Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35898.t1 | XP_003615834.1 | 95.8 | 402 | 15 | 1 | 1 | 402 | 1 | 400 | 8.40E-204 | 719.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35898.t1 | Q8L774 | 63.6 | 401 | 133 | 2 | 1 | 401 | 1 | 388 | 4.7e-147 | 522.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35898.t1 | G7KEE1 | 95.8 | 402 | 15 | 1 | 1 | 402 | 1 | 400 | 6.1e-204 | 719.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene35898 | 0.882399 | 1.08E-70 | -1.69E-46 |
| MS.gene049171 | MS.gene35898 | 0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene35898 | 0.829193 | 5.90E-55 | -1.69E-46 |
| MS.gene049257 | MS.gene35898 | 0.829284 | 5.61E-55 | -1.69E-46 |
| MS.gene049427 | MS.gene35898 | 0.836129 | 1.12E-56 | -1.69E-46 |
| MS.gene049488 | MS.gene35898 | 0.838782 | 2.34E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene35898 | 0.842034 | 3.31E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene35898 | 0.816758 | 4.69E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene35898 | 0.840794 | 7.01E-58 | -1.69E-46 |
| MS.gene050315 | MS.gene35898 | 0.8103 | 1.23E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene35898 | -0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene050538 | MS.gene35898 | 0.844023 | 9.77E-59 | -1.69E-46 |
| MS.gene050577 | MS.gene35898 | 0.803084 | 4.13E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene35898 | 0.832481 | 9.22E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene35898 | 0.85789 | 1.20E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene35898 | 0.864491 | 1.17E-64 | -1.69E-46 |
| MS.gene050772 | MS.gene35898 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene35898 | 0.817451 | 3.28E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene35898 | 0.828399 | 9.19E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene35898 | 0.858442 | 8.22E-63 | -1.69E-46 |
| MS.gene050950 | MS.gene35898 | 0.858312 | 8.98E-63 | -1.69E-46 |
| MS.gene05105 | MS.gene35898 | 0.837022 | 6.64E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene35898 | 0.841213 | 5.45E-58 | -1.69E-46 |
| MS.gene051525 | MS.gene35898 | 0.833866 | 4.17E-56 | -1.69E-46 |
| MS.gene051552 | MS.gene35898 | -0.804413 | 2.19E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene35898 | 0.808662 | 2.77E-50 | -1.69E-46 |
| MS.gene051588 | MS.gene35898 | 0.809347 | 1.98E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene35898 | 0.83847 | 2.82E-57 | -1.69E-46 |
| MS.gene051734 | MS.gene35898 | 0.801483 | 8.81E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene35898 | 0.878604 | 2.46E-69 | -1.69E-46 |
| MS.gene052134 | MS.gene35898 | 0.827347 | 1.64E-54 | -1.69E-46 |
| MS.gene052135 | MS.gene35898 | 0.825827 | 3.79E-54 | -1.69E-46 |
| MS.gene052136 | MS.gene35898 | 0.82044 | 6.85E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene35898 | 0.814434 | 1.54E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene35898 | 0.817749 | 2.81E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene35898 | 0.810053 | 1.40E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene35898 | 0.813052 | 3.11E-51 | -1.69E-46 |
| MS.gene052346 | MS.gene35898 | 0.810933 | 9.01E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene35898 | 0.87993 | 8.33E-70 | -1.69E-46 |
| MS.gene052421 | MS.gene35898 | 0.822704 | 2.05E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene35898 | 0.800733 | 1.26E-48 | -1.69E-46 |
| MS.gene052481 | MS.gene35898 | 0.867015 | 1.87E-65 | -1.69E-46 |
| MS.gene052484 | MS.gene35898 | 0.842811 | 2.06E-58 | -1.69E-46 |
| MS.gene052485 | MS.gene35898 | 0.826569 | 2.52E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene35898 | 0.870289 | 1.63E-66 | -1.69E-46 |
| MS.gene052503 | MS.gene35898 | 0.840649 | 7.66E-58 | -1.69E-46 |
| MS.gene052505 | MS.gene35898 | 0.870742 | 1.16E-66 | -1.69E-46 |
| MS.gene052615 | MS.gene35898 | 0.83256 | 8.82E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene35898 | 0.831864 | 1.31E-55 | -1.69E-46 |
| MS.gene052825 | MS.gene35898 | 0.834899 | 2.29E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene35898 | 0.865899 | 4.22E-65 | -1.69E-46 |
| MS.gene053203 | MS.gene35898 | 0.804022 | 2.64E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene35898 | 0.817343 | 3.46E-52 | -1.69E-46 |
| MS.gene053330 | MS.gene35898 | 0.805176 | 1.51E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene35898 | 0.805967 | 1.03E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene35898 | 0.810173 | 1.31E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene35898 | 0.822097 | 2.84E-53 | -1.69E-46 |
| MS.gene053579 | MS.gene35898 | 0.834157 | 3.53E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene35898 | 0.809708 | 1.66E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene35898 | 0.80098 | 1.12E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene35898 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene35898 | 0.821011 | 5.07E-53 | -1.69E-46 |
| MS.gene054102 | MS.gene35898 | 0.824995 | 5.97E-54 | -1.69E-46 |
| MS.gene054107 | MS.gene35898 | 0.824099 | 9.70E-54 | -1.69E-46 |
| MS.gene054408 | MS.gene35898 | 0.825395 | 4.80E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene35898 | 0.81117 | 8.01E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene35898 | 0.801215 | 1.00E-48 | -1.69E-46 |
| MS.gene054719 | MS.gene35898 | 0.819456 | 1.15E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene35898 | -0.801622 | 8.26E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene35898 | -0.840214 | 9.95E-58 | -1.69E-46 |
