Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084180 | XP_003591770.1 | 95.517 | 290 | 7 | 2 | 1 | 290 | 1 | 284 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084180 | sp|Q8L440|ORRM1_ARATH | 71.564 | 211 | 54 | 2 | 79 | 289 | 167 | 371 | 9.45e-107 | 318 |
| Msa0084180 | sp|Q8L440|ORRM1_ARATH | 50.000 | 86 | 43 | 0 | 87 | 172 | 72 | 157 | 7.37e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084180 | G7I363 | 95.517 | 290 | 7 | 2 | 1 | 290 | 1 | 284 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033190 | Msa0084180 | 0.808703 | 2.718245e-50 | -8.615850e-47 |
| Msa0035510 | Msa0084180 | 0.823865 | 1.100619e-53 | -8.615850e-47 |
| Msa0035590 | Msa0084180 | 0.822722 | 2.034643e-53 | -8.615850e-47 |
| Msa0036250 | Msa0084180 | 0.808259 | 3.381980e-50 | -8.615850e-47 |
| Msa0064310 | Msa0084180 | 0.815232 | 1.027322e-51 | -8.615850e-47 |
| Msa0074860 | Msa0084180 | 0.809911 | 1.497133e-50 | -8.615850e-47 |
| Msa0075990 | Msa0084180 | 0.817656 | 2.945491e-52 | -8.615850e-47 |
| Msa0076100 | Msa0084180 | 0.822231 | 2.645689e-53 | -8.615850e-47 |
| Msa0079840 | Msa0084180 | 0.808016 | 3.810152e-50 | -8.615850e-47 |
| Msa0084180 | Msa0133390 | 0.818496 | 1.902041e-52 | -8.615850e-47 |
| Msa0084180 | Msa0138340 | 0.826701 | 2.347930e-54 | -8.615850e-47 |
| Msa0084180 | Msa0147960 | 0.828263 | 9.909208e-55 | -8.615850e-47 |
| Msa0084180 | Msa0155350 | 0.819932 | 8.956127e-53 | -8.615850e-47 |
| Msa0084180 | Msa0159240 | 0.815778 | 7.766421e-52 | -8.615850e-47 |
| Msa0084180 | Msa0164580 | 0.827901 | 1.211328e-54 | -8.615850e-47 |
| Msa0084180 | Msa0172820 | 0.824794 | 6.653622e-54 | -8.615850e-47 |
| Msa0084180 | Msa0181560 | 0.820531 | 6.530313e-53 | -8.615850e-47 |
| Msa0084180 | Msa0184800 | 0.819599 | 1.067252e-52 | -8.615850e-47 |
| Msa0084180 | Msa0184900 | 0.823314 | 1.480398e-53 | -8.615850e-47 |
| Msa0084180 | Msa0208040 | 0.801076 | 1.067701e-48 | -8.615850e-47 |
| Msa0084180 | Msa0209370 | 0.822940 | 1.810288e-53 | -8.615850e-47 |
| Msa0084180 | Msa0209590 | 0.813184 | 2.911056e-51 | -8.615850e-47 |
| Msa0084180 | Msa0315720 | 0.803779 | 2.962182e-49 | -8.615850e-47 |
| Msa0084180 | Msa0365350 | 0.810636 | 1.044749e-50 | -8.615850e-47 |
| Msa0084180 | Msa0383110 | 0.811866 | 5.650790e-51 | -8.615850e-47 |
| Msa0084180 | Msa0385850 | 0.811702 | 6.133988e-51 | -8.615850e-47 |
| Msa0084180 | Msa0389570 | 0.832008 | 1.207429e-55 | -8.615850e-47 |
| Msa0084180 | Msa0418790 | 0.809464 | 1.868064e-50 | -8.615850e-47 |
| Msa0084180 | Msa0424930 | 0.809837 | 1.553233e-50 | -8.615850e-47 |
| Msa0084180 | Msa0498250 | 0.824143 | 9.468480e-54 | -8.615850e-47 |
| Msa0084180 | Msa0520480 | 0.802991 | 4.313122e-49 | -8.615850e-47 |
| Msa0084180 | Msa0524570 | 0.808769 | 2.632029e-50 | -8.615850e-47 |
| Msa0084180 | Msa0527210 | 0.822176 | 2.725172e-53 | -8.615850e-47 |
| Msa0084180 | Msa0531270 | 0.809679 | 1.679201e-50 | -8.615850e-47 |
| Msa0084180 | Msa0554700 | 0.803237 | 3.836113e-49 | -8.615850e-47 |
| Msa0084180 | Msa0568300 | 0.818520 | 1.878397e-52 | -8.615850e-47 |
| Msa0084180 | Msa0576550 | 0.815858 | 7.451541e-52 | -8.615850e-47 |
| Msa0084180 | Msa0585720 | 0.812440 | 4.234874e-51 | -8.615850e-47 |
| Msa0084180 | Msa0585810 | 0.808396 | 3.161676e-50 | -8.615850e-47 |
| Msa0084180 | Msa0614060 | 0.813541 | 2.429130e-51 | -8.615850e-47 |
| Msa0084180 | Msa0625900 | 0.801507 | 8.716286e-49 | -8.615850e-47 |
| Msa0084180 | Msa0628440 | 0.814347 | 1.613668e-51 | -8.615850e-47 |
| Msa0084180 | Msa0638550 | 0.814233 | 1.709805e-51 | -8.615850e-47 |
| Msa0084180 | Msa0639530 | 0.822838 | 1.911717e-53 | -8.615850e-47 |
| Msa0084180 | Msa0646030 | 0.801332 | 9.466605e-49 | -8.615850e-47 |
| Msa0084180 | Msa0651120 | 0.805868 | 1.084187e-49 | -8.615850e-47 |
| Msa0084180 | Msa0660160 | 0.804593 | 2.005076e-49 | -8.615850e-47 |
| Msa0084180 | Msa0663580 | 0.826253 | 3.002976e-54 | -8.615850e-47 |
| Msa0084180 | Msa0663690 | 0.805421 | 1.345740e-49 | -8.615850e-47 |
| Msa0084180 | Msa0666380 | 0.801391 | 9.206022e-49 | -8.615850e-47 |
| Msa0084180 | Msa0671300 | 0.804278 | 2.332917e-49 | -8.615850e-47 |
| Msa0084180 | Msa0692710 | 0.803914 | 2.777269e-49 | -8.615850e-47 |
| Msa0084180 | Msa0695800 | 0.804521 | 2.076081e-49 | -8.615850e-47 |
| Msa0084180 | Msa0702020 | 0.817593 | 3.043382e-52 | -8.615850e-47 |
| Msa0084180 | Msa0704790 | 0.814284 | 1.666437e-51 | -8.615850e-47 |
| Msa0084180 | Msa0719330 | 0.801668 | 8.076501e-49 | -8.615850e-47 |
| Msa0084180 | Msa0879820 | 0.800115 | 1.676647e-48 | -8.615850e-47 |
| Msa0084180 | Msa0947550 | 0.803766 | 2.980073e-49 | -8.615850e-47 |
| Msa0084180 | Msa1020160 | 0.813591 | 2.369272e-51 | -8.615850e-47 |
| Msa0084180 | Msa1044050 | 0.802916 | 4.470561e-49 | -8.615850e-47 |
| Msa0084180 | Msa1056590 | 0.818125 | 2.307522e-52 | -8.615850e-47 |
| Msa0084180 | Msa1077740 | 0.828005 | 1.143502e-54 | -8.615850e-47 |
| Msa0084180 | Msa1130910 | 0.804397 | 2.202796e-49 | -8.615850e-47 |
| Msa0084180 | Msa1136770 | 0.804803 | 1.812416e-49 | -8.615850e-47 |
| Msa0084180 | Msa1156120 | 0.800055 | 1.724774e-48 | -8.615850e-47 |
| Msa0084180 | Msa1165330 | 0.803433 | 3.493622e-49 | -8.615850e-47 |
| Msa0084180 | Msa1190510 | 0.847079 | 1.450749e-59 | -8.615850e-47 |
| Msa0084180 | Msa1223520 | 0.807946 | 3.941689e-50 | -8.615850e-47 |
| Msa0084180 | Msa1267390 | 0.820450 | 6.814488e-53 | -8.615850e-47 |
