AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1020160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1020160 MtrunA17_Chr7g0271591 91.005 378 4 1 1 348 1 378 0.0 686
Msa1020160 MtrunA17_Chr1g0185571 32.635 334 181 8 45 341 66 392 3.93e-44 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1020160 AT1G09340.1 78.723 376 50 1 1 346 1 376 0.0 583
Msa1020160 AT1G09340.2 80.233 344 38 1 33 346 34 377 0.0 556
Msa1020160 AT3G63140.1 32.628 331 177 8 49 341 75 397 3.19e-45 159

Find 94 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATCAAAGGATGTTAAT+TGG 0.201636 7_1:+42710280 Msa1020160:CDS
TTTCCCTTGTGCCTGCTCTT+AGG 0.208932 7_1:-42710237 None:intergenic
TCAACAGATGATATAATTCT+TGG 0.237761 7_1:+42711594 Msa1020160:CDS
ATAAGGCCAGTTTATATCTA+TGG 0.260089 7_1:+42710309 Msa1020160:CDS
GACAAATATGTCACATTTGA+TGG 0.302971 7_1:+42710928 Msa1020160:CDS
TTCCCTTGTGCCTGCTCTTA+GGG 0.306111 7_1:-42710236 None:intergenic
GATGTTGTTTATGACATTAA+TGG 0.315079 7_1:+42709530 Msa1020160:CDS
CACCAAGAAAATCCTCATAA+TGG 0.331776 7_1:+42709105 Msa1020160:CDS
ATTGGATGCTCTGCCTAATC+TGG 0.333691 7_1:+42709710 Msa1020160:CDS
GCCACCAATCTTGCCATGTT+TGG 0.337037 7_1:-42708648 None:intergenic
AAAAGTTGTGAAATGTTCAT+TGG 0.344253 7_1:+42711726 Msa1020160:three_prime_UTR
ATGTTAATTGGACTTCTATA+AGG 0.345137 7_1:+42710292 Msa1020160:CDS
TATATCATCTGTTGAGAAAT+CGG 0.357749 7_1:-42711586 None:intergenic
ATTAGGCAGAGCATCCAATA+TGG 0.360176 7_1:-42709706 None:intergenic
GAGACAATTAAAGACCCTTT+TGG 0.363380 7_1:-42709073 None:intergenic
CTTGGGTTAGAACCTGACTA+TGG 0.370130 7_1:+42711498 Msa1020160:CDS
CCTGAGCCGGGAATAGGAAT+TGG 0.370539 7_1:-42710390 None:intergenic
AAGACTTCAAACTCAAATTC+AGG 0.384461 7_1:+42708734 Msa1020160:CDS
TCTTCTCTTTCTGATTTCAA+TGG 0.386606 7_1:+42708708 Msa1020160:CDS
ACAGCTTACTGTTCCAGATT+AGG 0.389740 7_1:-42709723 None:intergenic
CCTGACTATGGGCTTGTAGA+AGG 0.391456 7_1:+42711510 Msa1020160:CDS
TTTATTTACTGCTCTTCTGC+TGG 0.399157 7_1:+42709970 Msa1020160:CDS
TGTATTCCTGAGCCGGGAAT+AGG 0.399617 7_1:-42710396 None:intergenic
GATGTTGAATATCTGCTTGC+TGG 0.402494 7_1:-42710899 None:intergenic
AACGGTCCATAGATATAAAC+TGG 0.409144 7_1:-42710315 None:intergenic
TTTGGTTGTGAGGTGTGTAT+AGG 0.411514 7_1:-42708630 None:intergenic
CCTGGCAATTGTTGAGTGAT+AGG 0.412323 7_1:-42709303 None:intergenic
ACCAAGAAAATCCTCATAAT+GGG 0.424978 7_1:+42709106 Msa1020160:CDS
ACAACCAAACATGGCAAGAT+TGG 0.427160 7_1:+42708644 Msa1020160:exon
TCTTATCGCAACATAATAAG+AGG 0.445723 7_1:+42708570 Msa1020160:five_prime_UTR
AACACAACTTGGCCATGTTA+AGG 0.456532 7_1:+42710422 Msa1020160:CDS
TTGAGAAATCGGCCTCTTTG+CGG 0.457734 7_1:-42711575 None:intergenic