| MS.gene054927 | MS.gene35898 | 0.839587 | 1.45E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene35898 | 0.807086 | 6.00E-50 | -1.69E-46 |
| MS.gene055159 | MS.gene35898 | -0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene35898 | 0.826407 | 2.76E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene35898 | 0.82533 | 4.97E-54 | -1.69E-46 |
| MS.gene055369 | MS.gene35898 | 0.808139 | 3.59E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene35898 | 0.813339 | 2.69E-51 | -1.69E-46 |
| MS.gene055412 | MS.gene35898 | 0.816644 | 4.97E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene35898 | 0.809786 | 1.59E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene35898 | 0.877233 | 7.41E-69 | -1.69E-46 |
| MS.gene05553 | MS.gene35898 | 0.826942 | 2.06E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene35898 | 0.817217 | 3.70E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene35898 | 0.846511 | 2.07E-59 | -1.69E-46 |
| MS.gene055744 | MS.gene35898 | 0.848503 | 5.88E-60 | -1.69E-46 |
| MS.gene05589 | MS.gene35898 | 0.809271 | 2.05E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene35898 | 0.804088 | 2.55E-49 | -1.69E-46 |
| MS.gene056040 | MS.gene35898 | 0.821812 | 3.31E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene35898 | 0.868379 | 6.82E-66 | -1.69E-46 |
| MS.gene056511 | MS.gene35898 | 0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene35898 | 0.829002 | 6.57E-55 | -1.69E-46 |
| MS.gene05664 | MS.gene35898 | 0.830089 | 3.57E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene35898 | 0.810201 | 1.30E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene35898 | 0.811274 | 7.60E-51 | -1.69E-46 |
| MS.gene056782 | MS.gene35898 | 0.80375 | 3.00E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene35898 | 0.838366 | 3.00E-57 | -1.69E-46 |
| MS.gene057048 | MS.gene35898 | 0.81839 | 2.01E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene35898 | 0.828635 | 8.06E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene35898 | 0.861055 | 1.34E-63 | -1.69E-46 |
| MS.gene057332 | MS.gene35898 | 0.832443 | 9.43E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene35898 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene35898 | 0.852792 | 3.66E-61 | -1.69E-46 |
| MS.gene057734 | MS.gene35898 | 0.818162 | 2.26E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene35898 | 0.829595 | 4.72E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene35898 | 0.834953 | 2.22E-56 | -1.69E-46 |
| MS.gene057825 | MS.gene35898 | 0.818452 | 1.95E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene35898 | 0.822559 | 2.22E-53 | -1.69E-46 |
| MS.gene057856 | MS.gene35898 | 0.813675 | 2.27E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene35898 | 0.837359 | 5.45E-57 | -1.69E-46 |
| MS.gene058019 | MS.gene35898 | 0.819368 | 1.21E-52 | -1.69E-46 |
| MS.gene058090 | MS.gene35898 | 0.807813 | 4.21E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene35898 | 0.828053 | 1.11E-54 | -1.69E-46 |
| MS.gene058130 | MS.gene35898 | 0.812551 | 4.00E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene35898 | 0.858844 | 6.23E-63 | -1.69E-46 |
| MS.gene05837 | MS.gene35898 | 0.824338 | 8.52E-54 | -1.69E-46 |
| MS.gene058418 | MS.gene35898 | -0.801294 | 9.64E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene35898 | 0.857216 | 1.90E-62 | -1.69E-46 |
| MS.gene058544 | MS.gene35898 | 0.830311 | 3.15E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene35898 | 0.855274 | 7.04E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene35898 | 0.860031 | 2.74E-63 | -1.69E-46 |
| MS.gene05883 | MS.gene35898 | 0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene35898 | 0.807419 | 5.10E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene35898 | 0.822633 | 2.13E-53 | -1.69E-46 |
| MS.gene059011 | MS.gene35898 | 0.80193 | 7.14E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene35898 | 0.846511 | 2.07E-59 | -1.69E-46 |
| MS.gene059141 | MS.gene35898 | 0.845978 | 2.90E-59 | -1.69E-46 |
| MS.gene05914 | MS.gene35898 | 0.830604 | 2.67E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene35898 | 0.828933 | 6.82E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene35898 | 0.827651 | 1.39E-54 | -1.69E-46 |
| MS.gene059455 | MS.gene35898 | 0.835257 | 1.86E-56 | -1.69E-46 |
| MS.gene059526 | MS.gene35898 | -0.800246 | 1.58E-48 | -1.69E-46 |
| MS.gene059667 | MS.gene35898 | 0.816038 | 6.80E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene35898 | 0.809382 | 1.95E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene35898 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene059801 | MS.gene35898 | 0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene060087 | MS.gene35898 | -0.804522 | 2.07E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene35898 | 0.840443 | 8.67E-58 | -1.69E-46 |
| MS.gene060485 | MS.gene35898 | 0.812734 | 3.65E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene35898 | 0.812616 | 3.88E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene35898 | 0.827356 | 1.64E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene35898 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene06092 | MS.gene35898 | 0.848219 | 7.05E-60 | -1.69E-46 |
| MS.gene061154 | MS.gene35898 | 0.815583 | 8.58E-52 | -1.69E-46 |
| MS.gene061231 | MS.gene35898 | 0.806228 | 9.11E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35898.t1 | MTR_5g072900 | 96.020 | 402 | 14 | 1 | 1 | 402 | 1 | 400 | 0.0 | 797 |
