AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677460 MtrunA17_Chr4g0021981 99.729 369 1 0 1 369 1 369 0.0 768
Msa0677460 MtrunA17_Chr4g0022021 86.450 369 50 0 1 369 1 369 0.0 679
Msa0677460 MtrunA17_Chr3g0121301 39.412 340 195 6 31 366 27 359 3.18e-84 260
Msa0677460 MtrunA17_Chr5g0432251 41.595 351 193 7 25 368 14 359 2.12e-83 258
Msa0677460 MtrunA17_Chr5g0432301 38.968 349 203 6 25 367 15 359 3.81e-80 249
Msa0677460 MtrunA17_Chr5g0432241 38.567 363 206 8 18 368 3 360 3.04e-75 237
Msa0677460 MtrunA17_Chr7g0276401 40.805 348 184 11 15 349 18 356 1.07e-73 233
Msa0677460 MtrunA17_Chr7g0276411 37.209 344 193 12 22 349 7 343 4.64e-71 226
Msa0677460 MtrunA17_Chr5g0432211 37.356 348 198 7 25 368 14 345 5.68e-68 218
Msa0677460 MtrunA17_Chr5g0432261 37.249 349 183 7 25 368 10 327 4.71e-67 214
Msa0677460 MtrunA17_Chr3g0128011 36.145 332 198 9 44 367 90 415 8.90e-67 217
Msa0677460 MtrunA17_Chr5g0448091 38.838 327 172 11 44 354 35 349 9.59e-67 215
Msa0677460 MtrunA17_Chr4g0040621 35.655 359 200 8 25 368 27 369 3.44e-66 214
Msa0677460 MtrunA17_Chr1g0188391 36.212 359 213 9 20 368 9 361 2.21e-65 211
Msa0677460 MtrunA17_Chr8g0345851 46.341 246 123 6 107 349 32 271 6.63e-65 208
Msa0677460 MtrunA17_Chr8g0367491 36.152 343 194 12 34 358 33 368 1.07e-64 210
Msa0677460 MtrunA17_Chr7g0219161 37.283 346 199 8 18 354 7 343 6.74e-63 205
Msa0677460 MtrunA17_Chr8g0367441 35.817 349 202 11 16 349 17 358 1.16e-62 205
Msa0677460 MtrunA17_Chr7g0219141 33.858 381 215 10 1 368 1 357 3.90e-60 197
Msa0677460 MtrunA17_Chr8g0367451 34.493 345 206 10 20 353 26 361 2.44e-59 196
Msa0677460 MtrunA17_Chr7g0223231 33.526 346 218 7 23 365 11 347 1.33e-58 193
Msa0677460 MtrunA17_Chr8g0367501 35.191 341 201 11 20 349 13 344 2.03e-58 195
Msa0677460 MtrunA17_Chr7g0223241 34.018 341 213 6 28 365 16 347 6.37e-58 192
Msa0677460 MtrunA17_Chr4g0046361 32.967 364 232 8 13 368 2 361 8.15e-58 192
Msa0677460 MtrunA17_Chr4g0014641 34.247 365 226 8 14 368 3 363 1.14e-56 189
Msa0677460 MtrunA17_Chr1g0188371 35.015 337 206 9 20 348 9 340 3.31e-56 188
Msa0677460 MtrunA17_Chr8g0367381 34.337 332 180 10 19 336 19 326 1.42e-55 185
Msa0677460 MtrunA17_Chr4g0046531 34.000 350 222 7 23 368 374 718 2.79e-55 192
Msa0677460 MtrunA17_Chr4g0046531 33.524 349 223 7 23 367 12 355 3.24e-54 190
Msa0677460 MtrunA17_Chr4g0014561 34.819 359 220 8 20 368 9 363 5.53e-54 182
Msa0677460 MtrunA17_Chr4g0046341 34.511 368 224 9 13 368 2 364 2.72e-53 180
Msa0677460 MtrunA17_Chr4g0014681 34.540 359 221 8 20 368 9 363 2.80e-53 180
Msa0677460 MtrunA17_Chr3g0085211 34.579 321 196 10 43 355 42 356 3.29e-51 175
Msa0677460 MtrunA17_Chr7g0218301 35.758 330 187 10 43 355 40 361 8.73e-51 174
Msa0677460 MtrunA17_Chr2g0307521 35.514 321 186 10 44 352 35 346 1.68e-50 172
Msa0677460 MtrunA17_Chr7g0218271 36.474 329 184 10 44 355 41 361 6.28e-50 171
Msa0677460 MtrunA17_Chr1g0200491 34.985 323 192 8 44 354 41 357 1.36e-49 171
Msa0677460 MtrunA17_Chr7g0218211 35.077 325 191 11 43 355 39 355 2.24e-49 170
Msa0677460 MtrunA17_Chr1g0163621 33.333 324 196 11 44 354 52 368 2.42e-49 170
Msa0677460 MtrunA17_Chr7g0218261 34.985 323 193 11 43 355 39 354 2.40e-48 167
Msa0677460 MtrunA17_Chr1g0163611 32.743 339 206 12 44 367 38 369 3.30e-48 167
Msa0677460 MtrunA17_Chr3g0130011 32.022 356 229 9 16 365 7 355 6.36e-48 166
Msa0677460 MtrunA17_Chr1g0163601 33.642 324 195 11 44 354 38 354 9.36e-48 166
Msa0677460 MtrunA17_Chr7g0218181 33.951 324 191 11 44 355 41 353 3.77e-47 164
Msa0677460 MtrunA17_Chr3g0085201 32.500 320 202 9 44 355 30 343 8.11e-47 163
Msa0677460 MtrunA17_Chr2g0314271 33.739 329 207 9 43 365 28 351 1.16e-46 162
Msa0677460 MtrunA17_Chr7g0218131 34.056 323 193 10 44 354 41 355 1.46e-46 162
Msa0677460 MtrunA17_Chr4g0014661 32.507 363 229 8 14 368 3 357 3.32e-46 161
Msa0677460 MtrunA17_Chr3g0130061 31.373 357 230 10 16 365 7 355 1.27e-44 157
Msa0677460 MtrunA17_Chr4g0014591 31.944 360 235 7 14 368 3 357 1.17e-42 152
Msa0677460 MtrunA17_Chr6g0482291 42.857 161 81 4 190 349 7 157 3.87e-37 132
Msa0677460 MtrunA17_Chr8g0367401 49.091 110 55 1 161 270 2 110 3.79e-30 112
Msa0677460 MtrunA17_Chr7g0219171 42.537 134 72 3 238 368 117 248 1.31e-29 114
Msa0677460 MtrunA17_Chr4g0014601 30.651 261 177 4 14 273 3 260 3.31e-29 114
Msa0677460 MtrunA17_Chr4g0011691 46.875 96 51 0 272 367 140 235 2.05e-26 105
Msa0677460 MtrunA17_Chr4g0011691 42.105 76 40 1 21 96 17 88 6.12e-12 65.1
Msa0677460 MtrunA17_Chr8g0367461 46.316 95 47 3 257 349 1 93 5.75e-20 84.3
Msa0677460 MtrunA17_Chr1g0170941 53.333 75 34 1 193 267 2 75 2.16e-19 81.6
Msa0677460 MtrunA17_Chr8g0367421 40.000 110 48 2 161 270 2 93 6.29e-18 79.3
Msa0677460 MtrunA17_Chr8g0367391 46.512 86 42 4 266 349 32 115 3.88e-17 77.4
Msa0677460 MtrunA17_Chr8g0367471 42.105 76 43 1 184 259 1 75 7.06e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677460 AT5G54160.1 38.318 321 185 7 42 355 34 348 2.11e-72 230
Msa0677460 AT4G35160.1 34.254 362 217 6 22 367 24 380 9.53e-66 213
Msa0677460 AT1G77520.1 36.240 367 211 10 17 365 17 378 1.87e-64 210
Msa0677460 AT1G51990.1 32.787 366 222 12 16 368 8 362 7.01e-57 189
Msa0677460 AT4G35150.1 30.056 356 197 7 22 367 10 323 1.60e-56 187
Msa0677460 AT1G33030.1 36.760 321 186 11 44 354 23 336 2.26e-55 185
Msa0677460 AT1G63140.2 34.903 361 212 10 11 355 15 368 6.19e-55 185
Msa0677460 AT1G63140.4 34.903 361 212 10 11 355 35 388 1.15e-54 185
Msa0677460 AT1G51990.2 32.514 366 223 12 16 368 8 362 1.41e-54 184
Msa0677460 AT1G77530.1 35.870 368 213 11 16 365 16 378 1.75e-54 184
Msa0677460 AT5G53810.1 34.694 343 196 10 44 369 42 373 5.55e-52 177
Msa0677460 AT3G53140.1 33.618 351 215 10 27 365 12 356 2.88e-49 170
Msa0677460 AT1G62900.1 45.026 191 101 3 167 355 4 192 7.17e-48 161
Msa0677460 AT5G37170.2 36.052 233 142 5 138 365 1 231 1.42e-45 156
Msa0677460 AT1G21130.1 35.207 338 197 13 44 367 42 371 2.26e-45 160
Msa0677460 AT1G21100.1 35.207 338 197 12 44 367 42 371 4.55e-45 159
Msa0677460 AT5G37170.1 32.792 308 176 10 63 365 50 331 7.80e-45 157
Msa0677460 AT1G21120.1 34.320 338 200 12 44 367 42 371 1.37e-43 155
Msa0677460 AT1G21110.1 33.728 338 202 12 44 367 42 371 2.78e-43 154
Msa0677460 AT1G21120.2 34.320 338 200 12 44 367 90 419 3.36e-43 155
Msa0677460 AT1G76790.1 35.258 329 188 12 44 355 32 352 4.64e-41 148
Msa0677460 AT5G37170.3 39.560 182 105 4 187 365 4 183 1.39e-40 142
Msa0677460 AT1G33030.2 35.745 235 138 8 44 270 23 252 8.01e-31 118
Msa0677460 AT1G33030.3 35.745 235 138 8 44 270 23 252 1.54e-30 118
Msa0677460 AT1G63140.1 31.022 274 169 8 11 270 35 302 8.91e-27 108
Msa0677460 AT1G21130.2 33.054 239 142 9 44 270 42 274 4.55e-21 92.4
Msa0677460 AT1G63140.3 28.916 249 157 8 11 245 35 277 5.12e-17 80.9
Msa0677460 AT1G77530.2 30.800 250 153 9 16 249 16 261 2.15e-15 75.9

Find 262 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATTTCTAAGACTTAT+TGG 0.112567 4_4:-31331067 None:intergenic
CATCAACCAAAGACTTAATT+TGG 0.166048 4_4:-31337690 None:intergenic
CAATATAAAATTAAAGAAAT+TGG 0.177243 4_4:+31338665 Msa0677460:three_prime_UTR
AACTTTATGATTTGTTAAAA+AGG 0.201956 4_4:-31333022 None:intergenic
ATCATAAGTTTGTTGGATTC+TGG 0.202613 4_4:-31330418 None:intergenic
TTTCTAGGAATATTTGAATT+AGG 0.216913 4_4:-31329965 None:intergenic
AGGGCCATTGAATCTTTATA+TGG 0.217360 4_4:-31331511 None:intergenic
CTTCTGCCACATCATCATTT+TGG 0.219473 4_4:-31332830 None:intergenic
GTTACAAACCTCAAACTTAA+AGG 0.224806 4_4:+31332922 Msa0677460:five_prime_UTR
GTAAATGGTTCATTTCCTTC+TGG 0.225351 4_4:-31338135 None:intergenic
TAATGGCATGGTGCCATTAA+TGG 0.244784 4_4:+31332572 Msa0677460:five_prime_UTR
ACACACATTCTTTCTAGTTT+TGG 0.254014 4_4:-31330032 None:intergenic
TGCTTGGACAAATTGAAATA+TGG 0.256837 4_4:+31337152 Msa0677460:CDS
CTCAAACACAATTTCTAAAA+AGG 0.257836 4_4:-31331345 None:intergenic
AGTAAAGGGGATTGCTCTTT+AGG 0.258371 4_4:-31331833 None:intergenic
CCAATCTATAAACTGATTTC+AGG 0.259031 4_4:+31331630 Msa0677460:five_prime_UTR
AATAATTTCACTACAATATA+GGG 0.265752 4_4:-31332294 None:intergenic
GTTTAACCAAATTAAGTCTT+TGG 0.272207 4_4:+31337684 Msa0677460:CDS
CAATACTTGGGTGCCATTAA+TGG 0.275774 4_4:+31332465 Msa0677460:five_prime_UTR
CAATAATTTCACTACAATAT+AGG 0.281093 4_4:-31332295 None:intergenic
CTATATTGTAGTGAAATTAT+TGG 0.282100 4_4:+31332296 Msa0677460:five_prime_UTR
