Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434380 | KEH32452.1 | 93.355 | 301 | 1 | 2 | 1 | 283 | 1 | 300 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434380 | sp|Q8L8A6|GRF5_ARATH | 71.053 | 114 | 27 | 3 | 7 | 117 | 14 | 124 | 5.99e-52 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434380 | A0A072US13 | 93.355 | 301 | 1 | 2 | 1 | 283 | 1 | 300 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1434380 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa1434380 | 0.819643 | 1.042670e-52 | -8.615850e-47 |
| Msa0015570 | Msa1434380 | 0.802655 | 5.060585e-49 | -8.615850e-47 |
| Msa0018920 | Msa1434380 | 0.813896 | 2.028973e-51 | -8.615850e-47 |
| Msa0020540 | Msa1434380 | 0.803616 | 3.202616e-49 | -8.615850e-47 |
| Msa0053070 | Msa1434380 | 0.810822 | 9.523054e-51 | -8.615850e-47 |
| Msa0067060 | Msa1434380 | 0.816528 | 5.278418e-52 | -8.615850e-47 |
| Msa0091350 | Msa1434380 | 0.801883 | 7.296682e-49 | -8.615850e-47 |
| Msa0098410 | Msa1434380 | 0.836193 | 1.079818e-56 | -8.615850e-47 |
| Msa0112670 | Msa1434380 | 0.803873 | 2.831481e-49 | -8.615850e-47 |
| Msa1361930 | Msa1434380 | 0.809722 | 1.644400e-50 | -8.615850e-47 |
| Msa1381470 | Msa1434380 | 0.808110 | 3.637314e-50 | -8.615850e-47 |
| Msa1393560 | Msa1434380 | 0.827097 | 1.888020e-54 | -8.615850e-47 |
| Msa1399190 | Msa1434380 | 0.813538 | 2.432791e-51 | -8.615850e-47 |
| Msa1434380 | Msa1434640 | 0.805376 | 1.375209e-49 | -8.615850e-47 |
| Msa0606100 | Msa1434380 | 0.843647 | 1.232354e-58 | -8.615850e-47 |
| Msa0608350 | Msa1434380 | 0.803332 | 3.666674e-49 | -8.615850e-47 |
| Msa0613630 | Msa1434380 | 0.805362 | 1.384786e-49 | -8.615850e-47 |
| Msa0615630 | Msa1434380 | 0.841193 | 5.513139e-58 | -8.615850e-47 |
| Msa0620500 | Msa1434380 | 0.831081 | 2.043278e-55 | -8.615850e-47 |
| Msa0622920 | Msa1434380 | 0.824181 | 9.278692e-54 | -8.615850e-47 |
| Msa0647050 | Msa1434380 | 0.828938 | 6.805907e-55 | -8.615850e-47 |
| Msa0648760 | Msa1434380 | 0.815325 | 9.796685e-52 | -8.615850e-47 |
| Msa0654740 | Msa1434380 | 0.812988 | 3.212976e-51 | -8.615850e-47 |
| Msa0657210 | Msa1434380 | 0.815536 | 8.790580e-52 | -8.615850e-47 |
| Msa0668900 | Msa1434380 | 0.803646 | 3.157104e-49 | -8.615850e-47 |
| Msa0691270 | Msa1434380 | 0.806601 | 7.601128e-50 | -8.615850e-47 |
| Msa0698730 | Msa1434380 | 0.802561 | 5.290965e-49 | -8.615850e-47 |
| Msa0701250 | Msa1434380 | 0.820989 | 5.123911e-53 | -8.615850e-47 |
| Msa0713920 | Msa1434380 | 0.813772 | 2.160696e-51 | -8.615850e-47 |
| Msa0717900 | Msa1434380 | 0.817462 | 3.256069e-52 | -8.615850e-47 |
| Msa0747740 | Msa1434380 | 0.829884 | 4.009696e-55 | -8.615850e-47 |
| Msa0816080 | Msa1434380 | 0.817287 | 3.566257e-52 | -8.615850e-47 |
| Msa0818150 | Msa1434380 | 0.807029 | 6.171165e-50 | -8.615850e-47 |
| Msa0837680 | Msa1434380 | 0.805027 | 1.627726e-49 | -8.615850e-47 |
| Msa0153210 | Msa1434380 | 0.801055 | 1.078250e-48 | -8.615850e-47 |
| Msa0159590 | Msa1434380 | 0.814766 | 1.303575e-51 | -8.615850e-47 |
| Msa0159620 | Msa1434380 | 0.804114 | 2.523470e-49 | -8.615850e-47 |
| Msa0160160 | Msa1434380 | 0.808281 | 3.344760e-50 | -8.615850e-47 |
| Msa0160170 | Msa1434380 | 0.812195 | 4.790157e-51 | -8.615850e-47 |
| Msa0168050 | Msa1434380 | 0.800761 | 1.238655e-48 | -8.615850e-47 |
| Msa0186360 | Msa1434380 | 0.807809 | 4.216919e-50 | -8.615850e-47 |
| Msa1254420 | Msa1434380 | 0.808566 | 2.907787e-50 | -8.615850e-47 |
| Msa1254540 | Msa1434380 | 0.816650 | 4.956447e-52 | -8.615850e-47 |
| Msa1261050 | Msa1434380 | 0.817676 | 2.914954e-52 | -8.615850e-47 |
| Msa1266300 | Msa1434380 | 0.892774 | 1.163877e-74 | -8.615850e-47 |
| Msa1266690 | Msa1434380 | 0.802303 | 5.981037e-49 | -8.615850e-47 |
| Msa1267930 | Msa1434380 | 0.819338 | 1.223882e-52 | -8.615850e-47 |
| Msa1268540 | Msa1434380 | 0.811316 | 7.440194e-51 | -8.615850e-47 |
| Msa1294790 | Msa1434380 | 0.809218 | 2.108817e-50 | -8.615850e-47 |
| Msa1300460 | Msa1434380 | 0.833076 | 6.565023e-56 | -8.615850e-47 |
| Msa1301820 | Msa1434380 | 0.804396 | 2.203799e-49 | -8.615850e-47 |
| Msa1305920 | Msa1434380 | 0.821529 | 3.847847e-53 | -8.615850e-47 |
| Msa1332950 | Msa1434380 | 0.822311 | 2.535100e-53 | -8.615850e-47 |
| Msa1339170 | Msa1434380 | 0.833719 | 4.536583e-56 | -8.615850e-47 |
| Msa0373170 | Msa1434380 | 0.846119 | 2.653207e-59 | -8.615850e-47 |
| Msa0421750 | Msa1434380 | 0.847632 | 1.023019e-59 | -8.615850e-47 |
| Msa0433760 | Msa1434380 | 0.815944 | 7.131191e-52 | -8.615850e-47 |
| Msa0456670 | Msa1434380 | 0.807125 | 5.890072e-50 | -8.615850e-47 |
| Msa0467690 | Msa1434380 | 0.844122 | 9.189236e-59 | -8.615850e-47 |
| Msa0477630 | Msa1434380 | 0.807999 | 3.841664e-50 | -8.615850e-47 |
| Msa1000780 | Msa1434380 | 0.803816 | 2.910407e-49 | -8.615850e-47 |
| Msa1000970 | Msa1434380 | 0.801031 | 1.090532e-48 | -8.615850e-47 |
| Msa1008670 | Msa1434380 | 0.822458 | 2.343831e-53 | -8.615850e-47 |
