AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0424930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424930 MtrunA17_Chr3g0126901 97.045 440 10 1 1 437 1 440 0.0 885
Msa0424930 MtrunA17_Chr1g0146931 55.023 438 150 13 40 433 49 483 1.68e-104 318
Msa0424930 MtrunA17_Chr8g0346021 33.813 417 192 15 1 360 1 390 4.27e-38 145
Msa0424930 MtrunA17_Chr7g0273861 28.634 454 228 19 1 401 1 411 8.61e-28 114
Msa0424930 MtrunA17_Chr6g0462191 36.806 288 143 9 1 269 1 268 3.13e-27 112
Msa0424930 MtrunA17_Chr1g0181581 26.773 437 241 15 1 369 1 426 5.70e-27 112
Msa0424930 MtrunA17_Chr1g0200161 37.640 178 85 4 109 272 141 306 1.15e-26 112
Msa0424930 MtrunA17_Chr4g0020671 26.633 398 218 15 1 365 1 357 1.80e-26 110
Msa0424930 MtrunA17_Chr7g0263731 35.593 295 136 12 1 269 1 267 1.57e-24 105
Msa0424930 MtrunA17_Chr4g0025441 38.144 194 78 6 104 278 88 258 3.98e-24 103
Msa0424930 MtrunA17_Chr4g0045641 26.609 466 233 16 1 369 1 454 8.61e-22 97.8
Msa0424930 MtrunA17_Chr1g0204901 55.952 84 34 2 97 177 121 204 3.68e-21 95.5
Msa0424930 MtrunA17_Chr1g0156121 34.884 172 68 5 109 270 124 261 6.67e-21 95.5
Msa0424930 MtrunA17_Chr6g0472551 34.848 198 93 5 111 308 119 280 9.01e-21 94.4
Msa0424930 MtrunA17_Chr8g0371131 60.526 76 29 1 106 181 68 142 9.76e-21 88.2
Msa0424930 MtrunA17_Chr1g0203711 63.768 69 25 0 109 177 115 183 1.59e-19 90.5
Msa0424930 MtrunA17_Chr3g0135851 42.857 168 88 5 109 269 91 257 1.62e-19 90.5
Msa0424930 MtrunA17_Chr8g0389781 58.442 77 27 1 98 169 110 186 4.67e-19 89.0
Msa0424930 MtrunA17_Chr8g0340761 56.000 75 33 0 111 185 128 202 1.04e-18 87.8
Msa0424930 MtrunA17_Chr1g0172611 27.318 399 221 12 4 373 3 361 1.42e-18 87.0
Msa0424930 MtrunA17_Chr7g0273951 58.571 70 29 0 108 177 105 174 2.27e-18 86.7
Msa0424930 MtrunA17_Chr4g0060381 36.076 158 78 4 107 255 98 241 2.55e-18 87.4
Msa0424930 MtrunA17_Chr2g0330921 52.174 92 37 1 94 178 75 166 2.01e-17 83.2
Msa0424930 MtrunA17_Chr1g0166431 56.579 76 32 1 87 161 94 169 6.16e-17 82.8
Msa0424930 MtrunA17_Chr4g0057321 58.209 67 27 1 111 176 90 156 2.21e-14 74.7
Msa0424930 MtrunA17_Chr2g0283321 30.000 180 108 5 111 283 65 233 2.42e-14 73.6
Msa0424930 MtrunA17_Chr2g0330051 34.965 143 77 6 138 269 107 244 8.84e-12 66.6
Msa0424930 MtrunA17_Chr5g0416161 32.386 176 72 7 107 271 117 256 1.20e-11 67.0
Msa0424930 MtrunA17_Chr7g0215371 52.632 57 27 0 109 165 19 75 1.88e-11 60.5
Msa0424930 MtrunA17_Chr8g0342551 59.036 83 32 1 107 187 88 170 3.43e-11 64.7
Msa0424930 MtrunA17_Chr2g0316401 25.698 179 107 5 111 277 76 240 5.41e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424930 AT3G49260.1 45.111 450 197 18 1 405 1 445 2.10e-86 272
Msa0424930 AT3G49260.4 45.111 450 197 18 1 405 1 445 2.10e-86 272
Msa0424930 AT3G49260.2 45.111 450 197 18 1 405 1 445 2.10e-86 272
Msa0424930 AT3G49260.3 45.233 451 196 18 1 405 1 446 3.94e-86 271
Msa0424930 AT5G03040.1 30.425 424 214 13 1 360 1 407 8.44e-38 143
Msa0424930 AT5G03040.3 30.425 424 214 13 1 360 1 407 8.44e-38 143
Msa0424930 AT5G03040.2 30.425 424 214 13 1 360 1 407 8.44e-38 143
Msa0424930 AT3G52290.1 32.874 435 186 15 5 367 2 402 5.56e-37 140
Msa0424930 AT4G00820.1 32.544 338 171 12 63 370 85 395 5.85e-31 125
Msa0424930 AT1G01110.2 31.188 404 213 14 1 364 1 379 6.50e-31 125
Msa0424930 AT3G09710.1 37.297 185 90 5 96 269 98 267 3.34e-29 119
Msa0424930 AT3G59690.2 26.770 452 226 16 1 364 1 435 2.56e-27 114
Msa0424930 AT3G59690.1 26.770 452 226 16 1 364 1 435 2.56e-27 114
Msa0424930 AT3G09710.2 29.393 313 140 11 4 269 3 281 3.10e-27 114
Msa0424930 AT4G10640.1 29.082 392 224 13 1 364 1 366 1.90e-26 110
Msa0424930 AT2G26180.1 40.488 205 115 4 109 306 84 288 6.87e-26 109
Msa0424930 AT3G49380.1 40.526 190 84 6 1 175 1 176 2.44e-23 100
Msa0424930 AT1G72670.1 29.412 374 221 12 1 354 1 351 2.73e-23 101
Msa0424930 AT3G22190.3 41.799 189 81 4 102 278 81 252 5.35e-23 100
Msa0424930 AT3G22190.2 41.799 189 81 4 102 278 81 252 5.35e-23 100
Msa0424930 AT3G22190.4 41.799 189 81 4 102 278 81 252 5.35e-23 100
Msa0424930 AT3G22190.1 41.799 189 81 4 102 278 81 252 5.35e-23 100
Msa0424930 AT5G13460.1 30.116 259 142 10 111 357 113 344 3.28e-22 99.0
Msa0424930 AT4G23060.1 31.673 281 165 9 98 364 157 424 2.95e-21 96.3
Msa0424930 AT4G14750.1 66.667 66 22 0 109 174 105 170 7.52e-21 94.4
Msa0424930 AT4G14750.2 66.667 66 22 0 109 174 164 229 1.25e-20 94.4
Msa0424930 AT4G14750.3 66.667 66 22 0 109 174 164 229 1.32e-20 94.4
Msa0424930 AT1G17480.1 42.063 126 67 2 107 232 92 211 3.61e-20 92.0
Msa0424930 AT2G43680.1 28.014 282 160 9 111 365 325 590 2.93e-19 90.9
Msa0424930 AT2G43680.4 28.014 282 160 9 111 365 324 589 3.14e-19 90.9
Msa0424930 AT2G43680.2 28.014 282 160 9 111 365 324 589 3.14e-19 90.9
Msa0424930 AT2G43680.3 28.014 282 160 9 111 365 324 589 3.14e-19 90.9
Msa0424930 AT2G43680.5 28.014 282 160 9 111 365 324 589 3.14e-19 90.9
Msa0424930 AT3G16490.1 50.000 96 43 1 98 193 96 186 9.81e-19 88.2
Msa0424930 AT2G26410.2 34.254 181 92 6 106 272 145 312 1.32e-18 88.6
Msa0424930 AT2G26410.1 34.254 181 92 6 106 272 145 312 1.32e-18 88.6
Msa0424930 AT5G07240.1 57.647 85 23 1 98 169 82 166 2.32e-18 87.0
Msa0424930 AT5G07240.2 57.647 85 23 1 98 169 128 212 2.83e-18 87.0