| MS.gene35898.t1 | MTR_8g064720 | 34.501 | 371 | 209 | 9 | 21 | 378 | 18 | 367 | 2.62e-57 | 193 |
| MS.gene35898.t1 | MTR_7g006040 | 38.596 | 342 | 174 | 11 | 63 | 396 | 49 | 362 | 4.76e-57 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35898.t1 | AT1G07010 | 66.584 | 401 | 121 | 3 | 1 | 401 | 1 | 388 | 0.0 | 542 |
| MS.gene35898.t1 | AT1G07010 | 66.085 | 401 | 119 | 4 | 1 | 401 | 1 | 384 | 0.0 | 530 |
| MS.gene35898.t1 | AT1G07010 | 64.320 | 412 | 123 | 6 | 1 | 401 | 1 | 399 | 0.0 | 520 |
| MS.gene35898.t1 | AT1G18480 | 36.716 | 335 | 174 | 8 | 72 | 395 | 56 | 363 | 6.97e-60 | 199 |
Find 109 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAACCTATTGTTGTTAT+TGG | 0.130673 | 5.1:+56036560 | MS.gene35898:CDS |
| TTCTGCTTTGTCTAGGTAAA+TGG | 0.194308 | 5.1:+56038665 | MS.gene35898:intron |
| TTACCTCAGGTCTTGAATTA+AGG | 0.225021 | 5.1:-56040595 | None:intergenic |
| CTCAAACTGTTGGGGTAAAT+TGG | 0.237790 | 5.1:+56040304 | MS.gene35898:CDS |
| GAAAGGTGGAGCTGTGTTTC+AGG | 0.243774 | 5.1:+56038123 | MS.gene35898:CDS |
| GATTTCAGATATGTTGATTC+TGG | 0.255499 | 5.1:+56038716 | MS.gene35898:CDS |
| TGATGAATGTAGTGATTTCT+TGG | 0.278304 | 5.1:+56038745 | MS.gene35898:CDS |
| TTCACTGTATCTGTCCGTTT+TGG | 0.334866 | 5.1:-56040745 | None:intergenic |
| AAGAGACTCACCAGATTTGA+TGG | 0.344529 | 5.1:+56039782 | MS.gene35898:CDS |
| TAGTGGCAATGAAAGGAATT+TGG | 0.346079 | 5.1:-56039722 | None:intergenic |
| TTGCCCGATCAATCCTCTTT+CGG | 0.346959 | 5.1:+56039171 | MS.gene35898:CDS |
| GAAATCCCCTTCCACATTCA+TGG | 0.358343 | 5.1:-56038699 | None:intergenic |
| ACGATAAAGCTAGAGTTATA+AGG | 0.381232 | 5.1:+56040721 | MS.gene35898:CDS |
| CCTGTCCTTGCTGCGATCAT+TGG | 0.382520 | 5.1:+56038084 | MS.gene35898:CDS |
| CTTTCGGCCTGGTGGGCCAC+TGG | 0.385890 | 5.1:+56039187 | MS.gene35898:CDS |
| GATGGATTATGAGGCTAAAC+AGG | 0.389943 | 5.1:+56039800 | MS.gene35898:CDS |
| AACAAAGTCAAGAAGTCATT+GGG | 0.395929 | 5.1:+56038850 | MS.gene35898:CDS |
| CAATTTACCCCAACAGTTTG+AGG | 0.402208 | 5.1:-56040303 | None:intergenic |
| GACATACTCCTCAAACTGTT+GGG | 0.404387 | 5.1:+56040295 | MS.gene35898:CDS |
| GGGGTTATGACAGTGTTGTT+TGG | 0.412400 | 5.1:+56039745 | MS.gene35898:CDS |
| GGGTCACCAATAACAACAAT+AGG | 0.412558 | 5.1:-56036566 | None:intergenic |
| GCCTCATAATCCATCAAATC+TGG | 0.415124 | 5.1:-56039792 | None:intergenic |
| CTTCCACATTCATGGTCTCA+TGG | 0.416944 | 5.1:-56038691 | None:intergenic |
| ACCAGATTTGATGGATTATG+AGG | 0.427587 | 5.1:+56039791 | MS.gene35898:CDS |
| ATGACAGTGTTGTTTGGAAT+CGG | 0.427904 | 5.1:+56039751 | MS.gene35898:CDS |
| CACTGGCGTGTGAGCTTGCA+AGG | 0.436226 | 5.1:+56039204 | MS.gene35898:CDS |
| AGCTAGATATGCACTTGAAA+TGG | 0.443839 | 5.1:+56037557 | MS.gene35898:CDS |
| TCAATAATTCTGAAGATGAC+TGG | 0.446589 | 5.1:+56038774 | MS.gene35898:CDS |
| GGAAGAAACATTTACCGGTT+GGG | 0.451567 | 5.1:+56038796 | MS.gene35898:CDS |
| GTAAATACAATTGTAGCATA+TGG | 0.452563 | 5.1:+56040543 | MS.gene35898:intron |
| CGAGGATGAGGGTGAGAAGA+TGG | 0.453112 | 5.1:-56036446 | None:intergenic |
| GAGGTGTTGTTACGAGGATG+AGG | 0.453517 | 5.1:-56036458 | None:intergenic |
| GAACAAAGTCAAGAAGTCAT+TGG | 0.454433 | 5.1:+56038849 | MS.gene35898:CDS |
| GGACAGATACAGTGAACTTC+AGG | 0.454584 | 5.1:+56040752 | MS.gene35898:CDS |
| GACTGGGAAGAAACATTTAC+CGG | 0.465497 | 5.1:+56038791 | MS.gene35898:CDS |
| CGATCAATCCTCTTTCGGCC+TGG | 0.470126 | 5.1:+56039176 | MS.gene35898:CDS |
| GCTGGTGTGTTGAGCTCTGA+TGG | 0.477454 | 5.1:+56037579 | MS.gene35898:CDS |
| CAAGAAGTCATTGGGGACCT+TGG | 0.485464 | 5.1:+56038858 | MS.gene35898:CDS |
| CTCAGATACATCAACCCAAC+CGG | 0.488269 | 5.1:-56038810 | None:intergenic |
| CCTGGTCGCACTATTCTCGC+TGG | 0.489201 | 5.1:+56036608 | MS.gene35898:CDS |
| AGCATATGGCGCGTAGATGT+TGG | 0.492916 | 5.1:+56040557 | MS.gene35898:CDS |
| ATTATTAGGACAGAGACAAA+AGG | 0.495750 | 5.1:+56039142 | MS.gene35898:intron |
| CAATCCTCTTTCGGCCTGGT+GGG | 0.501687 | 5.1:+56039180 | MS.gene35898:CDS |
| TATTAGGTGTTGATTCAACT+TGG | 0.506397 | 5.1:+56038025 | MS.gene35898:intron |
| AAATTCCTTTCATTGCCACT+AGG | 0.509689 | 5.1:+56039724 | MS.gene35898:CDS |
| GTGGCCCACCAGGCCGAAAG+AGG | 0.510742 | 5.1:-56039184 | None:intergenic |
| TCAATCCTCTTTCGGCCTGG+TGG | 0.518213 | 5.1:+56039179 | MS.gene35898:CDS |
| AAGGCATGGTGTTGCACTCA+AGG | 0.519563 | 5.1:+56039223 | MS.gene35898:CDS |
| GGACATACTCCTCAAACTGT+TGG | 0.520775 | 5.1:+56040294 | MS.gene35898:CDS |
| CCAATGATCGCAGCAAGGAC+AGG | 0.523343 | 5.1:-56038084 | None:intergenic |
| TGAGTAGTTGGAGATTTACA+TGG | 0.525232 | 5.1:+56037522 | MS.gene35898:intron |
| TTGCACTCAAGGTTAATGAC+TGG | 0.526498 | 5.1:+56039234 | MS.gene35898:CDS |
| CAGGCCGAAAGAGGATTGAT+CGG | 0.532500 | 5.1:-56039175 | None:intergenic |
| AATACCTTCACTAAATTCCA+AGG | 0.532662 | 5.1:-56038875 | None:intergenic |
| GGGAAGAAACATTTACCGGT+TGG | 0.536242 | 5.1:+56038795 | MS.gene35898:CDS |
| CAATAATTCTGAAGATGACT+GGG | 0.536582 | 5.1:+56038775 | MS.gene35898:CDS |
| TGATGCTAAGGCAATGGTGG+TGG | 0.540164 | 5.1:+56040272 | MS.gene35898:CDS |
| AATTCCTTTCATTGCCACTA+GGG | 0.544604 | 5.1:+56039725 | MS.gene35898:CDS |
| AGGTGTTGTTACGAGGATGA+GGG | 0.544767 | 5.1:-56036457 | None:intergenic |
| TTGCAGCGTTTCTTCAAGAA+CGG | 0.547457 | 5.1:-56040244 | None:intergenic |
| AATGACTGGGTCTTCTGTCA+TGG | 0.548088 | 5.1:+56039248 | MS.gene35898:CDS |
| AGGCCGAAAGAGGATTGATC+GGG | 0.552133 | 5.1:-56039174 | None:intergenic |
| CCAGGAGCAGAAACAAAAGT+TGG | 0.553258 | 5.1:-56036590 | None:intergenic |
| TGAGACCATGAATGTGGAAG+GGG | 0.554110 | 5.1:+56038694 | MS.gene35898:CDS |
| TTCAGATATGTTGATTCTGG+AGG | 0.554414 | 5.1:+56038719 | MS.gene35898:CDS |