| Msa1036090 | Msa1434380 | 0.821061 | 4.932846e-53 | -8.615850e-47 |
| Msa1060900 | Msa1434380 | 0.813175 | 2.924182e-51 | -8.615850e-47 |
| Msa1076020 | Msa1434380 | 0.822771 | 1.981526e-53 | -8.615850e-47 |
| Msa1078880 | Msa1434380 | 0.815159 | 1.066386e-51 | -8.615850e-47 |
| Msa1078970 | Msa1434380 | 0.806550 | 7.789027e-50 | -8.615850e-47 |
| Msa1082380 | Msa1434380 | 0.809428 | 1.901892e-50 | -8.615850e-47 |
| Msa0344110 | Msa1434380 | 0.802191 | 6.307177e-49 | -8.615850e-47 |
| Msa1127280 | Msa1434380 | 0.815735 | 7.940034e-52 | -8.615850e-47 |
| Msa1139050 | Msa1434380 | 0.804170 | 2.456673e-49 | -8.615850e-47 |
| Msa1148630 | Msa1434380 | 0.824652 | 7.187225e-54 | -8.615850e-47 |
| Msa1149450 | Msa1434380 | 0.817800 | 2.732201e-52 | -8.615850e-47 |
| Msa1159590 | Msa1434380 | 0.805703 | 1.174335e-49 | -8.615850e-47 |
| Msa1162880 | Msa1434380 | 0.808772 | 2.627753e-50 | -8.615850e-47 |
| Msa1163180 | Msa1434380 | 0.828493 | 8.717125e-55 | -8.615850e-47 |
| Msa1165480 | Msa1434380 | 0.822712 | 2.045764e-53 | -8.615850e-47 |
| Msa1169190 | Msa1434380 | 0.815802 | 7.669571e-52 | -8.615850e-47 |
| Msa1190390 | Msa1434380 | 0.821302 | 4.340077e-53 | -8.615850e-47 |
| Msa1191000 | Msa1434380 | 0.823585 | 1.279996e-53 | -8.615850e-47 |
| Msa1213830 | Msa1434380 | 0.820326 | 7.277529e-53 | -8.615850e-47 |
| Msa1214350 | Msa1434380 | 0.814764 | 1.304516e-51 | -8.615850e-47 |
| Msa1215980 | Msa1434380 | 0.832216 | 1.073091e-55 | -8.615850e-47 |
| Msa1218820 | Msa1434380 | 0.800839 | 1.194034e-48 | -8.615850e-47 |
| Msa1220030 | Msa1434380 | 0.987990 | 2.701212e-172 | -8.615850e-47 |
| Msa1220170 | Msa1434380 | 0.886212 | 4.164035e-72 | -8.615850e-47 |
| Msa1223390 | Msa1434380 | 0.801684 | 8.017949e-49 | -8.615850e-47 |
| Msa0513560 | Msa1434380 | 0.807183 | 5.725798e-50 | -8.615850e-47 |
| Msa0513620 | Msa1434380 | 0.810213 | 1.289060e-50 | -8.615850e-47 |
| Msa0514020 | Msa1434380 | 0.842160 | 3.063561e-58 | -8.615850e-47 |
| Msa0514500 | Msa1434380 | 0.801381 | 9.249727e-49 | -8.615850e-47 |
| Msa0521680 | Msa1434380 | 0.810723 | 1.000136e-50 | -8.615850e-47 |
| Msa0527850 | Msa1434380 | 0.810138 | 1.338011e-50 | -8.615850e-47 |
| Msa0534100 | Msa1434380 | 0.801826 | 7.497313e-49 | -8.615850e-47 |
| Msa0541740 | Msa1434380 | 0.819798 | 9.609872e-53 | -8.615850e-47 |
| Msa0550590 | Msa1434380 | 0.829036 | 6.444055e-55 | -8.615850e-47 |
| Msa0554300 | Msa1434380 | 0.807010 | 6.227103e-50 | -8.615850e-47 |
| Msa0561560 | Msa1434380 | 0.826208 | 3.076730e-54 | -8.615850e-47 |
| Msa0563740 | Msa1434380 | 0.801708 | 7.927036e-49 | -8.615850e-47 |
| Msa0563900 | Msa1434380 | 0.804063 | 2.585912e-49 | -8.615850e-47 |
| Msa0564980 | Msa1434380 | 0.809575 | 1.768264e-50 | -8.615850e-47 |
| Msa0572830 | Msa1434380 | 0.821718 | 3.478509e-53 | -8.615850e-47 |
| Msa0577280 | Msa1434380 | 0.827349 | 1.643465e-54 | -8.615850e-47 |
| Msa0577330 | Msa1434380 | 0.829906 | 3.960824e-55 | -8.615850e-47 |
| Msa0582460 | Msa1434380 | 0.806731 | 7.133533e-50 | -8.615850e-47 |
| Msa0586200 | Msa1434380 | 0.815738 | 7.924607e-52 | -8.615850e-47 |
| Msa0590200 | Msa1434380 | 0.800796 | 1.218498e-48 | -8.615850e-47 |
| Msa0861440 | Msa1434380 | 0.800391 | 1.473420e-48 | -8.615850e-47 |
| Msa0863620 | Msa1434380 | 0.800855 | 1.184834e-48 | -8.615850e-47 |
| Msa0901150 | Msa1434380 | 0.800273 | 1.557012e-48 | -8.615850e-47 |
| Msa0926310 | Msa1434380 | 0.817960 | 2.514053e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434380 | MtrunA17_Chr4g0070591 | 93.355 | 301 | 1 | 2 | 1 | 283 | 1 | 300 | 0.0 | 570 |
| Msa1434380 | MtrunA17_Chr2g0300511 | 60.656 | 305 | 84 | 10 | 5 | 278 | 3 | 302 | 1.17e-105 | 311 |
| Msa1434380 | MtrunA17_Chr8g0343881 | 70.161 | 124 | 29 | 4 | 1 | 119 | 1 | 121 | 8.86e-56 | 183 |
| Msa1434380 | MtrunA17_Chr4g0021261 | 40.433 | 277 | 138 | 9 | 9 | 279 | 25 | 280 | 5.66e-52 | 173 |
| Msa1434380 | MtrunA17_Chr5g0409471 | 36.508 | 252 | 141 | 5 | 9 | 259 | 16 | 249 | 1.94e-40 | 142 |
| Msa1434380 | MtrunA17_Chr1g0152191 | 56.897 | 116 | 44 | 2 | 7 | 117 | 142 | 256 | 2.45e-40 | 148 |
| Msa1434380 | MtrunA17_Chr7g0265931 | 52.206 | 136 | 44 | 4 | 6 | 127 | 68 | 196 | 1.53e-37 | 136 |
| Msa1434380 | MtrunA17_Chr3g0127641 | 48.739 | 119 | 42 | 4 | 9 | 127 | 112 | 211 | 6.31e-28 | 112 |
| Msa1434380 | MtrunA17_Chr8g0351521 | 45.536 | 112 | 47 | 3 | 6 | 117 | 51 | 148 | 1.30e-21 | 94.0 |
| Msa1434380 | MtrunA17_Chr8g0351521 | 45.714 | 70 | 29 | 1 | 73 | 142 | 302 | 362 | 2.17e-13 | 69.7 |
| Msa1434380 | MtrunA17_Chr8g0351291 | 64.103 | 39 | 14 | 0 | 73 | 111 | 51 | 89 | 8.76e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434380 | AT3G13960.1 | 71.053 | 114 | 27 | 3 | 7 | 117 | 14 | 124 | 6.09e-53 | 177 |
| Msa1434380 | AT2G06200.2 | 66.667 | 120 | 29 | 2 | 7 | 115 | 43 | 162 | 4.72e-49 | 164 |
| Msa1434380 | AT2G06200.1 | 66.667 | 120 | 29 | 2 | 7 | 115 | 4 | 123 | 6.19e-49 | 163 |