Msa0424930 AT1G18840.1 55.385 65 29 0 109 173 109 173 8.38e-18 86.3
Msa0424930 AT1G18840.3 55.385 65 29 0 109 173 109 173 8.38e-18 86.3
Msa0424930 AT1G18840.2 55.385 65 29 0 109 173 109 173 8.38e-18 86.3
Msa0424930 AT1G19870.2 33.929 168 62 5 109 269 32 157 1.03e-17 85.9
Msa0424930 AT1G19870.1 33.929 168 62 5 109 269 215 340 1.14e-17 86.3
Msa0424930 AT3G51380.1 56.338 71 30 1 106 176 34 103 1.50e-17 78.2
Msa0424930 AT4G29150.1 56.522 69 30 0 103 171 125 193 7.63e-16 79.3
Msa0424930 AT1G51960.1 43.478 92 51 1 111 201 102 193 1.80e-15 77.8
Msa0424930 AT5G62070.1 71.698 53 15 0 111 163 119 171 8.78e-15 76.3
Msa0424930 AT1G74690.1 53.846 65 30 0 109 173 113 177 1.37e-14 76.3
Msa0424930 AT1G14380.1 50.000 64 32 0 108 171 93 156 2.47e-14 75.5
Msa0424930 AT1G14380.3 50.000 64 32 0 108 171 93 156 2.47e-14 75.5
Msa0424930 AT1G14380.4 50.000 64 32 0 108 171 93 156 2.47e-14 75.5
Msa0424930 AT1G14380.6 50.000 64 32 0 108 171 93 156 3.01e-14 75.1
Msa0424930 AT1G14380.5 50.000 64 32 0 108 171 93 156 3.01e-14 75.1
Msa0424930 AT1G14380.2 50.000 64 32 0 108 171 93 156 3.01e-14 75.1
Msa0424930 AT1G14380.7 50.000 64 32 0 108 171 93 156 3.36e-14 75.1
Msa0424930 AT2G33990.1 28.431 204 126 8 111 306 49 240 1.56e-13 70.9
Msa0424930 AT5G03960.1 33.562 146 82 4 98 228 89 234 7.15e-11 64.3
Msa0424930 AT3G15050.1 27.528 178 111 4 108 277 49 216 7.31e-11 62.8
Msa0424930 AT5G03960.3 33.562 146 82 4 98 228 90 235 7.64e-11 63.9
Msa0424930 AT5G03960.2 33.562 146 82 4 98 228 90 235 7.64e-11 63.9

Find 149 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTAATTATTACTATTTA+TGG 0.027919 3_2:+75269323 Msa0424930:three_prime_UTR
TCAAACAATGTTAGGCCTTT+AGG 0.179218 3_2:+75268750 Msa0424930:CDS
GGGCTTGGGCTTCTAGTAAT+TGG 0.200692 3_2:-75269122 None:intergenic
CCTTCAATCTAAACGGATTT+CGG 0.207622 3_2:+75269163 Msa0424930:CDS
CAAACAATGTTAGGCCTTTA+GGG 0.216561 3_2:+75268751 Msa0424930:CDS
GGGCGTCGTTTGGATCTTAC+TGG 0.267147 3_2:+75269024 Msa0424930:CDS
CTTCAATCTAAACGGATTTC+GGG 0.269149 3_2:+75269164 Msa0424930:CDS
AAATTAAGGACACTGATTTC+AGG 0.276524 3_2:+75268018 Msa0424930:CDS
TGGCCTTTGCAGACTGTGTT+GGG 0.282948 3_2:-75268971 None:intergenic
GACTTAAATCATGAAATTCT+TGG 0.286842 3_2:-75268893 None:intergenic
CATCTTCCATAACAACAATT+AGG 0.288073 3_2:+75265222 Msa0424930:five_prime_UTR
CTTCCTTCATTCGTGATATC+TGG 0.297331 3_2:-75267162 None:intergenic
TGAAATCCTAATTGTTGTTA+TGG 0.298589 3_2:-75265228 None:intergenic
CGTTCACTATCATCAACATT+TGG 0.321117 3_2:-75268660 None:intergenic
TCAAAGTAGCCAGAAAATTA+AGG 0.332991 3_2:+75268004 Msa0424930:CDS
AGCAGCAGAGGAGGTATCTA+TGG 0.333458 3_2:+75267116 Msa0424930:CDS
ACGTGCACTGCGTGCTTTGA+AGG 0.337011 3_2:+75267776 Msa0424930:CDS
CATGGTATAGTATAATTATA+AGG 0.337361 3_2:-75269263 None:intergenic
ATATCATCAGTGGGTGTATA+TGG 0.341287 3_2:-75268795 None:intergenic
AACGACGCCCGATGCTTTGA+TGG 0.352089 3_2:-75269011 None:intergenic
AATGTTAGGCCTTTAGGGTT+GGG 0.372284 3_2:+75268756 Msa0424930:CDS
ACATGGAGCTACAATGAATA+AGG 0.377871 3_2:+75268043 Msa0424930:CDS
TGGGCCTTGACTCTTAATCT+TGG 0.382714 3_2:-75268991 None:intergenic
CCAACATTCATCTCAGAAAC+AGG 0.383345 3_2:+75265342 Msa0424930:five_prime_UTR
TCAAAGCATCGGGCGTCGTT+TGG 0.387573 3_2:+75269014 Msa0424930:CDS
CCAACCAGTTCCAATCCAAT+TGG 0.388280 3_2:-75268707 None:intergenic
AGAAGGAAAAGGAAGAGAAT+TGG 0.395607 3_2:+75267085 Msa0424930:intron
AGCTGCTAGAGTTGTGAGAT+TGG 0.400903 3_2:+75267275 Msa0424930:CDS
CCGAAATCCGTTTAGATTGA+AGG 0.401125 3_2:-75269163 None:intergenic
AGATGAATGTTGGTAGTTAC+TGG 0.406597 3_2:-75265332 None:intergenic
TATCACAATCAAACAATGTT+AGG 0.407700 3_2:+75268742 Msa0424930:CDS
ACACAAATGGTTGGAACTAT+AGG 0.408666 3_2:+75267979 Msa0424930:CDS
CGTGTTTGTCATGAGTCAAT+TGG 0.408853 3_2:-75267917 None:intergenic
GCAAGCATTGGTAAGGGTTC+AGG 0.410589 3_2:+75267872 Msa0424930:CDS
GTTCACTATCATCAACATTT+GGG 0.418874 3_2:-75268659 None:intergenic
TGGAGGTGTACCTAGCTATA+TGG 0.419424 3_2:+75268947 Msa0424930:CDS
TTGGCCTTTGCAGACTGTGT+TGG 0.420117 3_2:-75268972 None:intergenic
TATGATTCATCTGGCTCTGG+TGG 0.422243 3_2:+75269083 Msa0424930:CDS
GGCTATGATTCATCTGGCTC+TGG 0.428311 3_2:+75269080 Msa0424930:CDS
TGAGCGTGAAAGAGCCCAAT+TGG 0.428420 3_2:+75268692 Msa0424930:CDS
AGCTGAAGCTGCAGTGGCTG+CGG 0.436330 3_2:+75267245 Msa0424930:CDS
ATTCATGGGACAGTATTGTT+TGG 0.438679 3_2:-75265275 None:intergenic
CGTTGGTGGTGTTTAGAGAT+AGG 0.443029 3_2:-75268915 None:intergenic
GAGCCCAATTGGATTGGAAC+TGG 0.444353 3_2:+75268703 Msa0424930:CDS
CGGGTGCTGGTGTTGAGGAT+TGG 0.453226 3_2:+75269183 Msa0424930:CDS
GGGATGGGCTATGATTCATC+TGG 0.454170 3_2:+75269074 Msa0424930:CDS
TCCATACGCTTTCAACTGCC+AGG 0.454990 3_2:+75268076 Msa0424930:CDS
TGACAGTGACACAAAACATA+TGG 0.456294 3_2:-75269413 None:intergenic
CTTGTCCAGCCATGACCTCC+AGG 0.458475 3_2:-75269215 None:intergenic
ACAAAGGGGTGTATAGAAAA+GGG 0.459585 3_2:-75269465 None:intergenic
TTCAGCTGCTGCTGCAGCAT+AGG 0.460733 3_2:-75267229 None:intergenic
GTGTCACTGTCACTTAGAAA+AGG 0.463340 3_2:+75269424 Msa0424930:three_prime_UTR
AGGTCATGGACATAACTCTA+AGG 0.464310 3_2:+75267299 Msa0424930:CDS
CAATGTTAGGCCTTTAGGGT+TGG 0.466914 3_2:+75268755 Msa0424930:CDS