TAATGGCACGGTGCCATTAA+TGG 0.294339 4_4:-31332478 None:intergenic
TTTCCTTTACCACTACAATT+TGG 0.295175 4_4:-31333154 None:intergenic
TGGGTGATACCATCAAAATT+AGG 0.296621 4_4:-31337811 None:intergenic
TTACAGCTGTTGTCTACTTC+TGG 0.297306 4_4:+31329884 None:intergenic
TTATCATGCACAATGGATTA+AGG 0.298175 4_4:-31332173 None:intergenic
AAAATGGCACTGCTTTCTTT+AGG 0.298524 4_4:+31337536 Msa0677460:CDS
TAGCACATGTGTGCCATATA+TGG 0.303651 4_4:-31332329 None:intergenic
CCAATCCAACACACCTGAAT+TGG 0.303915 4_4:+31333365 Msa0677460:five_prime_UTR
GCTATCCCAGTGTCGGTAAA+TGG 0.307296 4_4:-31338150 None:intergenic
CTCACCACCTTCTGCCTTCA+AGG 0.309125 4_4:+31333477 Msa0677460:CDS
ATGTTGGACAACCTGTTATC+AGG 0.312092 4_4:-31331301 None:intergenic
CACCTCATAAACCAGTTCTA+TGG 0.312611 4_4:-31331107 None:intergenic
GGGTGATACCATCAAAATTA+GGG 0.318382 4_4:-31337810 None:intergenic
GCAACTATGTAGATTTGTTT+TGG 0.320400 4_4:-31331921 None:intergenic
GAAATGCCACTAAAGTTTCT+AGG 0.321192 4_4:-31329980 None:intergenic
AAATAAGGCCTGTTACTAAC+AGG 0.323337 4_4:-31331531 None:intergenic
GCTTGACACGTGCATCAAAA+TGG 0.327202 4_4:+31337404 Msa0677460:CDS
TGGCACTTTGGTGCCATTAA+TGG 0.330106 4_4:-31332585 None:intergenic
ATTGAATCTTTATATGGGTT+TGG 0.330328 4_4:-31331505 None:intergenic
TAAATGGTTCATTTCCTTCT+GGG 0.333897 4_4:-31338134 None:intergenic
TTGTGTTGTGTGGCTTTACT+TGG 0.351030 4_4:+31338387 Msa0677460:three_prime_UTR
CCAATTCAGGTGTGTTGGAT+TGG 0.351528 4_4:-31333365 None:intergenic
TATAGGAGCAGAGAAAGTTT+TGG 0.352374 4_4:-31330079 None:intergenic
TAGCAAAATCATAAGTTTGT+TGG 0.353307 4_4:-31330425 None:intergenic
ATATATAGTTAAAGTGTGTT+TGG 0.356196 4_4:-31331975 None:intergenic
TGGAGGTCTATGTCCATATA+TGG 0.356655 4_4:+31332316 Msa0677460:five_prime_UTR
AATATTCCTAGAAACTTTAG+TGG 0.357963 4_4:+31329974 Msa0677460:five_prime_UTR
CATGTTATCATGTGAGTAAA+GGG 0.359886 4_4:-31331847 None:intergenic
CTTAAAAGTAGAGTGGAATC+AGG 0.364299 4_4:-31337310 None:intergenic
ATTCTGCACAATTTGAGTTA+AGG 0.365186 4_4:-31337269 None:intergenic
ATTTATGTGTTCACTTCAAA+AGG 0.367092 4_4:-31330465 None:intergenic
CCAATAAGTCTTAGAAATCA+TGG 0.367770 4_4:+31331067 Msa0677460:five_prime_UTR
TGGCACCATGCCATTAAATC+AGG 0.370412 4_4:-31332565 None:intergenic
GCAATTAGAGAGTTAATTTG+AGG 0.370896 4_4:-31333067 None:intergenic
ACCATGGGTCTTTAAGTTTG+TGG 0.374888 4_4:-31332990 None:intergenic
AATGTGTGGCCCTGATTTAA+TGG 0.377662 4_4:+31332555 Msa0677460:five_prime_UTR
CCTGAAATCAGTTTATAGAT+TGG 0.379881 4_4:-31331630 None:intergenic
TTGAATCAGAATTAGTATAG+TGG 0.385292 4_4:-31329910 None:intergenic
GAACAAGAGTGTACAAATAT+AGG 0.385989 4_4:+31331480 Msa0677460:five_prime_UTR
GGCAGAAGGTGGTGAGTGTT+TGG 0.386189 4_4:-31333470 None:intergenic
ATATAACTTCTTTAAGTTTG+AGG 0.389465 4_4:+31332720 Msa0677460:five_prime_UTR
TGACAATTTGTTTATAAGTT+GGG 0.390146 4_4:-31331138 None:intergenic
GTTTGAGGTTTGTAATAGAT+TGG 0.395060 4_4:+31332684 Msa0677460:five_prime_UTR
GTGTCGAGGGCTGTTATTGC+TGG 0.396054 4_4:+31337649 Msa0677460:CDS
CTCCCATTCATAGTTGGTAT+AGG 0.397722 4_4:-31330096 None:intergenic
CATTACATCCTGGCCATTGA+TGG 0.398345 4_4:+31332496 Msa0677460:five_prime_UTR
CTGACAATTTGTTTATAAGT+TGG 0.398449 4_4:-31331139 None:intergenic
TATATAGTTAAAGTGTGTTT+GGG 0.405418 4_4:-31331974 None:intergenic
CTATATTTAATTACAGATGA+TGG 0.408222 4_4:+31330750 Msa0677460:five_prime_UTR
TTATAGAGTCTGGATATAAA+TGG 0.411751 4_4:+31331257 Msa0677460:five_prime_UTR
ACAATTTGAGTTAAGGATAG+TGG 0.413559 4_4:-31337262 None:intergenic
ATTAGTGAAATTATAAAAGA+AGG 0.414681 4_4:+31337508 Msa0677460:CDS
TCAATGGCCCTGTTAGTAAC+AGG 0.414912 4_4:+31331523 Msa0677460:five_prime_UTR
ACATAAGTCCTTTAAGTTTG+AGG 0.415697 4_4:-31332930 None:intergenic
AGGGAAGAAAGCCTTTGTTT+TGG 0.416945 4_4:-31333390 None:intergenic
GTGTGTGTGATGTGTGTGTT+GGG 0.422728 4_4:-31332521 None:intergenic
GCTCCTATACCAACTATGAA+TGG 0.423440 4_4:+31330093 Msa0677460:five_prime_UTR
AAGAAAGAACTGAAGAGAAC+TGG 0.424963 4_4:+31338211 Msa0677460:CDS
ATTTGAGGTAAATCTAAAGT+TGG 0.426459 4_4:-31333052 None:intergenic
GATAACGAAAACCTGATAAC+AGG 0.426470 4_4:+31331290 Msa0677460:five_prime_UTR
GCCATAACGGTCTATAATAT+CGG 0.426995 4_4:-31337236 None:intergenic
TTAGCAGGGTTCAAATGAAA+AGG 0.429287 4_4:-31337481 None:intergenic
CATCTTCCATGAATTTAGAC+TGG 0.429361 4_4:-31338315 None:intergenic
GCACCCAAGTATTGTCCCTA+TGG 0.433679 4_4:-31332456 None:intergenic
AATATAAAATTAAAGAAATT+GGG 0.434737 4_4:+31338666 Msa0677460:three_prime_UTR
ATTTCACTAATAAAGTTAGC+AGG 0.435103 4_4:-31337496 None:intergenic
GTTATTGCTGGATACAAAGA+TGG 0.437111 4_4:+31337661 Msa0677460:CDS
ATGGAAGATGACGAGTTTGT+TGG 0.440293 4_4:+31338328 Msa0677460:three_prime_UTR
GTTTGAGGTTTGTAACAGAT+TGG 0.441744 4_4:-31332915 None:intergenic
GAGAATGTCTTTATAAATGA+TGG 0.442853 4_4:-31331410 None:intergenic
GGGCCATTGAATCTTTATAT+GGG 0.445494 4_4:-31331510 None:intergenic
TTTGCAAGTTGCAAATTCAA+TGG 0.445615 4_4:-31333342 None:intergenic
AGTCTTTGGTTGATGTTGGC+GGG 0.446010 4_4:+31337698 Msa0677460:CDS
GCATTCCCAGTCTAAATTCA+TGG 0.449506 4_4:+31338309 Msa0677460:exon
ACTGCTTTCTTTAGGTGTCA+TGG 0.450664 4_4:+31337544 Msa0677460:CDS
TTAGCATAGTGCATAACTAT+AGG 0.451127 4_4:-31332613 None:intergenic
CTATAGGACGGGTGGCACTT+TGG 0.454407 4_4:-31332597 None:intergenic
AGAACTTGACTTATAGAGTC+TGG 0.458447 4_4:+31331247 Msa0677460:five_prime_UTR
TGTCCCATAGGGACAATACT+TGG 0.461673 4_4:+31332452 Msa0677460:five_prime_UTR
TCCCATAGAACTGGTTTATG+AGG 0.462196 4_4:+31331105 Msa0677460:five_prime_UTR
TGTGTGTGTGATGTGTGTGT+TGG 0.462299 4_4:-31332522 None:intergenic
AAGTCTTTGGTTGATGTTGG+CGG 0.462461 4_4:+31337697 Msa0677460:CDS
CATGAACAATTTGAAATGAC+GGG 0.462928 4_4:+31337568 Msa0677460:CDS
AGGATAGTGGTTTGCCATAA+CGG 0.463766 4_4:-31337249 None:intergenic
CTAACGTGTCAATATTTAAA+CGG 0.464160 4_4:+31332349 Msa0677460:five_prime_UTR
TTCAAATTATGATACACAAA+AGG 0.466985 4_4:-31338435 None:intergenic
GGAAAATATATTGATAACAT+AGG 0.468880 4_4:-31330520 None:intergenic
CTTACACAATCCCATAGAAC+TGG 0.471234 4_4:+31331096 Msa0677460:five_prime_UTR
GAACCAAATTGTAGTGGTAA+AGG 0.471280 4_4:+31333151 Msa0677460:five_prime_UTR
TCTATATCTACGCACCTTGA+AGG 0.472047 4_4:-31333491 None:intergenic
CTAAATTCAACAATAGCATA+TGG 0.474227 4_4:-31330325 None:intergenic
GAAAAGTGTTAGTTTGTCCA+TGG 0.474555 4_4:+31330547 Msa0677460:five_prime_UTR
TATCTTCTCCCATTCATAGT+TGG 0.475577 4_4:-31330102 None:intergenic
AAGGCAATACCAGAGAAAAC+AGG 0.476074 4_4:+31338081 Msa0677460:CDS
TGGTTTCAAGTGAGGGGTGA+GGG 0.478167 4_4:-31333409 None:intergenic
AATGGTTAATAAAGACGATA+AGG 0.478588 4_4:-31333324 None:intergenic
AATTAAAGAAATTGGGTCAT+GGG 0.478858 4_4:+31338673 Msa0677460:three_prime_UTR
CTCCTATACCAACTATGAAT+GGG 0.479603 4_4:+31330094 Msa0677460:five_prime_UTR
TTTCACTACAATATAGGGAT+TGG 0.479860 4_4:-31332289 None:intergenic
GAGTTAACAAAATAAAATGA+TGG 0.480467 4_4:-31329934 None:intergenic
TGGTTCCAATTCAGGTGTGT+TGG 0.483603 4_4:-31333370 None:intergenic
TTAGAACAAAAGAACTCAAA+GGG 0.483714 4_4:-31330942 None:intergenic
GCCGATATTATAGACCGTTA+TGG 0.483784 4_4:+31337235 Msa0677460:CDS
GGCAGTGGATTCTTCATGAC+TGG 0.484877 4_4:+31338019 Msa0677460:intron
TAACTTTGATTTGCCTCATG+TGG 0.490029 4_4:+31337777 Msa0677460:CDS
ATTAAGTCTTTGGTTGATGT+TGG 0.491660 4_4:+31337694 Msa0677460:CDS
ACATGTTATCATGTGAGTAA+AGG 0.493009 4_4:-31331848 None:intergenic
ATCAGTTTATAGATTGGATA+GGG 0.493253 4_4:-31331624 None:intergenic
AAACCCATATAAAGATTCAA+TGG 0.494885 4_4:+31331507 Msa0677460:five_prime_UTR
AATCAGTTTATAGATTGGAT+AGG 0.494901 4_4:-31331625 None:intergenic
CATCAATGGCCAGGATGTAA+TGG 0.498439 4_4:-31332495 None:intergenic
AAACATGTCTCCTCCAACAT+GGG 0.498630 4_4:-31337830 None:intergenic
GTCTTTGGTTGATGTTGGCG+GGG 0.504180 4_4:+31337699 Msa0677460:CDS
ACCTCATAAACCAGTTCTAT+GGG 0.504961 4_4:-31331106 None:intergenic
TTAAAAGTAGAGTGGAATCA+GGG 0.508759 4_4:-31337309 None:intergenic
TTTATGTGTTCACTTCAAAA+GGG 0.509138 4_4:-31330464 None:intergenic
GAAGAAGAAGAATCATTGCT+TGG 0.509681 4_4:+31337136 Msa0677460:CDS
TTTGATGGTATCACCCATGT+TGG 0.511129 4_4:+31337817 Msa0677460:CDS
TGTGTGTTGGGTGCCATCAA+TGG 0.513265 4_4:-31332509 None:intergenic
TAAGTCTTAGAAATCATGGT+TGG 0.514078 4_4:+31331071 Msa0677460:five_prime_UTR
GATATTGAAGAATTGTAGAA+AGG 0.519416 4_4:+31338062 Msa0677460:CDS
AATGAACCATTTACCGACAC+TGG 0.520366 4_4:+31338144 Msa0677460:CDS
TGACTTGTTCAACCAAGGTA+TGG 0.521535 4_4:+31337609 Msa0677460:CDS
GATGGTATCACCCATGTTGG+AGG 0.521547 4_4:+31337820 Msa0677460:CDS
AGCTAGCTATGATTCATGCA+TGG 0.523703 4_4:+31338481 Msa0677460:three_prime_UTR
AAAGTTTGAAGTGTTTGTGA+AGG 0.524315 4_4:+31331799 Msa0677460:five_prime_UTR
AAATTAAAGAAATTGGGTCA+TGG 0.525972 4_4:+31338672 Msa0677460:three_prime_UTR
AAGTCTTAGAAATCATGGTT+GGG 0.527220 4_4:+31331072 Msa0677460:five_prime_UTR
AAATATTAGTGACAGAAACT+AGG 0.527569 4_4:-31330801 None:intergenic
GATCATTGTGGATCATGTAT+TGG 0.533084 4_4:+31338110 Msa0677460:CDS
ACAATTTGAAATGACGGGGT+TGG 0.533144 4_4:+31337573 Msa0677460:CDS
TCTTCAATATCTTTATGCAA+TGG 0.534210 4_4:-31338050 None:intergenic
CAAACATGTCTCCTCCAACA+TGG 0.536952 4_4:-31337831 None:intergenic
AAATACTTATTCAACGAGAC+AGG 0.536963 4_4:+31338234 Msa0677460:CDS
ATGGTTTCAAGTGAGGGGTG+AGG 0.537632 4_4:-31333410 None:intergenic
TTTGCCTCATGTGGTTTCAA+CGG 0.539222 4_4:+31337786 Msa0677460:CDS
GTTGGGTGCCATCAATGGCC+AGG 0.539441 4_4:-31332504 None:intergenic
TTTCACTAATAAAGTTAGCA+GGG 0.540307 4_4:-31337495 None:intergenic
GCTAGCTATGATTCATGCAT+GGG 0.540353 4_4:+31338482 Msa0677460:three_prime_UTR
CAATATAGGGATTGGTATGT+CGG 0.540408 4_4:-31332281 None:intergenic
TGAATCAGAATTAGTATAGT+GGG 0.540954 4_4:-31329909 None:intergenic
TGATCTTGTTTATTTAGCAA+AGG 0.541047 4_4:+31332636 Msa0677460:five_prime_UTR
TATTGTAGTGAAATTATTGG+AGG 0.541537 4_4:+31332299 Msa0677460:five_prime_UTR
CAAGCCGTAGAGAATTTCCC+CGG 0.542265 4_4:-31337386 None:intergenic
TGCTGATGCTATTTACATGA+AGG 0.545789 4_4:+31337867 Msa0677460:CDS
TAGCAGGGTTCAAATGAAAA+GGG 0.549937 4_4:-31337480 None:intergenic
CATGAATCATAGCTAGCTCT+AGG 0.551516 4_4:-31338476 None:intergenic
GGCACCGTGCCATTACATCC+TGG 0.551691 4_4:+31332486 Msa0677460:five_prime_UTR
AAGGCTAACTTATGTCCCAT+AGG 0.551984 4_4:+31332440 Msa0677460:five_prime_UTR
AGGATAAGCTCTAACAATCT+CGG 0.552345 4_4:-31337740 None:intergenic
GAGTCTGGTTCAAGATATGT+TGG 0.553621 4_4:-31331317 None:intergenic
TCATGAACAATTTGAAATGA+CGG 0.554113 4_4:+31337567 Msa0677460:CDS
CACCCAAGTATTGTCCCTAT+GGG 0.555324 4_4:-31332455 None:intergenic
TTCGTATGTGTTGTGTTGTG+TGG 0.557358 4_4:+31338377 Msa0677460:three_prime_UTR
AGAATGTCTTTATAAATGAT+GGG 0.557360 4_4:-31331409 None:intergenic
TTATTGCTGGATACAAAGAT+GGG 0.557554 4_4:+31337662 Msa0677460:CDS
GAATGAGATGGTTTCAAGTG+AGG 0.558838 4_4:-31333417 None:intergenic
AAAATTTATACTCTTCCAGT+AGG 0.559078 4_4:+31332053 Msa0677460:five_prime_UTR
TTTAAGAGTAATGAGAGTCA+TGG 0.559249 4_4:+31337327 Msa0677460:CDS
TATTGACCAGGGTGTGAGCA+AGG 0.559868 4_4:+31337114 Msa0677460:intron
CTGCTATCTGATCTGCTGAT+GGG 0.562055 4_4:-31338519 None:intergenic
ATTAGAACAAAAGAACTCAA+AGG 0.566206 4_4:-31330943 None:intergenic
AGTCAAGTTCTGAGCGTAAG+TGG 0.568102 4_4:-31331235 None:intergenic
AGTTAACAAAATAAAATGAT+GGG 0.570566 4_4:-31329933 None:intergenic
ATCTTCCATGAATTTAGACT+GGG 0.572279 4_4:-31338314 None:intergenic
AAAAGTGTTAGTTTGTCCAT+GGG 0.572745 4_4:+31330548 Msa0677460:five_prime_UTR
GTCTCGTATCAGATACAAGA+TGG 0.575376 4_4:-31331163 None:intergenic
CACCGCTAGAATTGTGTCGA+GGG 0.576078 4_4:+31337636 Msa0677460:CDS
AATGAGATGGTTTCAAGTGA+GGG 0.579215 4_4:-31333416 None:intergenic
AATATATTGATAACATAGGA+TGG 0.581647 4_4:-31330516 None:intergenic
ATAACATAGGATGGTCTACA+AGG 0.585694 4_4:-31330507 None:intergenic
GGCACCATGCCATTAAATCA+GGG 0.586455 4_4:-31332564 None:intergenic
TAGCGGTGCAAACCATACCT+TGG 0.586631 4_4:-31337621 None:intergenic
CATTACTCTTAAAAGTAGAG+TGG 0.588009 4_4:-31337317 None:intergenic
TCTGCTATCTGATCTGCTGA+TGG 0.591530 4_4:-31338520 None:intergenic
GCACCGCTAGAATTGTGTCG+AGG 0.594031 4_4:+31337635 Msa0677460:CDS
CATAGTGCATAACTATAGGA+CGG 0.594649 4_4:-31332609 None:intergenic
ATGTAAATAGCATCAGCACT+AGG 0.596076 4_4:-31337862 None:intergenic
GGGAAGATGGACATGGACAA+TGG 0.597707 4_4:-31331892 None:intergenic
AGGCTAACTTATGTCCCATA+GGG 0.599762 4_4:+31332441 Msa0677460:five_prime_UTR
ATAGTGCATAACTATAGGAC+GGG 0.601013 4_4:-31332608 None:intergenic
TGTGATTGATGAGTGTGTGG+TGG 0.601715 4_4:-31333202 None:intergenic
CAAAATGATGATGTGGCAGA+AGG 0.602463 4_4:+31332831 Msa0677460:five_prime_UTR
GTCAAATGCTATCCCAGTGT+CGG 0.602762 4_4:-31338157 None:intergenic
TCTTTGGTTGATGTTGGCGG+GGG 0.603652 4_4:+31337700 Msa0677460:CDS
GTTCTCAGGGAAGATGGACA+TGG 0.604205 4_4:-31331899 None:intergenic
CTACGCACCTTGAAGGCAGA+AGG 0.604702 4_4:-31333484 None:intergenic
AAAAGGTTAAGTTACACCAT+GGG 0.606738 4_4:-31333005 None:intergenic
TGCTCTGCCATGCATCATTG+AGG 0.607068 4_4:+31338287 Msa0677460:CDS
ATGTTGCTTGCTCACAACGC+TGG 0.609694 4_4:+31338183 Msa0677460:CDS
ATGAACCATTTACCGACACT+GGG 0.609768 4_4:+31338145 Msa0677460:CDS
AAGTTAATAGCTTGAATGTG+AGG 0.610156 4_4:-31337760 None:intergenic
TCGTAAGTTATGAGCGTGAG+GGG 0.612046 4_4:-31331198 None:intergenic
AACAGGAAAGGTGATCATTG+TGG 0.615274 4_4:+31338098 Msa0677460:CDS
GTCCCATAGGGACAATACTT+GGG 0.615765 4_4:+31332453 Msa0677460:five_prime_UTR
TCTCGTAAGTTATGAGCGTG+AGG 0.617163 4_4:-31331200 None:intergenic
CACACACTTGGGGCAATGTG+TGG 0.618855 4_4:+31332541 Msa0677460:five_prime_UTR
CAAGCCCATTAAAACTAGCA+CGG 0.619820 4_4:-31331601 None:intergenic
GAAACCGGGGAAATTCTCTA+CGG 0.620852 4_4:+31337382 Msa0677460:CDS
CGCACCTTGAAGGCAGAAGG+TGG 0.621755 4_4:-31333481 None:intergenic
ATTAACGATCAAATATAGCA+TGG 0.624591 4_4:-31331025 None:intergenic
TACAATGACTTGTTCAACCA+AGG 0.624846 4_4:+31337604 Msa0677460:CDS
ACCACAAACTTAAAGACCCA+TGG 0.625835 4_4:+31332989 Msa0677460:five_prime_UTR
ATGAGATGGTTTCAAGTGAG+GGG 0.626615 4_4:-31333415 None:intergenic
AGCTATGATTCATGCATGGG+GGG 0.627479 4_4:+31338485 Msa0677460:three_prime_UTR
CTCGTAAGTTATGAGCGTGA+GGG 0.628147 4_4:-31331199 None:intergenic
ATATTAGACGATGAACTACA+AGG 0.630041 4_4:-31330587 None:intergenic
TTCTGCACTACAATGTAGTG+TGG 0.630656 4_4:-31333131 None:intergenic
GTGGCCCTGATTTAATGGCA+TGG 0.632644 4_4:+31332560 Msa0677460:five_prime_UTR
TATTACTTCAATAATGCACA+TGG 0.640664 4_4:+31333231 Msa0677460:five_prime_UTR
TGTTAACCAAAATGATGATG+TGG 0.642089 4_4:+31332824 Msa0677460:five_prime_UTR
GTAAGATTTATCATGCACAA+TGG 0.646286 4_4:-31332180 None:intergenic
CTAGCTATGATTCATGCATG+GGG 0.649012 4_4:+31338483 Msa0677460:three_prime_UTR
TGATTCTCTAGCAACAACAT+TGG 0.649459 4_4:-31337457 None:intergenic
CAAATAGATAATAAAGATAG+CGG 0.649558 4_4:-31330903 None:intergenic
CTGAATTGGAACCAAAACAA+AGG 0.651322 4_4:+31333379 Msa0677460:five_prime_UTR
GATCATGTATTGGACCCAGA+AGG 0.652817 4_4:+31338120 Msa0677460:CDS
AGTGCAGAACCAAATTGTAG+TGG 0.658078 4_4:+31333145 Msa0677460:five_prime_UTR
GTCTGGATATAAATGGTGAG+TGG 0.658149 4_4:+31331264 Msa0677460:five_prime_UTR
GGGAATGCCTCAATGATGCA+TGG 0.663145 4_4:-31338294 None:intergenic
ATAAGGTGTGATGAAATATG+TGG 0.663189 4_4:-31333307 None:intergenic
TAAAAGTAGAGTGGAATCAG+GGG 0.667415 4_4:-31337308 None:intergenic
ATGTTATCATGTGAGTAAAG+GGG 0.667964 4_4:-31331846 None:intergenic
ATAAGTTATGACAAACCTTG+TGG 0.668198 4_4:-31332393 None:intergenic
AAATTGAAGATGTGACCACA+AGG 0.668325 4_4:+31332378 Msa0677460:five_prime_UTR
CGTAAGTTATGAGCGTGAGG+GGG 0.668708 4_4:-31331197 None:intergenic
AGTAGAGTGGAATCAGGGGA+AGG 0.670234 4_4:-31337304 None:intergenic
AATACCAGAGAAAACAGGAA+AGG 0.671132 4_4:+31338086 Msa0677460:CDS
GTGCATAACTATAGGACGGG+TGG 0.671331 4_4:-31332605 None:intergenic
AATAAGGCCTGTTACTAACA+GGG 0.672200 4_4:-31331530 None:intergenic
ATGGCCAGGATGTAATGGCA+CGG 0.674657 4_4:-31332490 None:intergenic
ATGAACAATTTGAAATGACG+GGG 0.676832 4_4:+31337569 Msa0677460:CDS
TAATGTGATTGATGAGTGTG+TGG 0.677733 4_4:-31333205 None:intergenic
GGTGATACCATCAAAATTAG+GGG 0.681590 4_4:-31337809 None:intergenic
TTGCTTGCTCACAACGCTGG+TGG 0.684054 4_4:+31338186 Msa0677460:CDS
GAATCATAGCTAGCTCTAGG+TGG 0.688847 4_4:-31338473 None:intergenic
AGCCCTCGACACAATTCTAG+CGG 0.693934 4_4:-31337638 None:intergenic
AAAACGTGGCAGATGGAGTG+TGG 0.696847 4_4:-31333267 None:intergenic
TAGCTATGATTCATGCATGG+GGG 0.705108 4_4:+31338484 Msa0677460:three_prime_UTR
GGGGCCGTTGAAACCACATG+AGG 0.722984 4_4:-31337790 None:intergenic
AAAGAGTCAATAAATAAACG+TGG 0.744455 4_4:-31330621 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTTTGTGAAA+AGG + chr4_4:31331553-31331572 Msa0677460:five_prime_UTR 10.0%
!!! TTTTTTATTTTTTTTGAAAG+GGG + chr4_4:31331997-31332016 Msa0677460:five_prime_UTR 10.0%