| Msa1434380 | AT4G37740.1 | 54.264 | 129 | 54 | 3 | 7 | 134 | 162 | 286 | 5.90e-42 | 151 |
| Msa1434380 | AT2G36400.1 | 57.377 | 122 | 43 | 3 | 10 | 125 | 77 | 195 | 2.12e-37 | 137 |
| Msa1434380 | AT2G22840.1 | 57.143 | 112 | 44 | 2 | 7 | 117 | 131 | 239 | 2.22e-35 | 133 |
| Msa1434380 | AT3G52910.1 | 53.390 | 118 | 39 | 3 | 10 | 117 | 83 | 194 | 1.14e-33 | 126 |
| Msa1434380 | AT5G53660.1 | 50.000 | 110 | 38 | 2 | 8 | 117 | 58 | 150 | 1.90e-27 | 109 |
| Msa1434380 | AT2G06200.3 | 92.157 | 51 | 2 | 1 | 67 | 115 | 1 | 51 | 1.43e-26 | 102 |
| Msa1434380 | AT4G24150.3 | 42.149 | 121 | 64 | 2 | 2 | 117 | 104 | 223 | 1.85e-23 | 99.4 |
| Msa1434380 | AT4G24150.2 | 42.149 | 121 | 64 | 2 | 2 | 117 | 142 | 261 | 2.63e-23 | 99.4 |
| Msa1434380 | AT4G24150.1 | 36.986 | 146 | 61 | 3 | 2 | 117 | 142 | 286 | 2.84e-21 | 93.6 |
| Msa1434380 | AT2G45480.2 | 41.441 | 111 | 64 | 1 | 5 | 114 | 19 | 129 | 6.65e-19 | 85.1 |
| Msa1434380 | AT2G45480.3 | 41.441 | 111 | 64 | 1 | 5 | 114 | 19 | 129 | 2.96e-18 | 84.7 |
| Msa1434380 | AT2G45480.3 | 41.935 | 93 | 42 | 3 | 70 | 155 | 303 | 390 | 3.19e-13 | 69.7 |
| Msa1434380 | AT2G45480.1 | 41.441 | 111 | 64 | 1 | 5 | 114 | 17 | 127 | 2.96e-18 | 84.7 |
| Msa1434380 | AT2G45480.1 | 41.935 | 93 | 42 | 3 | 70 | 155 | 301 | 388 | 3.26e-13 | 69.7 |
Find 63 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGGAACAGGTATGTTTA+TGG | 0.231611 | tig0027530:+26261 | Msa1434380:intron |
| TGCCACTGAGTTGGAGTAAA+AGG | 0.276188 | tig0027530:-25188 | None:intergenic |
| CTTCTGCACCTCCCTGGCTC+TGG | 0.278943 | tig0027530:-25473 | None:intergenic |
| GCTTTCTTCACTGAACCTTC+TGG | 0.302685 | tig0027530:+26309 | Msa1434380:CDS |
| CTTTCACAGTACTTTGAATC+TGG | 0.319625 | tig0027530:-25536 | None:intergenic |
| AAAAGAGGAAGAGGAGCTTA+TGG | 0.356828 | tig0027530:-26391 | None:intergenic |
| CTTCTTCAATGGATGATTCA+TGG | 0.368355 | tig0027530:+26352 | Msa1434380:CDS |
| TTCTGCACCTCCCTGGCTCT+GGG | 0.368474 | tig0027530:-25472 | None:intergenic |
| ATCTACAAATACATGGCTTC+TGG | 0.368517 | tig0027530:+25233 | Msa1434380:CDS |
| TTGTCTTGAAATGAGAAGTT+AGG | 0.391585 | tig0027530:-25812 | None:intergenic |
| AGAGGAAAGGGTGGTTAAGA+TGG | 0.391821 | tig0027530:-25766 | None:intergenic |
| GAACTATTTACCAATGGGAT+TGG | 0.400450 | tig0027530:+25436 | Msa1434380:CDS |
| TTTAAACAGAGAAATTGTTC+TGG | 0.401538 | tig0027530:+26411 | Msa1434380:CDS |
| AACTATTTACCAATGGGATT+GGG | 0.420553 | tig0027530:+25437 | Msa1434380:CDS |
| GCCTTGAGGATGGAGGGTTA+TGG | 0.442680 | tig0027530:-25790 | None:intergenic |
| AAGTTTATCAGCTTCTTCAA+TGG | 0.445043 | tig0027530:+26341 | Msa1434380:CDS |
| GAGGGTTATGGTAGAGGAAA+GGG | 0.446918 | tig0027530:-25778 | None:intergenic |
| TTGATAGTGAGTAGAAGATC+AGG | 0.446923 | tig0027530:-25269 | None:intergenic |
| AAGCATAAGAAGAGTGTTGA+GGG | 0.452542 | tig0027530:-25739 | None:intergenic |
| TCTGTTCTTCTGCACCTCCC+TGG | 0.454328 | tig0027530:-25479 | None:intergenic |
| ACAATTTCTCTGTTTAAAAG+AGG | 0.457057 | tig0027530:-26406 | None:intergenic |
| GAGGAAAGGGTGGTTAAGAT+GGG | 0.457253 | tig0027530:-25765 | None:intergenic |
| GAGTAGAAGATCAGGAGGAA+TGG | 0.465599 | tig0027530:-25261 | None:intergenic |
| GTAAGAGTACTCATTGTCAT+TGG | 0.465700 | tig0027530:-26439 | None:intergenic |
| CTTCCACAGGCTTTCTTGAA+CGG | 0.472599 | tig0027530:-25580 | None:intergenic |
| GGATGGAACTATTTACCAAT+GGG | 0.479254 | tig0027530:+25431 | Msa1434380:CDS |
| CAATGATGAATGGAAGAAAC+AGG | 0.479723 | tig0027530:+25162 | Msa1434380:exon |
| GAAGAACAGATGGAAAGAAA+TGG | 0.480263 | tig0027530:+25492 | Msa1434380:CDS |
| AAGAAGAGTGTTGAGGGTAA+TGG | 0.482978 | tig0027530:-25733 | None:intergenic |
| GATCAAGGTTGTTACATCTC+AGG | 0.490399 | tig0027530:+26498 | Msa1434380:CDS |
| TCTCTGTTTAAAAGAGGAAG+AGG | 0.498513 | tig0027530:-26400 | None:intergenic |
| TAACAAACAACAATGATGAA+TGG | 0.501615 | tig0027530:+25152 | Msa1434380:exon |
| AGGATGGAGGGTTATGGTAG+AGG | 0.503413 | tig0027530:-25784 | None:intergenic |
| GTGTGGTGCATGCAGTTGGA+TGG | 0.510680 | tig0027530:+25414 | Msa1434380:intron |
| TCAAGCTCTTGCCACTGAGT+TGG | 0.513392 | tig0027530:-25197 | None:intergenic |
| TTATGGACTGAAAGAGGAGG+TGG | 0.522907 | tig0027530:+26278 | Msa1434380:CDS |
| GAAGAGGAGCTTATGGTAAG+TGG | 0.526833 | tig0027530:-26384 | None:intergenic |
| AAGATTGTTGAAGTAGCAGC+AGG | 0.534940 | tig0027530:-25632 | None:intergenic |
| AAACAACCACAGCAAGATCA+AGG | 0.541674 | tig0027530:+26483 | Msa1434380:CDS |
| GTGAAAGGCACATGCATAGA+GGG | 0.547205 | tig0027530:+25552 | Msa1434380:CDS |
| AAGAGAAGAGAAGAGAAGAG+AGG | 0.547431 | tig0027530:-25117 | None:intergenic |
| GAAGCATAAGAAGAGTGTTG+AGG | 0.548399 | tig0027530:-25740 | None:intergenic |
| GGAGGGTTATGGTAGAGGAA+AGG | 0.556801 | tig0027530:-25779 | None:intergenic |
| GAACAGATGGAAAGAAATGG+AGG | 0.559737 | tig0027530:+25495 | Msa1434380:CDS |
| TGGATGGAACTATTTACCAA+TGG | 0.564553 | tig0027530:+25430 | Msa1434380:CDS |
| ATAGTGAGTAGAAGATCAGG+AGG | 0.571348 | tig0027530:-25266 | None:intergenic |