| TAGAGTTATAAGGACCAAAA+CGG | 0.555374 | 5.1:+56040731 | MS.gene35898:CDS |
| GAAAGAGAGGTGTTGTTACG+AGG | 0.555547 | 5.1:-56036464 | None:intergenic |
| ATACTACTGTCATTCTCACT+TGG | 0.556512 | 5.1:-56039699 | None:intergenic |
| GCTGCAAGCAGTTGATGCTA+AGG | 0.559445 | 5.1:+56040260 | MS.gene35898:CDS |
| ACTGACCGTGGTGAGGAAGA+AGG | 0.565272 | 5.1:-56039274 | None:intergenic |
| GCTCTGATGGTCAAGACTTG+TGG | 0.566662 | 5.1:+56037592 | MS.gene35898:CDS |
| TCACACGCCAGTGGCCCACC+AGG | 0.567392 | 5.1:-56039194 | None:intergenic |
| TGCACTCAAGGTTAATGACT+GGG | 0.567545 | 5.1:+56039235 | MS.gene35898:CDS |
| TCTTGAATTAAGGACTCCAC+TGG | 0.567571 | 5.1:-56040585 | None:intergenic |
| GGAGCAGAAACAAAAGTTGG+AGG | 0.570280 | 5.1:-56036587 | None:intergenic |
| TTATTAGGACAGAGACAAAA+GGG | 0.571241 | 5.1:+56039143 | MS.gene35898:intron |
| AGATATGCACTTGAAATGGC+TGG | 0.572444 | 5.1:+56037561 | MS.gene35898:CDS |
| GATGGTCAAGACTTGTGGAC+TGG | 0.574733 | 5.1:+56037597 | MS.gene35898:CDS |
| GCGTGTGAGCTTGCAAGGCA+TGG | 0.576777 | 5.1:+56039209 | MS.gene35898:CDS |
| CATGAGACCATGAATGTGGA+AGG | 0.579915 | 5.1:+56038692 | MS.gene35898:CDS |
| GGGACCTTGGAATTTAGTGA+AGG | 0.593234 | 5.1:+56038871 | MS.gene35898:CDS |
| TAACCCCTAGTGGCAATGAA+AGG | 0.595768 | 5.1:-56039729 | None:intergenic |
| CCAGCGAGAATAGTGCGACC+AGG | 0.596339 | 5.1:-56036608 | None:intergenic |
| GATAAACAAGCGAAATCGAA+AGG | 0.596790 | 5.1:+56038106 | MS.gene35898:CDS |
| ATTCCTTTCATTGCCACTAG+GGG | 0.605294 | 5.1:+56039726 | MS.gene35898:CDS |
| GGGTGAGAAGATGGTGAGAG+TGG | 0.608294 | 5.1:-56036437 | None:intergenic |
| ATGAGACCATGAATGTGGAA+GGG | 0.617703 | 5.1:+56038693 | MS.gene35898:CDS |
| GAGCAGAAACAAAAGTTGGA+GGG | 0.628318 | 5.1:-56036586 | None:intergenic |
| ACATACTCCTCAAACTGTTG+GGG | 0.629092 | 5.1:+56040296 | MS.gene35898:CDS |
| GGGTTGATGTATCTGAGAAG+TGG | 0.629338 | 5.1:+56038816 | MS.gene35898:CDS |
| GGCGGCCTTCTTCCTCACCA+CGG | 0.632687 | 5.1:+56039269 | MS.gene35898:CDS |
| CTTGCAAGCTCACACGCCAG+TGG | 0.635650 | 5.1:-56039203 | None:intergenic |
| TTTATCCAATGATCGCAGCA+AGG | 0.638421 | 5.1:-56038089 | None:intergenic |
| GTAAAATACTGACCGTGGTG+AGG | 0.638720 | 5.1:-56039281 | None:intergenic |
| TAGTTGCGTATGGTTTAGAG+CGG | 0.656501 | 5.1:+56039643 | MS.gene35898:intron |
| AGCAGTTGATGCTAAGGCAA+TGG | 0.660163 | 5.1:+56040266 | MS.gene35898:CDS |
| CTTGGAGATATATTAGATCG+AGG | 0.662741 | 5.1:+56038043 | MS.gene35898:CDS |
| GATGCTAAGGCAATGGTGGT+GGG | 0.662923 | 5.1:+56040273 | MS.gene35898:CDS |
| GGTCAAGACTTGTGGACTGG+TGG | 0.662970 | 5.1:+56037600 | MS.gene35898:CDS |
| AACACTGTCATAACCCCTAG+TGG | 0.665651 | 5.1:-56039739 | None:intergenic |
| AAACCATGAGACCATGAATG+TGG | 0.677540 | 5.1:+56038688 | MS.gene35898:CDS |
| AGTCCTTAATTCAAGACCTG+AGG | 0.680639 | 5.1:+56040592 | MS.gene35898:CDS |
| AAACAAGCGAAATCGAAAGG+TGG | 0.681777 | 5.1:+56038109 | MS.gene35898:CDS |
| CAGATACAGTGAACTTCAGG+CGG | 0.688619 | 5.1:+56040755 | MS.gene35898:CDS |
| GACTGGGTCTTCTGTCATGG+CGG | 0.692152 | 5.1:+56039251 | MS.gene35898:CDS |
| GTAGATGTTGGAATGTCCAG+TGG | 0.693208 | 5.1:+56040569 | MS.gene35898:CDS |
| AGTTGATGCTAAGGCAATGG+TGG | 0.697830 | 5.1:+56040269 | MS.gene35898:CDS |
| TGAACAAAGAAGTGTCTGAG+TGG | 0.728833 | 5.1:+56039667 | MS.gene35898:CDS |
| ACAAAGTCAAGAAGTCATTG+GGG | 0.742521 | 5.1:+56038851 | MS.gene35898:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATTAATTTTCAATAAA+TGG | + | chr5.1:56038642-56038661 | MS.gene35898:intron | 10.0% |
| !! | AAACTTCATAATAATAACAT+GGG | - | chr5.1:56038552-56038571 | None:intergenic | 15.0% |
| !! | AAATAAGCAAAATTAAGATA+TGG | - | chr5.1:56036652-56036671 | None:intergenic | 15.0% |
| !! | ATATATAAAAAACAGATAAC+AGG | - | chr5.1:56037478-56037497 | None:intergenic | 15.0% |
| !! | CAAATAATTCATTTCAAAAA+AGG | - | chr5.1:56038235-56038254 | None:intergenic | 15.0% |
| !! | CTACTTAATTTAGATAAAAA+TGG | - | chr5.1:56038575-56038594 | None:intergenic | 15.0% |
| !! | TCTAAGCTAAAAATATTATA+TGG | + | chr5.1:56039919-56039938 | MS.gene35898:intron | 15.0% |
| !!! | TCTTAATTTTGCTTATTTTT+TGG | + | chr5.1:56036654-56036673 | MS.gene35898:intron | 15.0% |
| !! | AACAAATTTAACATGGTATA+GGG | + | chr5.1:56040059-56040078 | MS.gene35898:intron | 20.0% |
| !! | AACTCAATAATTCAATATTC+AGG | + | chr5.1:56040215-56040234 | MS.gene35898:intron | 20.0% |
| !! | AATAATGAAAAGTTACAGAA+AGG | - | chr5.1:56040034-56040053 | None:intergenic | 20.0% |
| !! | ATAACTAATATACTAGCATT+TGG | - | chr5.1:56039408-56039427 | None:intergenic | 20.0% |
| !! | ATTCCTAATTCAAACTAATT+TGG | + | chr5.1:56038950-56038969 | MS.gene35898:intron | 20.0% |
| !! | GAAACTTCATAATAATAACA+TGG | - | chr5.1:56038553-56038572 | None:intergenic | 20.0% |
| !! | TTAAGTCAACAAATTTAACA+TGG | + | chr5.1:56040052-56040071 | MS.gene35898:intron | 20.0% |
| !! | TTGAATTAGGAATTTATTCT+TGG | - | chr5.1:56038943-56038962 | None:intergenic | 20.0% |
| !!! | AATATTTTTAGCTTAGACAA+GGG | - | chr5.1:56039916-56039935 | None:intergenic | 20.0% |
| !!! | ATTTTAATTCACTAATACGA+TGG | + | chr5.1:56037411-56037430 | MS.gene35898:intron | 20.0% |
| !!! | TAATATTTTTAGCTTAGACA+AGG | - | chr5.1:56039917-56039936 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTAGTATAGATTG+TGG | - | chr5.1:56040381-56040400 | None:intergenic | 20.0% |
| ! | AATAATTCCAAGAATGCTTA+AGG | - | chr5.1:56040345-56040364 | None:intergenic | 25.0% |
| ! | AATCAATTCAAGATACAGAT+GGG | - | chr5.1:56039518-56039537 | None:intergenic | 25.0% |
| ! | AGTACTATAAACAGTAAGAA+TGG | - | chr5.1:56037862-56037881 | None:intergenic | 25.0% |
