AlfalfaGEDB | MS.gene34845

M. sativa cultivar XinJiangDaYe / MS.gene34845

KEGG: K03086
GO: GO:0003674 GO:0003700 GO:0006139 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04539.19 PF04542.17 PF04545.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34845.t1	XP_013442452.1	95.9	508	17	3	1	508	1	504	2.70E-263	917.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34845.t1	O24629	67.7	514	148	6	1	508	1	502	1.1e-180	634.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34845.t1	A0A072TGI9	95.9	508	17	3	1	508	1	504	1.9e-263	917.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene34845	0.841199	5.49E-58	-1.69E-46
MS.gene049153	MS.gene34845	0.842233	2.93E-58	-1.69E-46
MS.gene049170	MS.gene34845	0.807933	3.97E-50	-1.69E-46
MS.gene049346	MS.gene34845	0.818377	2.02E-52	-1.69E-46
MS.gene049356	MS.gene34845	0.851533	8.34E-61	-1.69E-46
MS.gene049369	MS.gene34845	0.803395	3.56E-49	-1.69E-46
MS.gene049661	MS.gene34845	0.827836	1.26E-54	-1.69E-46
MS.gene049662	MS.gene34845	0.830079	3.59E-55	-1.69E-46
MS.gene049758	MS.gene34845	0.839082	1.96E-57	-1.69E-46
MS.gene049910	MS.gene34845	0.8209	5.37E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34845.t1	MTR_0172s0030	95.866	508	17	3	1	508	1	504	0.0	986
MS.gene34845.t1	MTR_3g033420	34.568	324	187	7	180	494	84	391	1.81e-41	153
MS.gene34845.t1	MTR_3g118290	30.897	301	198	6	209	506	278	571	8.36e-40	152
MS.gene34845.t1	MTR_7g101840	31.046	306	199	5	202	503	254	551	3.59e-35	139
MS.gene34845.t1	MTR_1g063850	31.373	306	196	6	193	493	249	545	1.38e-34	137
MS.gene34845.t1	MTR_1g007370	28.671	286	189	5	212	494	263	536	6.87e-24	105
MS.gene34845.t1	MTR_3g090900	29.153	295	193	7	208	497	222	505	7.35e-22	99.0
MS.gene34845.t1	MTR_3g090900	30.570	193	126	4	208	396	222	410	3.59e-17	84.3
MS.gene34845.t1	MTR_1g007370	32.576	132	89	0	212	343	263	394	4.64e-16	80.5
MS.gene34845.t1	MTR_3g090900	32.692	156	96	4	208	358	222	373	4.78e-15	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34845.t1	AT1G64860	67.704	514	148	6	1	508	1	502	0.0	680
MS.gene34845.t1	AT1G64860	66.042	480	145	6	1	474	1	468	0.0	619
MS.gene34845.t1	AT1G08540	33.548	310	192	6	202	506	269	569	1.30e-43	162
MS.gene34845.t1	AT5G13730	35.738	305	175	7	197	494	114	404	3.39e-39	147
MS.gene34845.t1	AT2G36990	31.373	306	198	5	193	494	235	532	1.37e-36	142
MS.gene34845.t1	AT5G24120	31.229	301	179	10	208	497	225	508	1.17e-24	107
MS.gene34845.t1	AT5G24120	31.229	301	179	10	208	497	225	508	1.17e-24	107
MS.gene34845.t1	AT5G24120	31.229	301	179	10	208	497	225	508	1.17e-24	107
MS.gene34845.t1	AT3G53920	30.508	236	147	7	265	493	332	557	4.34e-22	100
MS.gene34845.t1	AT3G53920	29.771	131	92	0	213	343	280	410	1.81e-13	72.8

