AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41881


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41881.t1 MTR_7g088340 99.752 403 1 0 1 403 1 403 0.0 833
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41881.t1 AT3G56940 85.366 410 52 4 1 403 1 409 0.0 694
MS.gene41881.t1 AT3G56940 91.867 332 27 0 72 403 1 332 0.0 642

Find 83 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAGGAACAAGGAGTTTA+AGG 0.155204 7.2:+20348720 MS.gene41881:CDS
ACATATTTGTCTGAGAAAAT+TGG 0.198268 7.2:+20349664 MS.gene41881:CDS
TGTAGCATAGAAAATAAATT+TGG 0.215744 7.2:-20349644 None:intergenic
CTTCAAACTCATCTTCATTA+AGG 0.226003 7.2:-20348654 None:intergenic
CTAGGAATGTTGCTGAATTT+TGG 0.226018 7.2:-20348451 None:intergenic
TATGATGAAACTGTTCTTCT+AGG 0.267498 7.2:-20348469 None:intergenic
GGGTTTATCTGATTTCAATT+TGG 0.291421 7.2:+20349570 MS.gene41881:CDS
TCCAACTTTCGCTTAAACTC+TGG 0.309477 7.2:-20350645 None:intergenic
TTGTTTGAGATGTCTGTAAA+TGG 0.309829 7.2:-20349704 None:intergenic
TGCCCTGGTGTCTGAGCTCT+TGG 0.335522 7.2:+20350761 MS.gene41881:CDS
TCCAATTATGGCAGCAGAAA+TGG 0.336647 7.2:+20348399 None:intergenic
CGCCAATAGCAAGAATCTTC+TGG 0.346835 7.2:-20350686 None:intergenic
TGTCAAAAGGGTTTCTTTGA+TGG 0.359839 7.2:-20348566 None:intergenic
TGAGTTTGAAGCTTTGCTTC+AGG 0.359858 7.2:+20348666 MS.gene41881:CDS
AACCAGAAGATTCTTGCTAT+TGG 0.360172 7.2:+20350684 MS.gene41881:CDS
CAGTAGTGAAGAACTTTAAG+AGG 0.381376 7.2:+20350724 MS.gene41881:CDS
TTTCAATTTGGCATTGGACT+TGG 0.383087 7.2:+20349582 MS.gene41881:CDS
ACAGATTTCTATGAAGGAAT+TGG 0.383574 7.2:+20350366 MS.gene41881:CDS
TGGAGTAGCAGACATTCTTA+TGG 0.384160 7.2:-20348494 None:intergenic
CTCCATGCCTGTTCTCATCT+TGG 0.390251 7.2:-20349777 None:intergenic
TCTTGTACTGCTGAATTCTC+TGG 0.393467 7.2:+20348802 MS.gene41881:CDS
TGTAGAATCTTGGTGTCAAA+AGG 0.394484 7.2:-20348579 None:intergenic
TGTTAATCTCAGTGTTGAAA+AGG 0.401359 7.2:-20348627 None:intergenic
AAATGGGATAACATTGGTAC+TGG 0.401704 7.2:-20349732 None:intergenic
AGATTTCCCCGAGTTTGAAC+GGG 0.402594 7.2:+20350821 MS.gene41881:CDS
GTAGCATAGAAAATAAATTT+GGG 0.422678 7.2:-20349643 None:intergenic
GGAAAATCCTTGCAGTTGTT+CGG 0.423810 7.2:-20350599 None:intergenic
CCAACTTTCGCTTAAACTCT+GGG 0.428319 7.2:-20350644 None:intergenic
TTCTCAACATCAAGTACAGC+TGG 0.433804 7.2:-20350621 None:intergenic
TCTACAGATCCTGACTCAAT+TGG 0.440826 7.2:-20350801 None:intergenic
TGTCTGAGAAAATTGGATAC+TGG 0.442138 7.2:+20349671 MS.gene41881:CDS
AGAGCTTGGAAGGAGGCTTA+AGG 0.444337 7.2:+20348840 MS.gene41881:CDS
GTCTCGCTTCTTCTGTCTAT+CGG 0.446676 7.2:+20349864 MS.gene41881:CDS
TTCAATTTGGCATTGGACTT+GGG 0.448463 7.2:+20349583 MS.gene41881:CDS
ATCTGATTTCAATTTGGCAT+TGG 0.448946 7.2:+20349576 MS.gene41881:CDS
AAATCAGTTGTGTAGAATCT+TGG 0.450494 7.2:-20348589 None:intergenic