| ! | CAAAATTAAGATATGGAAAG+AGG | - | chr5.1:56036645-56036664 | None:intergenic | 25.0% |
| ! | CAACAAATTTAACATGGTAT+AGG | + | chr5.1:56040058-56040077 | MS.gene35898:intron | 25.0% |
| ! | CTATTGTTGTCTTTAACATT+TGG | - | chr5.1:56038482-56038501 | None:intergenic | 25.0% |
| ! | GTAAATACAATTGTAGCATA+TGG | + | chr5.1:56040543-56040562 | MS.gene35898:intron | 25.0% |
| ! | TCACTATCTTGAATTGTATT+TGG | + | chr5.1:56039378-56039397 | MS.gene35898:intron | 25.0% |
| ! | TCATGTTAAACAAAACCAAA+AGG | - | chr5.1:56039310-56039329 | None:intergenic | 25.0% |
| ! | TTAAGGAAATAAGCTGAAAA+TGG | - | chr5.1:56038327-56038346 | None:intergenic | 25.0% |
| ! | TTGAATCAACACCTAATATA+CGG | - | chr5.1:56038023-56038042 | None:intergenic | 25.0% |
| ! | TTGTACAGTATGTGATTAAT+AGG | + | chr5.1:56039846-56039865 | MS.gene35898:intron | 25.0% |
| !! | AGAATTTTGTGCTAGAAATA+TGG | + | chr5.1:56037205-56037224 | MS.gene35898:intron | 25.0% |
| !! | GTCTTTAACATTTGGTAATT+AGG | - | chr5.1:56038474-56038493 | None:intergenic | 25.0% |
| !! | TTCAAACCTATTGTTGTTAT+TGG | + | chr5.1:56036560-56036579 | MS.gene35898:CDS | 25.0% |
| !! | TTGCCAAATTAGTTTGAATT+AGG | - | chr5.1:56038956-56038975 | None:intergenic | 25.0% |
| !!! | AACTACTTGATGATGTTTTA+AGG | - | chr5.1:56036541-56036560 | None:intergenic | 25.0% |
| AACAAAGTCAAGAAGTCATT+GGG | + | chr5.1:56038850-56038869 | MS.gene35898:CDS | 30.0% | |
| AATACCTTCACTAAATTCCA+AGG | - | chr5.1:56038878-56038897 | None:intergenic | 30.0% | |
| AATGAAAAGTTACAGAAAGG+TGG | - | chr5.1:56040031-56040050 | None:intergenic | 30.0% | |
| AATTAGGATCAAATGGAGAA+TGG | + | chr5.1:56037008-56037027 | MS.gene35898:intron | 30.0% | |
| ACAGTATGTGATTAATAGGA+AGG | + | chr5.1:56039850-56039869 | MS.gene35898:intron | 30.0% | |
| ACGATAAAGCTAGAGTTATA+AGG | + | chr5.1:56040721-56040740 | MS.gene35898:CDS | 30.0% | |
| ACTATAAACAGTAAGAATGG+AGG | - | chr5.1:56037859-56037878 | None:intergenic | 30.0% | |
| AGGATGAAGATAATATTACC+AGG | - | chr5.1:56039603-56039622 | None:intergenic | 30.0% | |
| AGTTTCACAAATGTATACTC+TGG | - | chr5.1:56038268-56038287 | None:intergenic | 30.0% | |
| ATCAATTCAAGATACAGATG+GGG | - | chr5.1:56039517-56039536 | None:intergenic | 30.0% | |
| ATGCTTACTGTCTTTCAAAA+TGG | + | chr5.1:56037632-56037651 | MS.gene35898:intron | 30.0% | |
| ATTAAAGCTGCTATCTCTAA+GGG | + | chr5.1:56038209-56038228 | MS.gene35898:intron | 30.0% | |
| ATTATTAGGACAGAGACAAA+AGG | + | chr5.1:56039142-56039161 | MS.gene35898:intron | 30.0% | |
| CAATATAATGCGTAATGAGT+AGG | - | chr5.1:56038523-56038542 | None:intergenic | 30.0% | |
| CAATCAATTCAAGATACAGA+TGG | - | chr5.1:56039519-56039538 | None:intergenic | 30.0% | |
| CAGAAAATGAAGAGACAAAA+AGG | - | chr5.1:56039623-56039642 | None:intergenic | 30.0% | |
| CTGTAAACTACAATAACTAC+TGG | - | chr5.1:56040661-56040680 | None:intergenic | 30.0% | |
| GCTACAATTGTATTTACTGT+AGG | - | chr5.1:56040540-56040559 | None:intergenic | 30.0% | |
| GGGTCATATAGACAAAATTT+CGG | + | chr5.1:56039034-56039053 | MS.gene35898:intron | 30.0% | |
| TAAAAAAAGTTCTGCAACAG+CGG | - | chr5.1:56036974-56036993 | None:intergenic | 30.0% | |
| TAAGATATGGAAAGAGGAAA+AGG | - | chr5.1:56036639-56036658 | None:intergenic | 30.0% | |
| TAGAGTTATAAGGACCAAAA+CGG | + | chr5.1:56040731-56040750 | MS.gene35898:CDS | 30.0% | |
| TAGCATAACTTTGACATCAT+AGG | - | chr5.1:56036800-56036819 | None:intergenic | 30.0% | |
| TGATGAATGTAGTGATTTCT+TGG | + | chr5.1:56038745-56038764 | MS.gene35898:CDS | 30.0% | |
| TTAAGATGTTTAGCCAAACA+AGG | + | chr5.1:56038448-56038467 | MS.gene35898:intron | 30.0% | |
| TTATTAGGACAGAGACAAAA+GGG | + | chr5.1:56039143-56039162 | MS.gene35898:intron | 30.0% | |
| TTTAACCCATGGAATTATCA+AGG | - | chr5.1:56037073-56037092 | None:intergenic | 30.0% | |
| TTTGTCTCTGTCCTAATAAT+CGG | - | chr5.1:56039142-56039161 | None:intergenic | 30.0% | |
| ! | CAATAATTCTGAAGATGACT+GGG | + | chr5.1:56038775-56038794 | MS.gene35898:CDS | 30.0% |
| ! | GATGAAGTTTTCCGATTATT+AGG | + | chr5.1:56039128-56039147 | MS.gene35898:intron | 30.0% |
| ! | TAAAACCTTTTACGCGAATT+AGG | + | chr5.1:56036992-56037011 | MS.gene35898:intron | 30.0% |
| ! | TCAATAATTCTGAAGATGAC+TGG | + | chr5.1:56038774-56038793 | MS.gene35898:CDS | 30.0% |
| ! | TCAGTATTTTACTGTCCTTT+TGG | + | chr5.1:56039292-56039311 | MS.gene35898:intron | 30.0% |
| ! | TGATTCAGCAAATTTGAAAC+AGG | - | chr5.1:56039558-56039577 | None:intergenic | 30.0% |
| ! | TTACTGTTAGCAGTTTTTGT+TGG | + | chr5.1:56037260-56037279 | MS.gene35898:intron | 30.0% |
| !! | ATGGCGTAGTAATGTTTTTA+TGG | + | chr5.1:56037027-56037046 | MS.gene35898:intron | 30.0% |
| !! | ATTAATAGGAAGGTATTGTG+CGG | + | chr5.1:56039860-56039879 | MS.gene35898:intron | 30.0% |
| !! | CGTAGTAATGTTTTTATGGA+AGG | + | chr5.1:56037031-56037050 | MS.gene35898:intron | 30.0% |
| !! | GATTTCAGATATGTTGATTC+TGG | + | chr5.1:56038716-56038735 | MS.gene35898:CDS | 30.0% |
| !! | GTTTGTTTTCTTTGAGTAGT+TGG | + | chr5.1:56037510-56037529 | MS.gene35898:intron | 30.0% |
| !! | TATTAGGTGTTGATTCAACT+TGG | + | chr5.1:56038025-56038044 | MS.gene35898:intron | 30.0% |
| !! | TGTTTCAGGTTTGTAATTTG+TGG | + | chr5.1:56038137-56038156 | MS.gene35898:intron | 30.0% |
| !! | TTACTTTTCCTCCGTATATT+AGG | + | chr5.1:56038009-56038028 | MS.gene35898:intron | 30.0% |
| !!! | GGATTTCTGTTAGTTTTAGT+TGG | + | chr5.1:56037653-56037672 | MS.gene35898:intron | 30.0% |
| AAAAAAAGTTCTGCAACAGC+GGG | - | chr5.1:56036973-56036992 | None:intergenic | 35.0% | |
| AAATTCCTTTCATTGCCACT+AGG | + | chr5.1:56039724-56039743 | MS.gene35898:CDS | 35.0% | |
| AATCAACACCTAATATACGG+AGG | - | chr5.1:56038020-56038039 | None:intergenic | 35.0% | |