| CAGATTCAAAGTACTGTGAA+AGG | 0.571794 | tig0027530:+25537 | Msa1434380:CDS |
| GGGAGGTGCAGAAGAACAGA+TGG | 0.577454 | tig0027530:+25482 | Msa1434380:CDS |
| AAACTTCTTATAGTTCCAGA+AGG | 0.579842 | tig0027530:-26324 | None:intergenic |
| AAGTTAGGCCTTGAGGATGG+AGG | 0.587194 | tig0027530:-25797 | None:intergenic |
| ACCATAACCCTCCATCCTCA+AGG | 0.592083 | tig0027530:+25789 | Msa1434380:CDS |
| AAATGAGAAGTTAGGCCTTG+AGG | 0.594153 | tig0027530:-25804 | None:intergenic |
| AGTTAGGCCTTGAGGATGGA+GGG | 0.597805 | tig0027530:-25796 | None:intergenic |
| GTATGTTTATGGACTGAAAG+AGG | 0.601366 | tig0027530:+26272 | Msa1434380:CDS |
| GAGAAGTTAGGCCTTGAGGA+TGG | 0.604526 | tig0027530:-25800 | None:intergenic |
| AGCTCTTATCTACAAATACA+TGG | 0.606523 | tig0027530:+25226 | Msa1434380:CDS |
| TAACAACCTTGATCTTGCTG+TGG | 0.626299 | tig0027530:-26489 | None:intergenic |
| TGTGAAAGGCACATGCATAG+AGG | 0.626931 | tig0027530:+25551 | Msa1434380:CDS |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | tig0027530:+25577 | Msa1434380:CDS |
| TGTTTATGGACTGAAAGAGG+AGG | 0.650765 | tig0027530:+26275 | Msa1434380:CDS |
| AAATAGACCCAGAGCCAGGG+AGG | 0.659120 | tig0027530:+25465 | Msa1434380:CDS |
| GGTTATGGTAGAGGAAAGGG+TGG | 0.659870 | tig0027530:-25775 | None:intergenic |
| TTACAGTGTTGAGACTGATG+AGG | 0.793602 | tig0027530:-25323 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATAAAATAAAAAC+AGG | + | tig0027530:28792-28811 | Msa1434380:intron | 10.0% |
| !! | TATATATAGTCATTCATATA+TGG | - | tig0027530:25361-25380 | None:intergenic | 15.0% |
| !!! | AGTTTTTCTCAAATTATTAT+CGG | - | tig0027530:26855-26874 | None:intergenic | 15.0% |
| !! | ACAATGGTAAAAATTATTAT+TGG | - | tig0027530:26918-26937 | None:intergenic | 15.0% |
| !! | TAATTGAATGTAAATTATCA+TGG | + | tig0027530:27053-27072 | Msa1434380:intron | 15.0% |
| !!! | TGATTAATGTGTTAAAATTT+TGG | + | tig0027530:27710-27729 | Msa1434380:intron | 15.0% |
| !!! | GATTAATGTGTTAAAATTTT+GGG | + | tig0027530:27711-27730 | Msa1434380:intron | 15.0% |
| !!! | TTAAAAATTAGTTTCATAGT+AGG | - | tig0027530:27908-27927 | None:intergenic | 15.0% |
| !!! | TATGAAACTAATTTTTAAGT+TGG | + | tig0027530:27910-27929 | Msa1434380:intron | 15.0% |
| !! | AAATAATTCAATAAGAAGTT+TGG | - | tig0027530:27969-27988 | None:intergenic | 15.0% |
| !!! | TTGTATTAGTTTTAAAAGAA+AGG | + | tig0027530:28393-28412 | Msa1434380:intron | 15.0% |
| !!! | TTTAAAGTTTTTCTTACATA+TGG | - | tig0027530:28588-28607 | None:intergenic | 15.0% |
| !! | AAAATAGGGTTATTAATTAT+TGG | + | tig0027530:28894-28913 | Msa1434380:intron | 15.0% |
| !! | AGAAATATATATGATAGTAT+AGG | + | tig0027530:29136-29155 | Msa1434380:intron | 15.0% |
| !!! | TTAAGTTGTTTATTCAAACA+TGG | - | tig0027530:25940-25959 | None:intergenic | 20.0% |
| !!! | CTTATCGATTATAAACTTAT+AGG | - | tig0027530:26012-26031 | None:intergenic | 20.0% |
| !! | AGAGAACTTATAAAAATAAG+TGG | + | tig0027530:26070-26089 | Msa1434380:intron | 20.0% |
| !!! | TTTATGAAAGATTCTCTTTT+TGG | + | tig0027530:26223-26242 | Msa1434380:intron | 20.0% |
| !!! | ACTAATTTTTAAGTTGGTAA+TGG | + | tig0027530:27916-27935 | Msa1434380:intron | 20.0% |
| !! | AACTATAAAAACATCACATT+GGG | - | tig0027530:28263-28282 | None:intergenic | 20.0% |
| !! | AAACTATAAAAACATCACAT+TGG | - | tig0027530:28264-28283 | None:intergenic | 20.0% |
| !! | TCTATAACAAATCTAACAAT+TGG | + | tig0027530:28649-28668 | Msa1434380:intron | 20.0% |
| !! | CTATAACAAATCTAACAATT+GGG | + | tig0027530:28650-28669 | Msa1434380:intron | 20.0% |
| !! | TAGTATTACTACAAGAAAAT+AGG | + | tig0027530:28879-28898 | Msa1434380:intron | 20.0% |
| !! | AGTATTACTACAAGAAAATA+GGG | + | tig0027530:28880-28899 | Msa1434380:intron | 20.0% |
| ! | TAACAAACAACAATGATGAA+TGG | + | tig0027530:25152-25171 | Msa1434380:exon | 25.0% |
| ! | CTTTAAACCAACACATATTT+AGG | + | tig0027530:25914-25933 | Msa1434380:intron | 25.0% |
| ! | ACAATTTCTCTGTTTAAAAG+AGG | - | tig0027530:26409-26428 | None:intergenic | 25.0% |
| ! | TTTAAACAGAGAAATTGTTC+TGG | + | tig0027530:26411-26430 | Msa1434380:CDS | 25.0% |
| ! | AAGAAACATTCATGAAACAT+GGG | + | tig0027530:26526-26545 | Msa1434380:intron | 25.0% |
| !!! | TATTATTGGTGTCAATGTAT+CGG | - | tig0027530:27019-27038 | None:intergenic | 25.0% |
| ! | TGAGTTTCGCAAATTATTAT+TGG | - | tig0027530:27033-27052 | None:intergenic | 25.0% |
| ! | GACCTTAGATTCAATTAAAA+GGG | - | tig0027530:27157-27176 | None:intergenic | 25.0% |
| ! | TGACCTTAGATTCAATTAAA+AGG | - | tig0027530:27158-27177 | None:intergenic | 25.0% |
| !! | GTTCATTCATATTTTCTGTA+AGG | + | tig0027530:27214-27233 | Msa1434380:intron | 25.0% |
| ! | TAGTTAGAATATTTGACCTA+TGG | + | tig0027530:27795-27814 | Msa1434380:intron | 25.0% |
| !!! | TTTATTGGCTCCTATTTTAT+CGG | + | tig0027530:27996-28015 | Msa1434380:intron | 25.0% |
| ! | ATTAAGTTCTTATCACCAAA+AGG | - | tig0027530:28052-28071 | None:intergenic | 25.0% |
| !! | TAAGTGCGTTTTTGATATTA+CGG | - | tig0027530:28308-28327 | None:intergenic | 25.0% |