ATGATTCATCTGGCTCTGGT+GGG 0.467215 3_2:+75269084 Msa0424930:CDS
CTCATTCAGTCCTACTATAG+AGG 0.474856 3_2:+75267339 Msa0424930:CDS
ATGATTTCTCTCTTCAGTCA+AGG 0.475457 3_2:-75267199 None:intergenic
TACAAAGGGGTGTATAGAAA+AGG 0.477916 3_2:-75269466 None:intergenic
TCTAAACGGATTTCGGGTGC+TGG 0.479590 3_2:+75269170 Msa0424930:CDS
ATGTTAGGCCTTTAGGGTTG+GGG 0.482998 3_2:+75268757 Msa0424930:CDS
AGCAGCAGCTGAAGCTGCAG+TGG 0.484126 3_2:+75267239 Msa0424930:CDS
ACGGAGTCCTCCGACTGGGA+TGG 0.488447 3_2:+75269058 Msa0424930:CDS
GCTAGAGTTGTGAGATTGGC+AGG 0.489676 3_2:+75267279 Msa0424930:CDS
TGATTTCTCTCTTCAGTCAA+GGG 0.491440 3_2:-75267198 None:intergenic
TTTGCATGGATTGAGTCTCT+TGG 0.491563 3_2:-75268855 None:intergenic
TCCTCTCAGATGGGTAAGAA+AGG 0.494472 3_2:+75265544 Msa0424930:exon
GGATTCGCCTTCAATCTAAA+CGG 0.496890 3_2:+75269156 Msa0424930:CDS
GGCCTTTGCAGACTGTGTTG+GGG 0.500229 3_2:-75268970 None:intergenic
AGTTACTGGTCCTTCATGTA+TGG 0.501378 3_2:-75265318 None:intergenic
ACCTGGCAGTTGAAAGCGTA+TGG 0.501521 3_2:-75268077 None:intergenic
TCAGCACGGAGTCCTCCGAC+TGG 0.503212 3_2:+75269053 Msa0424930:CDS
CAACCAGTTCCAATCCAATT+GGG 0.509130 3_2:-75268706 None:intergenic
CGGAGTCCTCCGACTGGGAT+GGG 0.510075 3_2:+75269059 Msa0424930:CDS
TCAAGGCCCATCAAAGCATC+GGG 0.510279 3_2:+75269004 Msa0424930:CDS
ATTGGAACTGGTTGGAGCGT+TGG 0.514467 3_2:+75268715 Msa0424930:CDS
CATCAGTGGGTGTATATGGT+GGG 0.517012 3_2:-75268791 None:intergenic
GTATATGGTGGGGTCTCAAG+TGG 0.518909 3_2:-75268780 None:intergenic
TCAAGTGGCCCCAACCCTAA+AGG 0.519519 3_2:-75268765 None:intergenic
GTTGTGAGATTGGCAGGTCA+TGG 0.520639 3_2:+75267285 Msa0424930:CDS
ACGACAAAGTTAGACACAAA+TGG 0.522106 3_2:+75267966 Msa0424930:CDS
ACATAGCCTTTCCTCTCAGA+TGG 0.522560 3_2:+75265534 Msa0424930:exon
GATGCATGCAAGCATTGGTA+AGG 0.524234 3_2:+75267865 Msa0424930:CDS
GTCAAGGCCCATCAAAGCAT+CGG 0.524983 3_2:+75269003 Msa0424930:CDS
TCACCAGATATCACGAATGA+AGG 0.525050 3_2:+75267159 Msa0424930:CDS
TCATGAGGCCCATGTTTGCA+TGG 0.531097 3_2:-75268869 None:intergenic
CGTGCACTGCGTGCTTTGAA+GGG 0.531337 3_2:+75267777 Msa0424930:CDS
CATGAAATTCTTGGTTCATG+AGG 0.532356 3_2:-75268884 None:intergenic
GTGAAAGAGCCCAATTGGAT+TGG 0.532613 3_2:+75268697 Msa0424930:CDS
TACTAGGTATCCTCTATAGT+AGG 0.537083 3_2:-75267349 None:intergenic
GGTTTAGACCACACAATACA+TGG 0.539317 3_2:-75269281 None:intergenic
TATTGTGTGGTCTAAACCTT+GGG 0.540191 3_2:+75269286 Msa0424930:three_prime_UTR
TTCTTCAGACATATCATCAG+TGG 0.544019 3_2:-75268805 None:intergenic
ATCAGTGGGTGTATATGGTG+GGG 0.545609 3_2:-75268790 None:intergenic
CTCCACTGTGGTGTCGTTGG+TGG 0.546689 3_2:-75268929 None:intergenic
GATTTCGGGTGCTGGTGTTG+AGG 0.548721 3_2:+75269178 Msa0424930:CDS
CACCTCCACTGTGGTGTCGT+TGG 0.549460 3_2:-75268932 None:intergenic
TGATTCATCTGGCTCTGGTG+GGG 0.551322 3_2:+75269085 Msa0424930:CDS
ACGACGCCCGATGCTTTGAT+GGG 0.553948 3_2:-75269010 None:intergenic
TCTTCAGACATATCATCAGT+GGG 0.559544 3_2:-75268804 None:intergenic
CAAAGTTAGACACAAATGGT+TGG 0.564649 3_2:+75267970 Msa0424930:CDS
CTCAACTCTACAAGAGAACA+AGG 0.565237 3_2:+75265618 Msa0424930:CDS
GACTCAATCCATGCAAACAT+GGG 0.565689 3_2:+75268861 Msa0424930:CDS
ATATCTGGTGAACTATATGC+AGG 0.565870 3_2:-75267147 None:intergenic
AGACTCAATCCATGCAAACA+TGG 0.566185 3_2:+75268860 Msa0424930:CDS
TTTGTGTCTAACTTTGTCGT+AGG 0.567471 3_2:-75267963 None:intergenic
CCAATTGGATTGGAACTGGT+TGG 0.567620 3_2:+75268707 Msa0424930:CDS
TGAGATTGCAAGCACTTGTG+AGG 0.571803 3_2:+75267805 Msa0424930:CDS
GAGATTGCAAGCACTTGTGA+GGG 0.574688 3_2:+75267806 Msa0424930:CDS
TTCAGTCAAGGGTGTTGATG+TGG 0.575945 3_2:-75267187 None:intergenic
TGGGTAAGAAAGGAAGCAGT+TGG 0.576166 3_2:+75265554 Msa0424930:CDS
TGTGTTGGGGCCATATAGCT+AGG 0.577052 3_2:-75268957 None:intergenic
TCATCAGTGGGTGTATATGG+TGG 0.580532 3_2:-75268792 None:intergenic
GCAGCATGAAGCAGCAGAGG+AGG 0.582128 3_2:+75267107 Msa0424930:CDS
CCTGTTTCTGAGATGAATGT+TGG 0.586683 3_2:-75265342 None:intergenic
CAGCACGGAGTCCTCCGACT+GGG 0.587545 3_2:+75269054 Msa0424930:CDS
GACACTGATTTCAGGAAACA+TGG 0.590046 3_2:+75268026 Msa0424930:CDS
TCTTACCCATCTGAGAGGAA+AGG 0.590209 3_2:-75265540 None:intergenic
CATAGCCTTTCCTCTCAGAT+GGG 0.597012 3_2:+75265535 Msa0424930:exon
GGCCCCAACACAGTCTGCAA+AGG 0.604497 3_2:+75268968 Msa0424930:CDS
AATGCGATGCATGCAAGCAT+TGG 0.605182 3_2:+75267860 Msa0424930:CDS
TTGTCCAGCCATGACCTCCA+GGG 0.606858 3_2:-75269214 None:intergenic
GGTATAGTATAATTATAAGG+AGG 0.607103 3_2:-75269260 None:intergenic
TTGGCAGCATGAAGCAGCAG+AGG 0.610256 3_2:+75267104 Msa0424930:CDS
AGTAATTGGATGAGCAGCAG+TGG 0.612150 3_2:-75269108 None:intergenic
CCACCACACACCATACATGA+AGG 0.614977 3_2:+75265308 Msa0424930:five_prime_UTR
CAAACACGAGCGGACAGTAG+AGG 0.615256 3_2:+75267932 Msa0424930:CDS
TATGGAAGATGAGGATGGTG+AGG 0.620544 3_2:-75265210 None:intergenic
CTTACTGGAGCTCGTCAGCA+CGG 0.621539 3_2:+75269039 Msa0424930:CDS
TGTCCAGCCATGACCTCCAG+GGG 0.633773 3_2:-75269213 None:intergenic
GAATCATAGCCCATCCCAGT+CGG 0.633968 3_2:-75269068 None:intergenic
CAAAGGGGTGTATAGAAAAG+GGG 0.634028 3_2:-75269464 None:intergenic
GTTGTTATGGAAGATGAGGA+TGG 0.634471 3_2:-75265215 None:intergenic
ATACTATACCATGTATTGTG+TGG 0.637794 3_2:+75269273 Msa0424930:three_prime_UTR
AAGGCCAAGATTAAGAGTCA+AGG 0.638913 3_2:+75268987 Msa0424930:CDS