| Msa0084180 | Msa1269370 | 0.820516 | 6.582688e-53 | -8.615850e-47 |
| Msa0084180 | Msa1286470 | 0.802378 | 5.771071e-49 | -8.615850e-47 |
| Msa0084180 | Msa1327690 | 0.804746 | 1.862944e-49 | -8.615850e-47 |
| Msa0084180 | Msa1339520 | 0.836027 | 1.190320e-56 | -8.615850e-47 |
| Msa0084180 | Msa1371540 | 0.821221 | 4.530573e-53 | -8.615850e-47 |
| Msa0084180 | Msa1403840 | 0.813773 | 2.160365e-51 | -8.615850e-47 |
| Msa0084180 | Msa1411930 | 0.817449 | 3.278756e-52 | -8.615850e-47 |
| Msa0084180 | Msa1452800 | 0.813989 | 1.935360e-51 | -8.615850e-47 |
| Msa0084180 | Msa1459680 | 0.808589 | 2.875889e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084180 | MtrunA17_Chr1g0198431 | 95.517 | 290 | 7 | 2 | 1 | 290 | 1 | 284 | 0.0 | 570 |
| Msa0084180 | MtrunA17_Chr1g0166671 | 44.915 | 118 | 64 | 1 | 56 | 172 | 52 | 169 | 3.24e-30 | 113 |
| Msa0084180 | MtrunA17_Chr1g0187251 | 33.793 | 145 | 96 | 0 | 55 | 199 | 70 | 214 | 2.32e-25 | 100 |
| Msa0084180 | MtrunA17_Chr7g0266751 | 51.220 | 82 | 40 | 0 | 199 | 280 | 33 | 114 | 1.52e-22 | 90.9 |
| Msa0084180 | MtrunA17_Chr6g0481071 | 48.052 | 77 | 40 | 0 | 199 | 275 | 96 | 172 | 5.91e-22 | 90.5 |
| Msa0084180 | MtrunA17_Chr7g0263001 | 47.727 | 88 | 46 | 0 | 193 | 280 | 30 | 117 | 2.12e-21 | 87.8 |
| Msa0084180 | MtrunA17_Chr4g0042161 | 45.000 | 80 | 44 | 0 | 200 | 279 | 53 | 132 | 3.97e-20 | 84.7 |
| Msa0084180 | MtrunA17_Chr4g0042151 | 40.964 | 83 | 46 | 1 | 200 | 282 | 46 | 125 | 7.32e-18 | 79.7 |
| Msa0084180 | MtrunA17_Chr4g0031091 | 46.053 | 76 | 41 | 0 | 199 | 274 | 34 | 109 | 3.22e-17 | 75.9 |
| Msa0084180 | MtrunA17_Chr4g0050781 | 44.156 | 77 | 43 | 0 | 199 | 275 | 8 | 84 | 1.51e-16 | 76.6 |
| Msa0084180 | MtrunA17_Chr2g0327921 | 44.156 | 77 | 43 | 0 | 199 | 275 | 8 | 84 | 1.52e-16 | 73.2 |
| Msa0084180 | MtrunA17_Chr3g0121631 | 38.947 | 95 | 57 | 1 | 180 | 274 | 18 | 111 | 4.04e-16 | 73.9 |
| Msa0084180 | MtrunA17_Chr7g0219021 | 37.895 | 95 | 51 | 1 | 194 | 288 | 36 | 122 | 4.37e-16 | 76.3 |
| Msa0084180 | MtrunA17_Chr2g0278661 | 42.857 | 77 | 44 | 0 | 199 | 275 | 8 | 84 | 7.02e-16 | 75.5 |
| Msa0084180 | MtrunA17_Chr4g0061451 | 36.471 | 85 | 54 | 0 | 194 | 278 | 38 | 122 | 8.04e-16 | 75.9 |
| Msa0084180 | MtrunA17_Chr2g0280611 | 28.342 | 187 | 130 | 2 | 1 | 184 | 1 | 186 | 9.09e-16 | 75.1 |
| Msa0084180 | MtrunA17_Chr3g0088511 | 36.559 | 93 | 56 | 1 | 197 | 289 | 31 | 120 | 2.45e-15 | 71.2 |
| Msa0084180 | MtrunA17_Chr4g0065741 | 40.426 | 94 | 45 | 1 | 182 | 275 | 66 | 148 | 2.58e-15 | 72.0 |
| Msa0084180 | MtrunA17_Chr3g0119311 | 40.000 | 80 | 48 | 0 | 199 | 278 | 37 | 116 | 3.14e-15 | 71.2 |
| Msa0084180 | MtrunA17_Chr7g0219031 | 33.684 | 95 | 61 | 1 | 176 | 270 | 20 | 112 | 1.18e-14 | 68.9 |
| Msa0084180 | MtrunA17_Chr3g0086861 | 37.209 | 86 | 54 | 0 | 193 | 278 | 39 | 124 | 1.66e-14 | 73.2 |
| Msa0084180 | MtrunA17_Chr4g0067641 | 30.894 | 123 | 81 | 3 | 54 | 174 | 58 | 178 | 3.62e-13 | 68.2 |
| Msa0084180 | MtrunA17_Chr6g0467031 | 34.737 | 95 | 61 | 1 | 84 | 177 | 74 | 168 | 4.00e-13 | 66.6 |
| Msa0084180 | MtrunA17_Chr4g0045921 | 48.052 | 77 | 39 | 1 | 198 | 274 | 76 | 151 | 7.41e-13 | 68.2 |
| Msa0084180 | MtrunA17_Chr4g0035031 | 38.462 | 78 | 48 | 0 | 199 | 276 | 9 | 86 | 1.63e-12 | 65.1 |
| Msa0084180 | MtrunA17_Chr2g0316311 | 32.710 | 107 | 71 | 1 | 86 | 192 | 96 | 201 | 4.83e-12 | 65.9 |
| Msa0084180 | MtrunA17_Chr5g0430471 | 34.737 | 95 | 62 | 0 | 181 | 275 | 22 | 116 | 9.35e-12 | 62.0 |
| Msa0084180 | MtrunA17_Chr7g0276531 | 39.024 | 82 | 49 | 1 | 185 | 266 | 5 | 85 | 1.46e-11 | 63.5 |
| Msa0084180 | MtrunA17_Chr1g0148081 | 27.891 | 147 | 105 | 1 | 46 | 192 | 48 | 193 | 1.93e-11 | 63.5 |
| Msa0084180 | MtrunA17_Chr4g0035001 | 35.065 | 77 | 50 | 0 | 199 | 275 | 7 | 83 | 2.44e-11 | 60.8 |
| Msa0084180 | MtrunA17_Chr4g0035051 | 34.177 | 79 | 52 | 0 | 199 | 277 | 9 | 87 | 2.72e-11 | 59.7 |
| Msa0084180 | MtrunA17_Chr8g0346011 | 38.298 | 94 | 54 | 1 | 199 | 288 | 38 | 131 | 3.12e-11 | 62.8 |
| Msa0084180 | MtrunA17_Chr7g0260761 | 36.047 | 86 | 55 | 0 | 199 | 284 | 278 | 363 | 4.63e-11 | 63.2 |
| Msa0084180 | MtrunA17_Chr3g0144311 | 37.895 | 95 | 55 | 2 | 199 | 290 | 30 | 123 | 5.59e-11 | 62.0 |
| Msa0084180 | MtrunA17_Chr7g0259671 | 39.474 | 76 | 46 | 0 | 199 | 274 | 280 | 355 | 7.26e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084180 | AT3G20930.1 | 71.564 | 211 | 54 | 2 | 79 | 289 | 167 | 371 | 9.61e-108 | 318 |
| Msa0084180 | AT3G20930.1 | 50.000 | 86 | 43 | 0 | 87 | 172 | 72 | 157 | 7.49e-27 | 108 |
| Msa0084180 | AT3G20930.2 | 69.907 | 216 | 54 | 3 | 79 | 289 | 167 | 376 | 1.94e-105 | 312 |
| Msa0084180 | AT3G20930.2 | 50.000 | 86 | 43 | 0 | 87 | 172 | 72 | 157 | 7.09e-27 | 108 |
| Msa0084180 | AT1G32580.1 | 43.478 | 115 | 65 | 0 | 58 | 172 | 66 | 180 | 1.17e-28 | 110 |
| Msa0084180 | AT2G35240.1 | 39.098 | 133 | 81 | 0 | 56 | 188 | 67 | 199 | 1.46e-27 | 107 |
| Msa0084180 | AT1G73530.1 | 47.778 | 90 | 44 | 1 | 199 | 288 | 78 | 164 | 2.17e-21 | 89.4 |
| Msa0084180 | AT4G13850.4 | 40.385 | 104 | 61 | 1 | 175 | 278 | 13 | 115 | 2.49e-19 | 82.4 |
| Msa0084180 | AT4G13850.3 | 40.741 | 108 | 61 | 2 | 175 | 280 | 13 | 119 | 2.76e-19 | 82.8 |
| Msa0084180 | AT4G13850.2 | 40.741 | 108 | 61 | 2 | 175 | 280 | 13 | 119 | 3.44e-19 | 82.8 |
| Msa0084180 | AT4G13850.1 | 40.741 | 108 | 61 | 2 | 175 | 280 | 13 | 119 | 3.89e-19 | 82.8 |
| Msa0084180 | AT5G06210.1 | 41.905 | 105 | 56 | 3 | 174 | 275 | 9 | 111 | 1.22e-18 | 80.9 |