| ! | AAATTCAAAACAAACATCGA+GGG | - | tig0027530:28374-28393 | None:intergenic | 25.0% |
| ! | AAAATTCAAAACAAACATCG+AGG | - | tig0027530:28375-28394 | None:intergenic | 25.0% |
| !!! | TTTTAAAAGAAAGGTTTACC+TGG | + | tig0027530:28402-28421 | Msa1434380:intron | 25.0% |
| ! | TTTGAGAAGGACAATATAAT+TGG | - | tig0027530:28748-28767 | None:intergenic | 25.0% |
| !! | ATTTAAAATCTCACTCACTT+TGG | - | tig0027530:28989-29008 | None:intergenic | 25.0% |
| ! | AAATTGTTAGCAAAGTCTAA+AGG | - | tig0027530:29059-29078 | None:intergenic | 25.0% |
| ! | AATGCAATTGTACACAATAA+AGG | + | tig0027530:29191-29210 | Msa1434380:intron | 25.0% |
| !!! | TTTGATTTTGATTATGAACG+TGG | + | tig0027530:29284-29303 | Msa1434380:intron | 25.0% |
| AGCTCTTATCTACAAATACA+TGG | + | tig0027530:25226-25245 | Msa1434380:CDS | 30.0% | |
| ! | TATGTATGCACTTGTTGATT+TGG | + | tig0027530:25392-25411 | Msa1434380:intron | 30.0% |
| AACTATTTACCAATGGGATT+GGG | + | tig0027530:25437-25456 | Msa1434380:CDS | 30.0% | |
| TTGTCTTGAAATGAGAAGTT+AGG | - | tig0027530:25815-25834 | None:intergenic | 30.0% | |
| TCAAATAGTCCAATCCAAAA+AGG | + | tig0027530:26162-26181 | Msa1434380:intron | 30.0% | |
| ! | GGTATTGTTGTTATCTTTGA+AGG | + | tig0027530:26244-26263 | Msa1434380:intron | 30.0% |
| AAACTTCTTATAGTTCCAGA+AGG | - | tig0027530:26327-26346 | None:intergenic | 30.0% | |
| AAGTTTATCAGCTTCTTCAA+TGG | + | tig0027530:26341-26360 | Msa1434380:CDS | 30.0% | |
| GAAGAAACATTCATGAAACA+TGG | + | tig0027530:26525-26544 | Msa1434380:intron | 30.0% | |
| AAACGATGAAAAATCTTCTG+AGG | - | tig0027530:26561-26580 | None:intergenic | 30.0% | |
| TTCATCGTTTCTTTGATGAA+TGG | + | tig0027530:26571-26590 | Msa1434380:intron | 30.0% | |
| TTTCCTCAAATTATCACCTA+TGG | - | tig0027530:26792-26811 | None:intergenic | 30.0% | |
| AGTGATTAGTGATTTCTCAT+TGG | + | tig0027530:27079-27098 | Msa1434380:intron | 30.0% | |
| !! | ATTTCTCATTGGCTTGAATT+TGG | + | tig0027530:27090-27109 | Msa1434380:intron | 30.0% |
| !! | GTCCCTTTTAATTGAATCTA+AGG | + | tig0027530:27152-27171 | Msa1434380:intron | 30.0% |
| AACAACACATGTACAATAGT+GGG | - | tig0027530:27279-27298 | None:intergenic | 30.0% | |
| !! | TAAAATTTTGGGTGAAGATG+CGG | + | tig0027530:27722-27741 | Msa1434380:intron | 30.0% |
| ! | TACTTTGATAGTCTCATAGT+GGG | - | tig0027530:27861-27880 | None:intergenic | 30.0% |
| ! | ATACTTTGATAGTCTCATAG+TGG | - | tig0027530:27862-27881 | None:intergenic | 30.0% |
| ! | AGTCCTTCTGAAAACATATT+AGG | + | tig0027530:28202-28221 | Msa1434380:intron | 30.0% |
| ! | GTCCTTCTGAAAACATATTA+GGG | + | tig0027530:28203-28222 | Msa1434380:intron | 30.0% |
| TAAAAAACTGTATTCTGACC+AGG | - | tig0027530:28423-28442 | None:intergenic | 30.0% | |
| GTCAAAAAAACACATGCATA+AGG | + | tig0027530:28486-28505 | Msa1434380:intron | 30.0% | |
| !! | TAAATACCGTGTGTTTTGTT+TGG | + | tig0027530:28542-28561 | Msa1434380:intron | 30.0% |
| !!! | AAATACCGTGTGTTTTGTTT+GGG | + | tig0027530:28543-28562 | Msa1434380:intron | 30.0% |
| ! | GATTTTGTGTATCATTGCAA+CGG | + | tig0027530:28614-28633 | Msa1434380:intron | 30.0% |
| GTAAAAAAATGCTCCTGTTT+AGG | - | tig0027530:28772-28791 | None:intergenic | 30.0% | |
| AAGATATCTAACGTTATGCA+TGG | - | tig0027530:28819-28838 | None:intergenic | 30.0% | |
| !! | GTGTTGATGTGTATTTTGTT+TGG | - | tig0027530:28928-28947 | None:intergenic | 30.0% |
| TTGTGTACAATTGCATTACA+TGG | - | tig0027530:29188-29207 | None:intergenic | 30.0% | |
| CAATGATGAATGGAAGAAAC+AGG | + | tig0027530:25162-25181 | Msa1434380:exon | 35.0% | |
| ATCTACAAATACATGGCTTC+TGG | + | tig0027530:25233-25252 | Msa1434380:CDS | 35.0% | |
| !! | TTGATAGTGAGTAGAAGATC+AGG | - | tig0027530:25272-25291 | None:intergenic | 35.0% |
| TGGATGGAACTATTTACCAA+TGG | + | tig0027530:25430-25449 | Msa1434380:CDS | 35.0% | |
| GGATGGAACTATTTACCAAT+GGG | + | tig0027530:25431-25450 | Msa1434380:CDS | 35.0% | |
| GAACTATTTACCAATGGGAT+TGG | + | tig0027530:25436-25455 | Msa1434380:CDS | 35.0% | |
| ! | ATTTTTCTTCCCAATCCCAT+TGG | - | tig0027530:25449-25468 | None:intergenic | 35.0% |
| GAAGAACAGATGGAAAGAAA+TGG | + | tig0027530:25492-25511 | Msa1434380:CDS | 35.0% | |
| CTTTCACAGTACTTTGAATC+TGG | - | tig0027530:25539-25558 | None:intergenic | 35.0% | |
| !! | CAGATTCAAAGTACTGTGAA+AGG | + | tig0027530:25537-25556 | Msa1434380:CDS | 35.0% |
| !! | GTTGTTTTCAAAACTTCCAC+AGG | - | tig0027530:25596-25615 | None:intergenic | 35.0% |
| !! | AAGCATAAGAAGAGTGTTGA+GGG | - | tig0027530:25742-25761 | None:intergenic | 35.0% |
| CCAGTATTGTCAAGAAACAA+GGG | - | tig0027530:25845-25864 | None:intergenic | 35.0% | |
| ACCAGTATTGTCAAGAAACA+AGG | - | tig0027530:25846-25865 | None:intergenic | 35.0% | |
| ! | AGTGTTGTTGTTATTGTGAG+AGG | - | tig0027530:25873-25892 | None:intergenic | 35.0% |
| ! | ATAACAACAACACTGATTGC+AGG | + | tig0027530:25879-25898 | Msa1434380:intron | 35.0% |
| AACATGGCCTAAATATGTGT+TGG | - | tig0027530:25924-25943 | None:intergenic | 35.0% | |
| ! | CATCATGAACCTTTTTGGAT+TGG | - | tig0027530:26174-26193 | None:intergenic | 35.0% |
| CAATCCAAAAAGGTTCATGA+TGG | + | tig0027530:26172-26191 | Msa1434380:intron | 35.0% | |
| ! | GTTGTTATCTTTGAAGGAAC+AGG | + | tig0027530:26250-26269 | Msa1434380:intron | 35.0% |
| TGAAGGAACAGGTATGTTTA+TGG | + | tig0027530:26261-26280 | Msa1434380:intron | 35.0% | |
| ! | GTATGTTTATGGACTGAAAG+AGG | + | tig0027530:26272-26291 | Msa1434380:CDS | 35.0% |
| CTTCTTCAATGGATGATTCA+TGG | + | tig0027530:26352-26371 | Msa1434380:CDS | 35.0% | |
| TCTCTGTTTAAAAGAGGAAG+AGG | - | tig0027530:26403-26422 | None:intergenic | 35.0% | |
| !! | GTAAGAGTACTCATTGTCAT+TGG | - | tig0027530:26442-26461 | None:intergenic | 35.0% |
| ATCATGAGAAGATGTAGGAA+TGG | - | tig0027530:26667-26686 | None:intergenic | 35.0% | |
| GTGAAATCATGAGAAGATGT+AGG | - | tig0027530:26672-26691 | None:intergenic | 35.0% | |
| !! | ATTATCGGTGTTGATGTGTT+TGG | - | tig0027530:26840-26859 | None:intergenic | 35.0% |
| !!! | CTTGAATTTGGTTTTGCAGA+TGG | + | tig0027530:27102-27121 | Msa1434380:intron | 35.0% |
| ! | GTACAATAGTGGGATAAAGT+GGG | - | tig0027530:27269-27288 | None:intergenic | 35.0% |
| ! | TGTACAATAGTGGGATAAAG+TGG | - | tig0027530:27270-27289 | None:intergenic | 35.0% |
| CAACAACACATGTACAATAG+TGG | - | tig0027530:27280-27299 | None:intergenic | 35.0% | |
| ! | TTGTACATGTGTTGTTGAAG+TGG | + | tig0027530:27283-27302 | Msa1434380:intron | 35.0% |
| !! | TTGTTTGTTTCTGCCAAACA+TGG | + | tig0027530:27392-27411 | Msa1434380:intron | 35.0% |
| CTGAAAACTGAAACCATGTT+TGG | - | tig0027530:27408-27427 | None:intergenic | 35.0% | |
| TTCAGACTCTACCAGTTATT+TGG | + | tig0027530:27423-27442 | Msa1434380:intron | 35.0% | |
| TGAAACCACATAAACAGACA+CGG | - | tig0027530:27449-27468 | None:intergenic | 35.0% | |
| GTATGTGATGAGTACGTTAT+TGG | + | tig0027530:27496-27515 | Msa1434380:intron | 35.0% | |
| ATTGGATGCTAGCATTATGA+TGG | + | tig0027530:27514-27533 | Msa1434380:intron | 35.0% | |
| AACAAACAAACAAAACCCCA+GGG | - | tig0027530:27541-27560 | None:intergenic | 35.0% | |
| AAACAAACAAACAAAACCCC+AGG | - | tig0027530:27542-27561 | None:intergenic | 35.0% | |
| !! | TACTTTGAAGTGACTACCAT+AGG | - | tig0027530:27814-27833 | None:intergenic | 35.0% |
| !! | GAGAGTTGATAACATGATTG+AGG | - | tig0027530:27947-27966 | None:intergenic | 35.0% |
| ! | GTCCCTAATATGTTTTCAGA+AGG | - | tig0027530:28208-28227 | None:intergenic | 35.0% |
| !! | GGACTAAAGTTGATAGTAAG+TGG | + | tig0027530:28224-28243 | Msa1434380:intron | 35.0% |
| TTTCTCCCAAACAAAACACA+CGG | - | tig0027530:28551-28570 | None:intergenic | 35.0% | |
| !! | GTGTATTTTGTTTGGCTGAA+TGG | - | tig0027530:28920-28939 | None:intergenic | 35.0% |
| ! | ACATCTTATTCCTCTCCTTT+TGG | - | tig0027530:28953-28972 | None:intergenic | 35.0% |
| AAAAGGAGAGGAATAAGATG+TGG | + | tig0027530:28952-28971 | Msa1434380:intron | 35.0% | |
| GAATAAGATGTGGTCAAAGT+GGG | + | tig0027530:28962-28981 | Msa1434380:intron | 35.0% | |
| ! | TAATTTGTATCCTCTGACTC+AGG | + | tig0027530:29162-29181 | Msa1434380:intron | 35.0% |
| CAGTGCATGCTTTAGTAATA+AGG | + | tig0027530:29253-29272 | Msa1434380:intron | 35.0% | |
| !!! | GATTTTGATTATGAACGTGG+TGG | + | tig0027530:29287-29306 | Msa1434380:intron | 35.0% |
| !!! | GACACAGTTGTTGGTAATTT+TGG | + | tig0027530:29321-29340 | Msa1434380:intron | 35.0% |
| AAGAGAAGAGAAGAGAAGAG+AGG | - | tig0027530:25120-25139 | None:intergenic | 40.0% | |
| ! | ATCCTTTTACTCCAACTCAG+TGG | + | tig0027530:25186-25205 | Msa1434380:CDS | 40.0% |
| ATAGTGAGTAGAAGATCAGG+AGG | - | tig0027530:25269-25288 | None:intergenic | 40.0% | |
| ! | TTACAGTGTTGAGACTGATG+AGG | - | tig0027530:25326-25345 | None:intergenic | 40.0% |
| !! | ATGCACTTGTTGATTTGGTG+TGG | + | tig0027530:25397-25416 | Msa1434380:intron | 40.0% |
| GAACAGATGGAAAGAAATGG+AGG | + | tig0027530:25495-25514 | Msa1434380:CDS | 40.0% | |
| AAGATTGTTGAAGTAGCAGC+AGG | - | tig0027530:25635-25654 | None:intergenic | 40.0% | |
| !! | AAGAAGAGTGTTGAGGGTAA+TGG | - | tig0027530:25736-25755 | None:intergenic | 40.0% |
| !! | GAAGCATAAGAAGAGTGTTG+AGG | - | tig0027530:25743-25762 | None:intergenic | 40.0% |
| AAATGAGAAGTTAGGCCTTG+AGG | - | tig0027530:25807-25826 | None:intergenic | 40.0% | |
| ! | CCCTTGTTTCTTGACAATAC+TGG | + | tig0027530:25842-25861 | Msa1434380:intron | 40.0% |
| AAGCTATCGTTGAGACTGAA+TGG | + | tig0027530:26042-26061 | Msa1434380:intron | 40.0% | |
| ! | AGCACCATCATGAACCTTTT+TGG | - | tig0027530:26179-26198 | None:intergenic | 40.0% |
| ! | TGTTTATGGACTGAAAGAGG+AGG | + | tig0027530:26275-26294 | Msa1434380:CDS | 40.0% |
| AAAAGAGGAAGAGGAGCTTA+TGG | - | tig0027530:26394-26413 | None:intergenic | 40.0% | |
| AAACAACCACAGCAAGATCA+AGG | + | tig0027530:26483-26502 | Msa1434380:CDS | 40.0% | |
| TAACAACCTTGATCTTGCTG+TGG | - | tig0027530:26492-26511 | None:intergenic | 40.0% | |
| GATCAAGGTTGTTACATCTC+AGG | + | tig0027530:26498-26517 | Msa1434380:CDS | 40.0% | |
| !!! | CATGAGTTTCTGCTGCTTTT+GGG | - | tig0027530:26600-26619 | None:intergenic | 40.0% |
| CAGAAACTCATGGCTTGATT+TGG | + | tig0027530:26608-26627 | Msa1434380:intron | 40.0% | |