CCTTCATGTATGGTGTGTGG+TGG 0.639025 3_2:-75265308 None:intergenic
CTATTACAAATACATGCCCA+AGG 0.639355 3_2:-75269302 None:intergenic
ATGCATGCAAGCATTGGTAA+GGG 0.640516 3_2:+75267866 Msa0424930:CDS
GTATTGTGTGGTCTAAACCT+TGG 0.642033 3_2:+75269285 Msa0424930:three_prime_UTR
TCCTTTCTTACCCATCTGAG+AGG 0.647484 3_2:-75265545 None:intergenic
CACCAACGACACCACAGTGG+AGG 0.650201 3_2:+75268930 Msa0424930:CDS
AATTGTTGTTATGGAAGATG+AGG 0.653084 3_2:-75265219 None:intergenic
TCATAGCCCATCCCAGTCGG+AGG 0.653601 3_2:-75269065 None:intergenic
GGTCCTTCATGTATGGTGTG+TGG 0.670230 3_2:-75265311 None:intergenic
AGATTGCAAGCACTTGTGAG+GGG 0.683402 3_2:+75267807 Msa0424930:CDS
TTGTGAGGGGACATAATGTG+CGG 0.702353 3_2:+75267820 Msa0424930:CDS
TGACTCATGACAAACACGAG+CGG 0.720335 3_2:+75267922 Msa0424930:CDS
CACCACCAACGACACCACAG+TGG 0.740022 3_2:+75268927 Msa0424930:CDS
GTCCAGCCATGACCTCCAGG+GGG 0.740945 3_2:-75269212 None:intergenic
AGCTAGGTACACCTCCACTG+TGG 0.765897 3_2:-75268941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAATTATTACTATTTA+TGG + chr3_2:75269323-75269342 Msa0424930:three_prime_UTR 10.0%
!!! ACAATCCTATTTAATTTTTA+AGG + chr3_2:75265460-75265479 Msa0424930:intron 15.0%
!!! ATTTGAGTTAAAATTTCTTT+TGG + chr3_2:75265803-75265822 Msa0424930:intron 15.0%
!!! TTTGAGTTAAAATTTCTTTT+GGG + chr3_2:75265804-75265823 Msa0424930:intron 15.0%
!!! TATGAGAAAAATCTATTTTT+TGG - chr3_2:75265984-75266003 None:intergenic 15.0%
!! ATATAATTACATACTGTATA+GGG - chr3_2:75266298-75266317 None:intergenic 15.0%
!! TATGTAATTATATGTGTATA+TGG + chr3_2:75266305-75266324 Msa0424930:intron 15.0%
!! AATATTTGTATTAGATTGTA+CGG + chr3_2:75267622-75267641 Msa0424930:intron 15.0%
!!! TCTATTCATTTTAATTAGAT+GGG - chr3_2:75268154-75268173 None:intergenic 15.0%
!!! TTTTTACAGACAAATATTAA+TGG - chr3_2:75268425-75268444 None:intergenic 15.0%
!! CAAAACTATATTATATATTG+TGG - chr3_2:75268587-75268606 None:intergenic 15.0%
!! GTTTATGTATCTAAATTTGA+GGG - chr3_2:75265387-75265406 None:intergenic 20.0%
!! TGTTTATGTATCTAAATTTG+AGG - chr3_2:75265388-75265407 None:intergenic 20.0%
!! GGAAACCTTAAAAATTAAAT+AGG - chr3_2:75265468-75265487 None:intergenic 20.0%
!! CAAAAAGAAAAAAGAAAGAA+AGG - chr3_2:75265656-75265675 None:intergenic 20.0%
!!! TCTTTTTGAAAACATTTATC+AGG + chr3_2:75265668-75265687 Msa0424930:intron 20.0%
!!! TTCAGTAAACAAACAAATTT+TGG - chr3_2:75265724-75265743 None:intergenic 20.0%
!!! TGACTAAATACTGATTATTA+TGG - chr3_2:75266046-75266065 None:intergenic 20.0%
!! ATAAGTAATGCTACATATTA+TGG + chr3_2:75266142-75266161 Msa0424930:intron 20.0%
!! CATATAATTACATACTGTAT+AGG - chr3_2:75266299-75266318 None:intergenic 20.0%
!! ACTCATAATTAACAATCATT+TGG - chr3_2:75266523-75266542 None:intergenic 20.0%
!! TAAGAAAAAAATGAATAACC+TGG - chr3_2:75268097-75268116 None:intergenic 20.0%
!! TTTGTTAAATACAAGAGAAT+TGG + chr3_2:75268127-75268146 Msa0424930:intron 20.0%
!! TTGTTAAATACAAGAGAATT+GGG + chr3_2:75268128-75268147 Msa0424930:intron 20.0%
!!! CTCTATTCATTTTAATTAGA+TGG - chr3_2:75268155-75268174 None:intergenic 20.0%
!! ATAAAACAAGTAATATGAGT+TGG - chr3_2:75268239-75268258 None:intergenic 20.0%
!!! TATTAATGGTCAATTTGTTA+GGG - chr3_2:75268411-75268430 None:intergenic 20.0%
!!! ATATTAATGGTCAATTTGTT+AGG - chr3_2:75268412-75268431 None:intergenic 20.0%
!! CATGGTATAGTATAATTATA+AGG - chr3_2:75269266-75269285 None:intergenic 20.0%
!! TGAAATCCTAATTGTTGTTA+TGG - chr3_2:75265231-75265250 None:intergenic 25.0%
! GGAAGAAAAATAACATTGAT+TGG - chr3_2:75265695-75265714 None:intergenic 25.0%
!!! ACAAACAAATTTTGGTGAAT+GGG - chr3_2:75265716-75265735 None:intergenic 25.0%
!!! AACAAACAAATTTTGGTGAA+TGG - chr3_2:75265717-75265736 None:intergenic 25.0%
!! AAGCAATTTATGCTTTCTTT+TGG - chr3_2:75266113-75266132 None:intergenic 25.0%
! ATGTTATCCTTTATTGTGAA+AGG - chr3_2:75266175-75266194 None:intergenic 25.0%
! CATTTACTGTACTTATATGT+AGG - chr3_2:75266200-75266219 None:intergenic 25.0%
! TGATTGTTAATTATGAGTGA+AGG + chr3_2:75266525-75266544 Msa0424930:intron 25.0%
! ATTATGAGTGAAGGATTATT+TGG + chr3_2:75266534-75266553 Msa0424930:intron 25.0%
! TGAAATAAATTGTGTTCGTT+TGG + chr3_2:75266736-75266755 Msa0424930:intron 25.0%
! AACAATGACTTAATCTATGT+TGG + chr3_2:75267046-75267065 Msa0424930:intron 25.0%
! ACAATGACTTAATCTATGTT+GGG + chr3_2:75267047-75267066 Msa0424930:intron 25.0%
!! AAGTCTTCTTTTATCTGTTT+TGG + chr3_2:75267371-75267390 Msa0424930:intron 25.0%
! ATGAGTGTATGACATATTTA+TGG - chr3_2:75267467-75267486 None:intergenic 25.0%
! AATCAATGTGACTTTAATGT+TGG - chr3_2:75267569-75267588 None:intergenic 25.0%
!! AATACAAATATTTTCCATGC+AGG - chr3_2:75267614-75267633 None:intergenic 25.0%
!!! ATTAATGGTCAATTTGTTAG+GGG - chr3_2:75268410-75268429 None:intergenic 25.0%
! CAAGCATCAAATATGTTAAA+AGG - chr3_2:75268481-75268500 None:intergenic 25.0%
!! CTTTTAACATATTTGATGCT+TGG + chr3_2:75268479-75268498 Msa0424930:intron 25.0%
! TATCACAATCAAACAATGTT+AGG + chr3_2:75268742-75268761 Msa0424930:CDS 25.0%
! TGAAGAAAAAACAGTTGAAA+TGG + chr3_2:75268821-75268840 Msa0424930:CDS 25.0%
! GACTTAAATCATGAAATTCT+TGG - chr3_2:75268896-75268915 None:intergenic 25.0%
! GGTATAGTATAATTATAAGG+AGG - chr3_2:75269263-75269282 None:intergenic 25.0%