TGTTATCTGTATTCCTGAGC+CGG 0.460045 7_1:-42710403 None:intergenic
ATGGGAGGTACTAGATTCAT+TGG 0.465582 7_1:+42709124 Msa1020160:CDS
AGAAAGTTTGTTGCAATCAA+AGG 0.466291 7_1:+42710269 Msa1020160:CDS
AATGAAAGGCTGTGGATTGA+AGG 0.467137 7_1:+42708522 Msa1020160:five_prime_UTR
GAGAAGGCAAAGAGTGTGCT+TGG 0.468611 7_1:+42711480 Msa1020160:CDS
GAAGGTTCTTGGAAATGAAA+AGG 0.475800 7_1:+42710876 Msa1020160:CDS
GATTCGTACAACCTGGACTT+TGG 0.476902 7_1:+42711540 Msa1020160:CDS
CTGAGCCGGGAATAGGAATT+GGG 0.478279 7_1:-42710389 None:intergenic
AGAAGAAGTTGAGCCCATAT+TGG 0.478482 7_1:+42709692 Msa1020160:CDS
AAGCAGATATTCAACATCTC+AGG 0.480050 7_1:+42710904 Msa1020160:CDS
TCTAGGCAACTTGTCAAAGA+AGG 0.493271 7_1:+42709157 Msa1020160:CDS
ATCTAGTACCTCCCATTATG+AGG 0.496492 7_1:-42709117 None:intergenic
CCTTCTACAAGCCCATAGTC+AGG 0.501301 7_1:-42711510 None:intergenic
TCATAGATCTTGCATTTGAA+AGG 0.505334 7_1:+42709455 Msa1020160:intron
TCTTGCCATGTTTGGTTGTG+AGG 0.506728 7_1:-42708640 None:intergenic
CCAATTCCTATTCCCGGCTC+AGG 0.512651 7_1:+42710390 Msa1020160:CDS
TCTTGCATTTGAAAGGAGAC+AGG 0.513755 7_1:+42709462 Msa1020160:CDS
TTTCTTTGCATCAGTGGAGA+AGG 0.513847 7_1:+42711464 Msa1020160:CDS
GGCGACCGGCTTTCAATCTG+TGG 0.517412 7_1:-42710368 None:intergenic
GCAGCATTTCTTTGCATCAG+TGG 0.519599 7_1:+42711458 Msa1020160:intron
GGAAAGATAGTTGACTCTGT+TGG 0.532531 7_1:-42708674 None:intergenic
AGGAGGGAAATGAAAGGCTG+TGG 0.536427 7_1:+42708514 Msa1020160:five_prime_UTR
TATTATGTTGCGATAAGACT+AGG 0.543584 7_1:-42708565 None:intergenic
GTTATCTGTATTCCTGAGCC+GGG 0.543891 7_1:-42710402 None:intergenic
TACAACCTGGACTTTGGTAG+AGG 0.545552 7_1:+42711546 Msa1020160:CDS
ATGAAAGGCTGTGGATTGAA+GGG 0.546104 7_1:+42708523 Msa1020160:five_prime_UTR
ACCAAACATGGCAAGATTGG+TGG 0.546152 7_1:+42708647 Msa1020160:exon
TTAGGCAGAGCATCCAATAT+GGG 0.549553 7_1:-42709705 None:intergenic
GGGAATAGGAATTGGGCGAC+CGG 0.549653 7_1:-42710382 None:intergenic
CTGTGGATTGAAGGGAATTG+AGG 0.551893 7_1:+42708531 Msa1020160:five_prime_UTR
TTGGGTTAGAACCTGACTAT+GGG 0.553185 7_1:+42711499 Msa1020160:CDS
TCAGAAAGAGAAGAAGCTAA+AGG 0.564522 7_1:-42708699 None:intergenic
AAGTTCCTCTACCAAAGTCC+AGG 0.565993 7_1:-42711551 None:intergenic
TAGGTAACTTTATTTACAAG+AGG 0.566421 7_1:+42709273 Msa1020160:intron
TGGATTGAAGGGAATTGAGG+TGG 0.575121 7_1:+42708534 Msa1020160:five_prime_UTR
ATTGAAGGGAATTGAGGTGG+AGG 0.578640 7_1:+42708537 Msa1020160:five_prime_UTR
ACACACCTCACAACCAAACA+TGG 0.584858 7_1:+42708635 Msa1020160:exon
AAATCTAGTCTCTCAGCAGA+AGG 0.585063 7_1:+42709503 Msa1020160:CDS
AGAAGGCAAAGAGTGTGCTT+GGG 0.585599 7_1:+42711481 Msa1020160:CDS