| Msa0084180 | AT3G23830.2 | 43.023 | 86 | 47 | 1 | 197 | 280 | 34 | 119 | 1.74e-18 | 80.5 |
| Msa0084180 | AT3G23830.1 | 43.023 | 86 | 47 | 1 | 197 | 280 | 34 | 119 | 1.74e-18 | 80.5 |
| Msa0084180 | AT2G37510.1 | 46.250 | 80 | 43 | 0 | 193 | 272 | 29 | 108 | 1.88e-18 | 80.5 |
| Msa0084180 | AT4G20030.1 | 48.052 | 77 | 40 | 0 | 199 | 275 | 41 | 117 | 5.64e-18 | 79.3 |
| Msa0084180 | AT2G27330.1 | 40.964 | 83 | 46 | 1 | 200 | 279 | 23 | 105 | 1.57e-17 | 77.0 |
| Msa0084180 | AT3G46020.1 | 44.156 | 77 | 43 | 0 | 199 | 275 | 8 | 84 | 2.72e-17 | 76.3 |
| Msa0084180 | AT5G54580.1 | 42.105 | 76 | 44 | 0 | 200 | 275 | 58 | 133 | 4.04e-17 | 77.4 |
| Msa0084180 | AT3G26420.1 | 44.156 | 77 | 43 | 0 | 199 | 275 | 8 | 84 | 2.70e-16 | 77.0 |
| Msa0084180 | AT5G47320.1 | 37.143 | 105 | 65 | 1 | 174 | 278 | 8 | 111 | 4.29e-16 | 75.9 |
| Msa0084180 | AT1G11430.1 | 31.776 | 107 | 73 | 0 | 78 | 184 | 80 | 186 | 1.54e-15 | 74.7 |
| Msa0084180 | AT5G61030.2 | 36.250 | 80 | 51 | 0 | 195 | 274 | 37 | 116 | 3.25e-15 | 75.1 |
| Msa0084180 | AT5G61030.1 | 36.250 | 80 | 51 | 0 | 195 | 274 | 37 | 116 | 3.25e-15 | 75.1 |
| Msa0084180 | AT1G74230.1 | 40.000 | 80 | 47 | 1 | 195 | 274 | 31 | 109 | 4.94e-14 | 71.2 |
| Msa0084180 | AT4G39260.3 | 37.179 | 78 | 49 | 0 | 199 | 276 | 7 | 84 | 6.60e-14 | 66.6 |
| Msa0084180 | AT2G46780.1 | 41.000 | 100 | 52 | 2 | 195 | 287 | 19 | 118 | 1.00e-13 | 70.9 |
| Msa0084180 | AT2G46780.2 | 41.000 | 100 | 52 | 2 | 195 | 287 | 19 | 118 | 1.00e-13 | 70.9 |
| Msa0084180 | AT2G37510.2 | 35.238 | 105 | 43 | 1 | 193 | 272 | 29 | 133 | 4.39e-13 | 66.6 |
| Msa0084180 | AT4G39260.2 | 37.662 | 77 | 48 | 0 | 199 | 275 | 7 | 83 | 6.09e-13 | 65.1 |
| Msa0084180 | AT2G22090.1 | 36.842 | 95 | 59 | 1 | 195 | 289 | 101 | 194 | 6.29e-13 | 68.6 |
| Msa0084180 | AT5G59860.1 | 42.466 | 73 | 37 | 1 | 203 | 275 | 76 | 143 | 6.46e-13 | 65.9 |
| Msa0084180 | AT2G22090.2 | 36.842 | 95 | 59 | 1 | 195 | 289 | 101 | 194 | 6.61e-13 | 68.6 |
| Msa0084180 | AT3G50670.1 | 37.179 | 78 | 49 | 0 | 198 | 275 | 138 | 215 | 8.68e-13 | 68.6 |
| Msa0084180 | AT4G39260.1 | 37.662 | 77 | 48 | 0 | 199 | 275 | 7 | 83 | 1.52e-12 | 65.1 |
| Msa0084180 | AT5G59865.1 | 48.052 | 77 | 40 | 0 | 199 | 275 | 27 | 103 | 3.24e-12 | 62.8 |
| Msa0084180 | AT3G15000.1 | 37.079 | 89 | 55 | 1 | 86 | 174 | 98 | 185 | 4.33e-12 | 66.2 |
| Msa0084180 | AT3G08000.1 | 39.474 | 76 | 46 | 0 | 199 | 274 | 42 | 117 | 6.08e-12 | 62.8 |
| Msa0084180 | AT4G13860.1 | 36.000 | 75 | 48 | 0 | 199 | 273 | 4 | 78 | 7.28e-12 | 60.8 |
| Msa0084180 | AT2G19380.1 | 31.915 | 94 | 63 | 1 | 190 | 283 | 400 | 492 | 1.08e-11 | 65.5 |
| Msa0084180 | AT3G15010.1 | 36.471 | 85 | 53 | 1 | 192 | 276 | 69 | 152 | 6.04e-11 | 62.8 |
| Msa0084180 | AT3G15010.2 | 36.471 | 85 | 53 | 1 | 192 | 276 | 69 | 152 | 6.04e-11 | 62.8 |
| Msa0084180 | AT1G22910.2 | 36.667 | 90 | 53 | 1 | 199 | 284 | 14 | 103 | 6.05e-11 | 61.6 |
| Msa0084180 | AT2G21660.2 | 33.766 | 77 | 51 | 0 | 199 | 275 | 9 | 85 | 6.93e-11 | 60.1 |
| Msa0084180 | AT1G22910.1 | 36.667 | 90 | 53 | 1 | 199 | 284 | 14 | 103 | 8.84e-11 | 61.2 |
| Msa0084180 | AT2G21660.1 | 33.766 | 77 | 51 | 0 | 199 | 275 | 9 | 85 | 9.41e-11 | 60.1 |
Find 101 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCATGGAAAACCAATTT+TGG | 0.112663 | 1_2:-63484586 | Msa0084180:CDS |
| TTATTTGAAGTTGGTGAATT+TGG | 0.196836 | 1_2:+63484995 | None:intergenic |
| TACTTACTTTCCCATGATTT+TGG | 0.210808 | 1_2:+63484729 | None:intergenic |
| AGATCTATTTGCAAAATCTT+TGG | 0.212636 | 1_2:+63481750 | None:intergenic |
| TTCACAACAAAACCCAAAAT+TGG | 0.220232 | 1_2:+63484573 | None:intergenic |
| CATATGTTCAGGTAGAAATT+TGG | 0.220805 | 1_2:-63483463 | Msa0084180:intron |
| TGACTTGCTTCAGAAGAATT+TGG | 0.222835 | 1_2:+63483423 | None:intergenic |
| AAAATACTAAAATTTAATTT+TGG | 0.239857 | 1_2:-63481596 | Msa0084180:three_prime_UTR |
| AACATCTCCGGAGAATATTA+TGG | 0.243718 | 1_2:+63481968 | None:intergenic |
| GCACAGTAAATCTTTAACTA+TGG | 0.246306 | 1_2:-63481628 | Msa0084180:three_prime_UTR |
| TTGTGCGTGCAGATTATTAA+TGG | 0.253086 | 1_2:-63482764 | Msa0084180:intron |
| AGAGGGAAGGGTTTGAGATT+TGG | 0.267017 | 1_2:+63485038 | None:intergenic |
| CAATGCTTTGAATTTCCATT+AGG | 0.287884 | 1_2:+63484829 | None:intergenic |
| TATTTGAAGTTGGTGAATTT+GGG | 0.299578 | 1_2:+63484996 | None:intergenic |
| ATGTTTGTGACACAATTCTA+AGG | 0.328272 | 1_2:+63485090 | None:intergenic |
| GATCTATTTGCAAAATCTTT+GGG | 0.333253 | 1_2:+63481751 | None:intergenic |
| GCTTGGACGATGATGTTATA+AGG | 0.335303 | 1_2:-63482107 | Msa0084180:three_prime_UTR |
| TCTGTCCAACAGGCTTGTTC+TGG | 0.336939 | 1_2:-63481681 | Msa0084180:three_prime_UTR |
| AAATGTAAATGTAGGGATAT+TGG | 0.346471 | 1_2:+63481808 | None:intergenic |
| AATGCTTTGAATTTCCATTA+GGG | 0.351537 | 1_2:+63484830 | None:intergenic |
| CGCGCCGCATTTGAAGGCTT+TGG | 0.352596 | 1_2:-63483132 | Msa0084180:CDS |
| TGGTCAAAATTTGAGCATAA+TGG | 0.352734 | 1_2:+63484749 | None:intergenic |
| TGTGTATATATCATGTTTCA+TGG | 0.359894 | 1_2:-63484600 | Msa0084180:CDS |
| ATGGTCAACAATTTGAGCTT+TGG | 0.361173 | 1_2:+63484768 | None:intergenic |
| AAAAGAGGAATTACATGAAA+TGG | 0.362195 | 1_2:+63484915 | None:intergenic |
| GACACAATTCTAAGGTTTCA+TGG | 0.371212 | 1_2:+63485098 | None:intergenic |
| ATGTTGTTGTTGTTCCCTAA+TGG | 0.373679 | 1_2:-63484844 | Msa0084180:CDS |
| TTATAACCACACATGCTCTT+AGG | 0.374255 | 1_2:-63481929 | Msa0084180:three_prime_UTR |
| TCAGACTCAAAATTGTCATC+TGG | 0.388385 | 1_2:+63484395 | None:intergenic |
| GCACGACCCTTGTTGTATCT+TGG | 0.392813 | 1_2:+63482704 | None:intergenic |
| CGGTTTGTGGAATTGATGTT+TGG | 0.393172 | 1_2:+63484869 | None:intergenic |
| ACCTTACGCGCCGCATTTGA+AGG | 0.398224 | 1_2:-63483138 | Msa0084180:CDS |
| GATAGAGAAGTAACTTGGTC+AGG | 0.399152 | 1_2:+63482069 | None:intergenic |
| TTCTTATCAAGCAGATGGTC+TGG | 0.401047 | 1_2:+63482682 | None:intergenic |
| AAAGCATTGGGTTGTTAGAA+TGG | 0.404538 | 1_2:-63484815 | Msa0084180:CDS |
| CCTCTGACATCTTTATGAAA+TGG | 0.404893 | 1_2:-63481721 | Msa0084180:three_prime_UTR |
| TAATGGAAATTCAAAGCATT+GGG | 0.410201 | 1_2:-63484827 | Msa0084180:CDS |
| TGTCTTTGATTCATTCTCAA+TGG | 0.412062 | 1_2:+63485143 | None:intergenic |
| CTTGGACGATGATGTTATAA+GGG | 0.423624 | 1_2:-63482106 | Msa0084180:three_prime_UTR |
| TATGTTCAAAATGTAAATGT+AGG | 0.426220 | 1_2:+63481800 | None:intergenic |
| GATTGTGGTGCAGGTGTGCC+TGG | 0.428716 | 1_2:-63484434 | Msa0084180:intron |
| TGCTGAAATTCTAGTAAAAG+AGG | 0.428882 | 1_2:+63484900 | None:intergenic |
| TGAAGATAAGTTGAATCAAA+TGG | 0.435228 | 1_2:+63482015 | None:intergenic |
| ACATCTCCGGAGAATATTAT+GGG | 0.438627 | 1_2:+63481969 | None:intergenic |
| AAATTCTTCTGAAGCAAGTC+AGG | 0.439004 | 1_2:-63483421 | Msa0084180:CDS |
| GCCTTCAAATGCGGCGCGTA+AGG | 0.441311 | 1_2:+63483137 | None:intergenic |
| CTAATGGAAATTCAAAGCAT+TGG | 0.444153 | 1_2:-63484828 | Msa0084180:CDS |
| TTCAATAAATGCATAACCCT+TGG | 0.455487 | 1_2:+63482979 | None:intergenic |
| CGACCCTTGTTGTATCTTGG+TGG | 0.456934 | 1_2:+63482707 | None:intergenic |
| TTATAGATAAAATTTCAAAA+AGG | 0.469097 | 1_2:-63483003 | Msa0084180:CDS |
| AGGGAACAACAACAACATAT+CGG | 0.471159 | 1_2:+63484849 | None:intergenic |
| TTGCAAAATCTTTGGGCCAA+AGG | 0.474574 | 1_2:+63481758 | None:intergenic |
| GTATCTTGGTGGGGTAGTCT+TGG | 0.475114 | 1_2:+63482718 | None:intergenic |
| GACCCTTGTTGTATCTTGGT+GGG | 0.480451 | 1_2:+63482708 | None:intergenic |
| GTTGTTTGTTTGCAGTGAAA+AGG | 0.483537 | 1_2:-63484632 | Msa0084180:intron |
| TCTGAAAATAAGGATTATGA+AGG | 0.486651 | 1_2:-63484377 | Msa0084180:intron |
| CTCTTTGAGTGCTGCACTTG+CGG | 0.491061 | 1_2:+63482940 | None:intergenic |
| AACAACAACATATCGGTTTG+TGG | 0.494642 | 1_2:+63484856 | None:intergenic |
| GATAAGAAAAGAAGTCTGTA+AGG | 0.503154 | 1_2:-63482667 | Msa0084180:intron |
| ATGCTTCATTCAACAAGGCT+TGG | 0.523221 | 1_2:-63482124 | Msa0084180:three_prime_UTR |
| TATTAATGGCTGGATGATAG+TGG | 0.526032 | 1_2:-63482750 | Msa0084180:CDS |
| GGCTTTGGTGAGCTTGTTGA+AGG | 0.526097 | 1_2:-63483117 | Msa0084180:intron |
| ACACAATTCTAAGGTTTCAT+GGG | 0.541585 | 1_2:+63485099 | None:intergenic |
| TTGAGATTTGGTGAATGTAA+CGG | 0.542477 | 1_2:+63485050 | None:intergenic |
| ACCCTTGTTGTATCTTGGTG+GGG | 0.547772 | 1_2:+63482709 | None:intergenic |
| TTTGAAAGTTCAGTGTGTGC+AGG | 0.552838 | 1_2:+63481838 | None:intergenic |
| TTGGTAACAACACCAACAGC+AGG | 0.553041 | 1_2:+63484787 | None:intergenic |
| TTGAATCAAATGGAGACAGA+GGG | 0.557854 | 1_2:+63482025 | None:intergenic |
| TGCACTTGCGGCCTCCTCTG+TGG | 0.559303 | 1_2:+63482952 | None:intergenic |
| ATGTTCAAAATGTAAATGTA+GGG | 0.567495 | 1_2:+63481801 | None:intergenic |
| TCACTTCCTAAGAGCATGTG+TGG | 0.571599 | 1_2:+63481923 | None:intergenic |
| GCAGCACTCAAAGAGATGAA+TGG | 0.574975 | 1_2:-63482932 | Msa0084180:CDS |
| ATAGAGAAGTAACTTGGTCA+GGG | 0.575323 | 1_2:+63482070 | None:intergenic |
| TAGACACCCATAATATTCTC+CGG | 0.577652 | 1_2:-63481975 | Msa0084180:three_prime_UTR |
| GATTCGCCTCTAGTGATCGC+TGG | 0.579719 | 1_2:+63481883 | None:intergenic |
| GCCTACCAGAACAAGCCTGT+TGG | 0.582157 | 1_2:+63481676 | None:intergenic |
| GGCTGAACAGACAAGACACC+AGG | 0.582996 | 1_2:+63484416 | None:intergenic |
| TCCAACAGGCTTGTTCTGGT+AGG | 0.584549 | 1_2:-63481677 | Msa0084180:three_prime_UTR |
| GCGTGCAGATTATTAATGGC+TGG | 0.585212 | 1_2:-63482760 | Msa0084180:intron |
| CACGTACCAGCGATCACTAG+AGG | 0.589950 | 1_2:-63481889 | Msa0084180:three_prime_UTR |
| GAAATGATAGAGAAGTAACT+TGG | 0.590055 | 1_2:+63482064 | None:intergenic |
| TCAAATGGAGACAGAGGGGA+AGG | 0.593229 | 1_2:+63482030 | None:intergenic |
| TGCACACCCTCATGATACAC+TGG | 0.604965 | 1_2:+63481861 | None:intergenic |
| GATTGTGCACATGAGCTAGC+TGG | 0.605037 | 1_2:-63484541 | Msa0084180:intron |
| CTCACCAAAGCCTTCAAATG+CGG | 0.607563 | 1_2:+63483128 | None:intergenic |
| TTAGAATTGTGTCACAAACA+TGG | 0.617191 | 1_2:-63485088 | Msa0084180:exon |
| GTTGAATCAAATGGAGACAG+AGG | 0.631897 | 1_2:+63482024 | None:intergenic |
| CCATTTCATAAAGATGTCAG+AGG | 0.632361 | 1_2:+63481721 | None:intergenic |
| GGCGAATCCAGTGTATCATG+AGG | 0.633289 | 1_2:-63481868 | Msa0084180:three_prime_UTR |
| GTCATATCCTCAAAACCCAA+AGG | 0.634439 | 1_2:+63485181 | None:intergenic |
| TACCCCACCAAGATACAACA+AGG | 0.648898 | 1_2:-63482711 | Msa0084180:CDS |
| TATTGAATACACCACAGAGG+AGG | 0.649244 | 1_2:-63482963 | Msa0084180:CDS |
| TTGGACGATGATGTTATAAG+GGG | 0.661225 | 1_2:-63482105 | Msa0084180:three_prime_UTR |
| GCGAATCCAGTGTATCATGA+GGG | 0.667965 | 1_2:-63481867 | Msa0084180:three_prime_UTR |
| AGAATGGATAAACCTGCTGT+TGG | 0.670334 | 1_2:-63484799 | Msa0084180:CDS |
| AATGCATGCTTCATTCAACA+AGG | 0.670821 | 1_2:-63482129 | Msa0084180:three_prime_UTR |
| ACTCAAAGAGATGAATGGCA+AGG | 0.678432 | 1_2:-63482927 | Msa0084180:intron |
| TAGAGAAGTAACTTGGTCAG+GGG | 0.693220 | 1_2:+63482071 | None:intergenic |
| TGAATCAAATGGAGACAGAG+GGG | 0.733687 | 1_2:+63482026 | None:intergenic |
| ACCCCACCAAGATACAACAA+GGG | 0.762422 | 1_2:-63482710 | Msa0084180:CDS |