GTTGATGTTGGTGTTGCTGT+TGG 0.457229 7.2:-20348514 None:intergenic
TTTCTTCTTTACAAAGAGCT+TGG 0.457238 7.2:+20348826 MS.gene41881:CDS
GAAGCTGCTGATAAACTTGA+TGG 0.462581 7.2:+20348742 MS.gene41881:CDS
GATTCCACTGATTGCTGCCC+TGG 0.462886 7.2:+20350746 MS.gene41881:CDS
ACTGGTGCCAAGATGAGAAC+AGG 0.463603 7.2:+20349770 MS.gene41881:CDS
CAACGCACAGATTTCTATGA+AGG 0.466878 7.2:+20350360 MS.gene41881:CDS
GAGAAAATCTCAGCCACCAC+AGG 0.468845 7.2:-20349349 None:intergenic
TGACATGCATGTCATAATTG+AGG 0.472656 7.2:+20350407 MS.gene41881:CDS
TCAACAAAGATTTGTCTAAG+AGG 0.479934 7.2:-20348766 None:intergenic
CCCAGAGTTTAAGCGAAAGT+TGG 0.480762 7.2:+20350644 MS.gene41881:CDS
TTCTTTACAAAGAGCTTGGA+AGG 0.481464 7.2:+20348830 MS.gene41881:CDS
CAGCCAAGAGCTCAGACACC+AGG 0.485992 7.2:-20350764 None:intergenic
AGGGATGAAGCTAGGCATGC+AGG 0.486460 7.2:+20349382 MS.gene41881:CDS
GTTAATCTCAGTGTTGAAAA+GGG 0.488825 7.2:-20348626 None:intergenic
CTGATGAAACCAATTGAGTC+AGG 0.490154 7.2:+20350792 MS.gene41881:CDS
AGCCACAATTTCTCAATGAC+TGG 0.497869 7.2:+20349827 MS.gene41881:CDS
TAGATTTCCCCGAGTTTGAA+CGG 0.510974 7.2:+20350820 MS.gene41881:CDS
TTCCAGTCATTGAGAAATTG+TGG 0.544317 7.2:-20349829 None:intergenic
TCTGGTTTATCACCACCATC+CGG 0.544659 7.2:-20350668 None:intergenic
CTTCATAGAAATCTGTGCGT+TGG 0.549607 7.2:-20350359 None:intergenic
CAACAAAGATTTGTCTAAGA+GGG 0.554481 7.2:-20348765 None:intergenic
TAAGCGAAAGTTGGACCGGA+TGG 0.558726 7.2:+20350653 MS.gene41881:CDS
TGGGATTCTTGACAAAGGCT+AGG 0.562165 7.2:+20349602 MS.gene41881:CDS
AGTTTAAGCGAAAGTTGGAC+CGG 0.563653 7.2:+20350649 MS.gene41881:CDS
GTAGAATCTTGGTGTCAAAA+GGG 0.566760 7.2:-20348578 None:intergenic
TGATGTCCAGGGATGAAGCT+AGG 0.568865 7.2:+20349374 MS.gene41881:CDS
GGGATGAAGCTAGGCATGCA+GGG 0.570218 7.2:+20349383 MS.gene41881:CDS
AATCTCAGCCACCACAGGGT+TGG 0.573147 7.2:-20349344 None:intergenic
TGCATGCCTAGCTTCATCCC+TGG 0.573968 7.2:-20349380 None:intergenic
AATGGGATAACATTGGTACT+GGG 0.579425 7.2:-20349731 None:intergenic
AGCCAAGAGCTCAGACACCA+GGG 0.597779 7.2:-20350763 None:intergenic
TGCCAAGATGAGAACAGGCA+TGG 0.599459 7.2:+20349775 MS.gene41881:CDS
GATTTCCCCGAGTTTGAACG+GGG 0.604146 7.2:+20350822 MS.gene41881:CDS
GCGAAAGTTGGACCGGATGG+TGG 0.607374 7.2:+20350656 MS.gene41881:CDS
TCTTTGTTGAGTTTCTTGAG+AGG 0.612368 7.2:+20348779 MS.gene41881:CDS
ACAATTTCTCAATGACTGGA+AGG 0.625428 7.2:+20349831 MS.gene41881:CDS
GGACTTGGGATTCTTGACAA+AGG 0.631481 7.2:+20349597 MS.gene41881:CDS
GACACCAGGGCAGCAATCAG+TGG 0.632610 7.2:-20350750 None:intergenic
ATGACTGGAAGGCGAAGTTG+TGG 0.637540 7.2:+20349842 MS.gene41881:CDS
TTTACAAAGAGCTTGGAAGG+AGG 0.638627 7.2:+20348833 MS.gene41881:CDS
TCTCAACATCAAGTACAGCT+GGG 0.645846 7.2:-20350620 None:intergenic