!! GAATCATAATATTCGTTTTC+GGG - chr3_2:75269394-75269413 None:intergenic 25.0%
!! GGAATCATAATATTCGTTTT+CGG - chr3_2:75269395-75269414 None:intergenic 25.0%
! AATTGTTGTTATGGAAGATG+AGG - chr3_2:75265222-75265241 None:intergenic 30.0%
CATCTTCCATAACAACAATT+AGG + chr3_2:75265222-75265241 Msa0424930:five_prime_UTR 30.0%
AACATTCTCTTCGTAACATA+AGG + chr3_2:75265404-75265423 Msa0424930:intron 30.0%
!!! AGTTTTCAAGTCTTCTTCTA+AGG + chr3_2:75265594-75265613 Msa0424930:CDS 30.0%
TCTCATAGACAATAAGAATC+TGG + chr3_2:75265997-75266016 Msa0424930:intron 30.0%
!!! TATGCTTTCTTTTGGTTTCT+TGG - chr3_2:75266105-75266124 None:intergenic 30.0%
! GTTGTAGTTGTTGTCTTTTA+TGG + chr3_2:75266229-75266248 Msa0424930:intron 30.0%
! TCTTTTATGGAACCACATAA+AGG + chr3_2:75266242-75266261 Msa0424930:intron 30.0%
ATGTTAAGTTCACATGATAG+GGG - chr3_2:75266332-75266351 None:intergenic 30.0%
CATGTTAAGTTCACATGATA+GGG - chr3_2:75266333-75266352 None:intergenic 30.0%
ACATGTTAAGTTCACATGAT+AGG - chr3_2:75266334-75266353 None:intergenic 30.0%
! CATGATGGAAATCTAACATT+GGG - chr3_2:75266446-75266465 None:intergenic 30.0%
TAATTAAGTGATTAACCAGC+TGG - chr3_2:75266483-75266502 None:intergenic 30.0%
CATATAATCGTCTATTTGGA+TGG - chr3_2:75267003-75267022 None:intergenic 30.0%
AGTGCATATAATCGTCTATT+TGG - chr3_2:75267007-75267026 None:intergenic 30.0%
! TTTTCACTTTCAGAAGGAAA+AGG + chr3_2:75267074-75267093 Msa0424930:intron 30.0%
CAGATAAAAGAAGACTTACT+AGG - chr3_2:75267368-75267387 None:intergenic 30.0%
ATTAATTCTGTGGTTCAGTA+TGG + chr3_2:75267440-75267459 Msa0424930:intron 30.0%
GTAACTGAAAGTTTGAAAGT+AGG - chr3_2:75267491-75267510 None:intergenic 30.0%
TGACACTTGCAATATATGAT+CGG + chr3_2:75267531-75267550 Msa0424930:intron 30.0%
TAATTGATTGAGTGTGTTCA+GGG - chr3_2:75267664-75267683 None:intergenic 30.0%
TTAATTGATTGAGTGTGTTC+AGG - chr3_2:75267665-75267684 None:intergenic 30.0%
AGCTAATGACAGAAAAACAT+AGG - chr3_2:75267711-75267730 None:intergenic 30.0%
TCAAAGTAGCCAGAAAATTA+AGG + chr3_2:75268004-75268023 Msa0424930:CDS 30.0%
! AATCAGTGTCCTTAATTTTC+TGG - chr3_2:75268016-75268035 None:intergenic 30.0%
!! AAATTAAGGACACTGATTTC+AGG + chr3_2:75268018-75268037 Msa0424930:CDS 30.0%
AAGTTAGTTGCTCAATTTAG+AGG + chr3_2:75268265-75268284 Msa0424930:intron 30.0%
!! CTAAGGAAGTATTATGAAGT+AGG + chr3_2:75268352-75268371 Msa0424930:intron 30.0%
!! TTAATGGTCAATTTGTTAGG+GGG - chr3_2:75268409-75268428 None:intergenic 30.0%
GTTCACTATCATCAACATTT+GGG - chr3_2:75268662-75268681 None:intergenic 30.0%
AAAAACAGTTGAAATGGACA+TGG + chr3_2:75268827-75268846 Msa0424930:CDS 30.0%
ATACTATACCATGTATTGTG+TGG + chr3_2:75269273-75269292 Msa0424930:three_prime_UTR 30.0%
ATTCATGGGACAGTATTGTT+TGG - chr3_2:75265278-75265297 None:intergenic 35.0%
!!! GTGGCATTTTTGAGATTCAT+GGG - chr3_2:75265292-75265311 None:intergenic 35.0%
!! AGATGAATGTTGGTAGTTAC+TGG - chr3_2:75265335-75265354 None:intergenic 35.0%
! GGATTGTTACCTTGTCTTTT+AGG - chr3_2:75265447-75265466 None:intergenic 35.0%
CAATTCAGACAACATGTTAG+AGG - chr3_2:75265489-75265508 None:intergenic 35.0%
GAGACTTCACTTGATCAAAA+TGG - chr3_2:75265757-75265776 None:intergenic 35.0%
TGTAGCATTACTTATACTGC+AGG - chr3_2:75266137-75266156 None:intergenic 35.0%
CAGTGTACCTTTCACAATAA+AGG + chr3_2:75266165-75266184 Msa0424930:intron 35.0%
AGGTAGATTCATCCTTTATG+TGG - chr3_2:75266257-75266276 None:intergenic 35.0%
GATGAATGATGTGATGTGTT+AGG - chr3_2:75266406-75266425 None:intergenic 35.0%
! GCATGATGGAAATCTAACAT+TGG - chr3_2:75266447-75266466 None:intergenic 35.0%
! GATGGATTTGTTTAGCATGA+TGG - chr3_2:75266461-75266480 None:intergenic 35.0%
GAGTGAAGGATTATTTGGAT+CGG + chr3_2:75266539-75266558 Msa0424930:intron 35.0%
TAAACACTGATGAGACTGTT+TGG + chr3_2:75266586-75266605 Msa0424930:intron 35.0%
AAACACTGATGAGACTGTTT+GGG + chr3_2:75266587-75266606 Msa0424930:intron 35.0%
!!! GGACTTTTTTCACTTTCAGA+AGG + chr3_2:75267068-75267087 Msa0424930:intron 35.0%
AGAAGGAAAAGGAAGAGAAT+TGG + chr3_2:75267085-75267104 Msa0424930:intron 35.0%
ATATCTGGTGAACTATATGC+AGG - chr3_2:75267150-75267169 None:intergenic 35.0%
TGATTTCTCTCTTCAGTCAA+GGG - chr3_2:75267201-75267220 None:intergenic 35.0%
ATGATTTCTCTCTTCAGTCA+AGG - chr3_2:75267202-75267221 None:intergenic 35.0%
TACTAGGTATCCTCTATAGT+AGG - chr3_2:75267352-75267371 None:intergenic 35.0%
GCAGCATCATATTAATTCTG+TGG + chr3_2:75267430-75267449 Msa0424930:intron 35.0%
ATCATTGTAGTAAACCTGCA+TGG + chr3_2:75267597-75267616 Msa0424930:intron 35.0%
AGCTGTTCCATTTCGTATAT+AGG + chr3_2:75267749-75267768 Msa0424930:intron 35.0%
TTTGTGTCTAACTTTGTCGT+AGG - chr3_2:75267966-75267985 None:intergenic 35.0%
ACGACAAAGTTAGACACAAA+TGG + chr3_2:75267966-75267985 Msa0424930:CDS 35.0%
CAAAGTTAGACACAAATGGT+TGG + chr3_2:75267970-75267989 Msa0424930:CDS 35.0%
ACACAAATGGTTGGAACTAT+AGG + chr3_2:75267979-75267998 Msa0424930:CDS 35.0%
ACATGGAGCTACAATGAATA+AGG + chr3_2:75268043-75268062 Msa0424930:CDS 35.0%
!! TAATGGTCAATTTGTTAGGG+GGG - chr3_2:75268408-75268427 None:intergenic 35.0%
! TGTGGTAATGATTCTTCAGA+TGG - chr3_2:75268569-75268588 None:intergenic 35.0%
CGTTCACTATCATCAACATT+TGG - chr3_2:75268663-75268682 None:intergenic 35.0%
TCAAACAATGTTAGGCCTTT+AGG + chr3_2:75268750-75268769 Msa0424930:CDS 35.0%