TCAACAGGGTTGTAATTCAA+CGG 0.586816 7_1:-42710333 None:intergenic
TAGAGGAACTTTCCGCAAAG+AGG 0.588443 7_1:+42711563 Msa1020160:CDS
ATGCAGTTGACCCTAAGAGC+AGG 0.590626 7_1:+42710226 Msa1020160:CDS
CCTATCACTCAACAATTGCC+AGG 0.592614 7_1:+42709303 Msa1020160:CDS
GAAAGAGAAGAAGCTAAAGG+AGG 0.592682 7_1:-42708696 None:intergenic
TGACCCTAAGAGCAGGCACA+AGG 0.597458 7_1:+42710233 Msa1020160:CDS
AAAGAGAAGAAGCTAAAGGA+GGG 0.599842 7_1:-42708695 None:intergenic
AAGTCAGTGTCTGATTCACC+TGG 0.605373 7_1:-42709321 None:intergenic
GGCATACGTTTCAGGACGAG+AGG 0.608829 7_1:+42709668 Msa1020160:intron
ATTACAACCCTGTTGAAGAG+TGG 0.609313 7_1:+42710340 Msa1020160:CDS
ATTAGCAAAAGCATGTGCTA+AGG 0.614920 7_1:+42710951 Msa1020160:CDS
GTGAAATGTTCATTGGATTG+CGG 0.623412 7_1:+42711733 Msa1020160:three_prime_UTR
ACTTGTCAAAGAAGGTCACC+AGG 0.624824 7_1:+42709165 Msa1020160:CDS
GCATTTGAAAGGAGACAGGA+AGG 0.625083 7_1:+42709466 Msa1020160:CDS
ATTAAACTGACCTCGGCGTG+AGG 0.631201 7_1:-42710018 None:intergenic
GGAATACAGATAACACAACT+TGG 0.631393 7_1:+42710411 Msa1020160:CDS
TCTTACAGATTCGTACAACC+TGG 0.632752 7_1:+42711533 Msa1020160:CDS
AAGAAAATCCTCATAATGGG+AGG 0.637190 7_1:+42709109 Msa1020160:CDS
TTCAATACATAAAACTAACA+TGG 0.651115 7_1:+42711796 Msa1020160:three_prime_UTR
AAAAGAAGGAGGGAAATGAA+AGG 0.652361 7_1:+42708508 None:intergenic
ATTACATTCATACCTTAACA+TGG 0.662084 7_1:-42710434 None:intergenic
GACCCTAAGAGCAGGCACAA+GGG 0.675285 7_1:+42710234 Msa1020160:CDS
TGATTTATTACCTCACGCCG+AGG 0.684255 7_1:+42710008 Msa1020160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACATTATTTATTTC+CGG - chr7_1:42709222-42709241 None:intergenic 10.0%
!!! AATAAATAATGTATTTTTGA+AGG + chr7_1:42709224-42709243 Msa1020160:intron 10.0%
!! ACATTTAATTATAAACAAAA+TGG - chr7_1:42709933-42709952 None:intergenic 10.0%
!!! TTTTGTTTATAATTAAATGT+TGG + chr7_1:42709933-42709952 Msa1020160:intron 10.0%
!! TAGTAAAACAAAATATAATA+TGG - chr7_1:42710112-42710131 None:intergenic 10.0%
!! AATATAAACAAAACTAATAA+AGG - chr7_1:42710179-42710198 None:intergenic 10.0%
!! ATCTTTCAAAAAAAAAAAAA+AGG + chr7_1:42710455-42710474 Msa1020160:intron 10.0%
!! TAATTTAACATAACAAATGT+CGG + chr7_1:42708901-42708920 Msa1020160:intron 15.0%
!!! AAATAACTTGTAAATTTGAT+AGG + chr7_1:42709254-42709273 Msa1020160:intron 15.0%
!!! TCAAATTCAATGATTTTATT+TGG + chr7_1:42709647-42709666 Msa1020160:intron 15.0%
!!! AAATAAGGAAACAAATTTTT+AGG + chr7_1:42709865-42709884 Msa1020160:intron 15.0%
!!! TTTTGTTTATATTTTATCTC+TGG + chr7_1:42710186-42710205 Msa1020160:intron 15.0%
!! TTGTAATCATAAATATGATA+TGG - chr7_1:42710990-42711009 None:intergenic 15.0%
!!! TTTTTTTACTAAAGTAGTTT+TGG + chr7_1:42711079-42711098 Msa1020160:intron 15.0%
!! TCATTATCTCAAATTATTAC+AGG - chr7_1:42708879-42708898 None:intergenic 20.0%
!!! TTTAACATGCTAATTGATTT+TGG + chr7_1:42709023-42709042 Msa1020160:intron 20.0%
!!! TATAAATGCAATTGTCATTT+TGG + chr7_1:42709787-42709806 Msa1020160:intron 20.0%
!!! TTGATCACTTTTTTATCAAT+AGG + chr7_1:42710701-42710720 Msa1020160:intron 20.0%
!! AATGAAATTAACATGATAGT+AGG + chr7_1:42710783-42710802 Msa1020160:intron 20.0%
!!! TATGTGATTTTGACTAAAAA+TGG + chr7_1:42710819-42710838 Msa1020160:intron 20.0%
!! CTTTAGTAAAAAAAAACACT+TGG - chr7_1:42711073-42711092 None:intergenic 20.0%
!!! TAAAGTAGTTTTGGTTTATT+TGG + chr7_1:42711088-42711107 Msa1020160:intron 20.0%
!! GTAAAATAGTAAAAACTGAA+AGG - chr7_1:42711662-42711681 None:intergenic 20.0%
!! CATTTAAAAAAATGATGTTC+TGG + chr7_1:42711683-42711702 Msa1020160:three_prime_UTR 20.0%
!! TTCAATACATAAAACTAACA+TGG + chr7_1:42711796-42711815 Msa1020160:three_prime_UTR 20.0%
! GTGATTATGATGTGTATATA+GGG - chr7_1:42708780-42708799 None:intergenic 25.0%
! AGTGATTATGATGTGTATAT+AGG - chr7_1:42708781-42708800 None:intergenic 25.0%
! TACAGTTGAAAAGAAAAACA+TGG + chr7_1:42709047-42709066 Msa1020160:intron 25.0%
! AGTAATAAATCGTATATACC+TGG - chr7_1:42709186-42709205 None:intergenic 25.0%
!!! TAATGTATTTTTGAAGGTGT+AGG + chr7_1:42709230-42709249 Msa1020160:intron 25.0%
!! TAGGTAACTTTATTTACAAG+AGG + chr7_1:42709273-42709292 Msa1020160:intron 25.0%
!! GATGTTGTTTATGACATTAA+TGG + chr7_1:42709530-42709549 Msa1020160:CDS 25.0%
! TTAACATGAAGAGTAAGAAA+TGG - chr7_1:42709595-42709614 None:intergenic 25.0%
! TGACTTTGATTACACAAATA+AGG + chr7_1:42709850-42709869 Msa1020160:intron 25.0%
! ATGTTAATTGGACTTCTATA+AGG + chr7_1:42710292-42710311 Msa1020160:CDS 25.0%
! ATTACATTCATACCTTAACA+TGG - chr7_1:42710437-42710456 None:intergenic 25.0%
! TAAAGAACTGTAACATCTAA+AGG - chr7_1:42710496-42710515 None:intergenic 25.0%
!! AATTTTGTGATTTGAAGACT+TGG + chr7_1:42710536-42710555 Msa1020160:intron 25.0%
! AAAAATGGTTAAATTGTGAC+AGG + chr7_1:42710834-42710853 Msa1020160:intron 25.0%
! TTTCCAAAATCAAAGTCTTT+CGG - chr7_1:42711162-42711181 None:intergenic 25.0%
!!! GTAGTTTTACTTTTAGTCAT+TGG - chr7_1:42711243-42711262 None:intergenic 25.0%
!!! TATCACACGTGTTTTAATAT+TGG - chr7_1:42711319-42711338 None:intergenic 25.0%
!! TTGATTTTTCTATGTAGTAG+GGG - chr7_1:42711354-42711373 None:intergenic 25.0%
!!! GTTGATTTTTCTATGTAGTA+GGG - chr7_1:42711355-42711374 None:intergenic 25.0%
!!! TGTTGATTTTTCTATGTAGT+AGG - chr7_1:42711356-42711375 None:intergenic 25.0%
! TATATCATCTGTTGAGAAAT+CGG - chr7_1:42711589-42711608 None:intergenic 25.0%