ATGGGATAACATTGGTACTG+GGG 0.655340 7.2:-20349730 None:intergenic
AGAAAATCTCAGCCACCACA+GGG 0.658199 7.2:-20349348 None:intergenic
AGACAAACCGAACAACTGCA+AGG 0.671868 7.2:+20350592 MS.gene41881:intron
GCAGAAAACCAACCCTGTGG+TGG 0.689928 7.2:+20349336 MS.gene41881:intron
ATTTCCCCGAGTTTGAACGG+GGG 0.763129 7.2:+20350823 MS.gene41881:CDS
ATGGCAGAAAACCAACCCTG+TGG 0.816011 7.2:+20349333 MS.gene41881:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATATACATTAGTTA+CGG + chr7.2:20349482-20349501 MS.gene41881:intron 15.0%
!! TTGAAATATTAATAATTCCA+GGG + chr7.2:20349041-20349060 MS.gene41881:intron 15.0%
!!! TTTGAAATATTAATAATTCC+AGG + chr7.2:20349040-20349059 MS.gene41881:intron 15.0%
!! AGTTGATTAACTAAGAATAA+AGG + chr7.2:20350515-20350534 MS.gene41881:intron 20.0%
!! ATATCATAAATTTAGCAACT+TGG + chr7.2:20348931-20348950 MS.gene41881:intron 20.0%
!! ATTGTAAATTTGCAATTTCA+AGG + chr7.2:20348992-20349011 MS.gene41881:intron 20.0%
!! CTTATCATAAGTGTTAATAA+CGG - chr7.2:20350491-20350510 None:intergenic 20.0%
!! GTAGCATAGAAAATAAATTT+GGG - chr7.2:20349646-20349665 None:intergenic 20.0%
!! TGTAGCATAGAAAATAAATT+TGG - chr7.2:20349647-20349666 None:intergenic 20.0%
!! TTAATATTTCAAAATAACCC+TGG - chr7.2:20349033-20349052 None:intergenic 20.0%
!! TTGTAAATTTGCAATTTCAA+GGG + chr7.2:20348993-20349012 MS.gene41881:intron 20.0%
!! TTTCAACTTAAGAAACTTAA+AGG - chr7.2:20349927-20349946 None:intergenic 20.0%
!!! AAGCTTATGAATTTTGAAAT+AGG + chr7.2:20348960-20348979 MS.gene41881:intron 20.0%
!!! ATTTTGGTTTTATGACATTT+TGG + chr7.2:20349201-20349220 MS.gene41881:intron 20.0%
!!! TGATAACTATGTTTTAAGTA+GGG - chr7.2:20350296-20350315 None:intergenic 20.0%
!!! TTCTCAAAGTACTTAAAAAT+GGG - chr7.2:20349751-20349770 None:intergenic 20.0%
!!! TTGATAACTATGTTTTAAGT+AGG - chr7.2:20350297-20350316 None:intergenic 20.0%
!!! TTTTTCTTGTTTTCTATTCA+TGG + chr7.2:20349285-20349304 MS.gene41881:intron 20.0%
! ACATATTTGTCTGAGAAAAT+TGG + chr7.2:20349664-20349683 MS.gene41881:CDS 25.0%
! ACTTAAAAATGGGATAACAT+TGG - chr7.2:20349741-20349760 None:intergenic 25.0%
! CATAATCTCTGTCAAATTAA+TGG + chr7.2:20350453-20350472 MS.gene41881:intron 25.0%
! GCTAAATTGAATGTTGAATA+AGG - chr7.2:20348895-20348914 None:intergenic 25.0%
! TGTTAAGTATTATGTAACTC+AGG - chr7.2:20349974-20349993 None:intergenic 25.0%
!! ACAATCAAACTCATTTTGTT+AGG + chr7.2:20348704-20348723 MS.gene41881:CDS 25.0%
!! ATATGCAGGTTTTTGAATAA+GGG + chr7.2:20349550-20349569 MS.gene41881:intron 25.0%
!! CATTAATTTGACAGAGATTA+TGG - chr7.2:20350455-20350474 None:intergenic 25.0%
!! GTTCTCAAAGTACTTAAAAA+TGG - chr7.2:20349752-20349771 None:intergenic 25.0%
!! TATATGCAGGTTTTTGAATA+AGG + chr7.2:20349549-20349568 MS.gene41881:intron 25.0%
!!! TGTTCTTTTGATTTATATGC+AGG + chr7.2:20349536-20349555 MS.gene41881:intron 25.0%