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Find 96 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGCCGCAAGGAAGA+GGG	0.578890	4.4:-60859890	MS.gene34845:CDS
AAAGAAGAATGACAATCAAG+AGG	0.607282	4.4:-60863642	MS.gene34845:CDS
AAAGCCTTAATATGTCTCAA+AGG	0.587061	4.4:-60861557	MS.gene34845:CDS
AACAAAATGAGAACATCCCA+TGG	0.568183	4.4:-60861186	MS.gene34845:CDS
AACCTCTCATGCAAATGAGC+GGG	0.548183	4.4:+60861740	None:intergenic
AAGCGTCTACTCCATTCCAT+GGG	0.627442	4.4:+60861170	None:intergenic
AAGGTATCTGTGACTTGTTC+TGG	0.322986	4.4:-60863679	MS.gene34845:CDS
AAGTGTTGAGTGAGAATTCG+AGG	0.479531	4.4:-60863720	MS.gene34845:CDS
AATGAGAACATCCCATGGAA+TGG	0.568965	4.4:-60861181	MS.gene34845:CDS
AATGGAGTCTTTCATTTGAA+AGG	0.424190	4.4:-60863744	MS.gene34845:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAATGACAATCAAG+AGG	-	chr4.4:60860339-60860358	MS.gene34845:intron	30.0%
AAAGAAGTAACAAACTGTCA+CGG	+	chr4.4:60863504-60863523	None:intergenic	30.0%
AAAGCCTTAATATGTCTCAA+AGG	-	chr4.4:60862424-60862443	MS.gene34845:intron	30.0%
AAATGCTGAATGAGCAAAAA+AGG	-	chr4.4:60863220-60863239	MS.gene34845:intron	30.0%
AATGGAGTCTTTCATTTGAA+AGG	-	chr4.4:60860237-60860256	MS.gene34845:intron	30.0%
ACGATGATACATCATCTTAT+TGG	-	chr4.4:60863553-60863572	MS.gene34845:CDS	30.0%
ACTTATTCAAAACCGTTTGA+AGG	-	chr4.4:60860421-60860440	MS.gene34845:intron	30.0%
ATAAGACTAAATTGTCACCT+AGG	-	chr4.4:60863790-60863809	MS.gene34845:CDS	30.0%
ATCAAATATTTGCCTCACAT+TGG	-	chr4.4:60861015-60861034	MS.gene34845:intron	30.0%
ATTAATCCTACAACTGAATG+AGG	-	chr4.4:60860757-60860776	MS.gene34845:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	60859861	60864142	60859861	ID=MS.gene34845
chr4.4	mRNA	60859861	60864142	60859861	ID=MS.gene34845.t1;Parent=MS.gene34845
chr4.4	exon	60863454	60864142	60863454	ID=MS.gene34845.t1.exon1;Parent=MS.gene34845.t1
chr4.4	CDS	60863454	60864142	60863454	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60862464	60862662	60862464	ID=MS.gene34845.t1.exon2;Parent=MS.gene34845.t1
chr4.4	CDS	60862464	60862662	60862464	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60862273	60862365	60862273	ID=MS.gene34845.t1.exon3;Parent=MS.gene34845.t1
chr4.4	CDS	60862273	60862365	60862273	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60861679	60861807	60861679	ID=MS.gene34845.t1.exon4;Parent=MS.gene34845.t1
chr4.4	CDS	60861679	60861807	60861679	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60861536	60861589	60861536	ID=MS.gene34845.t1.exon5;Parent=MS.gene34845.t1
chr4.4	CDS	60861536	60861589	60861536	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60861359	60861436	60861359	ID=MS.gene34845.t1.exon6;Parent=MS.gene34845.t1
chr4.4	CDS	60861359	60861436	60861359	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60861159	60861221	60861159	ID=MS.gene34845.t1.exon7;Parent=MS.gene34845.t1
chr4.4	CDS	60861159	60861221	60861159	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60860513	60860625	60860513	ID=MS.gene34845.t1.exon8;Parent=MS.gene34845.t1
chr4.4	CDS	60860513	60860625	60860513	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1
chr4.4	exon	60859861	60859969	60859861	ID=MS.gene34845.t1.exon9;Parent=MS.gene34845.t1
chr4.4	CDS	60859861	60859969	60859861	ID=cds.MS.gene34845.t1;Parent=MS.gene34845.t1