| AATGGAGATTGAAAGCTGAG+TGG | - | tig0027530:26649-26668 | None:intergenic | 40.0% | |
| ! | TTTAGTTCCACAAACCAACG+AGG | + | tig0027530:26696-26715 | Msa1434380:intron | 40.0% |
| AGAGAAACCATTTACCTCGT+TGG | - | tig0027530:26713-26732 | None:intergenic | 40.0% | |
| TCGCCATAGGTGATAATTTG+AGG | + | tig0027530:26786-26805 | Msa1434380:intron | 40.0% | |
| TGACTAGAGCATGTTGACAA+TGG | - | tig0027530:26934-26953 | None:intergenic | 40.0% | |
| ! | TTTTGCAGATGGTTGAGCTT+GGG | + | tig0027530:27113-27132 | Msa1434380:intron | 40.0% |
| TTGAGCTTGGGTTTCAATGA+TGG | + | tig0027530:27125-27144 | Msa1434380:intron | 40.0% | |
| !! | CTTGGGTTTCAATGATGGAT+GGG | + | tig0027530:27130-27149 | Msa1434380:intron | 40.0% |
| GGATATGATATGTGTCTCCA+TGG | + | tig0027530:27304-27323 | Msa1434380:intron | 40.0% | |
| TATGATATGTGTCTCCATGG+AGG | + | tig0027530:27307-27326 | Msa1434380:intron | 40.0% | |
| ATGATATGTGTCTCCATGGA+GGG | + | tig0027530:27308-27327 | Msa1434380:intron | 40.0% | |
| ACAAACAAACAAAACCCCAG+GGG | - | tig0027530:27540-27559 | None:intergenic | 40.0% | |
| ! | TACCTAGCCTGTACACTTTT+GGG | - | tig0027530:27584-27603 | None:intergenic | 40.0% |
| TTATCACCAAAAGGTCCCTT+TGG | - | tig0027530:28043-28062 | None:intergenic | 40.0% | |
| AATGTTAGAGACTGAGACGA+TGG | - | tig0027530:28113-28132 | None:intergenic | 40.0% | |
| ! | GTGCGTTTTTGATATTACGG+CGG | - | tig0027530:28305-28324 | None:intergenic | 40.0% |
| TTGTTGTCGTGAAGCATAGT+TGG | - | tig0027530:28333-28352 | None:intergenic | 40.0% | |
| !! | ACAAACATCGAGGGTATTGA+GGG | - | tig0027530:28365-28384 | None:intergenic | 40.0% |
| !! | AACAAACATCGAGGGTATTG+AGG | - | tig0027530:28366-28385 | None:intergenic | 40.0% |
| GTTTCAGTCTCAGAGATTTG+TGG | - | tig0027530:28695-28714 | None:intergenic | 40.0% | |
| GTCCTTCTCAAAACCTAAAC+AGG | + | tig0027530:28756-28775 | Msa1434380:intron | 40.0% | |
| !!! | CTCCTGTTTAGGTTTTGAGA+AGG | - | tig0027530:28761-28780 | None:intergenic | 40.0% |
| TACACATCAACACAGCCAAA+AGG | + | tig0027530:28935-28954 | Msa1434380:intron | 40.0% | |
| GGAATAAGATGTGGTCAAAG+TGG | + | tig0027530:28961-28980 | Msa1434380:intron | 40.0% | |
| ! | TGCCACTGAGTTGGAGTAAA+AGG | - | tig0027530:25191-25210 | None:intergenic | 45.0% |
| GAGTAGAAGATCAGGAGGAA+TGG | - | tig0027530:25264-25283 | None:intergenic | 45.0% | |
| AGAAAAATAGACCCAGAGCC+AGG | + | tig0027530:25461-25480 | Msa1434380:CDS | 45.0% | |
| GAAAAATAGACCCAGAGCCA+GGG | + | tig0027530:25462-25481 | Msa1434380:CDS | 45.0% | |
| ! | TGTGAAAGGCACATGCATAG+AGG | + | tig0027530:25551-25570 | Msa1434380:CDS | 45.0% |
| ! | GTGAAAGGCACATGCATAGA+GGG | + | tig0027530:25552-25571 | Msa1434380:CDS | 45.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | + | tig0027530:25577-25596 | Msa1434380:CDS | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | - | tig0027530:25583-25602 | None:intergenic | 45.0% | |
| GAGGAAAGGGTGGTTAAGAT+GGG | - | tig0027530:25768-25787 | None:intergenic | 45.0% | |
| AGAGGAAAGGGTGGTTAAGA+TGG | - | tig0027530:25769-25788 | None:intergenic | 45.0% | |
| GAGGGTTATGGTAGAGGAAA+GGG | - | tig0027530:25781-25800 | None:intergenic | 45.0% | |
| ! | TTATGGACTGAAAGAGGAGG+TGG | + | tig0027530:26278-26297 | Msa1434380:CDS | 45.0% |
| GCTTTCTTCACTGAACCTTC+TGG | + | tig0027530:26309-26328 | Msa1434380:CDS | 45.0% | |
| GAAGAGGAGCTTATGGTAAG+TGG | - | tig0027530:26387-26406 | None:intergenic | 45.0% | |
| !!! | CCATGAGTTTCTGCTGCTTT+TGG | - | tig0027530:26601-26620 | None:intergenic | 45.0% |
| CCAAAAGCAGCAGAAACTCA+TGG | + | tig0027530:26598-26617 | Msa1434380:intron | 45.0% | |
| !! | CCATTTACCTCGTTGGTTTG+TGG | - | tig0027530:26706-26725 | None:intergenic | 45.0% |
| CCACAAACCAACGAGGTAAA+TGG | + | tig0027530:26703-26722 | Msa1434380:intron | 45.0% | |
| TGCTTCAAAGCTATGAGCCA+CGG | - | tig0027530:26973-26992 | None:intergenic | 45.0% | |
| ! | GTTTTGCAGATGGTTGAGCT+TGG | + | tig0027530:27112-27131 | Msa1434380:intron | 45.0% |
| ! | GCTTGGGTTTCAATGATGGA+TGG | + | tig0027530:27129-27148 | Msa1434380:intron | 45.0% |
| CAGCACACACAACTACACAT+TGG | - | tig0027530:27336-27355 | None:intergenic | 45.0% | |
| GTTGTGTGTGCTGTGTTGTA+TGG | + | tig0027530:27343-27362 | Msa1434380:intron | 45.0% | |
| AACAGACACGGCCAAATAAC+TGG | - | tig0027530:27437-27456 | None:intergenic | 45.0% | |
| TTTGGCCGTGTCTGTTTATG+TGG | + | tig0027530:27441-27460 | Msa1434380:intron | 45.0% | |
| !! | CTGTACACTTTTGGGAGTTG+AGG | - | tig0027530:27576-27595 | None:intergenic | 45.0% |
| ! | CTCAACTCCCAAAAGTGTAC+AGG | + | tig0027530:27574-27593 | Msa1434380:intron | 45.0% |
| ! | GTACCTAGCCTGTACACTTT+TGG | - | tig0027530:27585-27604 | None:intergenic | 45.0% |
| !! | GCACATGGTGCCGATAAAAT+AGG | - | tig0027530:28009-28028 | None:intergenic | 45.0% |
| ATCAACACAGCCAAAAGGAG+AGG | + | tig0027530:28940-28959 | Msa1434380:intron | 45.0% | |
| AATTGGACAGTCCAAAGACG+TGG | - | tig0027530:29227-29246 | None:intergenic | 45.0% | |