!!! ATTAGTCTTTTAAATTATTT+TGG + chr4_4:31332753-31332772 Msa0677460:five_prime_UTR 10.0%
!! AAAAAAATTATAAATGTATC+TGG - chr4_4:31333709-31333728 None:intergenic 10.0%
!!! AATTTAGTTATTTTACTTAA+TGG + chr4_4:31334562-31334581 Msa0677460:intron 10.0%
!! TTTGAAAAAAAAAACTTAAT+AGG + chr4_4:31334830-31334849 Msa0677460:intron 10.0%
!!! TTATTGATCTTTTTTTTTTT+TGG - chr4_4:31335022-31335041 None:intergenic 10.0%
!!! ACATATATAATTTGATTTAA+TGG + chr4_4:31335048-31335067 Msa0677460:intron 10.0%
!! AAATTTGATAAAAAAATTAG+AGG - chr4_4:31335263-31335282 None:intergenic 10.0%
!! AATAAAATACATATGATAAA+AGG - chr4_4:31335860-31335879 None:intergenic 10.0%
!!! ATTTTAAAATTCATCAATTT+TGG - chr4_4:31336339-31336358 None:intergenic 10.0%
!! TATAAAACTTGATTAATAAT+AGG - chr4_4:31337096-31337115 None:intergenic 10.0%
!! CAATATAAAATTAAAGAAAT+TGG + chr4_4:31338665-31338684 Msa0677460:three_prime_UTR 10.0%
!! AGTTAACAAAATAAAATGAT+GGG - chr4_4:31329936-31329955 None:intergenic 15.0%
!!! GTAATATGATTTTTTTTTTC+TGG + chr4_4:31330875-31330894 Msa0677460:five_prime_UTR 15.0%
!!! AAGGAGAATTTATTTTAAAA+TGG + chr4_4:31331572-31331591 Msa0677460:five_prime_UTR 15.0%
!!! AGGAGAATTTATTTTAAAAT+GGG + chr4_4:31331573-31331592 Msa0677460:five_prime_UTR 15.0%
!!! TATAAATTTTTGGATTAATG+TGG - chr4_4:31332043-31332062 None:intergenic 15.0%
!! AATAATTTCACTACAATATA+GGG - chr4_4:31332297-31332316 None:intergenic 15.0%
!!! AACTTTATGATTTGTTAAAA+AGG - chr4_4:31333025-31333044 None:intergenic 15.0%
!! AAATTTAAATAAGACTAAGT+AGG - chr4_4:31333629-31333648 None:intergenic 15.0%
!! GCAAAATTGAATTATAAAAT+TGG + chr4_4:31334075-31334094 Msa0677460:intron 15.0%
!! AAAGAAAGAAGAAAAAAATA+GGG - chr4_4:31334687-31334706 None:intergenic 15.0%
!! AAAAGAAAGAAGAAAAAAAT+AGG - chr4_4:31334688-31334707 None:intergenic 15.0%
!! TATAAGTGATTATTTGAAAA+AGG + chr4_4:31334794-31334813 Msa0677460:intron 15.0%
!!! GATTTAATATTTTCCAAAAT+AGG + chr4_4:31335552-31335571 Msa0677460:intron 15.0%
!!! TATACTATGGTATAATTTTA+TGG + chr4_4:31335643-31335662 Msa0677460:intron 15.0%
!! AAGTATTATATACAATAATC+TGG - chr4_4:31335708-31335727 None:intergenic 15.0%
!!! CATATGATTTTTTTTTTTTG+AGG - chr4_4:31335886-31335905 None:intergenic 15.0%
!! AAAAAAAATCATATGTATCA+TGG + chr4_4:31335891-31335910 Msa0677460:intron 15.0%
!! TAATTTAGATAATGTCATAT+GGG - chr4_4:31335960-31335979 None:intergenic 15.0%
!! ATAATTTAGATAATGTCATA+TGG - chr4_4:31335961-31335980 None:intergenic 15.0%
!!! TCATATTCTTATTAGATTTT+AGG + chr4_4:31335980-31335999 Msa0677460:intron 15.0%
!!! TCTTTAGTTTATAAATAAGT+GGG - chr4_4:31336088-31336107 None:intergenic 15.0%
!!! TTCTTTAGTTTATAAATAAG+TGG - chr4_4:31336089-31336108 None:intergenic 15.0%
!!! CATTTTTGTAATTTATCAAT+TGG + chr4_4:31336227-31336246 Msa0677460:intron 15.0%
!! AAAAGAAACCTTATAAAAAA+TGG + chr4_4:31336463-31336482 Msa0677460:intron 15.0%
!!! ATATTTCACCATTTTTTATA+AGG - chr4_4:31336474-31336493 None:intergenic 15.0%
!!! TATTTTTATGTAATTGAGAT+AGG - chr4_4:31336807-31336826 None:intergenic 15.0%
!!! TAAACATTGATAATATCTTT+AGG + chr4_4:31336965-31336984 Msa0677460:intron 15.0%
!! ATTAGTGAAATTATAAAAGA+AGG + chr4_4:31337508-31337527 Msa0677460:CDS 15.0%
!! ACACATGAATTTAATTATAA+TGG + chr4_4:31337946-31337965 Msa0677460:intron 15.0%
!! GAGTTAACAAAATAAAATGA+TGG - chr4_4:31329937-31329956 None:intergenic 20.0%
!!! TTTCTAGGAATATTTGAATT+AGG - chr4_4:31329968-31329987 None:intergenic 20.0%
!!! AATATATTGATAACATAGGA+TGG - chr4_4:31330519-31330538 None:intergenic 20.0%
!!! GGAAAATATATTGATAACAT+AGG - chr4_4:31330523-31330542 None:intergenic 20.0%
!! CTATATTTAATTACAGATGA+TGG + chr4_4:31330750-31330769 Msa0677460:five_prime_UTR 20.0%
!! CAAATAGATAATAAAGATAG+CGG - chr4_4:31330906-31330925 None:intergenic 20.0%
!!! TGACAATTTGTTTATAAGTT+GGG - chr4_4:31331141-31331160 None:intergenic 20.0%
!! AGAATGTCTTTATAAATGAT+GGG - chr4_4:31331412-31331431 None:intergenic 20.0%
!!! AATTTATTTTAAAATGGGCT+GGG + chr4_4:31331578-31331597 Msa0677460:five_prime_UTR 20.0%
!!! TACTAGATGCTTTTTTTTTT+TGG - chr4_4:31331707-31331726 None:intergenic 20.0%
!! TATATAGTTAAAGTGTGTTT+GGG - chr4_4:31331977-31331996 None:intergenic 20.0%
!! ATATATAGTTAAAGTGTGTT+TGG - chr4_4:31331978-31331997 None:intergenic 20.0%
!! ATAATTATTTAATCACCTAC+TGG - chr4_4:31332071-31332090 None:intergenic 20.0%
!! ATAATTATTTAATCACCTAC+TGG - chr4_4:31332071-31332090 None:intergenic 20.0%
!! CAATAATTTCACTACAATAT+AGG - chr4_4:31332298-31332317 None:intergenic 20.0%
!! CTATATTGTAGTGAAATTAT+TGG + chr4_4:31332296-31332315 Msa0677460:five_prime_UTR 20.0%
!!! ATATAACTTCTTTAAGTTTG+AGG + chr4_4:31332720-31332739 Msa0677460:five_prime_UTR 20.0%
!!! GATTGGTTTTTAAGTTATTT+TGG - chr4_4:31332901-31332920 None:intergenic 20.0%
!!! ATTAGTCTTTTAAGTTATGT+TGG - chr4_4:31332960-31332979 None:intergenic 20.0%
!! CAAAAAATTGTTAAACATTG+TGG - chr4_4:31334498-31334517 None:intergenic 20.0%
!! ATCTTAATTAAAGATAGTGT+TGG - chr4_4:31334656-31334675 None:intergenic 20.0%
!!! AGACTTTTACTTTTCTAATT+TGG - chr4_4:31335441-31335460 None:intergenic 20.0%
!! GTCATCATTATTTAAAAATC+AGG - chr4_4:31335471-31335490 None:intergenic 20.0%
!!! ATAATTTTGTTTACCACAAT+GGG + chr4_4:31335608-31335627 Msa0677460:intron 20.0%
!! GTTTGATATTAGTTATACTA+TGG + chr4_4:31335630-31335649 Msa0677460:intron 20.0%
!! AAGAAAAAGAAGATTATAAC+CGG - chr4_4:31335754-31335773 None:intergenic 20.0%
!!! TTTTGTAATTTATCAATTGG+AGG + chr4_4:31336230-31336249 Msa0677460:intron 20.0%
!!! CAAATTTTTAGACTAAACAA+TGG - chr4_4:31336307-31336326 None:intergenic 20.0%
!! GGTCTATAATGATAAAATAT+AGG - chr4_4:31336416-31336435 None:intergenic 20.0%
!!! TTTTTTTTTTTAAGAGAGTG+TGG - chr4_4:31336519-31336538 None:intergenic 20.0%
!! TGAGCAATAATAACTATTAA+AGG - chr4_4:31336887-31336906 None:intergenic 20.0%
!! AAACTTGATTAATAATAGGA+TGG - chr4_4:31337092-31337111 None:intergenic 20.0%
!! TTTCAAATTTATTGTGCATT+TGG + chr4_4:31337918-31337937 Msa0677460:intron 20.0%
!!! TTTAAAATTGACCTTATCTT+TGG + chr4_4:31337990-31338009 Msa0677460:intron 20.0%
!! TTAAAATTGACCTTATCTTT+GGG + chr4_4:31337991-31338010 Msa0677460:intron 20.0%
!! TTCAAATTATGATACACAAA+AGG - chr4_4:31338438-31338457 None:intergenic 20.0%
!!! AGTTAAATGAATTTTAGAAG+AGG - chr4_4:31338633-31338652 None:intergenic 20.0%
! TGAATCAGAATTAGTATAGT+GGG - chr4_4:31329912-31329931 None:intergenic 25.0%
! TTGAATCAGAATTAGTATAG+TGG - chr4_4:31329913-31329932 None:intergenic 25.0%
! AATATTCCTAGAAACTTTAG+TGG + chr4_4:31329974-31329993 Msa0677460:five_prime_UTR 25.0%
! CTAAATTCAACAATAGCATA+TGG - chr4_4:31330328-31330347 None:intergenic 25.0%
! TAGCAAAATCATAAGTTTGT+TGG - chr4_4:31330428-31330447 None:intergenic 25.0%
! TTTATGTGTTCACTTCAAAA+GGG - chr4_4:31330467-31330486 None:intergenic 25.0%
! ATTTATGTGTTCACTTCAAA+AGG - chr4_4:31330468-31330487 None:intergenic 25.0%
! AAAGAGTCAATAAATAAACG+TGG - chr4_4:31330624-31330643 None:intergenic 25.0%
! AAATATTAGTGACAGAAACT+AGG - chr4_4:31330804-31330823 None:intergenic 25.0%
! TTAGAACAAAAGAACTCAAA+GGG - chr4_4:31330945-31330964 None:intergenic 25.0%
! ATTAGAACAAAAGAACTCAA+AGG - chr4_4:31330946-31330965 None:intergenic 25.0%
! ATTAACGATCAAATATAGCA+TGG - chr4_4:31331028-31331047 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+TGG - chr4_4:31331142-31331161 None:intergenic 25.0%
! TTATAGAGTCTGGATATAAA+TGG + chr4_4:31331257-31331276 Msa0677460:five_prime_UTR 25.0%
!! CTCAAACACAATTTCTAAAA+AGG - chr4_4:31331348-31331367 None:intergenic 25.0%
!! TCTCACAAACTAATTTTGTA+GGG - chr4_4:31331380-31331399 None:intergenic 25.0%
!! ATCTCACAAACTAATTTTGT+AGG - chr4_4:31331381-31331400 None:intergenic 25.0%
! GAGAATGTCTTTATAAATGA+TGG - chr4_4:31331413-31331432 None:intergenic 25.0%
!!! TTTTTACACCTATGCTTTTT+GGG - chr4_4:31331451-31331470 None:intergenic 25.0%
! ATTGAATCTTTATATGGGTT+TGG - chr4_4:31331508-31331527 None:intergenic 25.0%
! AAACCCATATAAAGATTCAA+TGG + chr4_4:31331507-31331526 Msa0677460:five_prime_UTR 25.0%
!!! GAATTTATTTTAAAATGGGC+TGG + chr4_4:31331577-31331596 Msa0677460:five_prime_UTR 25.0%
! ATCAGTTTATAGATTGGATA+GGG - chr4_4:31331627-31331646 None:intergenic 25.0%
! AATCAGTTTATAGATTGGAT+AGG - chr4_4:31331628-31331647 None:intergenic 25.0%
!!! ACTGGAAGAGTATAAATTTT+TGG - chr4_4:31332053-31332072 None:intergenic 25.0%
! AAAATTTATACTCTTCCAGT+AGG + chr4_4:31332053-31332072 Msa0677460:five_prime_UTR 25.0%
!! TAATTATTTTCAGTTCCAGT+AGG + chr4_4:31332084-31332103 Msa0677460:intron 25.0%
! TATTGTAGTGAAATTATTGG+AGG + chr4_4:31332299-31332318 Msa0677460:five_prime_UTR 25.0%
! CTAACGTGTCAATATTTAAA+CGG + chr4_4:31332349-31332368 Msa0677460:five_prime_UTR 25.0%
!! TGATCTTGTTTATTTAGCAA+AGG + chr4_4:31332636-31332655 Msa0677460:five_prime_UTR 25.0%
!! GAAAGCTTTTACAAACTTAA+AGG - chr4_4:31332791-31332810 None:intergenic 25.0%
!! ATTTGAGGTAAATCTAAAGT+TGG - chr4_4:31333055-31333074 None:intergenic 25.0%
! TATTACTTCAATAATGCACA+TGG + chr4_4:31333231-31333250 Msa0677460:five_prime_UTR 25.0%
! AATGGTTAATAAAGACGATA+AGG - chr4_4:31333327-31333346 None:intergenic 25.0%
! TTGTGTAAAAAAGAATGAGA+TGG - chr4_4:31333432-31333451 None:intergenic 25.0%
!!! CATTCTTTTTTACACAAACA+TGG + chr4_4:31333435-31333454 Msa0677460:exon 25.0%
! AACTGAACATTATACAAACT+GGG - chr4_4:31333797-31333816 None:intergenic 25.0%
! AGTTTGTATAATGTTCAGTT+CGG + chr4_4:31333797-31333816 Msa0677460:intron 25.0%
! ATGTAAACTACATATGTGTA+AGG + chr4_4:31334017-31334036 Msa0677460:intron 25.0%
! GAATTATAAAATTGGACAAC+AGG + chr4_4:31334083-31334102 Msa0677460:intron 25.0%
!!! GTTTTTTAGTTATAAGTCAG+CGG - chr4_4:31334344-31334363 None:intergenic 25.0%
! CTGACTTATAACTAAAAAAC+TGG + chr4_4:31334344-31334363 Msa0677460:intron 25.0%
! ACTTATAACTAAAAAACTGG+CGG + chr4_4:31334347-31334366 Msa0677460:intron 25.0%
!!! TTTTTACCCTTTTTTTACTG+AGG + chr4_4:31334875-31334894 Msa0677460:intron 25.0%
! CTTTAACCTCAGTAAAAAAA+GGG - chr4_4:31334884-31334903 None:intergenic 25.0%
! ACTTTAACCTCAGTAAAAAA+AGG - chr4_4:31334885-31334904 None:intergenic 25.0%
! AAAAAATTAGAGGATCTTGT+AGG - chr4_4:31335253-31335272 None:intergenic 25.0%
!! GTTTTGTCTCAAAAATTTGA+GGG - chr4_4:31335346-31335365 None:intergenic 25.0%
!!! CATAATTTTGTTTACCACAA+TGG + chr4_4:31335607-31335626 Msa0677460:intron 25.0%
!! CTTTTTCTTTTACAAAATCG+TGG + chr4_4:31335765-31335784 Msa0677460:intron 25.0%
! TAGTTTATAAATAAGTGGGA+GGG - chr4_4:31336084-31336103 None:intergenic 25.0%
! TTAGTTTATAAATAAGTGGG+AGG - chr4_4:31336085-31336104 None:intergenic 25.0%
! TATTGATCATTCCATTTCAT+CGG - chr4_4:31336150-31336169 None:intergenic 25.0%
! CATCAATAAAATAGTAAGTG+TGG - chr4_4:31336545-31336564 None:intergenic 25.0%
! TCTTTCTAACACATTATTGT+GGG - chr4_4:31336694-31336713 None:intergenic 25.0%
! ATCTTTCTAACACATTATTG+TGG - chr4_4:31336695-31336714 None:intergenic 25.0%
! TTATCGTTTACATTTCACTT+TGG + chr4_4:31336731-31336750 Msa0677460:intron 25.0%
!!! AATCAAGTTTTATATTGACC+AGG + chr4_4:31337102-31337121 Msa0677460:intron 25.0%
!!! ATCAAGTTTTATATTGACCA+GGG + chr4_4:31337103-31337122 Msa0677460:intron 25.0%
! TTTCACTAATAAAGTTAGCA+GGG - chr4_4:31337498-31337517 None:intergenic 25.0%
! ATTTCACTAATAAAGTTAGC+AGG - chr4_4:31337499-31337518 None:intergenic 25.0%
!! ATAAAAGAAGGCACAAAAAA+TGG + chr4_4:31337520-31337539 Msa0677460:CDS 25.0%
!! TCATGAACAATTTGAAATGA+CGG + chr4_4:31337567-31337586 Msa0677460:CDS 25.0%
! GTTTAACCAAATTAAGTCTT+TGG + chr4_4:31337684-31337703 Msa0677460:CDS 25.0%
! TCTTCAATATCTTTATGCAA+TGG - chr4_4:31338053-31338072 None:intergenic 25.0%
! GATATTGAAGAATTGTAGAA+AGG + chr4_4:31338062-31338081 Msa0677460:CDS 25.0%
!!! GAATTTTAGAAGAGGAAAAA+GGG - chr4_4:31338625-31338644 None:intergenic 25.0%
!!! TGAATTTTAGAAGAGGAAAA+AGG - chr4_4:31338626-31338645 None:intergenic 25.0%
! AAATTAAAGAAATTGGGTCA+TGG + chr4_4:31338672-31338691 Msa0677460:three_prime_UTR 25.0%
! AATTAAAGAAATTGGGTCAT+GGG + chr4_4:31338673-31338692 Msa0677460:three_prime_UTR 25.0%
!!! ACACACATTCTTTCTAGTTT+TGG - chr4_4:31330035-31330054 None:intergenic 30.0%
!! ATCATAAGTTTGTTGGATTC+TGG - chr4_4:31330421-31330440 None:intergenic 30.0%
! ACAAACTAACACTTTTCGAT+AGG - chr4_4:31330544-31330563 None:intergenic 30.0%
!! AAAAGTGTTAGTTTGTCCAT+GGG + chr4_4:31330548-31330567 Msa0677460:five_prime_UTR 30.0%
! ACAAATTAACACTTTTCCCA+TGG - chr4_4:31330567-31330586 None:intergenic 30.0%
ATATTAGACGATGAACTACA+AGG - chr4_4:31330590-31330609 None:intergenic 30.0%
!! CCATGATTTCTAAGACTTAT+TGG - chr4_4:31331070-31331089 None:intergenic 30.0%
CCAATAAGTCTTAGAAATCA+TGG + chr4_4:31331067-31331086 Msa0677460:five_prime_UTR 30.0%
TAAGTCTTAGAAATCATGGT+TGG + chr4_4:31331071-31331090 Msa0677460:five_prime_UTR 30.0%
AAGTCTTAGAAATCATGGTT+GGG + chr4_4:31331072-31331091 Msa0677460:five_prime_UTR 30.0%
! CTTTTTACACCTATGCTTTT+TGG - chr4_4:31331452-31331471 None:intergenic 30.0%
! GAACAAGAGTGTACAAATAT+AGG + chr4_4:31331480-31331499 Msa0677460:five_prime_UTR 30.0%
CCTGAAATCAGTTTATAGAT+TGG - chr4_4:31331633-31331652 None:intergenic 30.0%
! CCAATCTATAAACTGATTTC+AGG + chr4_4:31331630-31331649 Msa0677460:five_prime_UTR 30.0%
! CTTTTGTAACTATCGTTTAG+TGG - chr4_4:31331783-31331802 None:intergenic 30.0%
! AAAGTTTGAAGTGTTTGTGA+AGG + chr4_4:31331799-31331818 Msa0677460:five_prime_UTR 30.0%
ATGTTATCATGTGAGTAAAG+GGG - chr4_4:31331849-31331868 None:intergenic 30.0%
CATGTTATCATGTGAGTAAA+GGG - chr4_4:31331850-31331869 None:intergenic 30.0%
ACATGTTATCATGTGAGTAA+AGG - chr4_4:31331851-31331870 None:intergenic 30.0%
!!! TAGATTTGTTTTGGTTCTCA+GGG - chr4_4:31331915-31331934 None:intergenic 30.0%
!! GCAACTATGTAGATTTGTTT+TGG - chr4_4:31331924-31331943 None:intergenic 30.0%
! ACTTTACATGCATGAGTTTT+TGG + chr4_4:31331946-31331965 Msa0677460:five_prime_UTR 30.0%
!! TTATCATGCACAATGGATTA+AGG - chr4_4:31332176-31332195 None:intergenic 30.0%
GTAAGATTTATCATGCACAA+TGG - chr4_4:31332183-31332202 None:intergenic 30.0%
TTTCACTACAATATAGGGAT+TGG - chr4_4:31332292-31332311 None:intergenic 30.0%
ATAAGTTATGACAAACCTTG+TGG - chr4_4:31332396-31332415 None:intergenic 30.0%
TTAGCATAGTGCATAACTAT+AGG - chr4_4:31332616-31332635 None:intergenic 30.0%
!!! TCAGAGATCTTTTAAGTTTG+AGG + chr4_4:31332669-31332688 Msa0677460:five_prime_UTR 30.0%
! GTTTGAGGTTTGTAATAGAT+TGG + chr4_4:31332684-31332703 Msa0677460:five_prime_UTR 30.0%
! TGTTAACCAAAATGATGATG+TGG + chr4_4:31332824-31332843 Msa0677460:five_prime_UTR 30.0%
GTTACAAACCTCAAACTTAA+AGG + chr4_4:31332922-31332941 Msa0677460:five_prime_UTR 30.0%
! ACATAAGTCCTTTAAGTTTG+AGG - chr4_4:31332933-31332952 None:intergenic 30.0%
AAAAGGTTAAGTTACACCAT+GGG - chr4_4:31333008-31333027 None:intergenic 30.0%
AAAAAGGTTAAGTTACACCA+TGG - chr4_4:31333009-31333028 None:intergenic 30.0%
! GCAATTAGAGAGTTAATTTG+AGG - chr4_4:31333070-31333089 None:intergenic 30.0%
TTTCCTTTACCACTACAATT+TGG - chr4_4:31333157-31333176 None:intergenic 30.0%
ATTGCTAAAGTTCAAAAACG+TGG - chr4_4:31333284-31333303 None:intergenic 30.0%
ATAAGGTGTGATGAAATATG+TGG - chr4_4:31333310-31333329 None:intergenic 30.0%
TTTGCAAGTTGCAAATTCAA+TGG - chr4_4:31333345-31333364 None:intergenic 30.0%
AAAAACGTTGCATATTGTCA+TGG - chr4_4:31333659-31333678 None:intergenic 30.0%
TTATTTAAGTGATGTTCCAG+TGG + chr4_4:31333735-31333754 Msa0677460:intron 30.0%
GAACTGAACATTATACAAAC+TGG - chr4_4:31333798-31333817 None:intergenic 30.0%
TGCAAAATTTCTTTCATGCA+AGG + chr4_4:31333928-31333947 Msa0677460:intron 30.0%
GCAAAATTTCTTTCATGCAA+GGG + chr4_4:31333929-31333948 Msa0677460:intron 30.0%
! AATTAGTGTTGAGATTGAGA+AGG + chr4_4:31333958-31333977 Msa0677460:intron 30.0%
GGTCTACAATAAATCTTGAT+TGG + chr4_4:31334038-31334057 Msa0677460:intron 30.0%
TCAAAAATGTGAGACATGTT+TGG - chr4_4:31334180-31334199 None:intergenic 30.0%
! CGTTAAAAAGGCAATTTTCA+TGG - chr4_4:31334261-31334280 None:intergenic 30.0%
!!! GCAAGTTTTAGACGTTAAAA+AGG - chr4_4:31334273-31334292 None:intergenic 30.0%
AAGACTAAAAAATTCAGCGA+TGG - chr4_4:31334380-31334399 None:intergenic 30.0%
!! AGTCTTTTTCATGTGTTTCT+AGG + chr4_4:31334394-31334413 Msa0677460:intron 30.0%
! TTTTCATCAGTTAGACATAG+TGG - chr4_4:31334529-31334548 None:intergenic 30.0%
! CGTTTTGTCTCAAAAATTTG+AGG - chr4_4:31335347-31335366 None:intergenic 30.0%
AAATTGACACTAATTCTCTC+TGG + chr4_4:31335500-31335519 Msa0677460:intron 30.0%
! GAGAAAAAACGAACCTATTT+TGG - chr4_4:31335568-31335587 None:intergenic 30.0%
AACTAATATCAAACCCATTG+TGG - chr4_4:31335624-31335643 None:intergenic 30.0%
AGATAATGTCATATGGGTTT+GGG - chr4_4:31335954-31335973 None:intergenic 30.0%
TAGATAATGTCATATGGGTT+TGG - chr4_4:31335955-31335974 None:intergenic 30.0%
!!! ATCTTATTTTCAACCACTCA+TGG + chr4_4:31336021-31336040 Msa0677460:intron 30.0%
! AACGGGTGGATTTAAAAATA+GGG - chr4_4:31336056-31336075 None:intergenic 30.0%
! AAACGGGTGGATTTAAAAAT+AGG - chr4_4:31336057-31336076 None:intergenic 30.0%
! ATTTTTAAATCCACCCGTTT+TGG + chr4_4:31336057-31336076 Msa0677460:intron 30.0%
ATTGATCATTCCATTTCATC+GGG - chr4_4:31336149-31336168 None:intergenic 30.0%
! TTGCTCAATTTTGCAAACAA+AGG + chr4_4:31336900-31336919 Msa0677460:intron 30.0%
! TGCTCAATTTTGCAAACAAA+GGG + chr4_4:31336901-31336920 Msa0677460:intron 30.0%
ATAATAGGAATCTTTGACCT+AGG - chr4_4:31336997-31337016 None:intergenic 30.0%
GTCAAAGATTCCTATTATGT+TGG + chr4_4:31336999-31337018 Msa0677460:intron 30.0%
ATTTGCGAATCCAACATAAT+AGG - chr4_4:31337012-31337031 None:intergenic 30.0%
TGCTTGGACAAATTGAAATA+TGG + chr4_4:31337152-31337171 Msa0677460:CDS 30.0%
! ACAATTTGAGTTAAGGATAG+TGG - chr4_4:31337265-31337284 None:intergenic 30.0%
! ATTCTGCACAATTTGAGTTA+AGG - chr4_4:31337272-31337291 None:intergenic 30.0%
TTAAAAGTAGAGTGGAATCA+GGG - chr4_4:31337312-31337331 None:intergenic 30.0%
CATTACTCTTAAAAGTAGAG+TGG - chr4_4:31337320-31337339 None:intergenic 30.0%
TTTAAGAGTAATGAGAGTCA+TGG + chr4_4:31337327-31337346 Msa0677460:CDS 30.0%
!!! ATGTCATTTTTGTGTCTTGT+AGG - chr4_4:31337432-31337451 None:intergenic 30.0%
ACAAGACACAAAAATGACAT+TGG + chr4_4:31337432-31337451 Msa0677460:CDS 30.0%
! CATGAACAATTTGAAATGAC+GGG + chr4_4:31337568-31337587 Msa0677460:CDS 30.0%
! ATGAACAATTTGAAATGACG+GGG + chr4_4:31337569-31337588 Msa0677460:CDS 30.0%
TTATTGCTGGATACAAAGAT+GGG + chr4_4:31337662-31337681 Msa0677460:CDS 30.0%
CATCAACCAAAGACTTAATT+TGG - chr4_4:31337693-31337712 None:intergenic 30.0%
! ATTAAGTCTTTGGTTGATGT+TGG + chr4_4:31337694-31337713 Msa0677460:CDS 30.0%
AAGTTAATAGCTTGAATGTG+AGG - chr4_4:31337763-31337782 None:intergenic 30.0%
TAAATGGTTCATTTCCTTCT+GGG - chr4_4:31338137-31338156 None:intergenic 30.0%
AAATACTTATTCAACGAGAC+AGG + chr4_4:31338234-31338253 Msa0677460:CDS 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG - chr4_4:31338263-31338282 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG - chr4_4:31338264-31338283 None:intergenic 30.0%
ATCTTCCATGAATTTAGACT+GGG - chr4_4:31338317-31338336 None:intergenic 30.0%
!!! ACTTGGAGTTTTGTTATCTA+AGG + chr4_4:31338404-31338423 Msa0677460:three_prime_UTR 30.0%
GAAATGCCACTAAAGTTTCT+AGG - chr4_4:31329983-31330002 None:intergenic 35.0%
!!! CACATTCTTTCTAGTTTTGG+AGG - chr4_4:31330032-31330051 None:intergenic 35.0%
! TATAGGAGCAGAGAAAGTTT+TGG - chr4_4:31330082-31330101 None:intergenic 35.0%
CTCCTATACCAACTATGAAT+GGG + chr4_4:31330094-31330113 Msa0677460:five_prime_UTR 35.0%
TATCTTCTCCCATTCATAGT+TGG - chr4_4:31330105-31330124 None:intergenic 35.0%
!!! CGATGTGAAGCTTGTTTTAA+AGG + chr4_4:31330129-31330148 Msa0677460:five_prime_UTR 35.0%
ATAACATAGGATGGTCTACA+AGG - chr4_4:31330510-31330529 None:intergenic 35.0%
!! GAAAAGTGTTAGTTTGTCCA+TGG + chr4_4:31330547-31330566 Msa0677460:five_prime_UTR 35.0%
ACCTCATAAACCAGTTCTAT+GGG - chr4_4:31331109-31331128 None:intergenic 35.0%
AGAACTTGACTTATAGAGTC+TGG + chr4_4:31331247-31331266 Msa0677460:five_prime_UTR 35.0%
GATAACGAAAACCTGATAAC+AGG + chr4_4:31331290-31331309 Msa0677460:five_prime_UTR 35.0%
!! TCTAAAAAGGTATCAGAGTC+TGG - chr4_4:31331335-31331354 None:intergenic 35.0%
GGGCCATTGAATCTTTATAT+GGG - chr4_4:31331513-31331532 None:intergenic 35.0%
AGGGCCATTGAATCTTTATA+TGG - chr4_4:31331514-31331533 None:intergenic 35.0%
AATAAGGCCTGTTACTAACA+GGG - chr4_4:31331533-31331552 None:intergenic 35.0%
AAATAAGGCCTGTTACTAAC+AGG - chr4_4:31331534-31331553 None:intergenic 35.0%
!!! AGCGTTCGAGTATTTTTTTG+AGG - chr4_4:31331744-31331763 None:intergenic 35.0%
!!! GTAGATTTGTTTTGGTTCTC+AGG - chr4_4:31331916-31331935 None:intergenic 35.0%
!! TTACATGCATGAGTTTTTGG+TGG + chr4_4:31331949-31331968 Msa0677460:five_prime_UTR 35.0%
! CAATATAGGGATTGGTATGT+CGG - chr4_4:31332284-31332303 None:intergenic 35.0%
AAATTGAAGATGTGACCACA+AGG + chr4_4:31332378-31332397 Msa0677460:five_prime_UTR 35.0%
ATAGTGCATAACTATAGGAC+GGG - chr4_4:31332611-31332630 None:intergenic 35.0%
CATAGTGCATAACTATAGGA+CGG - chr4_4:31332612-31332631 None:intergenic 35.0%
! GTTTGAGGTTTGTAACAGAT+TGG - chr4_4:31332735-31332754 None:intergenic 35.0%
GAACCAAATTGTAGTGGTAA+AGG + chr4_4:31333151-31333170 Msa0677460:five_prime_UTR 35.0%
TAATGTGATTGATGAGTGTG+TGG - chr4_4:31333208-31333227 None:intergenic 35.0%
!!! CTTTGTTTTGGTTCCAATTC+AGG - chr4_4:31333381-31333400 None:intergenic 35.0%
CTGAATTGGAACCAAAACAA+AGG + chr4_4:31333379-31333398 Msa0677460:five_prime_UTR 35.0%
! AATGAGATGGTTTCAAGTGA+GGG - chr4_4:31333419-31333438 None:intergenic 35.0%
GAACATTATACAAACTGGGA+AGG - chr4_4:31333793-31333812 None:intergenic 35.0%
GTATAATGTTCAGTTCGGAT+TGG + chr4_4:31333802-31333821 Msa0677460:intron 35.0%
!!! GGAATCTTTTTTTCCAACTG+TGG + chr4_4:31333856-31333875 Msa0677460:intron 35.0%
GAATTAATTACAGCCACAGT+TGG - chr4_4:31333872-31333891 None:intergenic 35.0%
GGTACACTACTCATCATAAA+TGG + chr4_4:31334104-31334123 Msa0677460:intron 35.0%
CGGTATTTAACTACAGTTGA+GGG - chr4_4:31334324-31334343 None:intergenic 35.0%
! TTTTTCATATCACGTGTGGA+TGG - chr4_4:31334454-31334473 None:intergenic 35.0%
TCCACACGTGATATGAAAAA+TGG + chr4_4:31334454-31334473 Msa0677460:intron 35.0%
!! TCCATTTTTCATATCACGTG+TGG - chr4_4:31334458-31334477 None:intergenic 35.0%
TTGTGCACATTAGACAATTG+TGG - chr4_4:31334933-31334952 None:intergenic 35.0%
CATTAGCATGTTTGATTAGC+CGG + chr4_4:31335732-31335751 Msa0677460:intron 35.0%
TTCCACGAAGAGGTAAAAAT+AGG + chr4_4:31336370-31336389 Msa0677460:intron 35.0%
TCCACGAAGAGGTAAAAATA+GGG + chr4_4:31336371-31336390 Msa0677460:intron 35.0%
CACATTATTGTGGGTCATTT+CGG - chr4_4:31336685-31336704 None:intergenic 35.0%
! ACTTTGGAGACATCAAGAAA+AGG + chr4_4:31336747-31336766 Msa0677460:intron 35.0%
! GCTCAATTTTGCAAACAAAG+GGG + chr4_4:31336902-31336921 Msa0677460:intron 35.0%
ATATCTTTAGGTGTTTGCCT+AGG + chr4_4:31336977-31336996 Msa0677460:intron 35.0%
GAAGAAGAAGAATCATTGCT+TGG + chr4_4:31337136-31337155 Msa0677460:CDS 35.0%
GCCATAACGGTCTATAATAT+CGG - chr4_4:31337239-31337258 None:intergenic 35.0%
TAAAAGTAGAGTGGAATCAG+GGG - chr4_4:31337311-31337330 None:intergenic 35.0%
CTTAAAAGTAGAGTGGAATC+AGG - chr4_4:31337313-31337332 None:intergenic 35.0%
AGTGCAGAAAAATCAGAAAC+CGG + chr4_4:31337367-31337386 Msa0677460:CDS 35.0%
TGATTCTCTAGCAACAACAT+TGG - chr4_4:31337460-31337479 None:intergenic 35.0%
TAGCAGGGTTCAAATGAAAA+GGG - chr4_4:31337483-31337502 None:intergenic 35.0%
TTAGCAGGGTTCAAATGAAA+AGG - chr4_4:31337484-31337503 None:intergenic 35.0%
AAAATGGCACTGCTTTCTTT+AGG + chr4_4:31337536-31337555 Msa0677460:CDS 35.0%
!! TACAATGACTTGTTCAACCA+AGG + chr4_4:31337604-31337623 Msa0677460:CDS 35.0%
GTTATTGCTGGATACAAAGA+TGG + chr4_4:31337661-31337680 Msa0677460:CDS 35.0%
! AGGATAAGCTCTAACAATCT+CGG - chr4_4:31337743-31337762 None:intergenic 35.0%
!! TAACTTTGATTTGCCTCATG+TGG + chr4_4:31337777-31337796 Msa0677460:CDS 35.0%
GGTGATACCATCAAAATTAG+GGG - chr4_4:31337812-31337831 None:intergenic 35.0%
GGGTGATACCATCAAAATTA+GGG - chr4_4:31337813-31337832 None:intergenic 35.0%
TGGGTGATACCATCAAAATT+AGG - chr4_4:31337814-31337833 None:intergenic 35.0%
ATGTAAATAGCATCAGCACT+AGG - chr4_4:31337865-31337884 None:intergenic 35.0%
! TGCTGATGCTATTTACATGA+AGG + chr4_4:31337867-31337886 Msa0677460:CDS 35.0%
AATACCAGAGAAAACAGGAA+AGG + chr4_4:31338086-31338105 Msa0677460:CDS 35.0%
GATCATTGTGGATCATGTAT+TGG + chr4_4:31338110-31338129 Msa0677460:CDS 35.0%
GTAAATGGTTCATTTCCTTC+TGG - chr4_4:31338138-31338157 None:intergenic 35.0%
AAGAAAGAACTGAAGAGAAC+TGG + chr4_4:31338211-31338230 Msa0677460:CDS 35.0%
CATCTTCCATGAATTTAGAC+TGG - chr4_4:31338318-31338337 None:intergenic 35.0%
AGGAAAAAGGGAAGAAAATG+TGG - chr4_4:31338613-31338632 None:intergenic 35.0%
GCTCCTATACCAACTATGAA+TGG + chr4_4:31330093-31330112 Msa0677460:five_prime_UTR 40.0%
! CTCCCATTCATAGTTGGTAT+AGG - chr4_4:31330099-31330118 None:intergenic 40.0%
CTTACACAATCCCATAGAAC+TGG + chr4_4:31331096-31331115 Msa0677460:five_prime_UTR 40.0%
! TCCCATAGAACTGGTTTATG+AGG + chr4_4:31331105-31331124 Msa0677460:five_prime_UTR 40.0%
CACCTCATAAACCAGTTCTA+TGG - chr4_4:31331110-31331129 None:intergenic 40.0%
GTCTCGTATCAGATACAAGA+TGG - chr4_4:31331166-31331185 None:intergenic 40.0%