!!! TTTGGTGTGAATTTTGAAAT+TGG - chr7.2:20348436-20348455 None:intergenic 25.0%
!!! TTTTTAAGTACTTTGAGAAC+TGG + chr7.2:20349752-20349771 MS.gene41881:CDS 25.0%
AAATCAGTTGTGTAGAATCT+TGG - chr7.2:20348592-20348611 None:intergenic 30.0%
ACAGATTTCTATGAAGGAAT+TGG + chr7.2:20350366-20350385 MS.gene41881:CDS 30.0%
AGTTATCAAATTTGTGTTGC+AGG + chr7.2:20350308-20350327 MS.gene41881:intron 30.0%
ATATTGCATGGGATTTGATA+TGG + chr7.2:20349314-20349333 MS.gene41881:intron 30.0%
ATCTGATTTCAATTTGGCAT+TGG + chr7.2:20349576-20349595 MS.gene41881:CDS 30.0%
ATGCAGAATTAGATTTACCT+TGG + chr7.2:20350191-20350210 MS.gene41881:intron 30.0%
CAACAAAGATTTGTCTAAGA+GGG - chr7.2:20348768-20348787 None:intergenic 30.0%
CTAGACATATAGACAAGTAA+AGG - chr7.2:20349426-20349445 None:intergenic 30.0%
CTTCAAACTCATCTTCATTA+AGG - chr7.2:20348657-20348676 None:intergenic 30.0%
GGGTTTATCTGATTTCAATT+TGG + chr7.2:20349570-20349589 MS.gene41881:CDS 30.0%
GTAAATCTAATTCTGCATGT+TGG - chr7.2:20350189-20350208 None:intergenic 30.0%
TAATGACCACAAACTCATAA+TGG - chr7.2:20350262-20350281 None:intergenic 30.0%
TATGATGAAACTGTTCTTCT+AGG - chr7.2:20348472-20348491 None:intergenic 30.0%
TCAACAAAGATTTGTCTAAG+AGG - chr7.2:20348769-20348788 None:intergenic 30.0%
TTTCTTCTTTACAAAGAGCT+TGG + chr7.2:20348826-20348845 MS.gene41881:CDS 30.0%
! AACTCATTTTGTTAGGAACA+AGG + chr7.2:20348711-20348730 MS.gene41881:CDS 30.0%
! AACTCTTAGTACTAGGATTT+TGG + chr7.2:20349185-20349204 MS.gene41881:intron 30.0%
! AGTTACTCAAGCTTCATTTT+GGG + chr7.2:20350559-20350578 MS.gene41881:intron 30.0%
! GTTAATCTCAGTGTTGAAAA+GGG - chr7.2:20348629-20348648 None:intergenic 30.0%
! TGTTAATCTCAGTGTTGAAA+AGG - chr7.2:20348630-20348649 None:intergenic 30.0%
! TTGTTTGAGATGTCTGTAAA+TGG - chr7.2:20349707-20349726 None:intergenic 30.0%
!! CACAACTGATTTTGATGAAA+TGG + chr7.2:20348600-20348619 MS.gene41881:CDS 30.0%
AAATGGGATAACATTGGTAC+TGG - chr7.2:20349735-20349754 None:intergenic 35.0%
AATGGGATAACATTGGTACT+GGG - chr7.2:20349734-20349753 None:intergenic 35.0%
ACAATTTCTCAATGACTGGA+AGG + chr7.2:20349831-20349850 MS.gene41881:CDS 35.0%
ATTCAATAGCTAGTTCCGAT+TGG + chr7.2:20349946-20349965 MS.gene41881:intron 35.0%
CAAGAAAAAAGCGATCTCTT+TGG - chr7.2:20350235-20350254 None:intergenic 35.0%
CAGTAGTGAAGAACTTTAAG+AGG + chr7.2:20350724-20350743 MS.gene41881:CDS 35.0%
CATGGTCTGATATATTGCAT+GGG + chr7.2:20349303-20349322 MS.gene41881:intron 35.0%
TCATATAGATGTCAGACACT+TGG - chr7.2:20350063-20350082 None:intergenic 35.0%
TCATGGTCTGATATATTGCA+TGG + chr7.2:20349302-20349321 MS.gene41881:intron 35.0%
TCTTTGTTGAGTTTCTTGAG+AGG + chr7.2:20348779-20348798 MS.gene41881:CDS 35.0%
TGACATGCATGTCATAATTG+AGG + chr7.2:20350407-20350426 MS.gene41881:CDS 35.0%
TGATTGCAACTCTTAGTACT+AGG + chr7.2:20349178-20349197 MS.gene41881:intron 35.0%
TGTCAAAAGGGTTTCTTTGA+TGG - chr7.2:20348569-20348588 None:intergenic 35.0%
TGTCTGAGAAAATTGGATAC+TGG + chr7.2:20349671-20349690 MS.gene41881:CDS 35.0%
TGTCTTCCATTATGAGTTTG+TGG + chr7.2:20350253-20350272 MS.gene41881:intron 35.0%
TGTTAGGAACAAGGAGTTTA+AGG + chr7.2:20348720-20348739 MS.gene41881:CDS 35.0%
TTCCAGTCATTGAGAAATTG+TGG - chr7.2:20349832-20349851 None:intergenic 35.0%
TTCTTTACAAAGAGCTTGGA+AGG + chr7.2:20348830-20348849 MS.gene41881:CDS 35.0%
! AACCAGAAGATTCTTGCTAT+TGG + chr7.2:20350684-20350703 MS.gene41881:CDS 35.0%
! CAGTTACTCAAGCTTCATTT+TGG + chr7.2:20350558-20350577 MS.gene41881:intron 35.0%
! CTAGGAATGTTGCTGAATTT+TGG - chr7.2:20348454-20348473 None:intergenic 35.0%
! TATAGACAAGTAAAGGCACA+AGG - chr7.2:20349419-20349438 None:intergenic 35.0%
! TTCAATTTGGCATTGGACTT+GGG + chr7.2:20349583-20349602 MS.gene41881:CDS 35.0%
! TTTCAATTTGGCATTGGACT+TGG + chr7.2:20349582-20349601 MS.gene41881:CDS 35.0%
!! GTAGAATCTTGGTGTCAAAA+GGG - chr7.2:20348581-20348600 None:intergenic 35.0%
!! TGTAGAATCTTGGTGTCAAA+AGG - chr7.2:20348582-20348601 None:intergenic 35.0%
!!! GTTTTGTTTGGTTTCTTGCT+TGG - chr7.2:20348544-20348563 None:intergenic 35.0%
!!! TCTTTGATGGCAGTTTTGTT+TGG - chr7.2:20348556-20348575 None:intergenic 35.0%
!!! TTGCTTGGTTTTGTTGATGT+TGG - chr7.2:20348529-20348548 None:intergenic 35.0%
AAAAAAGCGATCTCTTTGGC+TGG - chr7.2:20350231-20350250 None:intergenic 40.0%
AGCCACAATTTCTCAATGAC+TGG + chr7.2:20349827-20349846 MS.gene41881:CDS 40.0%
AGTTTAAGCGAAAGTTGGAC+CGG + chr7.2:20350649-20350668 MS.gene41881:CDS 40.0%
ATGGGATAACATTGGTACTG+GGG - chr7.2:20349733-20349752 None:intergenic 40.0%
ATTGAGAATCATGCAACGCA+TGG + chr7.2:20349447-20349466 MS.gene41881:intron 40.0%
CAACGCACAGATTTCTATGA+AGG + chr7.2:20350360-20350379 MS.gene41881:CDS 40.0%
CCAACTTTCGCTTAAACTCT+GGG - chr7.2:20350647-20350666 None:intergenic 40.0%
CTATATGACACTGACATGTG+TGG + chr7.2:20350075-20350094 MS.gene41881:intron 40.0%
CTGATGAAACCAATTGAGTC+AGG + chr7.2:20350792-20350811 MS.gene41881:CDS 40.0%
CTTCATAGAAATCTGTGCGT+TGG - chr7.2:20350362-20350381 None:intergenic 40.0%
GAAGCTGCTGATAAACTTGA+TGG + chr7.2:20348742-20348761 MS.gene41881:CDS 40.0%
GGAAAATCCTTGCAGTTGTT+CGG - chr7.2:20350602-20350621 None:intergenic 40.0%
TAGATTTCCCCGAGTTTGAA+CGG + chr7.2:20350820-20350839 MS.gene41881:CDS 40.0%
TATGTAACTCAGGCACCAAT+CGG - chr7.2:20349964-20349983 None:intergenic 40.0%
TCCAACTTTCGCTTAAACTC+TGG - chr7.2:20350648-20350667 None:intergenic 40.0%
TCGATGTGCATTCTCAGTTA+AGG - chr7.2:20349999-20350018 None:intergenic 40.0%
TCTACAGATCCTGACTCAAT+TGG - chr7.2:20350804-20350823 None:intergenic 40.0%
TCTCAACATCAAGTACAGCT+GGG - chr7.2:20350623-20350642 None:intergenic 40.0%
TCTTGTACTGCTGAATTCTC+TGG + chr7.2:20348802-20348821 MS.gene41881:CDS 40.0%
TGGAGTAGCAGACATTCTTA+TGG - chr7.2:20348497-20348516 None:intergenic 40.0%
TTAACTGAGAATGCACATCG+AGG + chr7.2:20349998-20350017 MS.gene41881:intron 40.0%
TTCTCAACATCAAGTACAGC+TGG - chr7.2:20350624-20350643 None:intergenic 40.0%
TTGAGAATCATGCAACGCAT+GGG + chr7.2:20349448-20349467 MS.gene41881:intron 40.0%
TTTACAAAGAGCTTGGAAGG+AGG + chr7.2:20348833-20348852 MS.gene41881:CDS 40.0%
! AGATTTTCTCTCTGATGTCC+AGG + chr7.2:20349362-20349381 MS.gene41881:CDS 40.0%
! GATTTTCTCTCTGATGTCCA+GGG + chr7.2:20349363-20349382 MS.gene41881:CDS 40.0%
! TGAGTTTGAAGCTTTGCTTC+AGG + chr7.2:20348666-20348685 MS.gene41881:CDS 40.0%
!! AGGGTTATTTTGCAATTGCC+AGG + chr7.2:20349012-20349031 MS.gene41881:intron 40.0%
!! GGGTTATTTTGCAATTGCCA+GGG + chr7.2:20349013-20349032 MS.gene41881:intron 40.0%
!! TGTGTCTGTGTTGTTTGTGT+CGG + chr7.2:20350140-20350159 MS.gene41881:intron 40.0%
AGAAAATCTCAGCCACCACA+GGG - chr7.2:20349351-20349370 None:intergenic 45.0%
AGACAAACCGAACAACTGCA+AGG + chr7.2:20350592-20350611 MS.gene41881:intron 45.0%
AGATTTCCCCGAGTTTGAAC+GGG + chr7.2:20350821-20350840 MS.gene41881:CDS 45.0%
ATGCCTTCAACCTGAAGTGT+CGG - chr7.2:20350039-20350058 None:intergenic 45.0%
CCCAGAGTTTAAGCGAAAGT+TGG + chr7.2:20350644-20350663 MS.gene41881:CDS 45.0%
CGCCAATAGCAAGAATCTTC+TGG - chr7.2:20350689-20350708 None:intergenic 45.0%
GATGTTGTCAATTCAGTCCC+TGG - chr7.2:20349061-20349080 None:intergenic 45.0%
GGACTTGGGATTCTTGACAA+AGG + chr7.2:20349597-20349616 MS.gene41881:CDS 45.0%
GTCTCGCTTCTTCTGTCTAT+CGG + chr7.2:20349864-20349883 MS.gene41881:CDS 45.0%
TCTCTTTGGCTGGCATACTA+AGG - chr7.2:20350221-20350240 None:intergenic 45.0%
TGAGAATCATGCAACGCATG+GGG + chr7.2:20349449-20349468 MS.gene41881:intron 45.0%
TGGCATACTAAGGAATGCCA+AGG - chr7.2:20350211-20350230 None:intergenic 45.0%
TGGGATTCTTGACAAAGGCT+AGG + chr7.2:20349602-20349621 MS.gene41881:CDS 45.0%
TTGGAAGGAGGCTTAAGGTT+TGG + chr7.2:20348845-20348864 MS.gene41881:intron 45.0%
! TCTGGTTTATCACCACCATC+CGG - chr7.2:20350671-20350690 None:intergenic 45.0%
!! GTTGATGTTGGTGTTGCTGT+TGG - chr7.2:20348517-20348536 None:intergenic 45.0%
AGAGCTTGGAAGGAGGCTTA+AGG + chr7.2:20348840-20348859 MS.gene41881:CDS 50.0%
ATGACTGGAAGGCGAAGTTG+TGG + chr7.2:20349842-20349861 MS.gene41881:CDS 50.0%
ATGGCAGAAAACCAACCCTG+TGG + chr7.2:20349333-20349352 MS.gene41881:intron 50.0%
ATTTCCCCGAGTTTGAACGG+GGG + chr7.2:20350823-20350842 MS.gene41881:CDS 50.0%
CTCCATGCCTGTTCTCATCT+TGG - chr7.2:20349780-20349799 None:intergenic 50.0%
GAGAAAATCTCAGCCACCAC+AGG - chr7.2:20349352-20349371 None:intergenic 50.0%
GATTTCCCCGAGTTTGAACG+GGG + chr7.2:20350822-20350841 MS.gene41881:CDS 50.0%
TAAGCGAAAGTTGGACCGGA+TGG + chr7.2:20350653-20350672 MS.gene41881:CDS 50.0%
TGATGTCCAGGGATGAAGCT+AGG + chr7.2:20349374-20349393 MS.gene41881:CDS 50.0%
TGCCAAGATGAGAACAGGCA+TGG + chr7.2:20349775-20349794 MS.gene41881:CDS 50.0%
! ACTGGTGCCAAGATGAGAAC+AGG + chr7.2:20349770-20349789 MS.gene41881:CDS 50.0%
!! CTATGTAGCACCGACACTTC+AGG + chr7.2:20350026-20350045 MS.gene41881:intron 50.0%
AATCTCAGCCACCACAGGGT+TGG - chr7.2:20349347-20349366 None:intergenic 55.0%
ACAAGCCCCCGTTCAAACTC+GGG - chr7.2:20350831-20350850 None:intergenic 55.0%
AGCCAAGAGCTCAGACACCA+GGG - chr7.2:20350766-20350785 None:intergenic 55.0%
AGGGATGAAGCTAGGCATGC+AGG + chr7.2:20349382-20349401 MS.gene41881:CDS 55.0%
CACAAGCCCCCGTTCAAACT+CGG - chr7.2:20350832-20350851 None:intergenic 55.0%
GAAGCTAGGCATGCAGGGTA+AGG + chr7.2:20349388-20349407 MS.gene41881:intron 55.0%
GCAGAAAACCAACCCTGTGG+TGG + chr7.2:20349336-20349355 MS.gene41881:intron 55.0%
GGGATGAAGCTAGGCATGCA+GGG + chr7.2:20349383-20349402 MS.gene41881:CDS 55.0%
TGCATGCCTAGCTTCATCCC+TGG - chr7.2:20349383-20349402 None:intergenic 55.0%
! GATTCCACTGATTGCTGCCC+TGG + chr7.2:20350746-20350765 MS.gene41881:CDS 55.0%
!! GCACCGACACTTCAGGTTGA+AGG + chr7.2:20350033-20350052 MS.gene41881:intron 55.0%
CAAGCCCCCGTTCAAACTCG+GGG - chr7.2:20350830-20350849 None:intergenic 60.0%
CAGCCAAGAGCTCAGACACC+AGG - chr7.2:20350767-20350786 None:intergenic 60.0%
GACACCAGGGCAGCAATCAG+TGG - chr7.2:20350753-20350772 None:intergenic 60.0%
GCGAAAGTTGGACCGGATGG+TGG + chr7.2:20350656-20350675 MS.gene41881:CDS 60.0%
TGCCCTGGTGTCTGAGCTCT+TGG + chr7.2:20350761-20350780 MS.gene41881:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 20348406 20350857 20348406 ID=MS.gene41881
chr7.2 mRNA 20348406 20350857 20348406 ID=MS.gene41881.t1;Parent=MS.gene41881
chr7.2 exon 20348406 20348861 20348406 ID=MS.gene41881.t1.exon1;Parent=MS.gene41881.t1
chr7.2 CDS 20348406 20348861 20348406 ID=cds.MS.gene41881.t1;Parent=MS.gene41881.t1
chr7.2 exon 20349340 20349404 20349340 ID=MS.gene41881.t1.exon2;Parent=MS.gene41881.t1
chr7.2 CDS 20349340 20349404 20349340 ID=cds.MS.gene41881.t1;Parent=MS.gene41881.t1
chr7.2 exon 20349558 20349885 20349558 ID=MS.gene41881.t1.exon3;Parent=MS.gene41881.t1
chr7.2 CDS 20349558 20349885 20349558 ID=cds.MS.gene41881.t1;Parent=MS.gene41881.t1
chr7.2 exon 20350330 20350428 20350330 ID=MS.gene41881.t1.exon4;Parent=MS.gene41881.t1
chr7.2 CDS 20350330 20350428 20350330 ID=cds.MS.gene41881.t1;Parent=MS.gene41881.t1
chr7.2 exon 20350594 20350857 20350594 ID=MS.gene41881.t1.exon5;Parent=MS.gene41881.t1
chr7.2 CDS 20350594 20350857 20350594 ID=cds.MS.gene41881.t1;Parent=MS.gene41881.t1
Gene Sequence

>MS.gene41881