CAAACAATGTTAGGCCTTTA+GGG + chr3_2:75268751-75268770 Msa0424930:CDS 35.0%
ATATCATCAGTGGGTGTATA+TGG - chr3_2:75268798-75268817 None:intergenic 35.0%
TCTTCAGACATATCATCAGT+GGG - chr3_2:75268807-75268826 None:intergenic 35.0%
TTCTTCAGACATATCATCAG+TGG - chr3_2:75268808-75268827 None:intergenic 35.0%
CATGAAATTCTTGGTTCATG+AGG - chr3_2:75268887-75268906 None:intergenic 35.0%
!! TCCCATTAATTTTTGGGCTT+GGG - chr3_2:75269139-75269158 None:intergenic 35.0%
!! ATCCCATTAATTTTTGGGCT+TGG - chr3_2:75269140-75269159 None:intergenic 35.0%
! GGCGAATCCCATTAATTTTT+GGG - chr3_2:75269145-75269164 None:intergenic 35.0%
! AGGCGAATCCCATTAATTTT+TGG - chr3_2:75269146-75269165 None:intergenic 35.0%
! CCTTCAATCTAAACGGATTT+CGG + chr3_2:75269163-75269182 Msa0424930:CDS 35.0%
! CTTCAATCTAAACGGATTTC+GGG + chr3_2:75269164-75269183 Msa0424930:CDS 35.0%
TATTGTGTGGTCTAAACCTT+GGG + chr3_2:75269286-75269305 Msa0424930:three_prime_UTR 35.0%
CTATTACAAATACATGCCCA+AGG - chr3_2:75269305-75269324 None:intergenic 35.0%
TGACAGTGACACAAAACATA+TGG - chr3_2:75269416-75269435 None:intergenic 35.0%
GTTGTTATGGAAGATGAGGA+TGG - chr3_2:75265218-75265237 None:intergenic 40.0%
!!! GGTGGCATTTTTGAGATTCA+TGG - chr3_2:75265293-75265312 None:intergenic 40.0%
AGTTACTGGTCCTTCATGTA+TGG - chr3_2:75265321-75265340 None:intergenic 40.0%
!! CCTGTTTCTGAGATGAATGT+TGG - chr3_2:75265345-75265364 None:intergenic 40.0%
CCAACATTCATCTCAGAAAC+AGG + chr3_2:75265342-75265361 Msa0424930:five_prime_UTR 40.0%
CGTGTATGTCCTAAAAGACA+AGG + chr3_2:75265435-75265454 Msa0424930:intron 40.0%
CTCAACTCTACAAGAGAACA+AGG + chr3_2:75265618-75265637 Msa0424930:CDS 40.0%
GATGAATCTACCTTGCCTTT+AGG + chr3_2:75266264-75266283 Msa0424930:intron 40.0%
TACATACTGTATAGGGTTGC+TGG - chr3_2:75266291-75266310 None:intergenic 40.0%
TAAGTGATTAACCAGCTGGA+TGG - chr3_2:75266479-75266498 None:intergenic 40.0%
! GACTAATTCCATTAGCTCTC+TGG + chr3_2:75266648-75266667 Msa0424930:intron 40.0%
TAAGCTATCCAGAGAGCTAA+TGG - chr3_2:75266659-75266678 None:intergenic 40.0%
TCACCAGATATCACGAATGA+AGG + chr3_2:75267159-75267178 Msa0424930:CDS 40.0%
CTTCCTTCATTCGTGATATC+TGG - chr3_2:75267165-75267184 None:intergenic 40.0%
AGGTCATGGACATAACTCTA+AGG + chr3_2:75267299-75267318 Msa0424930:CDS 40.0%
CTCATTCAGTCCTACTATAG+AGG + chr3_2:75267339-75267358 Msa0424930:CDS 40.0%
!! ATGCATGCAAGCATTGGTAA+GGG + chr3_2:75267866-75267885 Msa0424930:CDS 40.0%
CGTGTTTGTCATGAGTCAAT+TGG - chr3_2:75267920-75267939 None:intergenic 40.0%
!! GACACTGATTTCAGGAAACA+TGG + chr3_2:75268026-75268045 Msa0424930:CDS 40.0%
! GCTTGGTGACTACACAAAAA+CGG + chr3_2:75268496-75268515 Msa0424930:intron 40.0%
GCATAGAAAACCACATGCAA+AGG + chr3_2:75268535-75268554 Msa0424930:intron 40.0%
! GGAATTGATTCCTTTGCATG+TGG - chr3_2:75268548-75268567 None:intergenic 40.0%
CAACCAGTTCCAATCCAATT+GGG - chr3_2:75268709-75268728 None:intergenic 40.0%
!! AATGTTAGGCCTTTAGGGTT+GGG + chr3_2:75268756-75268775 Msa0424930:CDS 40.0%
! TTTGCATGGATTGAGTCTCT+TGG - chr3_2:75268858-75268877 None:intergenic 40.0%
AGACTCAATCCATGCAAACA+TGG + chr3_2:75268860-75268879 Msa0424930:CDS 40.0%
GACTCAATCCATGCAAACAT+GGG + chr3_2:75268861-75268880 Msa0424930:CDS 40.0%
AAGGCCAAGATTAAGAGTCA+AGG + chr3_2:75268987-75269006 Msa0424930:CDS 40.0%
AGCCCAAGCCCAAAAATTAA+TGG + chr3_2:75269134-75269153 Msa0424930:CDS 40.0%
GCCCAAGCCCAAAAATTAAT+GGG + chr3_2:75269135-75269154 Msa0424930:CDS 40.0%
GGATTCGCCTTCAATCTAAA+CGG + chr3_2:75269156-75269175 Msa0424930:CDS 40.0%
CCGAAATCCGTTTAGATTGA+AGG - chr3_2:75269166-75269185 None:intergenic 40.0%
GGTTTAGACCACACAATACA+TGG - chr3_2:75269284-75269303 None:intergenic 40.0%
GTATTGTGTGGTCTAAACCT+TGG + chr3_2:75269285-75269304 Msa0424930:three_prime_UTR 40.0%
!!! ATTCGTTTTCGGGTGTCTTT+TGG - chr3_2:75269384-75269403 None:intergenic 40.0%
! GTGTCACTGTCACTTAGAAA+AGG + chr3_2:75269424-75269443 Msa0424930:three_prime_UTR 40.0%
TATGGAAGATGAGGATGGTG+AGG - chr3_2:75265213-75265232 None:intergenic 45.0%
ACATAGCCTTTCCTCTCAGA+TGG + chr3_2:75265534-75265553 Msa0424930:exon 45.0%
CATAGCCTTTCCTCTCAGAT+GGG + chr3_2:75265535-75265554 Msa0424930:exon 45.0%
TCTTACCCATCTGAGAGGAA+AGG - chr3_2:75265543-75265562 None:intergenic 45.0%
TCCTCTCAGATGGGTAAGAA+AGG + chr3_2:75265544-75265563 Msa0424930:exon 45.0%
TCCTTTCTTACCCATCTGAG+AGG - chr3_2:75265548-75265567 None:intergenic 45.0%
TGGGTAAGAAAGGAAGCAGT+TGG + chr3_2:75265554-75265573 Msa0424930:CDS 45.0%
TATAGGGTTGCTGGTCCTAA+AGG - chr3_2:75266282-75266301 None:intergenic 45.0%
GCTAAACAAATCCATCCAGC+TGG + chr3_2:75266465-75266484 Msa0424930:intron 45.0%
!! TTCAGTCAAGGGTGTTGATG+TGG - chr3_2:75267190-75267209 None:intergenic 45.0%
AGCTGCTAGAGTTGTGAGAT+TGG + chr3_2:75267275-75267294 Msa0424930:CDS 45.0%
CGTCGAGCCTATATACGAAA+TGG - chr3_2:75267759-75267778 None:intergenic 45.0%
TGAGATTGCAAGCACTTGTG+AGG + chr3_2:75267805-75267824 Msa0424930:CDS 45.0%
GAGATTGCAAGCACTTGTGA+GGG + chr3_2:75267806-75267825 Msa0424930:CDS 45.0%
AGATTGCAAGCACTTGTGAG+GGG + chr3_2:75267807-75267826 Msa0424930:CDS 45.0%
TTGTGAGGGGACATAATGTG+CGG + chr3_2:75267820-75267839 Msa0424930:CDS 45.0%
AATGCGATGCATGCAAGCAT+TGG + chr3_2:75267860-75267879 Msa0424930:CDS 45.0%
!! GATGCATGCAAGCATTGGTA+AGG + chr3_2:75267865-75267884 Msa0424930:CDS 45.0%