| ATTTATTGAATACACCACAG+AGG | 0.775447 | 1_2:-63482966 | Msa0084180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTTCTTTTTTAT+TGG | - | chr1_2:63482084-63482103 | Msa0084180:three_prime_UTR | 10.0% |
| !!! | TTTTTTCTTTCTTTTTTATT+GGG | - | chr1_2:63482085-63482104 | Msa0084180:three_prime_UTR | 10.0% |
| !! | AATATATTATAAATTTACCT+AGG | - | chr1_2:63482467-63482486 | Msa0084180:intron | 10.0% |
| !! | ATAAATATATATGTATGTAT+TGG | - | chr1_2:63482930-63482949 | Msa0084180:CDS | 10.0% |
| !! | TTATAGATAAAATTTCAAAA+AGG | - | chr1_2:63483768-63483787 | Msa0084180:intron | 10.0% |
| !! | AGATAAATAATTGAATTATA+TGG | + | chr1_2:63484236-63484255 | None:intergenic | 10.0% |
| !!! | TTATTATTTTTTTCATTTTC+CGG | - | chr1_2:63484394-63484413 | Msa0084180:CDS | 10.0% |
| !! | TGTGTTAATTTATATTTCAT+TGG | - | chr1_2:63482542-63482561 | Msa0084180:intron | 15.0% |
| !! | TGAAAAAAATAATAAACAGA+GGG | + | chr1_2:63484389-63484408 | None:intergenic | 15.0% |
| !! | ATGAAAAAAATAATAAACAG+AGG | + | chr1_2:63484390-63484409 | None:intergenic | 15.0% |
| !!! | GTTTTGTTTTTATTTGAAGT+TGG | + | chr1_2:63481788-63481807 | None:intergenic | 20.0% |
| !!! | TAATTCAAACTTTGAAACAA+AGG | + | chr1_2:63482276-63482295 | None:intergenic | 20.0% |
| !!! | ACTGCTAATTTTAAAAATAC+AGG | + | chr1_2:63482965-63482984 | None:intergenic | 20.0% |
| !! | GAAGCATAAATAAATACTTT+GGG | - | chr1_2:63483530-63483549 | Msa0084180:intron | 20.0% |
| !!! | CGCTTTTACTAATAAATAAA+TGG | - | chr1_2:63483723-63483742 | Msa0084180:intron | 20.0% |
| !! | AATCATAATAGAAAGAAGTT+TGG | - | chr1_2:63483966-63483985 | Msa0084180:intron | 20.0% |
| !! | AAAAAAATAATAAACAGAGG+GGG | + | chr1_2:63484387-63484406 | None:intergenic | 20.0% |
| !! | GAAAAAAATAATAAACAGAG+GGG | + | chr1_2:63484388-63484407 | None:intergenic | 20.0% |
| !!! | TGGAAAATAATTCCATTTTT+TGG | - | chr1_2:63484498-63484517 | Msa0084180:intron | 20.0% |
| !!! | GGAAAATAATTCCATTTTTT+GGG | - | chr1_2:63484499-63484518 | Msa0084180:intron | 20.0% |
| !!! | ATTTTTATATCTTCCAGATT+TGG | - | chr1_2:63484608-63484627 | Msa0084180:CDS | 20.0% |
| !!! | TTTTTATATCTTCCAGATTT+GGG | - | chr1_2:63484609-63484628 | Msa0084180:CDS | 20.0% |
| !! | ATGTTCAAAATGTAAATGTA+GGG | + | chr1_2:63484973-63484992 | None:intergenic | 20.0% |
| !! | TATGTTCAAAATGTAAATGT+AGG | + | chr1_2:63484974-63484993 | None:intergenic | 20.0% |
| !!! | TATTTGAAGTTGGTGAATTT+GGG | + | chr1_2:63481778-63481797 | None:intergenic | 25.0% |
| !!! | TTATTTGAAGTTGGTGAATT+TGG | + | chr1_2:63481779-63481798 | None:intergenic | 25.0% |
| !!! | TTAGAGTGATTGTTTTTGTT+GGG | + | chr1_2:63481813-63481832 | None:intergenic | 25.0% |
| !!! | ATTAGAGTGATTGTTTTTGT+TGG | + | chr1_2:63481814-63481833 | None:intergenic | 25.0% |
| ! | AAAAGAGGAATTACATGAAA+TGG | + | chr1_2:63481859-63481878 | None:intergenic | 25.0% |
| !! | AATGCTTTGAATTTCCATTA+GGG | + | chr1_2:63481944-63481963 | None:intergenic | 25.0% |
| !! | TAATGGAAATTCAAAGCATT+GGG | - | chr1_2:63481944-63481963 | Msa0084180:three_prime_UTR | 25.0% |
| !!! | TCAAATTTTGACCAAAATCA+TGG | - | chr1_2:63482031-63482050 | Msa0084180:three_prime_UTR | 25.0% |
| !!! | CAAATTTTGACCAAAATCAT+GGG | - | chr1_2:63482032-63482051 | Msa0084180:three_prime_UTR | 25.0% |
| ! | TGTGTATATATCATGTTTCA+TGG | - | chr1_2:63482171-63482190 | Msa0084180:intron | 25.0% |
| !! | TTTCATGGAAAACCAATTTT+GGG | - | chr1_2:63482186-63482205 | Msa0084180:intron | 25.0% |
| !!! | CAATTTTGAGTCTGAAAATA+AGG | - | chr1_2:63482384-63482403 | Msa0084180:intron | 25.0% |
| ! | TCTGAAAATAAGGATTATGA+AGG | - | chr1_2:63482394-63482413 | Msa0084180:intron | 25.0% |
| ! | AATGTGTGGAATTTACAAAA+CGG | + | chr1_2:63482424-63482443 | None:intergenic | 25.0% |
| ! | AAAATATCATCCTAGATACA+AGG | + | chr1_2:63482523-63482542 | None:intergenic | 25.0% |
| ! | ATCTAAATTGAGCAATCAAT+TGG | + | chr1_2:63482866-63482885 | None:intergenic | 25.0% |
| !! | ATATATGTATGTATTGGTGT+TGG | - | chr1_2:63482936-63482955 | Msa0084180:CDS | 25.0% |
| ! | TCATACTTCATTGACATAAA+TGG | - | chr1_2:63483056-63483075 | Msa0084180:intron | 25.0% |
| !! | GGAAGCATAAATAAATACTT+TGG | - | chr1_2:63483529-63483548 | Msa0084180:intron | 25.0% |
| ! | TAAAATTTCAAAAAGGTCCA+AGG | - | chr1_2:63483775-63483794 | Msa0084180:intron | 25.0% |
| ! | AAAATTTCAAAAAGGTCCAA+GGG | - | chr1_2:63483776-63483795 | Msa0084180:intron | 25.0% |
| ! | ATGTAGGAAGAAAAAGAATA+TGG | - | chr1_2:63483936-63483955 | Msa0084180:intron | 25.0% |
| ! | TGTAGGAAGAAAAAGAATAT+GGG | - | chr1_2:63483937-63483956 | Msa0084180:intron | 25.0% |
| ! | GATACAGTCTATATCTTAAA+TGG | - | chr1_2:63484208-63484227 | Msa0084180:intron | 25.0% |
| ! | CATGTATTAGTGAATTATGT+TGG | + | chr1_2:63484297-63484316 | None:intergenic | 25.0% |
| ! | AAAAAATAATAAACAGAGGG+GGG | + | chr1_2:63484386-63484405 | None:intergenic | 25.0% |
| !!! | AACTCTTTTTGATAATTGAC+CGG | + | chr1_2:63484416-63484435 | None:intergenic | 25.0% |
| ! | TTTACATTACAAGCAATATC+TGG | - | chr1_2:63484478-63484497 | Msa0084180:intron | 25.0% |
| !!! | ATTTGCTATGTTAAGAACAA+TGG | + | chr1_2:63484590-63484609 | None:intergenic | 25.0% |
| !! | TGAAGATAAGTTGAATCAAA+TGG | + | chr1_2:63484759-63484778 | None:intergenic | 25.0% |
| ! | AAATGTAAATGTAGGGATAT+TGG | + | chr1_2:63484966-63484985 | None:intergenic | 25.0% |
| !!! | AACATTTTAATTTGCACCTT+TGG | - | chr1_2:63484997-63485016 | Msa0084180:CDS | 25.0% |
| ! | GATCTATTTGCAAAATCTTT+GGG | + | chr1_2:63485023-63485042 | None:intergenic | 25.0% |