ATGGCAGCAGAAATGGCTCTTGTGAAACCAATTTCAAAATTCACACCAAAATTCAGCAACATTCCTAGAAGAACAGTTTCATCATATTCCATAAGAATGTCTGCTACTCCAACAGCAACACCAACATCAACAAAACCAAGCAAGAAACCAAACAAAACTGCCATCAAAGAAACCCTTTTGACACCAAGATTCTACACAACTGATTTTGATGAAATGGAGACCCTTTTCAACACTGAGATTAACAAGAACCTTAATGAAGATGAGTTTGAAGCTTTGCTTCAGGAATTCAAAACTGATTACAATCAAACTCATTTTGTTAGGAACAAGGAGTTTAAGGAAGCTGCTGATAAACTTGATGGCCCTCTTAGACAAATCTTTGTTGAGTTTCTTGAGAGGTCTTGTACTGCTGAATTCTCTGGTTTTCTTCTTTACAAAGAGCTTGGAAGGAGGCTTAAGGTTTGGTTGCTTTCTTTGTTTCTTTATAAACCTTATTCAACATTCAATTTAGCATAATTGATGATGAGTATATCATAAATTTAGCAACTTGGTTCATGAAGCTTATGAATTTTGAAATAGGACTAATATGATTGTAAATTTGCAATTTCAAGGGTTATTTTGCAATTGCCAGGGTTATTTTGAAATATTAATAATTCCAGGGACTGAATTGACAACATCATACAATTTTAATGAAAAACAGTTTATTGAACTTGTTTTTTGCTCTGAAAAGTATAATTATGACATGCAAAGTAAAAAATCATTATTTAGACAACTTTGATTGCAACTCTTAGTACTAGGATTTTGGTTTTATGACATTTTGGTACTTAAATGTAATTTTGCTACATTTAATGTCTTATTAGATGCTATTGTTCTTTATACACTTTTTTCTTGTTTTCTATTCATGGTCTGATATATTGCATGGGATTTGATATGGCAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCTAGGCATGCAGGGTAAGGAAACACCTTGTGCCTTTACTTGTCTATATGTCTAGTATTGAGAATCATGCAACGCATGGGGAGAAATCGTTAAAAGAATATACATTAGTTACGGTTTACAATTTGTTGCGTTCAGTTATTGAACTTGTTCTTTTGATTTATATGCAGGTTTTTGAATAAGGGTTTATCTGATTTCAATTTGGCATTGGACTTGGGATTCTTGACAAAGGCTAGGAAGTACACATTTTTCAAGCCCAAATTTATTTTCTATGCTACATATTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATTTACAGACATCTCAAACAAAATCCCCAGTACCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGGCATGGAGATTTCTTCTCTGCTTTGATGAAAGCACAGCCACAATTTCTCAATGACTGGAAGGCGAAGTTGTGGTCTCGCTTCTTCTGTCTATCGGTATCTTTTCTTTCTTTTGCACACGCATTTTTGCTCTTCCTTTAAGTTTCTTAAGTTGAAATTCAATAGCTAGTTCCGATTGGTGCCTGAGTTACATAATACTTAACAAACCTTAACTGAGAATGCACATCGAGGATAAGCTATGTAGCACCGACACTTCAGGTTGAAGGCATACCAAGTGTCTGACATCTATATGACACTGACATGTGTGGTTACATTCAATCACTTCTATTTTCTTAAATTATTACTTGTTCTGTGTCTGTGTTGTTTGTGTCGGTGCTTCATAGATGACAAGTATATCCAACATGCAGAATTAGATTTACCTTGGCATTCCTTAGTATGCCAGCCAAAGAGATCGCTTTTTTCTTGTCTTCCATTATGAGTTTGTGGTCATTATATTTTATTAGCCCTACTTAAAACATAGTTATCAAATTTGTGTTGCAGGTTTATGTCACTATGTATCTGAATGATTGCCAACGCACAGATTTCTATGAAGGAATTGGACTTAACACAAAAGAGTTTGACATGCATGTCATAATTGAGGTTAGTTTGTGTTTGCATATTCGCCATAATCTCTGTCAAATTAATGGAGCTTTGAGTTACCGTTATTAACACTTATGATAAGTGAGAGTTGATTAACTAAGAATAAAGGTTGAACTCATAAATCACAAGCAGTTACTCAAGCTTCATTTTGGGTTGTTTTTGCAGACAAACCGAACAACTGCAAGGATTTTCCCAGCTGTACTTGATGTTGAGAACCCAGAGTTTAAGCGAAAGTTGGACCGGATGGTGGTGATAAACCAGAAGATTCTTGCTATTGGCGAGACTGATGACAATTCAGTAGTGAAGAACTTTAAGAGGATTCCACTGATTGCTGCCCTGGTGTCTGAGCTCTTGGCTGCGTATCTGATGAAACCAATTGAGTCAGGATCTGTAGATTTCCCCGAGTTTGAACGGGGGCTTGTGTACTGA

Protein sequence

>MS.gene41881.t1

MAAEMALVKPISKFTPKFSNIPRRTVSSYSIRMSATPTATPTSTKPSKKPNKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNEDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKQNPQYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKILAIGETDDNSVVKNFKRIPLIAALVSELLAAYLMKPIESGSVDFPEFERGLVY