TGACTCATGACAAACACGAG+CGG + chr3_2:75267922-75267941 Msa0424930:CDS 45.0%
ACCTTTCATGTAGATCCCGA+TGG + chr3_2:75268301-75268320 Msa0424930:intron 45.0%
ACCATCGGGATCTACATGAA+AGG - chr3_2:75268305-75268324 None:intergenic 45.0%
GACTACATCAGTACACCATC+GGG - chr3_2:75268319-75268338 None:intergenic 45.0%
CGACTACATCAGTACACCAT+CGG - chr3_2:75268320-75268339 None:intergenic 45.0%
! CGATGGTGTACTGATGTAGT+CGG + chr3_2:75268318-75268337 Msa0424930:intron 45.0%
TACTGATGTAGTCGGTCGTT+AGG + chr3_2:75268326-75268345 Msa0424930:intron 45.0%
GTGAAAGAGCCCAATTGGAT+TGG + chr3_2:75268697-75268716 Msa0424930:CDS 45.0%
CCAACCAGTTCCAATCCAAT+TGG - chr3_2:75268710-75268729 None:intergenic 45.0%
! CCAATTGGATTGGAACTGGT+TGG + chr3_2:75268707-75268726 Msa0424930:CDS 45.0%
!! CAATGTTAGGCCTTTAGGGT+TGG + chr3_2:75268755-75268774 Msa0424930:CDS 45.0%
!! ATGTTAGGCCTTTAGGGTTG+GGG + chr3_2:75268757-75268776 Msa0424930:CDS 45.0%
ATCAGTGGGTGTATATGGTG+GGG - chr3_2:75268793-75268812 None:intergenic 45.0%
CATCAGTGGGTGTATATGGT+GGG - chr3_2:75268794-75268813 None:intergenic 45.0%
TCATCAGTGGGTGTATATGG+TGG - chr3_2:75268795-75268814 None:intergenic 45.0%
!! CGTTGGTGGTGTTTAGAGAT+AGG - chr3_2:75268918-75268937 None:intergenic 45.0%
! TGGAGGTGTACCTAGCTATA+TGG + chr3_2:75268947-75268966 Msa0424930:CDS 45.0%
TGGGCCTTGACTCTTAATCT+TGG - chr3_2:75268994-75269013 None:intergenic 45.0%
!! TATGATTCATCTGGCTCTGG+TGG + chr3_2:75269083-75269102 Msa0424930:CDS 45.0%
!! ATGATTCATCTGGCTCTGGT+GGG + chr3_2:75269084-75269103 Msa0424930:CDS 45.0%
AGTAATTGGATGAGCAGCAG+TGG - chr3_2:75269111-75269130 None:intergenic 45.0%
!! TTTCGGGTGTCTTTTGGTGT+GGG - chr3_2:75269378-75269397 None:intergenic 45.0%
!!! TTTTCGGGTGTCTTTTGGTG+TGG - chr3_2:75269379-75269398 None:intergenic 45.0%
CCTTCATGTATGGTGTGTGG+TGG - chr3_2:75265311-75265330 None:intergenic 50.0%
CCACCACACACCATACATGA+AGG + chr3_2:75265308-75265327 Msa0424930:five_prime_UTR 50.0%
GGTCCTTCATGTATGGTGTG+TGG - chr3_2:75265314-75265333 None:intergenic 50.0%
CTGCGAGAGCTTACGGAAAT+GGG - chr3_2:75266939-75266958 None:intergenic 50.0%
TCTGCGAGAGCTTACGGAAA+TGG - chr3_2:75266940-75266959 None:intergenic 50.0%
AGACTGTCTGCGAGAGCTTA+CGG - chr3_2:75266946-75266965 None:intergenic 50.0%
!! AGCAGCAGAGGAGGTATCTA+TGG + chr3_2:75267116-75267135 Msa0424930:CDS 50.0%
GCTAGAGTTGTGAGATTGGC+AGG + chr3_2:75267279-75267298 Msa0424930:CDS 50.0%
GTTGTGAGATTGGCAGGTCA+TGG + chr3_2:75267285-75267304 Msa0424930:CDS 50.0%
!! GCAAGCATTGGTAAGGGTTC+AGG + chr3_2:75267872-75267891 Msa0424930:CDS 50.0%
TCCATACGCTTTCAACTGCC+AGG + chr3_2:75268076-75268095 Msa0424930:CDS 50.0%
! ACCTGGCAGTTGAAAGCGTA+TGG - chr3_2:75268080-75268099 None:intergenic 50.0%
AGTCGGTCGTTAGGATGCTA+AGG + chr3_2:75268335-75268354 Msa0424930:intron 50.0%
!! TGGTCAATTTGTTAGGGGGG+TGG - chr3_2:75268405-75268424 None:intergenic 50.0%
TGAGCGTGAAAGAGCCCAAT+TGG + chr3_2:75268692-75268711 Msa0424930:CDS 50.0%
! GAGCCCAATTGGATTGGAAC+TGG + chr3_2:75268703-75268722 Msa0424930:CDS 50.0%
ATTGGAACTGGTTGGAGCGT+TGG + chr3_2:75268715-75268734 Msa0424930:CDS 50.0%
! GTATATGGTGGGGTCTCAAG+TGG - chr3_2:75268783-75268802 None:intergenic 50.0%
TCATGAGGCCCATGTTTGCA+TGG - chr3_2:75268872-75268891 None:intergenic 50.0%
TGTGTTGGGGCCATATAGCT+AGG - chr3_2:75268960-75268979 None:intergenic 50.0%
TGGCCTTTGCAGACTGTGTT+GGG - chr3_2:75268974-75268993 None:intergenic 50.0%
! TTGGCCTTTGCAGACTGTGT+TGG - chr3_2:75268975-75268994 None:intergenic 50.0%
GTCAAGGCCCATCAAAGCAT+CGG + chr3_2:75269003-75269022 Msa0424930:CDS 50.0%
! TCAAGGCCCATCAAAGCATC+GGG + chr3_2:75269004-75269023 Msa0424930:CDS 50.0%
GAATCATAGCCCATCCCAGT+CGG - chr3_2:75269071-75269090 None:intergenic 50.0%
!! GGGATGGGCTATGATTCATC+TGG + chr3_2:75269074-75269093 Msa0424930:CDS 50.0%
! GGCTATGATTCATCTGGCTC+TGG + chr3_2:75269080-75269099 Msa0424930:CDS 50.0%
!! TGATTCATCTGGCTCTGGTG+GGG + chr3_2:75269085-75269104 Msa0424930:CDS 50.0%
GGGCTTGGGCTTCTAGTAAT+TGG - chr3_2:75269125-75269144 None:intergenic 50.0%
! TCTAAACGGATTTCGGGTGC+TGG + chr3_2:75269170-75269189 Msa0424930:CDS 50.0%
!! TTCGGGTGTCTTTTGGTGTG+GGG - chr3_2:75269377-75269396 None:intergenic 50.0%
GGTTGCTGGTCCTAAAGGCA+AGG - chr3_2:75266277-75266296 None:intergenic 55.0%
TTGGCAGCATGAAGCAGCAG+AGG + chr3_2:75267104-75267123 Msa0424930:CDS 55.0%
TTCAGCTGCTGCTGCAGCAT+AGG - chr3_2:75267232-75267251 None:intergenic 55.0%
ACGTGCACTGCGTGCTTTGA+AGG + chr3_2:75267776-75267795 Msa0424930:CDS 55.0%
! CGTGCACTGCGTGCTTTGAA+GGG + chr3_2:75267777-75267796 Msa0424930:CDS 55.0%
CAAACACGAGCGGACAGTAG+AGG + chr3_2:75267932-75267951 Msa0424930:CDS 55.0%
TCAAGTGGCCCCAACCCTAA+AGG - chr3_2:75268768-75268787 None:intergenic 55.0%
AGCTAGGTACACCTCCACTG+TGG - chr3_2:75268944-75268963 None:intergenic 55.0%
GGCCTTTGCAGACTGTGTTG+GGG - chr3_2:75268973-75268992 None:intergenic 55.0%
ACGACGCCCGATGCTTTGAT+GGG - chr3_2:75269013-75269032 None:intergenic 55.0%
AACGACGCCCGATGCTTTGA+TGG - chr3_2:75269014-75269033 None:intergenic 55.0%
!! TCAAAGCATCGGGCGTCGTT+TGG + chr3_2:75269014-75269033 Msa0424930:CDS 55.0%
! GGGCGTCGTTTGGATCTTAC+TGG + chr3_2:75269024-75269043 Msa0424930:CDS 55.0%
