGTTAACAAAAAGGGCCCTCCAAAACTAAGGATGTATGGAGTCACATACCTACGTTTGACAGAAGAATTATTCCAGAAACAAAATTTTGATATATTCAAAATCTTTGTGAAAAAGATGCATGCTAATCAGGATCTCTGTCCAGACCCAGAGAAATACTATCATTACACAGTCCCTATGGAAAGGTCAAAACCAAAGATTCCATCGGATATTCTTCTTGAAGCAACAAAAGCAGTGAAGCCATATCCATGGTCTGAAGTAACGGATATGAGTGTTAATGAAGCTACTGGATTTTTCGCTGATTTAATAGCAATAATCTTGAGTGTGTTTAGAAGAAACCGAAACTGA

Protein sequence

>Msa0297180

MRTTINTFEVHERYFQRSNEAIRVDRARKPNSRTKQAFKFDNIHRASVNRQRSVSLAEFKASAIAEPAEAPIVPSTYEDPMLANYVPIYVMLPLGVITNDNVLDDRAKLEKQLKELRAAGVDGVMVDVWWGIVESKGPQQYDWSAYRSLFQLVQDCKLKLQAIMSFHQCGGNIGDSVSIPLPKWVLEVGESNPDIFYTNSSGIRNKECISLGVDNKPFFNGRTPIQMYSDYMKSFRENMADFLESELLIDIEVGLGPAGELRYPSYAESLGWVFPGIGEFNCYDKYLQADFKEAATRAGHPEWELPNNAGSSNDTPESTEFFRSKGTYQTEKGKFFLTWYSNKLLTHGDEILDEANKVFLGCKVKLAAKIAGIHWWYKTESHAAELTSGYYNLSDRDGYRPVARMFARHNAILNFTCLEMRNSEQPEEAKSCAQELVQQVLSGGWRENLEVAGENALPRYDSEGYNQILLNARPNGVNKKGPPKLRMYGVTYLRLTEELFQKQNFDIFKIFVKKMHANQDLCPDPEKYYHYTVPMERSKPKIPSDILLEATKAVKPYPWSEVTDMSVNEATGFFADLIAIILSVFRRNRN*