| ! | AGATCTATTTGCAAAATCTT+TGG | + | chr1_2:63485024-63485043 | None:intergenic | 25.0% |
| TGTCTTTGATTCATTCTCAA+TGG | + | chr1_2:63481631-63481650 | None:intergenic | 30.0% | |
| !! | ACACAATTCTAAGGTTTCAT+GGG | + | chr1_2:63481675-63481694 | None:intergenic | 30.0% |
| ATGTTTGTGACACAATTCTA+AGG | + | chr1_2:63481684-63481703 | None:intergenic | 30.0% | |
| TTAGAATTGTGTCACAAACA+TGG | - | chr1_2:63481683-63481702 | Msa0084180:three_prime_UTR | 30.0% | |
| !! | TTGAGATTTGGTGAATGTAA+CGG | + | chr1_2:63481724-63481743 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTGGTTTGAAAGA+GGG | + | chr1_2:63481753-63481772 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGGTTTGAAAG+AGG | + | chr1_2:63481754-63481773 | None:intergenic | 30.0% |
| !!! | TGAATTTGGGTTGTGTTTTT+TGG | + | chr1_2:63481765-63481784 | None:intergenic | 30.0% |
| TGCTGAAATTCTAGTAAAAG+AGG | + | chr1_2:63481874-63481893 | None:intergenic | 30.0% | |
| ! | CAATGCTTTGAATTTCCATT+AGG | + | chr1_2:63481945-63481964 | None:intergenic | 30.0% |
| CTAATGGAAATTCAAAGCAT+TGG | - | chr1_2:63481943-63481962 | Msa0084180:three_prime_UTR | 30.0% | |
| TGGTCAAAATTTGAGCATAA+TGG | + | chr1_2:63482025-63482044 | None:intergenic | 30.0% | |
| ! | TACTTACTTTCCCATGATTT+TGG | + | chr1_2:63482045-63482064 | None:intergenic | 30.0% |
| AAATCATGGGAAAGTAAGTA+AGG | - | chr1_2:63482045-63482064 | Msa0084180:three_prime_UTR | 30.0% | |
| ! | GTTTCATGGAAAACCAATTT+TGG | - | chr1_2:63482185-63482204 | Msa0084180:intron | 30.0% |
| TTCACAACAAAACCCAAAAT+TGG | + | chr1_2:63482201-63482220 | None:intergenic | 30.0% | |
| TATTAGCAAAAAGTTCCCAA+AGG | + | chr1_2:63482451-63482470 | None:intergenic | 30.0% | |
| TTACCTAGGTATAAGTTATG+TGG | - | chr1_2:63482481-63482500 | Msa0084180:intron | 30.0% | |
| ATACCACATAACTTATACCT+AGG | + | chr1_2:63482487-63482506 | None:intergenic | 30.0% | |
| !! | TGATTTTAGTCCTTGTATCT+AGG | - | chr1_2:63482510-63482529 | Msa0084180:intron | 30.0% |
| ! | TTTATGACTACGAGGTTTTA+AGG | - | chr1_2:63482702-63482721 | Msa0084180:CDS | 30.0% |
| TTGATAGAAACTAGTTCAGA+AGG | - | chr1_2:63483080-63483099 | Msa0084180:intron | 30.0% | |
| !!! | ATGTTTTGACAGAAACTACT+TGG | - | chr1_2:63483177-63483196 | Msa0084180:intron | 30.0% |
| CATATGTTCAGGTAGAAATT+TGG | - | chr1_2:63483308-63483327 | Msa0084180:intron | 30.0% | |
| ! | ACAAAGAAACTTTTTGTGAC+AGG | - | chr1_2:63483387-63483406 | Msa0084180:CDS | 30.0% |
| ! | ACTTTTATCTCCTATTCATC+TGG | - | chr1_2:63483456-63483475 | Msa0084180:intron | 30.0% |
| AGTTATTTGTCTCTTGAACA+GGG | - | chr1_2:63483586-63483605 | Msa0084180:intron | 30.0% | |
| TTCAATAAATGCATAACCCT+TGG | + | chr1_2:63483795-63483814 | None:intergenic | 30.0% | |
| ATTTATTGAATACACCACAG+AGG | - | chr1_2:63483805-63483824 | Msa0084180:intron | 30.0% | |
| TTACATGCATGAAAGAAAGA+TGG | + | chr1_2:63483875-63483894 | None:intergenic | 30.0% | |
| ! | TTCTTTTCTTATCAAGCAGA+TGG | + | chr1_2:63484097-63484116 | None:intergenic | 30.0% |
| GATAAGAAAAGAAGTCTGTA+AGG | - | chr1_2:63484104-63484123 | Msa0084180:intron | 30.0% | |
| ! | ATTATGTTGGTAGAGACAAT+TGG | + | chr1_2:63484284-63484303 | None:intergenic | 30.0% |
| TGTAATGTAAAGAATCTGGA+TGG | + | chr1_2:63484469-63484488 | None:intergenic | 30.0% | |
| TGCTTGTAATGTAAAGAATC+TGG | + | chr1_2:63484473-63484492 | None:intergenic | 30.0% | |
| !!! | ATAATTCCATTTTTTGGGTG+TGG | - | chr1_2:63484504-63484523 | Msa0084180:intron | 30.0% |
| GAAATGATAGAGAAGTAACT+TGG | + | chr1_2:63484710-63484729 | None:intergenic | 30.0% | |
| TAACTACTGAAAAACATCTC+CGG | + | chr1_2:63484818-63484837 | None:intergenic | 30.0% | |
| GCACAGTAAATCTTTAACTA+TGG | - | chr1_2:63485143-63485162 | Msa0084180:five_prime_UTR | 30.0% | |
| !! | GACACAATTCTAAGGTTTCA+TGG | + | chr1_2:63481676-63481695 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTGAAAGAGGGAA+GGG | + | chr1_2:63481748-63481767 | None:intergenic | 35.0% |
| !!! | TTTTTGGTTTGAAAGAGGGA+AGG | + | chr1_2:63481749-63481768 | None:intergenic | 35.0% |
| !! | AACAACAACATATCGGTTTG+TGG | + | chr1_2:63481918-63481937 | None:intergenic | 35.0% |
| AGGGAACAACAACAACATAT+CGG | + | chr1_2:63481925-63481944 | None:intergenic | 35.0% | |
| ! | ATGTTGTTGTTGTTCCCTAA+TGG | - | chr1_2:63481927-63481946 | Msa0084180:three_prime_UTR | 35.0% |
| !! | AAAGCATTGGGTTGTTAGAA+TGG | - | chr1_2:63481956-63481975 | Msa0084180:three_prime_UTR | 35.0% |
| ATGGTCAACAATTTGAGCTT+TGG | + | chr1_2:63482006-63482025 | None:intergenic | 35.0% | |
| GTTGTTTGTTTGCAGTGAAA+AGG | - | chr1_2:63482139-63482158 | Msa0084180:three_prime_UTR | 35.0% | |
| !! | GTTTTGTTGTGAACTTGATG+AGG | - | chr1_2:63482208-63482227 | Msa0084180:intron | 35.0% |
| TTGTTGTGAACTTGTGATTG+TGG | - | chr1_2:63482322-63482341 | Msa0084180:intron | 35.0% | |
| TCAGACTCAAAATTGTCATC+TGG | + | chr1_2:63482379-63482398 | None:intergenic | 35.0% | |
| ! | ATTCCACACATTTTTGCCTT+TGG | - | chr1_2:63482432-63482451 | Msa0084180:intron | 35.0% |
| ! | TTCCACACATTTTTGCCTTT+GGG | - | chr1_2:63482433-63482452 | Msa0084180:intron | 35.0% |
| GAAGTAGTGATGATCAATGA+AGG | - | chr1_2:63482731-63482750 | Msa0084180:CDS | 35.0% | |
| !! | TGACTTGCTTCAGAAGAATT+TGG | + | chr1_2:63483351-63483370 | None:intergenic | 35.0% |
| !! | AAATTCTTCTGAAGCAAGTC+AGG | - | chr1_2:63483350-63483369 | Msa0084180:intron | 35.0% |
| !! | ACGACATAACATTGATTCTG+AGG | - | chr1_2:63483417-63483436 | Msa0084180:CDS | 35.0% |
| GTAAGAACATCCAGATGAAT+AGG | + | chr1_2:63483469-63483488 | None:intergenic | 35.0% | |