CTTACTGGAGCTCGTCAGCA+CGG + chr3_2:75269039-75269058 Msa0424930:CDS 55.0%
!! GATTTCGGGTGCTGGTGTTG+AGG + chr3_2:75269178-75269197 Msa0424930:CDS 55.0%
TTGTCCAGCCATGACCTCCA+GGG - chr3_2:75269217-75269236 None:intergenic 55.0%
GCAGCATGAAGCAGCAGAGG+AGG + chr3_2:75267107-75267126 Msa0424930:CDS 60.0%
AGCAGCAGCTGAAGCTGCAG+TGG + chr3_2:75267239-75267258 Msa0424930:CDS 60.0%
AGCTGAAGCTGCAGTGGCTG+CGG + chr3_2:75267245-75267264 Msa0424930:CDS 60.0%
CACCACCAACGACACCACAG+TGG + chr3_2:75268927-75268946 Msa0424930:CDS 60.0%
!! CTCCACTGTGGTGTCGTTGG+TGG - chr3_2:75268932-75268951 None:intergenic 60.0%
CACCAACGACACCACAGTGG+AGG + chr3_2:75268930-75268949 Msa0424930:CDS 60.0%
!! CACCTCCACTGTGGTGTCGT+TGG - chr3_2:75268935-75268954 None:intergenic 60.0%
GGCCCCAACACAGTCTGCAA+AGG + chr3_2:75268968-75268987 Msa0424930:CDS 60.0%
TCATAGCCCATCCCAGTCGG+AGG - chr3_2:75269068-75269087 None:intergenic 60.0%
!! CGGGTGCTGGTGTTGAGGAT+TGG + chr3_2:75269183-75269202 Msa0424930:CDS 60.0%
!! GAGGATTGGCCAATTCCCCC+TGG + chr3_2:75269197-75269216 Msa0424930:CDS 60.0%
! GATTGGCCAATTCCCCCTGG+AGG + chr3_2:75269200-75269219 Msa0424930:CDS 60.0%
CCATGACCTCCAGGGGGAAT+TGG - chr3_2:75269209-75269228 None:intergenic 60.0%
CCAATTCCCCCTGGAGGTCA+TGG + chr3_2:75269206-75269225 Msa0424930:CDS 60.0%
TGTCCAGCCATGACCTCCAG+GGG - chr3_2:75269216-75269235 None:intergenic 60.0%
CTTGTCCAGCCATGACCTCC+AGG - chr3_2:75269218-75269237 None:intergenic 60.0%
TCAGCACGGAGTCCTCCGAC+TGG + chr3_2:75269053-75269072 Msa0424930:CDS 65.0%
CAGCACGGAGTCCTCCGACT+GGG + chr3_2:75269054-75269073 Msa0424930:CDS 65.0%
ACGGAGTCCTCCGACTGGGA+TGG + chr3_2:75269058-75269077 Msa0424930:CDS 65.0%
CGGAGTCCTCCGACTGGGAT+GGG + chr3_2:75269059-75269078 Msa0424930:CDS 65.0%
TTCCCCCTGGAGGTCATGGC+TGG + chr3_2:75269210-75269229 Msa0424930:CDS 65.0%
GTCCAGCCATGACCTCCAGG+GGG - chr3_2:75269215-75269234 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 75265159 75269478 75265159 ID=Msa0424930;Name=Msa0424930
chr3_2 mRNA 75265159 75269478 75265159 ID=Msa0424930-mRNA-1;Parent=Msa0424930;Name=Msa0424930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=226|1|1|1|0.75|0.6|5|231|437
chr3_2 exon 75265159 75265363 75265159 ID=Msa0424930-mRNA-1:exon:19160;Parent=Msa0424930-mRNA-1
chr3_2 exon 75265532 75265639 75265532 ID=Msa0424930-mRNA-1:exon:19161;Parent=Msa0424930-mRNA-1
chr3_2 exon 75267087 75267368 75267087 ID=Msa0424930-mRNA-1:exon:19162;Parent=Msa0424930-mRNA-1
chr3_2 exon 75267771 75268097 75267771 ID=Msa0424930-mRNA-1:exon:19163;Parent=Msa0424930-mRNA-1
chr3_2 exon 75268630 75269478 75268630 ID=Msa0424930-mRNA-1:exon:19164;Parent=Msa0424930-mRNA-1
chr3_2 five_prime_UTR 75265159 75265363 75265159 ID=Msa0424930-mRNA-1:five_prime_utr;Parent=Msa0424930-mRNA-1
chr3_2 five_prime_UTR 75265532 75265552 75265532 ID=Msa0424930-mRNA-1:five_prime_utr;Parent=Msa0424930-mRNA-1
chr3_2 CDS 75265553 75265639 75265553 ID=Msa0424930-mRNA-1:cds;Parent=Msa0424930-mRNA-1
chr3_2 CDS 75267087 75267368 75267087 ID=Msa0424930-mRNA-1:cds;Parent=Msa0424930-mRNA-1
chr3_2 CDS 75267771 75268097 75267771 ID=Msa0424930-mRNA-1:cds;Parent=Msa0424930-mRNA-1
chr3_2 CDS 75268630 75269247 75268630 ID=Msa0424930-mRNA-1:cds;Parent=Msa0424930-mRNA-1
chr3_2 three_prime_UTR 75269248 75269478 75269248 ID=Msa0424930-mRNA-1:three_prime_utr;Parent=Msa0424930-mRNA-1
Gene Sequence

>Msa0424930

ATGGGTAAGAAAGGAAGCAGTTGGTTCTCATCTGTGAAGAAAGTTTTCAAGTCTTCTTCTAAGGACTCAACTCTACAAGAGAACAAGAAGGAAAAGGAAGAGAATTGGCAGCATGAAGCAGCAGAGGAGGTATCTATGGAGCATTTTCCTGCATATAGTTCACCAGATATCACGAATGAAGGAAGCACCACATCAACACCCTTGACTGAAGAGAGAAATCATGCAATTGCCTATGCTGCAGCAGCAGCTGAAGCTGCAGTGGCTGCGGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCAGGTCATGGACATAACTCTAAGGTTGAAAAAGCAGCAATACTCATTCAGTCCTACTATAGAGGATACCTAGCTCGACGTGCACTGCGTGCTTTGAAGGGATTAGTGAGATTGCAAGCACTTGTGAGGGGACATAATGTGCGGAAGCAAGCACAGATGACAATGCGATGCATGCAAGCATTGGTAAGGGTTCAGGCAAGAGTAAGAGCTCGCAGACTCCAATTGACTCATGACAAACACGAGCGGACAGTAGAGGAACAACATCCTACGACAAAGTTAGACACAAATGGTTGGAACTATAGGCGTCAAAGTAGCCAGAAAATTAAGGACACTGATTTCAGGAAACATGGAGCTACAATGAATAAGGAGAAAGCTCTTCCATACGCTTTCAACTGCCAGCAACTGCAGAAGCAATATTTGCACATAGACCCAAATGTTGATGATAGTGAACGTTACAGCAATGAGCGTGAAAGAGCCCAATTGGATTGGAACTGGTTGGAGCGTTGGATGTTATCACAATCAAACAATGTTAGGCCTTTAGGGTTGGGGCCACTTGAGACCCCACCATATACACCCACTGATGATATGTCTGAAGAAAAAACAGTTGAAATGGACATGGTTGCACCAAGAGACTCAATCCATGCAAACATGGGCCTCATGAACCAAGAATTTCATGATTTAAGTCCTATCTCTAAACACCACCAACGACACCACAGTGGAGGTGTACCTAGCTATATGGCCCCAACACAGTCTGCAAAGGCCAAGATTAAGAGTCAAGGCCCATCAAAGCATCGGGCGTCGTTTGGATCTTACTGGAGCTCGTCAGCACGGAGTCCTCCGACTGGGATGGGCTATGATTCATCTGGCTCTGGTGGGGCCACTGCTGCTCATCCAATTACTAGAAGCCCAAGCCCAAAAATTAATGGGATTCGCCTTCAATCTAAACGGATTTCGGGTGCTGGTGTTGAGGATTGGCCAATTCCCCCTGGAGGTCATGGCTGGACAAGATTTGATTGA
Protein sequence

>Msa0424930

MGKKGSSWFSSVKKVFKSSSKDSTLQENKKEKEENWQHEAAEEVSMEHFPAYSSPDITNEGSTTSTPLTEERNHAIAYAAAAAEAAVAAAQAAARVVRLAGHGHNSKVEKAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLTHDKHERTVEEQHPTTKLDTNGWNYRRQSSQKIKDTDFRKHGATMNKEKALPYAFNCQQLQKQYLHIDPNVDDSERYSNERERAQLDWNWLERWMLSQSNNVRPLGLGPLETPPYTPTDDMSEEKTVEMDMVAPRDSIHANMGLMNQEFHDLSPISKHHQRHHSGGVPSYMAPTQSAKAKIKSQGPSKHRASFGSYWSSSARSPPTGMGYDSSGSGGATAAHPITRSPSPKINGIRLQSKRISGAGVEDWPIPPGGHGWTRFD*