| AATTCCTTTCATTGCCACTA+GGG | + | chr5.1:56039725-56039744 | MS.gene35898:CDS | 35.0% | |
| ACAAAGTCAAGAAGTCATTG+GGG | + | chr5.1:56038851-56038870 | MS.gene35898:CDS | 35.0% | |
| AGAAGAAGAAGAAGAAAGAG+AGG | - | chr5.1:56036480-56036499 | None:intergenic | 35.0% | |
| AGCTAGATATGCACTTGAAA+TGG | + | chr5.1:56037557-56037576 | MS.gene35898:CDS | 35.0% | |
| ATACTACTGTCATTCTCACT+TGG | - | chr5.1:56039702-56039721 | None:intergenic | 35.0% | |
| CAAGCAGGCATAATAGTTTA+TGG | - | chr5.1:56037146-56037165 | None:intergenic | 35.0% | |
| CAATACAAGTCATACTGAGA+CGG | - | chr5.1:56040184-56040203 | None:intergenic | 35.0% | |
| CATAAACTATTATGCCTGCT+TGG | + | chr5.1:56037144-56037163 | MS.gene35898:intron | 35.0% | |
| CATTAAAGCTGCTATCTCTA+AGG | + | chr5.1:56038208-56038227 | MS.gene35898:intron | 35.0% | |
| CTTATTTCCTTAAACTCTCC+AGG | + | chr5.1:56038334-56038353 | MS.gene35898:intron | 35.0% | |
| CTTGGAGATATATTAGATCG+AGG | + | chr5.1:56038043-56038062 | MS.gene35898:CDS | 35.0% | |
| GAAAGTTTCTGTGAACAGAA+TGG | + | chr5.1:56037379-56037398 | MS.gene35898:intron | 35.0% | |
| GAACAAAGTCAAGAAGTCAT+TGG | + | chr5.1:56038849-56038868 | MS.gene35898:CDS | 35.0% | |
| GACATTTCCTTAAGCATTCT+TGG | + | chr5.1:56040335-56040354 | MS.gene35898:intron | 35.0% | |
| GATAAACAAGCGAAATCGAA+AGG | + | chr5.1:56038106-56038125 | MS.gene35898:CDS | 35.0% | |
| GCTGAAAATGGACATATCAT+AGG | - | chr5.1:56038315-56038334 | None:intergenic | 35.0% | |
| TAGTGGCAATGAAAGGAATT+TGG | - | chr5.1:56039725-56039744 | None:intergenic | 35.0% | |
| TATAGCGACACTATAGCTTA+GGG | + | chr5.1:56037702-56037721 | MS.gene35898:intron | 35.0% | |
| TCCTTCACTAGAATTTACTG+CGG | + | chr5.1:56039443-56039462 | MS.gene35898:intron | 35.0% | |
| TGAGTAGTTGGAGATTTACA+TGG | + | chr5.1:56037522-56037541 | MS.gene35898:intron | 35.0% | |
| TTACCTCAGGTCTTGAATTA+AGG | - | chr5.1:56040598-56040617 | None:intergenic | 35.0% | |
| TTACGCGAATTAGGATCAAA+TGG | + | chr5.1:56037001-56037020 | MS.gene35898:intron | 35.0% | |
| TTCTGCTTTGTCTAGGTAAA+TGG | + | chr5.1:56038665-56038684 | MS.gene35898:intron | 35.0% | |
| TTGATCCTAATTCGCGTAAA+AGG | - | chr5.1:56037000-56037019 | None:intergenic | 35.0% | |
| TTTCTCTAATTTCAGATGCC+TGG | + | chr5.1:56039582-56039601 | MS.gene35898:intron | 35.0% | |
| ! | AGGCATCTGAAATTAGAGAA+AGG | - | chr5.1:56039583-56039602 | None:intergenic | 35.0% |
| ! | TAAATGGTTCTGCTTTGTCT+AGG | + | chr5.1:56038658-56038677 | MS.gene35898:intron | 35.0% |
| ! | TCATTTTCTGTAGTTGCGTA+TGG | + | chr5.1:56039633-56039652 | MS.gene35898:intron | 35.0% |
| ! | TTGATTCTGAAAAACCAAGC+AGG | - | chr5.1:56037161-56037180 | None:intergenic | 35.0% |
| ! | TTGCTCCTTGATAATTCCAT+GGG | + | chr5.1:56037065-56037084 | MS.gene35898:intron | 35.0% |
| ! | TTTGCTCCTTGATAATTCCA+TGG | + | chr5.1:56037064-56037083 | MS.gene35898:intron | 35.0% |
| !! | ACCAGATTTGATGGATTATG+AGG | + | chr5.1:56039791-56039810 | MS.gene35898:CDS | 35.0% |
| !! | ATGACAGTGTTGTTTGGAAT+CGG | + | chr5.1:56039751-56039770 | MS.gene35898:CDS | 35.0% |
| !! | CGTCTATAATTTCTAGAACC+TGG | - | chr5.1:56040704-56040723 | None:intergenic | 35.0% |
| !! | TGTTTTGAGCTAAGGGTAAA+AGG | - | chr5.1:56039479-56039498 | None:intergenic | 35.0% |
| !! | TTATTCCAGCACGTTGATTT+GGG | - | chr5.1:56039008-56039027 | None:intergenic | 35.0% |
| !! | TTCAGATATGTTGATTCTGG+AGG | + | chr5.1:56038719-56038738 | MS.gene35898:CDS | 35.0% |
| !! | TTTGGTAATTAGGCCTTGTT+TGG | - | chr5.1:56038464-56038483 | None:intergenic | 35.0% |
| !!! | AAATGCCAGATGCTTTTTCT+AGG | + | chr5.1:56040458-56040477 | MS.gene35898:intron | 35.0% |
| !!! | AGTTTTTGTTGGCTTTGCTT+TGG | + | chr5.1:56037271-56037290 | MS.gene35898:intron | 35.0% |
| AAACAAGCGAAATCGAAAGG+TGG | + | chr5.1:56038109-56038128 | MS.gene35898:CDS | 40.0% | |
| AAACCATGAGACCATGAATG+TGG | + | chr5.1:56038688-56038707 | MS.gene35898:CDS | 40.0% | |
| AACGTGCTGGAATAAGTTAC+GGG | + | chr5.1:56039013-56039032 | MS.gene35898:intron | 40.0% | |
| AAGAGACTCACCAGATTTGA+TGG | + | chr5.1:56039782-56039801 | MS.gene35898:CDS | 40.0% | |
| AAGCTATCCTGGAGAGTTTA+AGG | - | chr5.1:56038344-56038363 | None:intergenic | 40.0% | |
| ACAACAATAGTACACCGCTA+AGG | + | chr5.1:56038492-56038511 | MS.gene35898:intron | 40.0% | |
| ACAGTAAGAATGGAGGCTAA+TGG | - | chr5.1:56037852-56037871 | None:intergenic | 40.0% | |
| ACATACTCCTCAAACTGTTG+GGG | + | chr5.1:56040296-56040315 | MS.gene35898:CDS | 40.0% | |
| ACCGCAGTAAATTCTAGTGA+AGG | - | chr5.1:56039447-56039466 | None:intergenic | 40.0% | |
| AGATATGCACTTGAAATGGC+TGG | + | chr5.1:56037561-56037580 | MS.gene35898:CDS | 40.0% | |
| AGTCCTTAATTCAAGACCTG+AGG | + | chr5.1:56040592-56040611 | MS.gene35898:CDS | 40.0% | |
| ATGAGACCATGAATGTGGAA+GGG | + | chr5.1:56038693-56038712 | MS.gene35898:CDS | 40.0% | |
| ATGAGTAGGCATATCCTTAG+CGG | - | chr5.1:56038509-56038528 | None:intergenic | 40.0% | |
| ATTCCTTTCATTGCCACTAG+GGG | + | chr5.1:56039726-56039745 | MS.gene35898:CDS | 40.0% | |
| CAACGTGCTGGAATAAGTTA+CGG | + | chr5.1:56039012-56039031 | MS.gene35898:intron | 40.0% | |
| CAAGACCTGAGGTAAATCAA+AGG | + | chr5.1:56040603-56040622 | MS.gene35898:intron | 40.0% | |
| CAATCTGTGATTGAACACTG+GGG | + | chr5.1:56037826-56037845 | MS.gene35898:intron | 40.0% | |
| CAATTTACCCCAACAGTTTG+AGG | - | chr5.1:56040306-56040325 | None:intergenic | 40.0% | |
| CTAGGTCAGTTAGTGCTTTA+TGG | + | chr5.1:56040476-56040495 | MS.gene35898:intron | 40.0% | |
| CTATAGCGACACTATAGCTT+AGG | + | chr5.1:56037701-56037720 | MS.gene35898:intron | 40.0% | |