GTCTGGATATAAATGGTGAG+TGG + chr4_4:31331264-31331283 Msa0677460:five_prime_UTR 40.0%
ATGTTGGACAACCTGTTATC+AGG - chr4_4:31331304-31331323 None:intergenic 40.0%
! GAGTCTGGTTCAAGATATGT+TGG - chr4_4:31331320-31331339 None:intergenic 40.0%
! CTCTTAAGCCCAAAAAGCAT+AGG + chr4_4:31331440-31331459 Msa0677460:five_prime_UTR 40.0%
CAAGCCCATTAAAACTAGCA+CGG - chr4_4:31331604-31331623 None:intergenic 40.0%
AGTAAAGGGGATTGCTCTTT+AGG - chr4_4:31331836-31331855 None:intergenic 40.0%
TGGAGGTCTATGTCCATATA+TGG + chr4_4:31332316-31332335 Msa0677460:five_prime_UTR 40.0%
TAGCACATGTGTGCCATATA+TGG - chr4_4:31332332-31332351 None:intergenic 40.0%
AAGGCTAACTTATGTCCCAT+AGG + chr4_4:31332440-31332459 Msa0677460:five_prime_UTR 40.0%
AGGCTAACTTATGTCCCATA+GGG + chr4_4:31332441-31332460 Msa0677460:five_prime_UTR 40.0%
!! CAATACTTGGGTGCCATTAA+TGG + chr4_4:31332465-31332484 Msa0677460:five_prime_UTR 40.0%
AATGTGTGGCCCTGATTTAA+TGG + chr4_4:31332555-31332574 Msa0677460:five_prime_UTR 40.0%
!! TAATGGCATGGTGCCATTAA+TGG + chr4_4:31332572-31332591 Msa0677460:five_prime_UTR 40.0%
! CTTCTGCCACATCATCATTT+TGG - chr4_4:31332833-31332852 None:intergenic 40.0%
! CAAAATGATGATGTGGCAGA+AGG + chr4_4:31332831-31332850 Msa0677460:five_prime_UTR 40.0%
ACCACAAACTTAAAGACCCA+TGG + chr4_4:31332989-31333008 Msa0677460:five_prime_UTR 40.0%
! ACCATGGGTCTTTAAGTTTG+TGG - chr4_4:31332993-31333012 None:intergenic 40.0%
TTCTGCACTACAATGTAGTG+TGG - chr4_4:31333134-31333153 None:intergenic 40.0%
AGTGCAGAACCAAATTGTAG+TGG + chr4_4:31333145-31333164 Msa0677460:five_prime_UTR 40.0%
AAGTTCAAAAACGTGGCAGA+TGG - chr4_4:31333277-31333296 None:intergenic 40.0%
!! AGGGAAGAAAGCCTTTGTTT+TGG - chr4_4:31333393-31333412 None:intergenic 40.0%
! ATGAGATGGTTTCAAGTGAG+GGG - chr4_4:31333418-31333437 None:intergenic 40.0%
! GAATGAGATGGTTTCAAGTG+AGG - chr4_4:31333420-31333439 None:intergenic 40.0%
TCTATATCTACGCACCTTGA+AGG - chr4_4:31333494-31333513 None:intergenic 40.0%
! TGATGTTCCAGTGGCTTTTA+TGG + chr4_4:31333744-31333763 Msa0677460:intron 40.0%
TTATACAAACTGGGAAGGCA+GGG - chr4_4:31333788-31333807 None:intergenic 40.0%
ATTATACAAACTGGGAAGGC+AGG - chr4_4:31333789-31333808 None:intergenic 40.0%
TTGGGAAACTCATCAGGAAA+TGG + chr4_4:31333835-31333854 Msa0677460:intron 40.0%
CATAAATGGCTCCACTTATG+TGG + chr4_4:31334118-31334137 Msa0677460:intron 40.0%
! AGACACACTAACGGATCATA+TGG + chr4_4:31334146-31334165 Msa0677460:intron 40.0%
GCGGTATTTAACTACAGTTG+AGG - chr4_4:31334325-31334344 None:intergenic 40.0%
! CAATTGTGGTGCTAACTCAA+TGG - chr4_4:31334919-31334938 None:intergenic 40.0%
AGGGAGATAAAATCCATGAG+TGG - chr4_4:31336037-31336056 None:intergenic 40.0%
TGACATACAACCCGATGAAA+TGG + chr4_4:31336136-31336155 Msa0677460:intron 40.0%
GAAAGATCAATTCCACGAAG+AGG + chr4_4:31336360-31336379 Msa0677460:intron 40.0%
CCACGAAGAGGTAAAAATAG+GGG + chr4_4:31336372-31336391 Msa0677460:intron 40.0%
CACGAAGAGGTAAAAATAGG+GGG + chr4_4:31336373-31336392 Msa0677460:intron 40.0%
TATGAGTCCACCACTATATG+TGG + chr4_4:31336644-31336663 Msa0677460:intron 40.0%
ATGAGTCCACCACTATATGT+GGG + chr4_4:31336645-31336664 Msa0677460:intron 40.0%
ACTATGAGTCCCACATATAG+TGG - chr4_4:31336657-31336676 None:intergenic 40.0%
AAAGGGGAATAAACAGTGTC+TGG + chr4_4:31336918-31336937 Msa0677460:intron 40.0%
!!! TTTTGCTCTAAAAGCTGTCG+TGG + chr4_4:31337201-31337220 Msa0677460:CDS 40.0%
GCCGATATTATAGACCGTTA+TGG + chr4_4:31337235-31337254 Msa0677460:CDS 40.0%
! AGGATAGTGGTTTGCCATAA+CGG - chr4_4:31337252-31337271 None:intergenic 40.0%
GTGCAGAAAAATCAGAAACC+GGG + chr4_4:31337368-31337387 Msa0677460:CDS 40.0%
TGCAGAAAAATCAGAAACCG+GGG + chr4_4:31337369-31337388 Msa0677460:CDS 40.0%
ACTGCTTTCTTTAGGTGTCA+TGG + chr4_4:31337544-31337563 Msa0677460:CDS 40.0%
! ACAATTTGAAATGACGGGGT+TGG + chr4_4:31337573-31337592 Msa0677460:CDS 40.0%
!! TGACTTGTTCAACCAAGGTA+TGG + chr4_4:31337609-31337628 Msa0677460:CDS 40.0%
! AAGTCTTTGGTTGATGTTGG+CGG + chr4_4:31337697-31337716 Msa0677460:CDS 40.0%
TTTGCCTCATGTGGTTTCAA+CGG + chr4_4:31337786-31337805 Msa0677460:CDS 40.0%
! TTTGATGGTATCACCCATGT+TGG + chr4_4:31337817-31337836 Msa0677460:CDS 40.0%
AAACATGTCTCCTCCAACAT+GGG - chr4_4:31337833-31337852 None:intergenic 40.0%
TGACCTTATCTTTGGGTGAA+TGG + chr4_4:31337998-31338017 Msa0677460:intron 40.0%
AAGGCAATACCAGAGAAAAC+AGG + chr4_4:31338081-31338100 Msa0677460:CDS 40.0%
! ATCACCTTTCCTGTTTTCTC+TGG - chr4_4:31338093-31338112 None:intergenic 40.0%
AACAGGAAAGGTGATCATTG+TGG + chr4_4:31338098-31338117 Msa0677460:CDS 40.0%
AATGAACCATTTACCGACAC+TGG + chr4_4:31338144-31338163 Msa0677460:CDS 40.0%
ATGAACCATTTACCGACACT+GGG + chr4_4:31338145-31338164 Msa0677460:CDS 40.0%
GCATTCCCAGTCTAAATTCA+TGG + chr4_4:31338309-31338328 Msa0677460:exon 40.0%
ATGGAAGATGACGAGTTTGT+TGG + chr4_4:31338328-31338347 Msa0677460:three_prime_UTR 40.0%
TTCGTATGTGTTGTGTTGTG+TGG + chr4_4:31338377-31338396 Msa0677460:three_prime_UTR 40.0%
! TTGTGTTGTGTGGCTTTACT+TGG + chr4_4:31338387-31338406 Msa0677460:three_prime_UTR 40.0%
! CATGAATCATAGCTAGCTCT+AGG - chr4_4:31338479-31338498 None:intergenic 40.0%
AGCTAGCTATGATTCATGCA+TGG + chr4_4:31338481-31338500 Msa0677460:three_prime_UTR 40.0%
GCTAGCTATGATTCATGCAT+GGG + chr4_4:31338482-31338501 Msa0677460:three_prime_UTR 40.0%
CTAGCTATGATTCATGCATG+GGG + chr4_4:31338483-31338502 Msa0677460:three_prime_UTR 40.0%
TAGCTATGATTCATGCATGG+GGG + chr4_4:31338484-31338503 Msa0677460:three_prime_UTR 40.0%
!!! GAGCAGAGAAAGTTTTGGAG+TGG - chr4_4:31330077-31330096 None:intergenic 45.0%
TCGTAAGTTATGAGCGTGAG+GGG - chr4_4:31331201-31331220 None:intergenic 45.0%
CTCGTAAGTTATGAGCGTGA+GGG - chr4_4:31331202-31331221 None:intergenic 45.0%
TCTCGTAAGTTATGAGCGTG+AGG - chr4_4:31331203-31331222 None:intergenic 45.0%
!! AGTCAAGTTCTGAGCGTAAG+TGG - chr4_4:31331238-31331257 None:intergenic 45.0%
TCAATGGCCCTGTTAGTAAC+AGG + chr4_4:31331523-31331542 Msa0677460:five_prime_UTR 45.0%
!!! TGGGCCGTGCTAGTTTTAAT+GGG + chr4_4:31331597-31331616 Msa0677460:five_prime_UTR 45.0%
!!! GTTTTGGTTCTCAGGGAAGA+TGG - chr4_4:31331908-31331927 None:intergenic 45.0%
TGTCCCATAGGGACAATACT+TGG + chr4_4:31332452-31332471 Msa0677460:five_prime_UTR 45.0%
GTCCCATAGGGACAATACTT+GGG + chr4_4:31332453-31332472 Msa0677460:five_prime_UTR 45.0%
! CACCCAAGTATTGTCCCTAT+GGG - chr4_4:31332458-31332477 None:intergenic 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - chr4_4:31332481-31332500 None:intergenic 45.0%
CATCAATGGCCAGGATGTAA+TGG - chr4_4:31332498-31332517 None:intergenic 45.0%
CATTACATCCTGGCCATTGA+TGG + chr4_4:31332496-31332515 Msa0677460:five_prime_UTR 45.0%
GTGTGTGTGATGTGTGTGTT+GGG - chr4_4:31332524-31332543 None:intergenic 45.0%
TGTGTGTGTGATGTGTGTGT+TGG - chr4_4:31332525-31332544 None:intergenic 45.0%
ACACATCACACACACACACT+TGG + chr4_4:31332529-31332548 Msa0677460:five_prime_UTR 45.0%
CACATCACACACACACACTT+GGG + chr4_4:31332530-31332549 Msa0677460:five_prime_UTR 45.0%
ACATCACACACACACACTTG+GGG + chr4_4:31332531-31332550 Msa0677460:five_prime_UTR 45.0%
GGCACCATGCCATTAAATCA+GGG - chr4_4:31332567-31332586 None:intergenic 45.0%
TGGCACCATGCCATTAAATC+AGG - chr4_4:31332568-31332587 None:intergenic 45.0%
!! TGGCACTTTGGTGCCATTAA+TGG - chr4_4:31332588-31332607 None:intergenic 45.0%
TGTGATTGATGAGTGTGTGG+TGG - chr4_4:31333205-31333224 None:intergenic 45.0%
CCAATTCAGGTGTGTTGGAT+TGG - chr4_4:31333368-31333387 None:intergenic 45.0%
CCAATCCAACACACCTGAAT+TGG + chr4_4:31333365-31333384 Msa0677460:five_prime_UTR 45.0%
TGGTTCCAATTCAGGTGTGT+TGG - chr4_4:31333373-31333392 None:intergenic 45.0%
! GTTCAGTTCGGATTGGACTA+TGG + chr4_4:31333809-31333828 Msa0677460:intron 45.0%
! TCGGATTGGACTATGGAGTT+TGG + chr4_4:31333816-31333835 Msa0677460:intron 45.0%
! CGGATTGGACTATGGAGTTT+GGG + chr4_4:31333817-31333836 Msa0677460:intron 45.0%
TGGAGTTTGGGAAACTCATC+AGG + chr4_4:31333829-31333848 Msa0677460:intron 45.0%
ATGGCTCCACTTATGTGGTT+TGG + chr4_4:31334123-31334142 Msa0677460:intron 45.0%
GTGTCTCCAAACCACATAAG+TGG - chr4_4:31334132-31334151 None:intergenic 45.0%
! GTGGTTTGGAGACACACTAA+CGG + chr4_4:31334137-31334156 Msa0677460:intron 45.0%
TTACTAATGTTGTGCGTCGC+AGG + chr4_4:31335915-31335934 Msa0677460:intron 45.0%
ATAAGTGGGAGGGACCAAAA+CGG - chr4_4:31336074-31336093 None:intergenic 45.0%
!!! CCCCTATTTTTACCTCTTCG+TGG - chr4_4:31336375-31336394 None:intergenic 45.0%