Gene Sequence

>MS.gene34845

ATGGCTACTGCAGCAGTTATTGGATTGAGTGGAGGAAAGAGACTATTGAGTTCATCTTACCATTATTCAGATATTATAGAAAAGTTTTCTCATGCATCATGTGATTTTGGTTCCACACAGTATCAACTTCCTCCTTCAAAATCTGTAATAGTTGCAAAGAAATCATCAAAATACACTCCAACTTTTCCACCATCTGAAAGGCAGCAGAATCAGTCTATCAAGGCACTTAAGGAACACGTTGTCGATAGCGCCGTGCATGCTGATTCGGAACAATGGTTTCAGGGATACAATTCTAATGACTTTGAGGTTGAAAGTTCTGACATGGATTATTCATTGGACGCGCTTCTTTTGCTGCAGAAGTCGATGTTGGAAAAGCAATGGAGTCTTTCATTTGAAAGGAAAGTGTTGAGTGAGAATTCGAGGAGAGAAAAGATACGGAGGAAGGTATCTGTGACTTGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATGACAATCAAGAGGAAGATCGCTGCTAAAAGTGGTTCTGCAGTGATGCAGCTGAGGTCTACAATCAATCCCGAACTTATTCAAAACCGTTTGAAGGGATATGTGAAAGGTGTCGTGAGTGACGAATTGCTCTCTCATGCTGAAGTTGTAAAGTTATCTGAGAAAATTAAAGCTGGCCTTTCTTTAGATGAGCATAAATCCAGGTAAATGCCTGCATTGTTGGTGTTCATAATTGTGATTCATAAAAATGATGAATATGCTTCTTCTTTTTTTGTAGTTTTACTGTTAGTTCCATAATTGTGTAATTGTAGAAGTTAGTGAGTGATTTTCTTAAGCTAAGCAATCTTTGGATTATTTGAAAAGAAATTTTGTTACTAAAGCATTACACGTTTGAATGATCAATCATGGCTATTAATCCTACAACTGAATGAGGAATTAGATTAATCATTATTATTATCGTAAGTAAACAAGGGTTCTATCATTCTCGGCAAGAACAACTTTTCTTTGCAATTTCTTCGCTGATTTTACGACTCTACTGCTCCTCGAAAGTCAATGTTGAAGACATAGTTTTCTTTTTTAGTTTATGGATAATATAGTGAACTGAACATTTTTGCAGGTGGAGCATGAGCAACTAATTTAAATTTATTTCACTGTGTTTAAATAATGAAATCAAATATTTGCCTCACATTGGTTTTAGCCTTCATTCCAACAATATATTGCTGGTGGTAGACAATGAAATAATTGCATTAGGATGTACTATAGGGAAAAAGTTATAGAAATGATTAAGCATTTATTACACTTCATATAAAGTTCAACAAAATAGTTGTCTTTTATATTGAAAAAGCACATTCTCCATGTTACTTTATGTATCTTATATCGTTTGAGGGAATTCCGCCAGATAATTTTGTAAATTGACTTCTTTTCTTGTGGTTTTACATTGAAGAGAACAGTAGCTGAATCACACTATTTGTAAATCTTATTACTTGAATTTCAGACTGAAGGAAAGATTAGGAAGTGAACCTTCCGATGATCAAGTTGCAACTTCGTTGAAGATTTCTCGAGCAGAACTACGAGCTAAAATAATAGAGTGCTCTTTAGCAAGAGAAAAGTTAACTATGAGCAATGTTCGCTTAGTTTTGTCCATTGCTCAAAGATATGATAATATGGGTGCTGAAATGGGTGACCTTGTTCAGGTGATTATAAAGATATCCTTGTTTTAACTTCGTATCTTCTTAGCTTTGTTTCTTCCTCTGTTGACAAACACTCCGCACTCGCCTTGCTTTTTCTATAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAGTTTGATTCGTCAAAAGGATTCAAGATTTCAACTTATGTTTATTGGTGGATACGACAGGTAAGGTTTACAGTTCTATAAGAATTTTCCAAACCTAGTTTTTGTATGGCTTGTTATCAGATATTCTTCTATTAGTGTTCTTTTAAACATTAATCGTCGTAAATTCACCGATGGATGCAAGGACAGTAGATGGGAAAATACTTTCTGGAAATCTCCTAAAACAGTTTCTTTAAAATACTTTTGTTTCAATTGTTTACCATATAGCTTCTATTTTATAATCATCATTGCAGTCCATTTTGAGCCATAATTTCTGCAATAAATCAGTAACTCACTTTTTACTCATATAAATCATTTTTCTGTAGTAATAATTTTAGATGGAGAGAATGAACTTTGTGCACCATTTTTTCTTGTTTTTGTTTTCATTAGTTTCGGAATACTACATAATTGTGTTTTGAGAAATCTGTGCAAGGGTATTTTGCAATTCAAATTTGTCGAACCACCGTCACTAAATAATTGTGCTGACAGGGTGTTTCAAGAGCTCTAGTTGAGAATTCAAGAACATTAAGATTGCCCGCTCATTTGCATGAGAGGTTATCTCTGATCCGCAATGCAGAGTATAGACTCGAAGAGAGAGGCATCACTCCAACTATTGATGTAAGTCAGCTAAATGTATAAACAATAAAGCAACTTTAATCTGTATCACTGTTTCAAAAAAATGATTCATCTGTTCCCTTATTTTGTAGAGAATTGCAAAAAGCCTTAATATGTCTCAAAGGAAAGTCAGAAATGCTACTGAGGTAACAAAATCAATGAGAGTTACACGATCCACATACACTTAATGTAATATCTTATTGACTATTCTTCATTTATTTAACGTGTGTATATTCATATTGCAGGCTATAAGCAAAGTTTTCTCCTTAGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCAGGAGACACTCATCACAGCGTAAGTTTTACTTAATACTTTTTTCTACAAATCCATCATGGAAGATCATTGGATTTACATCTTTCTTCTTTGCCTTTTCCTTTGTATTTTTCCCAAAAATATCAATTGTCTCATTCTCTTCATCTTTTTGCTCACAGTTTATTGCAGATAAACAAAATGAGAACATCCCATGGAATGGAGTAGACGCTTGGGCTCTAAAGGTAATAAGCAAAACATCGGAATTAAACCTGTCTTGATTGCAAAGCATAAACATTTCATTGCTGAAAAGCAGAAGATTGTTTGAATGCCTTCTATCCTGCAATGCTCTTTATATCAAACCTTCTTTAATTATGTGCGTAAATTTTATGGTAGAGTATGTTATGACATCAGGATGATAATAAGCATCAAAATTGATGTATTCGAAATGGGTGATTTTGAAGCCACTAATTACTTTTTGTTGTATAAAAACAATCAGGCCTAATACATAGCTGAACTTTATCACAATGACACATGCATATAATCAATATCACTTGGTGAGAGAAGACTTGGTTATTGTTGTTGATTTCTAAAGCCATGAGAGTGCCTATTAAATTGAAAAATGCTGAATGAGCAAAAAAGGCAGCATAATAATATATTGTACACCTACACCAAAATAATAATGTTGATATAACAGCTTAACTGTTTTACGAGTGAATTGCAGCATTTTATGTTCTAAACTTCCATAAATATTAATACCATTTGTAAATATTTACAGGAAGAAGTGAACAGACTCATTAATGTGACCCTTGTGGAACGCGAGAGAGAAATTGTTCGTCTTTATTATGGATTGGATAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGTGAGTTCAACCGTGACAGTTTGTTACTTCTTTTATCCAATGTCCTTGCCAAGTAAAATTATACGATGATACATCATCTTATTGGGTGAATTGCTAATTTTCTCCATGAAATTGTTACTAGTGTTAGACAATTTTTTAATTTAGTCATAAAATTAACAAAATTTCAAAATGATTTATGAAATTGGAAATTTTCTTTTACTTAGGTGCCAATTTAGTCCTTGATATTATCTTACAGAAACTAATGTGATAGAGATTTTTTTATTTTATTTTAGAGATCATTTTAGAATTTCGTTAATTTCATAAGACTAAATTGTCACCTAGGACCTTATCAAATACTAAATTGGCGATTCACTTTCAGAGGACCTTATCTGATTCATCCATAGCATAAATTTTTACGTAACTCACGTGTTCAGAACGTACATTTGATGGAGTAGTCTAGTTTTCTTCACAAATTGATATTACACTTATTAATCTTGAAAGTGTCACACTAACTGCACTAGTTTTCATTCAAATTCTGTGTTGACTCTCGTGTTATTCCTACAGGATAGGTTTGTCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCGTTGGAGAAACTAAAACATGCCGCAAGGAAGAGGGAGATGGAAGCCATGCTTTTGAAACATTGA

Protein sequence

>MS.gene34845.t1

MATAAVIGLSGGKRLLSSSYHYSDIIEKFSHASCDFGSTQYQLPPSKSVIVAKKSSKYTPTFPPSERQQNQSIKALKEHVVDSAVHADSEQWFQGYNSNDFEVESSDMDYSLDALLLLQKSMLEKQWSLSFERKVLSENSRREKIRRKVSVTCSGVSARQRRMTIKRKIAAKSGSAVMQLRSTINPELIQNRLKGYVKGVVSDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRAELRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAEYRLEERGITPTIDRIAKSLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNGVDAWALKEEVNRLINVTLVEREREIVRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH