AlfalfaGEDB | MS.gene97395

M. sativa cultivar XinJiangDaYe / MS.gene97395

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97395.t1	KEH33020.1	92.2	141	10	1	14	154	3	142	1.20E-65	259.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97395.t1	A0A072V4C2	92.2	141	10	1	14	154	3	142	8.9e-66	259.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene97395	0.860029	2.75E-63	-1.69E-46
MS.gene049173	MS.gene97395	0.851854	6.77E-61	-1.69E-46
MS.gene049217	MS.gene97395	0.865962	4.03E-65	-1.69E-46
MS.gene049222	MS.gene97395	0.894793	1.77E-75	-1.69E-46
MS.gene049232	MS.gene97395	0.811069	8.42E-51	-1.69E-46
MS.gene049285	MS.gene97395	0.899705	1.52E-77	-1.69E-46
MS.gene049320	MS.gene97395	0.881567	2.16E-70	-1.69E-46
MS.gene049609	MS.gene97395	0.814572	1.44E-51	-1.69E-46
MS.gene049633	MS.gene97395	0.826429	2.73E-54	-1.69E-46
MS.gene05010	MS.gene97395	0.829481	5.02E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97395.t1	MTR_3g015440	90.909	143	12	1	12	154	1	142	5.84e-92	267
MS.gene97395.t1	MTR_3g015440	91.549	142	11	1	13	154	2	142	8.29e-92	267

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97395.t1	AT3G17670	48.855	131	57	2	33	154	6	135	3.30e-35	122
MS.gene97395.t1	AT3G17670	48.855	131	57	2	33	154	6	135	4.48e-35	123

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Find 62 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGATCCTTGTTTGCGGC+AGG	0.482679	3.1:+10102476	None:intergenic
AACCGTGCCTGCCGCAAACA+AGG	0.534436	3.1:-10102483	MS.gene97395:CDS
AACGTCTCTGTAAAGTCGTC+CGG	0.511697	3.1:-10102417	MS.gene97395:CDS
AAGAGACTGTGGGATTGAAT+TGG	0.451131	3.1:+10102615	None:intergenic
AATTGGCGTGGATGCGGTTA+CGG	0.442355	3.1:+10102632	None:intergenic
ACAGCTTACAAAGAGACTGT+GGG	0.668910	3.1:+10102605	None:intergenic
ACCATGGTAAGTCTGTTTGG+TGG	0.604006	3.1:-10102300	MS.gene97395:CDS
ACCGCACTTACCCAAGCAAC+CGG	0.465811	3.1:+10102398	None:intergenic
ACCTCATCATCCGCTATTGC+GGG	0.397200	3.1:-10102344	MS.gene97395:CDS
ACTGTGGGATTGAATTGGCG+TGG	0.696617	3.1:+10102620	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAGAAAAATTTCGCTG+AGG	-	chr3.1:10102604-10102623	MS.gene97395:CDS	35.0%
AAGAGACTGTGGGATTGAAT+TGG	+	chr3.1:10102215-10102234	None:intergenic	40.0%
ACAGCTTACAAAGAGACTGT+GGG	+	chr3.1:10102225-10102244	None:intergenic	40.0%
AGCAGAAGCCCAAAGAAATA+CGG	-	chr3.1:10102312-10102331	MS.gene97395:CDS	40.0%
CTCTTTGTAAGCTGTCATGT+GGG	-	chr3.1:10102230-10102249	MS.gene97395:CDS	40.0%
TCTCTTTGTAAGCTGTCATG+TGG	-	chr3.1:10102229-10102248	MS.gene97395:CDS	40.0%
TCTTTGTAAGCTGTCATGTG+GGG	-	chr3.1:10102231-10102250	MS.gene97395:CDS	40.0%
TGGTGGAGGAGATAATAGTT+TGG	-	chr3.1:10102544-10102563	MS.gene97395:CDS	40.0%
AACGTCTCTGTAAAGTCGTC+CGG	-	chr3.1:10102410-10102429	MS.gene97395:CDS	45.0%
ACCATGGTAAGTCTGTTTGG+TGG	-	chr3.1:10102527-10102546	MS.gene97395:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	10102185	10102664	10102185	ID=MS.gene97395
chr3.1	mRNA	10102185	10102664	10102185	ID=MS.gene97395.t1;Parent=MS.gene97395
chr3.1	exon	10102185	10102664	10102185	ID=MS.gene97395.t1.exon1;Parent=MS.gene97395.t1
chr3.1	CDS	10102185	10102664	10102185	ID=cds.MS.gene97395.t1;Parent=MS.gene97395.t1

Gene Sequence

>MS.gene97395

ATGAATCCCACCGTAACCGCATCCACGCCAATTCAATCCCACAGTCTCTTTGTAAGCTGTCATGTGGGGACATCCCCATCACCCAAACAAAGCTGGCTTCCTTCCTGCACCACCAAAGCACAGCAGCAGCAGAAGCCCAAAGAAATACGGGTGTGCACCAACCGTGCCTGCCGCAAACAAGGATCCTTTCAAACTCTAGAAACTCTCTCTGGTATCGCTCCTCCAAACGTCTCTGTAAAGTCGTCCGGTTGCTTGGGTAAGTGCGGTGCTGGTCCCAACCTGGTGGTCCTTCCTGATTACCTCATCATCCGCTATTGCGGGACGGCTGCTCGTTGTTTGGAGACCATGGTAAGTCTGTTTGGTGGAGGAGATAATAGTTTGGATGCTCTTGCTTTGAGGAAGAAGGCTGATGTTGAGTTAGAGAAGAAAAATTTCGCTGAGGCCGAGCTTTTGCTCTCGCAGGTACACATATACTTGTAA

Protein sequence

>MS.gene97395.t1

MNPTVTASTPIQSHSLFVSCHVGTSPSPKQSWLPSCTTKAQQQQKPKEIRVCTNRACRKQGSFQTLETLSGIAPPNVSVKSSGCLGKCGAGPNLVVLPDYLIIRYCGTAARCLETMVSLFGGGDNSLDALALRKKADVELEKKNFAEAELLLSQVHIYL