| AGCATGCACTGTTGCACAAT+TGG | - | tig0027530:29244-29263 | None:intergenic | 45.0% | |
| !!! | ATAAACATTTTAATAAAAAA+AGG | - | tig0027530:26208-26227 | None:intergenic | 5.0% |
| !!! | AATTATTTTATACATTTTAT+TGG | + | tig0027530:27981-28000 | Msa1434380:intron | 5.0% |
| TCAAGCTCTTGCCACTGAGT+TGG | - | tig0027530:25200-25219 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGGTGCATGCAGT+TGG | + | tig0027530:25410-25429 | Msa1434380:intron | 50.0% |
| GGTTATGGTAGAGGAAAGGG+TGG | - | tig0027530:25778-25797 | None:intergenic | 50.0% | |
| GGAGGGTTATGGTAGAGGAA+AGG | - | tig0027530:25782-25801 | None:intergenic | 50.0% | |
| AGGATGGAGGGTTATGGTAG+AGG | - | tig0027530:25787-25806 | None:intergenic | 50.0% | |
| ACCATAACCCTCCATCCTCA+AGG | + | tig0027530:25789-25808 | Msa1434380:CDS | 50.0% | |
| AGTTAGGCCTTGAGGATGGA+GGG | - | tig0027530:25799-25818 | None:intergenic | 50.0% | |
| AAGTTAGGCCTTGAGGATGG+AGG | - | tig0027530:25800-25819 | None:intergenic | 50.0% | |
| GAGAAGTTAGGCCTTGAGGA+TGG | - | tig0027530:25803-25822 | None:intergenic | 50.0% | |
| !!! | GAGTTTCTGCTGCTTTTGGG+TGG | - | tig0027530:26597-26616 | None:intergenic | 50.0% |
| GGAGATTGAAAGCTGAGTGG+TGG | - | tig0027530:26646-26665 | None:intergenic | 50.0% | |
| CTACACATTGGATCCCTCCA+TGG | - | tig0027530:27324-27343 | None:intergenic | 50.0% | |
| CTAGCATTATGATGGCCCCT+GGG | + | tig0027530:27522-27541 | Msa1434380:intron | 50.0% | |
| TAGCATTATGATGGCCCCTG+GGG | + | tig0027530:27523-27542 | Msa1434380:intron | 50.0% | |
| ! | CTCCCAAAAGTGTACAGGCT+AGG | + | tig0027530:27579-27598 | Msa1434380:intron | 50.0% |
| TCGTGCACAACACATGCGTA+AGG | + | tig0027530:28458-28477 | Msa1434380:intron | 50.0% | |
| CATTACATGGCCTGAGTCAG+AGG | - | tig0027530:29175-29194 | None:intergenic | 50.0% | |
| GCAAGCTAGAACCACGTCTT+TGG | + | tig0027530:29213-29232 | Msa1434380:intron | 50.0% | |
| ! | ATTATGAACGTGGTGGTGCG+TGG | + | tig0027530:29294-29313 | Msa1434380:intron | 50.0% |
| ! | TTATGAACGTGGTGGTGCGT+GGG | + | tig0027530:29295-29314 | Msa1434380:intron | 50.0% |
| GTGTGGTGCATGCAGTTGGA+TGG | + | tig0027530:25414-25433 | Msa1434380:intron | 55.0% | |
| AAATAGACCCAGAGCCAGGG+AGG | + | tig0027530:25465-25484 | Msa1434380:CDS | 55.0% | |
| TCTGTTCTTCTGCACCTCCC+TGG | - | tig0027530:25482-25501 | None:intergenic | 55.0% | |
| ! | GGGAGGTGCAGAAGAACAGA+TGG | + | tig0027530:25482-25501 | Msa1434380:CDS | 55.0% |
| GCCTTGAGGATGGAGGGTTA+TGG | - | tig0027530:25793-25812 | None:intergenic | 55.0% | |
| CGACACTGACACATCGCCAT+AGG | + | tig0027530:26773-26792 | Msa1434380:intron | 55.0% | |
| GCTCTAGTCAGTGTTGTGCC+TGG | + | tig0027530:26944-26963 | Msa1434380:intron | 55.0% | |
| GCTAGCATTATGATGGCCCC+TGG | + | tig0027530:27521-27540 | Msa1434380:intron | 55.0% | |
| TGGGTGAAGATGCGGTGTGT+TGG | + | tig0027530:27730-27749 | Msa1434380:intron | 55.0% | |
| TTGGCAGGTGAAGTCGCACA+TGG | - | tig0027530:28024-28043 | None:intergenic | 55.0% | |
| TGTGCGACTTCACCTGCCAA+AGG | + | tig0027530:28024-28043 | Msa1434380:intron | 55.0% | |
| GTGCGACTTCACCTGCCAAA+GGG | + | tig0027530:28025-28044 | Msa1434380:intron | 55.0% | |
| ! | CACCTGCCAAAGGGACCTTT+TGG | + | tig0027530:28034-28053 | Msa1434380:intron | 55.0% |
| CACCAAAAGGTCCCTTTGGC+AGG | - | tig0027530:28039-28058 | None:intergenic | 55.0% | |
| CGTGGGACAGACACAGTTGT+TGG | + | tig0027530:29312-29331 | Msa1434380:intron | 55.0% | |
| ! | TTCTGCACCTCCCTGGCTCT+GGG | - | tig0027530:25475-25494 | None:intergenic | 60.0% |
| AGTGTTGTGCCTGGTGTCCG+TGG | + | tig0027530:26953-26972 | Msa1434380:intron | 60.0% | |
| AGCTATGAGCCACGGACACC+AGG | - | tig0027530:26965-26984 | None:intergenic | 60.0% | |
| CTTCTGCACCTCCCTGGCTC+TGG | - | tig0027530:25476-25495 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027530 | gene | 25110 | 29399 | 25110 | ID=Msa1434380;Name=Msa1434380 |
| tig0027530 | mRNA | 25110 | 29399 | 25110 | ID=Msa1434380-mRNA-1;Parent=Msa1434380;Name=Msa1434380-mRNA-1;_AED=0.23;_eAED=0.23;_QI=54|0.33|0.25|0.75|1|1|4|0|286 |
| tig0027530 | exon | 25110 | 25341 | 25110 | ID=Msa1434380-mRNA-1:exon:9187;Parent=Msa1434380-mRNA-1 |
| tig0027530 | exon | 25429 | 25846 | 25429 | ID=Msa1434380-mRNA-1:exon:9188;Parent=Msa1434380-mRNA-1 |
| tig0027530 | exon | 26266 | 26519 | 26266 | ID=Msa1434380-mRNA-1:exon:9189;Parent=Msa1434380-mRNA-1 |
| tig0027530 | exon | 29389 | 29399 | 29389 | ID=Msa1434380-mRNA-1:exon:9190;Parent=Msa1434380-mRNA-1 |
| tig0027530 | five_prime_UTR | 25110 | 25163 | 25110 | ID=Msa1434380-mRNA-1:five_prime_utr;Parent=Msa1434380-mRNA-1 |
| tig0027530 | CDS | 25164 | 25341 | 25164 | ID=Msa1434380-mRNA-1:cds;Parent=Msa1434380-mRNA-1 |
| tig0027530 | CDS | 25429 | 25846 | 25429 | ID=Msa1434380-mRNA-1:cds;Parent=Msa1434380-mRNA-1 |
| tig0027530 | CDS | 26266 | 26519 | 26266 | ID=Msa1434380-mRNA-1:cds;Parent=Msa1434380-mRNA-1 |
| tig0027530 | CDS | 29389 | 29399 | 29389 | ID=Msa1434380-mRNA-1:cds;Parent=Msa1434380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