| CTCAAACTGTTGGGGTAAAT+TGG | + | chr5.1:56040304-56040323 | MS.gene35898:CDS | 40.0% | |
| GAACATGTGAAGACTCATGT+AGG | - | chr5.1:56040629-56040648 | None:intergenic | 40.0% | |
| GACATACTCCTCAAACTGTT+GGG | + | chr5.1:56040295-56040314 | MS.gene35898:CDS | 40.0% | |
| GACTGGGAAGAAACATTTAC+CGG | + | chr5.1:56038791-56038810 | MS.gene35898:CDS | 40.0% | |
| GAGCAGAAACAAAAGTTGGA+GGG | - | chr5.1:56036589-56036608 | None:intergenic | 40.0% | |
| GCAATCTGTGATTGAACACT+GGG | + | chr5.1:56037825-56037844 | MS.gene35898:intron | 40.0% | |
| GCCTCATAATCCATCAAATC+TGG | - | chr5.1:56039795-56039814 | None:intergenic | 40.0% | |
| GGGTCACCAATAACAACAAT+AGG | - | chr5.1:56036569-56036588 | None:intergenic | 40.0% | |
| GTCAAATAGCAGCGATATAG+CGG | + | chr5.1:56037778-56037797 | MS.gene35898:intron | 40.0% | |
| GTCAGTTAGTGCTTTATGGA+TGG | + | chr5.1:56040480-56040499 | MS.gene35898:intron | 40.0% | |
| GTGTTGTGTTCTTATTCTCC+AGG | + | chr5.1:56040683-56040702 | MS.gene35898:intron | 40.0% | |
| TAAACTCTCCAGGATAGCTT+AGG | + | chr5.1:56038344-56038363 | MS.gene35898:intron | 40.0% | |
| TAATTCCCAAATCAACGTGC+TGG | + | chr5.1:56039000-56039019 | MS.gene35898:intron | 40.0% | |
| TAGTTGCGTATGGTTTAGAG+CGG | + | chr5.1:56039643-56039662 | MS.gene35898:intron | 40.0% | |
| TCAAGATACAGATGGGGATT+GGG | - | chr5.1:56039511-56039530 | None:intergenic | 40.0% | |
| TCTTGAATTAAGGACTCCAC+TGG | - | chr5.1:56040588-56040607 | None:intergenic | 40.0% | |
| TGATACTGTCACAATTGCAG+TGG | + | chr5.1:56036922-56036941 | MS.gene35898:intron | 40.0% | |
| TGCAATCTGTGATTGAACAC+TGG | + | chr5.1:56037824-56037843 | MS.gene35898:intron | 40.0% | |
| TGCACTCAAGGTTAATGACT+GGG | + | chr5.1:56039235-56039254 | MS.gene35898:CDS | 40.0% | |
| TTCAAGATACAGATGGGGAT+TGG | - | chr5.1:56039512-56039531 | None:intergenic | 40.0% | |
| TTGCACTCAAGGTTAATGAC+TGG | + | chr5.1:56039234-56039253 | MS.gene35898:CDS | 40.0% | |
| TTGCAGCGTTTCTTCAAGAA+CGG | - | chr5.1:56040247-56040266 | None:intergenic | 40.0% | |
| TTGTGTTTCCTAAGCTATCC+TGG | - | chr5.1:56038355-56038374 | None:intergenic | 40.0% | |
| TTTATCCAATGATCGCAGCA+AGG | - | chr5.1:56038092-56038111 | None:intergenic | 40.0% | |
| ! | CTTATTCCAGCACGTTGATT+TGG | - | chr5.1:56039009-56039028 | None:intergenic | 40.0% |
| ! | GGAAGAAACATTTACCGGTT+GGG | + | chr5.1:56038796-56038815 | MS.gene35898:CDS | 40.0% |
| ! | TTCACTGTATCTGTCCGTTT+TGG | - | chr5.1:56040748-56040767 | None:intergenic | 40.0% |
| ! | TTCAGTTCAGCTTTAACCCA+TGG | - | chr5.1:56037084-56037103 | None:intergenic | 40.0% |
| ! | TTTAGCTTAGACAAGGGAGA+GGG | - | chr5.1:56039910-56039929 | None:intergenic | 40.0% |
| !! | ACTGACCTAGAAAAAGCATC+TGG | - | chr5.1:56040466-56040485 | None:intergenic | 40.0% |
| !! | AGCACGTTGATTTGGGAATT+AGG | - | chr5.1:56039001-56039020 | None:intergenic | 40.0% |
| !! | AGCTCAACTGTTTTGAGCTA+AGG | - | chr5.1:56039487-56039506 | None:intergenic | 40.0% |
| !! | GATGGATTATGAGGCTAAAC+AGG | + | chr5.1:56039800-56039819 | MS.gene35898:CDS | 40.0% |
| !! | GCTCAACTGTTTTGAGCTAA+GGG | - | chr5.1:56039486-56039505 | None:intergenic | 40.0% |
| !! | TGAACAAAGAAGTGTCTGAG+TGG | + | chr5.1:56039667-56039686 | MS.gene35898:CDS | 40.0% |
| !!! | AGTCACGAAGCTAGTTTTCA+GGG | - | chr5.1:56040008-56040027 | None:intergenic | 40.0% |
| !!! | TTTTAGCTTAGACAAGGGAG+AGG | - | chr5.1:56039911-56039930 | None:intergenic | 40.0% |
| AACACTGTCATAACCCCTAG+TGG | - | chr5.1:56039742-56039761 | None:intergenic | 45.0% | |
| AATGACTGGGTCTTCTGTCA+TGG | + | chr5.1:56039248-56039267 | MS.gene35898:CDS | 45.0% | |
| ACGTGCTGGAATAAGTTACG+GGG | + | chr5.1:56039014-56039033 | MS.gene35898:intron | 45.0% | |
| AGCAACTATGCGCAATAGCA+AGG | - | chr5.1:56036769-56036788 | None:intergenic | 45.0% | |
| CAGATACAGTGAACTTCAGG+CGG | + | chr5.1:56040755-56040774 | MS.gene35898:CDS | 45.0% | |
| CATGAGACCATGAATGTGGA+AGG | + | chr5.1:56038692-56038711 | MS.gene35898:CDS | 45.0% | |
| CCAGGAGCAGAAACAAAAGT+TGG | - | chr5.1:56036593-56036612 | None:intergenic | 45.0% | |
| CTCAGATACATCAACCCAAC+CGG | - | chr5.1:56038813-56038832 | None:intergenic | 45.0% | |
| CTTCCACATTCATGGTCTCA+TGG | - | chr5.1:56038694-56038713 | None:intergenic | 45.0% | |
| GAAATCCCCTTCCACATTCA+TGG | - | chr5.1:56038702-56038721 | None:intergenic | 45.0% | |
| GGACAGATACAGTGAACTTC+AGG | + | chr5.1:56040752-56040771 | MS.gene35898:CDS | 45.0% | |
| GGACAGTAAAATACTGACCG+TGG | - | chr5.1:56039289-56039308 | None:intergenic | 45.0% | |
| GGACATACTCCTCAAACTGT+TGG | + | chr5.1:56040294-56040313 | MS.gene35898:CDS | 45.0% | |
| GGAGCAGAAACAAAAGTTGG+AGG | - | chr5.1:56036590-56036609 | None:intergenic | 45.0% | |
| GGGAAGAAACATTTACCGGT+TGG | + | chr5.1:56038795-56038814 | MS.gene35898:CDS | 45.0% | |
| GGGACCTTGGAATTTAGTGA+AGG | + | chr5.1:56038871-56038890 | MS.gene35898:CDS | 45.0% | |
| GTAAAATACTGACCGTGGTG+AGG | - | chr5.1:56039284-56039303 | None:intergenic | 45.0% | |
| GTAGATGTTGGAATGTCCAG+TGG | + | chr5.1:56040569-56040588 | MS.gene35898:CDS | 45.0% | |
| TAACCCCTAGTGGCAATGAA+AGG | - | chr5.1:56039732-56039751 | None:intergenic | 45.0% | |
| TGAGACCATGAATGTGGAAG+GGG | + | chr5.1:56038694-56038713 | MS.gene35898:CDS | 45.0% | |
| TTGCCCGATCAATCCTCTTT+CGG | + | chr5.1:56039171-56039190 | MS.gene35898:CDS | 45.0% | |
| ! | AGCAGTTGATGCTAAGGCAA+TGG | + | chr5.1:56040266-56040285 | MS.gene35898:CDS | 45.0% |
| ! | AGTTGATGCTAAGGCAATGG+TGG | + | chr5.1:56040269-56040288 | MS.gene35898:CDS | 45.0% |
| ! | GGGGTTATGACAGTGTTGTT+TGG | + | chr5.1:56039745-56039764 | MS.gene35898:CDS | 45.0% |
| ! | GTAGGCCTTTGATTTACCTC+AGG | - | chr5.1:56040611-56040630 | None:intergenic | 45.0% |