| TGTGTGAATTACTCTGTCAA+TGG | - | chr1_2:63483508-63483527 | Msa0084180:intron | 35.0% | |
| CAGTTATTTGTCTCTTGAAC+AGG | - | chr1_2:63483585-63483604 | Msa0084180:intron | 35.0% | |
| ATTCACTGTTCTCTTGTAGA+AGG | - | chr1_2:63483690-63483709 | Msa0084180:intron | 35.0% | |
| ! | AATGCAATTTTGCTTTGTGC+TGG | - | chr1_2:63483895-63483914 | Msa0084180:intron | 35.0% |
| TTGTGCGTGCAGATTATTAA+TGG | - | chr1_2:63484007-63484026 | Msa0084180:intron | 35.0% | |
| TATTAATGGCTGGATGATAG+TGG | - | chr1_2:63484021-63484040 | Msa0084180:intron | 35.0% | |
| TTATGTCCACACCCAAAAAA+TGG | + | chr1_2:63484513-63484532 | None:intergenic | 35.0% | |
| AATGCATGCTTCATTCAACA+AGG | - | chr1_2:63484642-63484661 | Msa0084180:intron | 35.0% | |
| CTTGGACGATGATGTTATAA+GGG | - | chr1_2:63484665-63484684 | Msa0084180:intron | 35.0% | |
| TTGGACGATGATGTTATAAG+GGG | - | chr1_2:63484666-63484685 | Msa0084180:intron | 35.0% | |
| ATAGAGAAGTAACTTGGTCA+GGG | + | chr1_2:63484704-63484723 | None:intergenic | 35.0% | |
| TTGAATCAAATGGAGACAGA+GGG | + | chr1_2:63484749-63484768 | None:intergenic | 35.0% | |
| TAGACACCCATAATATTCTC+CGG | - | chr1_2:63484796-63484815 | Msa0084180:CDS | 35.0% | |
| ACATCTCCGGAGAATATTAT+GGG | + | chr1_2:63484805-63484824 | None:intergenic | 35.0% | |
| AACATCTCCGGAGAATATTA+TGG | + | chr1_2:63484806-63484825 | None:intergenic | 35.0% | |
| TTATAACCACACATGCTCTT+AGG | - | chr1_2:63484842-63484861 | Msa0084180:CDS | 35.0% | |
| CCATTTCATAAAGATGTCAG+AGG | + | chr1_2:63485053-63485072 | None:intergenic | 35.0% | |
| CCTCTGACATCTTTATGAAA+TGG | - | chr1_2:63485050-63485069 | Msa0084180:CDS | 35.0% | |
| GTCATATCCTCAAAACCCAA+AGG | + | chr1_2:63481593-63481612 | None:intergenic | 40.0% | |
| CGGTTTGTGGAATTGATGTT+TGG | + | chr1_2:63481905-63481924 | None:intergenic | 40.0% | |
| AGAATGGATAAACCTGCTGT+TGG | - | chr1_2:63481972-63481991 | Msa0084180:three_prime_UTR | 40.0% | |
| TTCCCAAAGGCAAAAATGTG+TGG | + | chr1_2:63482438-63482457 | None:intergenic | 40.0% | |
| ! | CTGACACTTTTATGACTACG+AGG | - | chr1_2:63482694-63482713 | Msa0084180:CDS | 40.0% |
| ATGAAGCACAGACTTTGACA+CGG | + | chr1_2:63483004-63483023 | None:intergenic | 40.0% | |
| CCTGAACATATGTAGTTAGC+AGG | + | chr1_2:63483300-63483319 | None:intergenic | 40.0% | |
| CCTGCTAACTACATATGTTC+AGG | - | chr1_2:63483297-63483316 | Msa0084180:intron | 40.0% | |
| ! | GGAGAACATTTTTGCTTGCA+GGG | - | chr1_2:63483551-63483570 | Msa0084180:intron | 40.0% |
| TATTGAATACACCACAGAGG+AGG | - | chr1_2:63483808-63483827 | Msa0084180:intron | 40.0% | |
| ACTCAAAGAGATGAATGGCA+AGG | - | chr1_2:63483844-63483863 | Msa0084180:intron | 40.0% | |
| TTCTTATCAAGCAGATGGTC+TGG | + | chr1_2:63484092-63484111 | None:intergenic | 40.0% | |
| ATCTGGATGGAAGAATACAC+AGG | + | chr1_2:63484456-63484475 | None:intergenic | 40.0% | |
| ! | TTGCATTTAGCTCCCAAATC+TGG | + | chr1_2:63484624-63484643 | None:intergenic | 40.0% |
| ATGCTTCATTCAACAAGGCT+TGG | - | chr1_2:63484647-63484666 | Msa0084180:intron | 40.0% | |
| GCTTGGACGATGATGTTATA+AGG | - | chr1_2:63484664-63484683 | Msa0084180:intron | 40.0% | |
| TAGAGAAGTAACTTGGTCAG+GGG | + | chr1_2:63484703-63484722 | None:intergenic | 40.0% | |
| GATAGAGAAGTAACTTGGTC+AGG | + | chr1_2:63484705-63484724 | None:intergenic | 40.0% | |
| TGAATCAAATGGAGACAGAG+GGG | + | chr1_2:63484748-63484767 | None:intergenic | 40.0% | |
| GTTGAATCAAATGGAGACAG+AGG | + | chr1_2:63484750-63484769 | None:intergenic | 40.0% | |
| TTTGAAAGTTCAGTGTGTGC+AGG | + | chr1_2:63484936-63484955 | None:intergenic | 40.0% | |
| TTGCAAAATCTTTGGGCCAA+AGG | + | chr1_2:63485016-63485035 | None:intergenic | 40.0% | |
| ! | CACATACTTTTCTGTCCAAC+AGG | - | chr1_2:63485080-63485099 | Msa0084180:exon | 40.0% |
| !! | CACTACACCTTTGGGTTTTG+AGG | - | chr1_2:63481583-63481602 | Msa0084180:three_prime_UTR | 45.0% |
| ! | AGAGGGAAGGGTTTGAGATT+TGG | + | chr1_2:63481736-63481755 | None:intergenic | 45.0% |
| ! | TTGGTAACAACACCAACAGC+AGG | + | chr1_2:63481987-63482006 | None:intergenic | 45.0% |
| TGAACTTGTGATTGTGGTGC+AGG | - | chr1_2:63482328-63482347 | Msa0084180:intron | 45.0% | |
| AGACACTTGTCTAACACGTG+TGG | + | chr1_2:63482619-63482638 | None:intergenic | 45.0% | |
| ! | GGGAGAACATTTTTGCTTGC+AGG | - | chr1_2:63483550-63483569 | Msa0084180:intron | 45.0% |
| CTCACCAAAGCCTTCAAATG+CGG | + | chr1_2:63483646-63483665 | None:intergenic | 45.0% | |
| GCAGCACTCAAAGAGATGAA+TGG | - | chr1_2:63483839-63483858 | Msa0084180:intron | 45.0% | |
| CTGCTTCGTGATTGTCATGT+AGG | - | chr1_2:63483920-63483939 | Msa0084180:intron | 45.0% | |
| GCGTGCAGATTATTAATGGC+TGG | - | chr1_2:63484011-63484030 | Msa0084180:intron | 45.0% | |
| TACCCCACCAAGATACAACA+AGG | - | chr1_2:63484060-63484079 | Msa0084180:intron | 45.0% | |
| ACCCCACCAAGATACAACAA+GGG | - | chr1_2:63484061-63484080 | Msa0084180:intron | 45.0% | |
| ! | ACCCTTGTTGTATCTTGGTG+GGG | + | chr1_2:63484065-63484084 | None:intergenic | 45.0% |
| ! | GACCCTTGTTGTATCTTGGT+GGG | + | chr1_2:63484066-63484085 | None:intergenic | 45.0% |
| GCTATTAATTACCAGCTCCG+TGG | - | chr1_2:63484132-63484151 | Msa0084180:intron | 45.0% | |
| ACGAAGACTCAGTTCATCCA+CGG | + | chr1_2:63484152-63484171 | None:intergenic | 45.0% | |
| ACAATGGCATGAGTGAACAC+TGG | + | chr1_2:63484574-63484593 | None:intergenic | 45.0% | |
| ! | TCACTTCCTAAGAGCATGTG+TGG | + | chr1_2:63484851-63484870 | None:intergenic | 45.0% |
| GCGAATCCAGTGTATCATGA+GGG | - | chr1_2:63484904-63484923 | Msa0084180:CDS | 45.0% | |