ATGAGTCCCACATATAGTGG+TGG - chr4_4:31336654-31336673 None:intergenic 45.0%
GAAACCGGGGAAATTCTCTA+CGG + chr4_4:31337382-31337401 Msa0677460:CDS 45.0%
GCTTGACACGTGCATCAAAA+TGG + chr4_4:31337404-31337423 Msa0677460:CDS 45.0%
! AGTCTTTGGTTGATGTTGGC+GGG + chr4_4:31337698-31337717 Msa0677460:CDS 45.0%
! TCAACGGCCCCTAATTTTGA+TGG + chr4_4:31337802-31337821 Msa0677460:CDS 45.0%
CAAACATGTCTCCTCCAACA+TGG - chr4_4:31337834-31337853 None:intergenic 45.0%
CTGCCATTCACCCAAAGATA+AGG - chr4_4:31338004-31338023 None:intergenic 45.0%
TATCTTTGGGTGAATGGCAG+TGG + chr4_4:31338004-31338023 Msa0677460:intron 45.0%
GATCATGTATTGGACCCAGA+AGG + chr4_4:31338120-31338139 Msa0677460:CDS 45.0%
GTCAAATGCTATCCCAGTGT+CGG - chr4_4:31338160-31338179 None:intergenic 45.0%
!! GAATCATAGCTAGCTCTAGG+TGG - chr4_4:31338476-31338495 None:intergenic 45.0%
AGCTATGATTCATGCATGGG+GGG + chr4_4:31338485-31338504 Msa0677460:three_prime_UTR 45.0%
CTGCTATCTGATCTGCTGAT+GGG - chr4_4:31338522-31338541 None:intergenic 45.0%
TCTGCTATCTGATCTGCTGA+TGG - chr4_4:31338523-31338542 None:intergenic 45.0%
!! ACAAAAAAAAATAAAAAATA+AGG - chr4_4:31331549-31331568 None:intergenic 5.0%
!!! TATTTTTTATTTTTTTTGAA+AGG + chr4_4:31331995-31332014 Msa0677460:five_prime_UTR 5.0%
!!! ATTTTTTATTTTTTTTGAAA+GGG + chr4_4:31331996-31332015 Msa0677460:five_prime_UTR 5.0%
!! TTCAAAAAAAAAAAAAAAAT+AGG - chr4_4:31332421-31332440 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTTTTGAA+AGG + chr4_4:31332421-31332440 Msa0677460:five_prime_UTR 5.0%
!! ATTAATTTATGATAAAAAAA+AGG - chr4_4:31336437-31336456 None:intergenic 5.0%
!!! AATATAAGTAAATTTTAATA+TGG + chr4_4:31337049-31337068 Msa0677460:intron 5.0%
!! AATATAAAATTAAAGAAATT+GGG + chr4_4:31338666-31338685 Msa0677460:three_prime_UTR 5.0%
CGTAAGTTATGAGCGTGAGG+GGG - chr4_4:31331200-31331219 None:intergenic 50.0%
!!! CTGGGCCGTGCTAGTTTTAA+TGG + chr4_4:31331596-31331615 Msa0677460:five_prime_UTR 50.0%
GGGAAGATGGACATGGACAA+TGG - chr4_4:31331895-31331914 None:intergenic 50.0%
GTTCTCAGGGAAGATGGACA+TGG - chr4_4:31331902-31331921 None:intergenic 50.0%
! GCACCCAAGTATTGTCCCTA+TGG - chr4_4:31332459-31332478 None:intergenic 50.0%
ATGGCCAGGATGTAATGGCA+CGG - chr4_4:31332493-31332512 None:intergenic 50.0%
! TGTGTGTTGGGTGCCATCAA+TGG - chr4_4:31332512-31332531 None:intergenic 50.0%
GTGGCCCTGATTTAATGGCA+TGG + chr4_4:31332560-31332579 Msa0677460:five_prime_UTR 50.0%
GTGCATAACTATAGGACGGG+TGG - chr4_4:31332608-31332627 None:intergenic 50.0%
AAAACGTGGCAGATGGAGTG+TGG - chr4_4:31333270-31333289 None:intergenic 50.0%
! TGGTTTCAAGTGAGGGGTGA+GGG - chr4_4:31333412-31333431 None:intergenic 50.0%
! ATGGTTTCAAGTGAGGGGTG+AGG - chr4_4:31333413-31333432 None:intergenic 50.0%
!! CAGGGTTAGTATTGGTCCAG+TGG - chr4_4:31333770-31333789 None:intergenic 50.0%
! TGGGAAGGCAGGGTTAGTAT+TGG - chr4_4:31333778-31333797 None:intergenic 50.0%
TAAGTGGGAGGGACCAAAAC+GGG - chr4_4:31336073-31336092 None:intergenic 50.0%
TATTGACCAGGGTGTGAGCA+AGG + chr4_4:31337114-31337133 Msa0677460:intron 50.0%
AGTAGAGTGGAATCAGGGGA+AGG - chr4_4:31337307-31337326 None:intergenic 50.0%
CAAGCCGTAGAGAATTTCCC+CGG - chr4_4:31337389-31337408 None:intergenic 50.0%
TAGCGGTGCAAACCATACCT+TGG - chr4_4:31337624-31337643 None:intergenic 50.0%
CACCGCTAGAATTGTGTCGA+GGG + chr4_4:31337636-31337655 Msa0677460:CDS 50.0%
AGCCCTCGACACAATTCTAG+CGG - chr4_4:31337641-31337660 None:intergenic 50.0%
! GTCTTTGGTTGATGTTGGCG+GGG + chr4_4:31337699-31337718 Msa0677460:CDS 50.0%
! TCTTTGGTTGATGTTGGCGG+GGG + chr4_4:31337700-31337719 Msa0677460:CDS 50.0%
GATGGTATCACCCATGTTGG+AGG + chr4_4:31337820-31337839 Msa0677460:CDS 50.0%
! GGCAGTGGATTCTTCATGAC+TGG + chr4_4:31338019-31338038 Msa0677460:intron 50.0%
!! GCTATCCCAGTGTCGGTAAA+TGG - chr4_4:31338153-31338172 None:intergenic 50.0%
! ATGTTGCTTGCTCACAACGC+TGG + chr4_4:31338183-31338202 Msa0677460:CDS 50.0%
TGCTCTGCCATGCATCATTG+AGG + chr4_4:31338287-31338306 Msa0677460:CDS 50.0%
GGGAATGCCTCAATGATGCA+TGG - chr4_4:31338297-31338316 None:intergenic 50.0%
TATGATTCATGCATGGGGGG+AGG + chr4_4:31338488-31338507 Msa0677460:three_prime_UTR 50.0%
CACACACTTGGGGCAATGTG+TGG + chr4_4:31332541-31332560 Msa0677460:five_prime_UTR 55.0%
CTATAGGACGGGTGGCACTT+TGG - chr4_4:31332600-31332619 None:intergenic 55.0%
GGCAGAAGGTGGTGAGTGTT+TGG - chr4_4:31333473-31333492 None:intergenic 55.0%
CTCACCACCTTCTGCCTTCA+AGG + chr4_4:31333477-31333496 Msa0677460:CDS 55.0%
CTACGCACCTTGAAGGCAGA+AGG - chr4_4:31333487-31333506 None:intergenic 55.0%
CCAGTGGCCATAAAAGCCAC+TGG - chr4_4:31333754-31333773 None:intergenic 55.0%
! CCAGTGGCTTTTATGGCCAC+TGG + chr4_4:31333751-31333770 Msa0677460:intron 55.0%
CTTCTTCCTTGCTCACACCC+TGG - chr4_4:31337123-31337142 None:intergenic 55.0%
GCACCGCTAGAATTGTGTCG+AGG + chr4_4:31337635-31337654 Msa0677460:CDS 55.0%
GTGTCGAGGGCTGTTATTGC+TGG + chr4_4:31337649-31337668 Msa0677460:CDS 55.0%
! GTTGATGTTGGCGGGGGTAT+CGG + chr4_4:31337706-31337725 Msa0677460:CDS 55.0%
TTGCTTGCTCACAACGCTGG+TGG + chr4_4:31338186-31338205 Msa0677460:CDS 55.0%
! GGCACCGTGCCATTACATCC+TGG + chr4_4:31332486-31332505 Msa0677460:five_prime_UTR 60.0%
! GTTGGGTGCCATCAATGGCC+AGG - chr4_4:31332507-31332526 None:intergenic 60.0%
CGCACCTTGAAGGCAGAAGG+TGG - chr4_4:31333484-31333503 None:intergenic 60.0%
GGGGCCGTTGAAACCACATG+AGG - chr4_4:31337793-31337812 None:intergenic 60.0%
! CATGCATGGGGGGAGGCTTT+TGG + chr4_4:31338495-31338514 Msa0677460:three_prime_UTR 60.0%
GTGGGAGGGACCAAAACGGG+TGG - chr4_4:31336070-31336089 None:intergenic 65.0%
!! GATGTTGGCGGGGGTATCGG+AGG + chr4_4:31337709-31337728 Msa0677460:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 31329889 31338696 31329889 ID=Msa0677460;Name=Msa0677460
chr4_4 mRNA 31329889 31338696 31329889 ID=Msa0677460-mRNA-1;Parent=Msa0677460;Name=Msa0677460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=3534|1|1|1|0.66|0.5|4|373|369
chr4_4 exon 31329889 31332074 31329889 ID=Msa0677460-mRNA-1:exon:7787;Parent=Msa0677460-mRNA-1
chr4_4 exon 31332106 31333498 31332106 ID=Msa0677460-mRNA-1:exon:7788;Parent=Msa0677460-mRNA-1
chr4_4 exon 31337124 31337888 31337124 ID=Msa0677460-mRNA-1:exon:7789;Parent=Msa0677460-mRNA-1
chr4_4 exon 31338024 31338696 31338024 ID=Msa0677460-mRNA-1:exon:7790;Parent=Msa0677460-mRNA-1
chr4_4 five_prime_UTR 31329889 31332074 31329889 ID=Msa0677460-mRNA-1:five_prime_utr;Parent=Msa0677460-mRNA-1
chr4_4 five_prime_UTR 31332106 31333453 31332106 ID=Msa0677460-mRNA-1:five_prime_utr;Parent=Msa0677460-mRNA-1
chr4_4 CDS 31333454 31333498 31333454 ID=Msa0677460-mRNA-1:cds;Parent=Msa0677460-mRNA-1
chr4_4 CDS 31337124 31337888 31337124 ID=Msa0677460-mRNA-1:cds;Parent=Msa0677460-mRNA-1
chr4_4 CDS 31338024 31338323 31338024 ID=Msa0677460-mRNA-1:cds;Parent=Msa0677460-mRNA-1
chr4_4 three_prime_UTR 31338324 31338696 31338324 ID=Msa0677460-mRNA-1:three_prime_utr;Parent=Msa0677460-mRNA-1
Gene Sequence

>Msa0677460

ATGGAGACTGTTCTTTCCAAACACTCACCACCTTCTGCCTTCAAGGGTGTGAGCAAGGAAGAAGAAGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTCGTGGAGCTACGCATAGCCGATATTATAGACCGTTATGGCAAACCACTATCCTTAACTCAAATTGTGCAGAATCTTGAAGATGCACCTTCCCCTGATTCCACTCTACTTTTAAGAGTAATGAGAGTCATGGTTCGTAGAAAGATTTTCAGTGCAGAAAAATCAGAAACCGGGGAAATTCTCTACGGCTTGACACGTGCATCAAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTTTATTAGTGAAATTATAAAAGAAGGCACAAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACGGGGTTGGACTCGAAATACAATGACTTGTTCAACCAAGGTATGGTTTGCACCGCTAGAATTGTGTCGAGGGCTGTTATTGCTGGATACAAAGATGGGTTTAACCAAATTAAGTCTTTGGTTGATGTTGGCGGGGGTATCGGAGGATCTCTCTCCGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTGGTTTCAACGGCCCCTAATTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTGTCAGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGAAAGGCAATACCAGAGAAAACAGGAAAGGTGATCATTGTGGATCATGTATTGGACCCAGAAGGAAATGAACCATTTACCGACACTGGGATAGCATTTGACATGATGTTGCTTGCTCACAACGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGAAATACTTATTCAACGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATGCATCATTGAGGCATTCCCAGTCTAA
Protein sequence

>Msa0677460

METVLSKHSPPSAFKGVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLEDAPSPDSTLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANFISEIIKEGTKNGTAFFRCHGHEQFEMTGLDSKYNDLFNQGMVCTARIVSRAVIAGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFNETGFPRYNIIKINALPCIIEAFPV*