| !! | AGGTGTTGTTACGAGGATGA+GGG | - | chr5.1:56036460-56036479 | None:intergenic | 45.0% |
| !! | GAAAGAGAGGTGTTGTTACG+AGG | - | chr5.1:56036467-56036486 | None:intergenic | 45.0% |
| !! | GGGTTGATGTATCTGAGAAG+TGG | + | chr5.1:56038816-56038835 | MS.gene35898:CDS | 45.0% |
| !!! | CCAACTTTTGTTTCTGCTCC+TGG | + | chr5.1:56036590-56036609 | MS.gene35898:CDS | 45.0% |
| !!! | CGAAGCTAGTTTTCAGGGAA+AGG | - | chr5.1:56040003-56040022 | None:intergenic | 45.0% |
| !!! | GAGTCACGAAGCTAGTTTTC+AGG | - | chr5.1:56040009-56040028 | None:intergenic | 45.0% |
| AGCATATGGCGCGTAGATGT+TGG | + | chr5.1:56040557-56040576 | MS.gene35898:CDS | 50.0% | |
| AGGCCGAAAGAGGATTGATC+GGG | - | chr5.1:56039177-56039196 | None:intergenic | 50.0% | |
| CAAGAAGTCATTGGGGACCT+TGG | + | chr5.1:56038858-56038877 | MS.gene35898:CDS | 50.0% | |
| CAGGCCGAAAGAGGATTGAT+CGG | - | chr5.1:56039178-56039197 | None:intergenic | 50.0% | |
| GAAAGGTGGAGCTGTGTTTC+AGG | + | chr5.1:56038123-56038142 | MS.gene35898:CDS | 50.0% | |
| GATGCTAAGGCAATGGTGGT+GGG | + | chr5.1:56040273-56040292 | MS.gene35898:CDS | 50.0% | |
| GATGGTCAAGACTTGTGGAC+TGG | + | chr5.1:56037597-56037616 | MS.gene35898:CDS | 50.0% | |
| GCTCTGATGGTCAAGACTTG+TGG | + | chr5.1:56037592-56037611 | MS.gene35898:CDS | 50.0% | |
| TGATGCTAAGGCAATGGTGG+TGG | + | chr5.1:56040272-56040291 | MS.gene35898:CDS | 50.0% | |
| ! | GCTGCAAGCAGTTGATGCTA+AGG | + | chr5.1:56040260-56040279 | MS.gene35898:CDS | 50.0% |
| !! | AAGGCATGGTGTTGCACTCA+AGG | + | chr5.1:56039223-56039242 | MS.gene35898:CDS | 50.0% |
| !! | GAGGTGTTGTTACGAGGATG+AGG | - | chr5.1:56036461-56036480 | None:intergenic | 50.0% |
| ACTGACCGTGGTGAGGAAGA+AGG | - | chr5.1:56039277-56039296 | None:intergenic | 55.0% | |
| CAATCCTCTTTCGGCCTGGT+GGG | + | chr5.1:56039180-56039199 | MS.gene35898:CDS | 55.0% | |
| CCAATGATCGCAGCAAGGAC+AGG | - | chr5.1:56038087-56038106 | None:intergenic | 55.0% | |
| CCTGTCCTTGCTGCGATCAT+TGG | + | chr5.1:56038084-56038103 | MS.gene35898:CDS | 55.0% | |
| CGAGGATGAGGGTGAGAAGA+TGG | - | chr5.1:56036449-56036468 | None:intergenic | 55.0% | |
| CGATCAATCCTCTTTCGGCC+TGG | + | chr5.1:56039176-56039195 | MS.gene35898:CDS | 55.0% | |
| GACTGGGTCTTCTGTCATGG+CGG | + | chr5.1:56039251-56039270 | MS.gene35898:CDS | 55.0% | |
| GGGTGAGAAGATGGTGAGAG+TGG | - | chr5.1:56036440-56036459 | None:intergenic | 55.0% | |
| TCAATCCTCTTTCGGCCTGG+TGG | + | chr5.1:56039179-56039198 | MS.gene35898:CDS | 55.0% | |
| TGTCAGTGCAGTGTCGTGTC+TGG | - | chr5.1:56039974-56039993 | None:intergenic | 55.0% | |
| ! | GCTGGTGTGTTGAGCTCTGA+TGG | + | chr5.1:56037579-56037598 | MS.gene35898:CDS | 55.0% |
| !! | GGTCAAGACTTGTGGACTGG+TGG | + | chr5.1:56037600-56037619 | MS.gene35898:CDS | 55.0% |
| CACTGGCGTGTGAGCTTGCA+AGG | + | chr5.1:56039204-56039223 | MS.gene35898:CDS | 60.0% | |
| CCAGCGAGAATAGTGCGACC+AGG | - | chr5.1:56036611-56036630 | None:intergenic | 60.0% | |
| CCTGGTCGCACTATTCTCGC+TGG | + | chr5.1:56036608-56036627 | MS.gene35898:CDS | 60.0% | |
| CTTGCAAGCTCACACGCCAG+TGG | - | chr5.1:56039206-56039225 | None:intergenic | 60.0% | |
| GCGTGTGAGCTTGCAAGGCA+TGG | + | chr5.1:56039209-56039228 | MS.gene35898:CDS | 60.0% | |
| GGCGGCCTTCTTCCTCACCA+CGG | + | chr5.1:56039269-56039288 | MS.gene35898:CDS | 65.0% | |
| GTGGCCCACCAGGCCGAAAG+AGG | - | chr5.1:56039187-56039206 | None:intergenic | 70.0% | |
| TCACACGCCAGTGGCCCACC+AGG | - | chr5.1:56039197-56039216 | None:intergenic | 70.0% | |
| ! | CTTTCGGCCTGGTGGGCCAC+TGG | + | chr5.1:56039187-56039206 | MS.gene35898:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 56036407 | 56040791 | 56036407 | ID=MS.gene35898 |
| chr5.1 | mRNA | 56036407 | 56040791 | 56036407 | ID=MS.gene35898.t1;Parent=MS.gene35898 |
| chr5.1 | exon | 56036407 | 56036629 | 56036407 | ID=MS.gene35898.t1.exon1;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56036407 | 56036629 | 56036407 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56037529 | 56037629 | 56037529 | ID=MS.gene35898.t1.exon2;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56037529 | 56037629 | 56037529 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56038031 | 56038144 | 56038031 | ID=MS.gene35898.t1.exon3;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56038031 | 56038144 | 56038031 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56038680 | 56038892 | 56038680 | ID=MS.gene35898.t1.exon4;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56038680 | 56038892 | 56038680 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56039155 | 56039290 | 56039155 | ID=MS.gene35898.t1.exon5;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56039155 | 56039290 | 56039155 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56039646 | 56039821 | 56039646 | ID=MS.gene35898.t1.exon6;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56039646 | 56039821 | 56039646 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56040237 | 56040325 | 56040237 | ID=MS.gene35898.t1.exon7;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56040237 | 56040325 | 56040237 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56040544 | 56040613 | 56040544 | ID=MS.gene35898.t1.exon8;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56040544 | 56040613 | 56040544 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| chr5.1 | exon | 56040705 | 56040791 | 56040705 | ID=MS.gene35898.t1.exon9;Parent=MS.gene35898.t1 |
| chr5.1 | CDS | 56040705 | 56040791 | 56040705 | ID=cds.MS.gene35898.t1;Parent=MS.gene35898.t1 |
| Gene Sequence |
| Protein sequence |