| !!! | AAAATACTAAAATTTAATTT+TGG | - | chr1_2:63485175-63485194 | Msa0084180:five_prime_UTR | 5.0% |
| GATTGTGCACATGAGCTAGC+TGG | - | chr1_2:63482230-63482249 | Msa0084180:intron | 50.0% | |
| TTGTCTAACACGTGTGGCAC+GGG | + | chr1_2:63482613-63482632 | None:intergenic | 50.0% | |
| CTTGTCTAACACGTGTGGCA+CGG | + | chr1_2:63482614-63482633 | None:intergenic | 50.0% | |
| !! | GGCTTTGGTGAGCTTGTTGA+AGG | - | chr1_2:63483654-63483673 | Msa0084180:intron | 50.0% |
| ! | CTCTTTGAGTGCTGCACTTG+CGG | + | chr1_2:63483834-63483853 | None:intergenic | 50.0% |
| GTATCTTGGTGGGGTAGTCT+TGG | + | chr1_2:63484056-63484075 | None:intergenic | 50.0% | |
| ! | CGACCCTTGTTGTATCTTGG+TGG | + | chr1_2:63484067-63484086 | None:intergenic | 50.0% |
| ! | GCACGACCCTTGTTGTATCT+TGG | + | chr1_2:63484070-63484089 | None:intergenic | 50.0% |
| !! | AACAGAGGGGGGTTGATGTT+TGG | + | chr1_2:63484375-63484394 | None:intergenic | 50.0% |
| TCAAATGGAGACAGAGGGGA+AGG | + | chr1_2:63484744-63484763 | None:intergenic | 50.0% | |
| GGCGAATCCAGTGTATCATG+AGG | - | chr1_2:63484903-63484922 | Msa0084180:CDS | 50.0% | |
| TGCACACCCTCATGATACAC+TGG | + | chr1_2:63484913-63484932 | None:intergenic | 50.0% | |
| ! | TCTGTCCAACAGGCTTGTTC+TGG | - | chr1_2:63485090-63485109 | Msa0084180:exon | 50.0% |
| ! | TCCAACAGGCTTGTTCTGGT+AGG | - | chr1_2:63485094-63485113 | Msa0084180:five_prime_UTR | 50.0% |
| GGCTGAACAGACAAGACACC+AGG | + | chr1_2:63482358-63482377 | None:intergenic | 55.0% | |
| ! | ACGCTTAATGCCAGAGGCGT+CGG | + | chr1_2:63482574-63482593 | None:intergenic | 55.0% |
| CTCTGGCATTAAGCGTGTCC+CGG | - | chr1_2:63482578-63482597 | Msa0084180:intron | 55.0% | |
| CACAGACTTTGACACGGACG+TGG | + | chr1_2:63482998-63483017 | None:intergenic | 55.0% | |
| ACCTTACGCGCCGCATTTGA+AGG | - | chr1_2:63483633-63483652 | Msa0084180:intron | 55.0% | |
| ACTCAGTTCATCCACGGAGC+TGG | + | chr1_2:63484146-63484165 | None:intergenic | 55.0% | |
| !! | GGGGGTTGATGTTTGGCAAC+AGG | + | chr1_2:63484368-63484387 | None:intergenic | 55.0% |
| CACGTACCAGCGATCACTAG+AGG | - | chr1_2:63484882-63484901 | Msa0084180:CDS | 55.0% | |
| GATTCGCCTCTAGTGATCGC+TGG | + | chr1_2:63484891-63484910 | None:intergenic | 55.0% | |
| GCCTACCAGAACAAGCCTGT+TGG | + | chr1_2:63485098-63485117 | None:intergenic | 55.0% | |
| GATTGTGGTGCAGGTGTGCC+TGG | - | chr1_2:63482337-63482356 | Msa0084180:intron | 60.0% | |
| CGGGACACGCTTAATGCCAG+AGG | + | chr1_2:63482580-63482599 | None:intergenic | 60.0% | |
| AACACGTGTGGCACGGGTGT+CGG | + | chr1_2:63482607-63482626 | None:intergenic | 60.0% | |
| GCCTTCAAATGCGGCGCGTA+AGG | + | chr1_2:63483637-63483656 | None:intergenic | 60.0% | |
| CGCGCCGCATTTGAAGGCTT+TGG | - | chr1_2:63483639-63483658 | Msa0084180:intron | 60.0% | |
| TTGGTCAGCTCCGACGCCTC+TGG | - | chr1_2:63482561-63482580 | Msa0084180:intron | 65.0% | |
| TGCACTTGCGGCCTCCTCTG+TGG | + | chr1_2:63483822-63483841 | None:intergenic | 65.0% | |
| !! | TGGCACGGGTGTCGGTCACC+GGG | + | chr1_2:63482599-63482618 | None:intergenic | 70.0% |
| !! | GTGGCACGGGTGTCGGTCAC+CGG | + | chr1_2:63482600-63482619 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 63481582 | 63485211 | 63481582 | ID=Msa0084180;Name=Msa0084180 |
| chr1_2 | mRNA | 63481582 | 63485211 | 63481582 | ID=Msa0084180-mRNA-1;Parent=Msa0084180;Name=Msa0084180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=120|1|1|1|0.85|0.75|8|607|290 |
| chr1_2 | exon | 63481582 | 63482168 | 63481582 | ID=Msa0084180-mRNA-1:exon:21231;Parent=Msa0084180-mRNA-1 |
| chr1_2 | exon | 63482668 | 63482774 | 63482668 | ID=Msa0084180-mRNA-1:exon:21230;Parent=Msa0084180-mRNA-1 |
| chr1_2 | exon | 63482928 | 63483034 | 63482928 | ID=Msa0084180-mRNA-1:exon:21229;Parent=Msa0084180-mRNA-1 |
| chr1_2 | exon | 63483118 | 63483186 | 63483118 | ID=Msa0084180-mRNA-1:exon:21228;Parent=Msa0084180-mRNA-1 |
| chr1_2 | exon | 63483385 | 63483474 | 63483385 | ID=Msa0084180-mRNA-1:exon:21227;Parent=Msa0084180-mRNA-1 |
| chr1_2 | exon | 63484378 | 63484443 | 63484378 | ID=Msa0084180-mRNA-1:exon:21226;Parent=Msa0084180-mRNA-1 |
| chr1_2 | exon | 63484542 | 63484639 | 63484542 | ID=Msa0084180-mRNA-1:exon:21225;Parent=Msa0084180-mRNA-1 |
| chr1_2 | exon | 63484736 | 63485211 | 63484736 | ID=Msa0084180-mRNA-1:exon:21224;Parent=Msa0084180-mRNA-1 |
| chr1_2 | five_prime_UTR | 63485092 | 63485211 | 63485092 | ID=Msa0084180-mRNA-1:five_prime_utr;Parent=Msa0084180-mRNA-1 |
| chr1_2 | CDS | 63484736 | 63485091 | 63484736 | ID=Msa0084180-mRNA-1:cds;Parent=Msa0084180-mRNA-1 |
| chr1_2 | CDS | 63484542 | 63484639 | 63484542 | ID=Msa0084180-mRNA-1:cds;Parent=Msa0084180-mRNA-1 |
| chr1_2 | CDS | 63484378 | 63484443 | 63484378 | ID=Msa0084180-mRNA-1:cds;Parent=Msa0084180-mRNA-1 |
| chr1_2 | CDS | 63483385 | 63483474 | 63483385 | ID=Msa0084180-mRNA-1:cds;Parent=Msa0084180-mRNA-1 |
| chr1_2 | CDS | 63483118 | 63483186 | 63483118 | ID=Msa0084180-mRNA-1:cds;Parent=Msa0084180-mRNA-1 |
| chr1_2 | CDS | 63482928 | 63483034 | 63482928 | ID=Msa0084180-mRNA-1:cds;Parent=Msa0084180-mRNA-1 |
| chr1_2 | CDS | 63482688 | 63482774 | 63482688 | ID=Msa0084180-mRNA-1:cds;Parent=Msa0084180-mRNA-1 |
| chr1_2 | three_prime_UTR | 63482668 | 63482687 | 63482668 | ID=Msa0084180-mRNA-1:three_prime_utr;Parent=Msa0084180-mRNA-1 |
| chr1_2 | three_prime_UTR | 63481582 | 63482168 | 63481582 | ID=Msa0084180-mRNA-1:three_prime_utr;Parent=Msa0084180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