! TCAACAGATGATATAATTCT+TGG + chr7_1:42711594-42711613 Msa1020160:CDS 25.0%
! AAAAGTTGTGAAATGTTCAT+TGG + chr7_1:42711726-42711745 Msa1020160:three_prime_UTR 25.0%
!! CACGAGAATTATATTTTCTT+TGG + chr7_1:42711767-42711786 Msa1020160:three_prime_UTR 25.0%
TATTATGTTGCGATAAGACT+AGG - chr7_1:42708568-42708587 None:intergenic 30.0%
TCTTATCGCAACATAATAAG+AGG + chr7_1:42708570-42708589 Msa1020160:five_prime_UTR 30.0%
TCTTCTCTTTCTGATTTCAA+TGG + chr7_1:42708708-42708727 Msa1020160:CDS 30.0%
AAGACTTCAAACTCAAATTC+AGG + chr7_1:42708734-42708753 Msa1020160:CDS 30.0%
ATCACTTTCATTTCATGCAT+AGG + chr7_1:42708795-42708814 Msa1020160:intron 30.0%
AGTAATGTTTCTCACATACA+CGG + chr7_1:42708831-42708850 Msa1020160:intron 30.0%
ACCAAGAAAATCCTCATAAT+GGG + chr7_1:42709106-42709125 Msa1020160:CDS 30.0%
ATTACTCATTTGACTCTAAC+CGG + chr7_1:42709200-42709219 Msa1020160:intron 30.0%
CATTTACAATTAGCATACCT+TGG - chr7_1:42709361-42709380 None:intergenic 30.0%
GTAAATGTAAACATCAAAGC+TGG + chr7_1:42709374-42709393 Msa1020160:intron 30.0%
TCATAGATCTTGCATTTGAA+AGG + chr7_1:42709455-42709474 Msa1020160:intron 30.0%
!! TTTTATTTGGCATACGTTTC+AGG + chr7_1:42709660-42709679 Msa1020160:intron 30.0%
!! AAATGTTGGTTCTAAATGTC+AGG + chr7_1:42709947-42709966 Msa1020160:intron 30.0%
AGTGTAAATTAAACTGACCT+CGG - chr7_1:42710028-42710047 None:intergenic 30.0%
!! AGAAAGTTTGTTGCAATCAA+AGG + chr7_1:42710269-42710288 Msa1020160:CDS 30.0%
TGCAATCAAAGGATGTTAAT+TGG + chr7_1:42710280-42710299 Msa1020160:CDS 30.0%
ATAAGGCCAGTTTATATCTA+TGG + chr7_1:42710309-42710328 Msa1020160:CDS 30.0%
TATCATATCTCATCCAATGT+AGG - chr7_1:42710591-42710610 None:intergenic 30.0%
GACAAATATGTCACATTTGA+TGG + chr7_1:42710928-42710947 Msa1020160:CDS 30.0%
TTGGTTTATTTGGTCATTTC+AGG + chr7_1:42711098-42711117 Msa1020160:intron 30.0%
TTCCAAAATCAAAGTCTTTC+GGG - chr7_1:42711161-42711180 None:intergenic 30.0%
CTACATGAACTAAAAGCAAA+AGG + chr7_1:42711259-42711278 Msa1020160:intron 30.0%
!! AAAAGGTGCTATATTTGCAT+GGG + chr7_1:42711276-42711295 Msa1020160:intron 30.0%
AAAGAGAAGAAGCTAAAGGA+GGG - chr7_1:42708698-42708717 None:intergenic 35.0%
TCAGAAAGAGAAGAAGCTAA+AGG - chr7_1:42708702-42708721 None:intergenic 35.0%
ACTTTCATTTCATGCATAGG+AGG + chr7_1:42708798-42708817 Msa1020160:intron 35.0%
AGAAAAACATGGCAACCAAA+AGG + chr7_1:42709058-42709077 Msa1020160:CDS 35.0%
GAAAAACATGGCAACCAAAA+GGG + chr7_1:42709059-42709078 Msa1020160:CDS 35.0%
! GAGACAATTAAAGACCCTTT+TGG - chr7_1:42709076-42709095 None:intergenic 35.0%
CACCAAGAAAATCCTCATAA+TGG + chr7_1:42709105-42709124 Msa1020160:CDS 35.0%
! TCCCATTATGAGGATTTTCT+TGG - chr7_1:42709110-42709129 None:intergenic 35.0%
! AAGAAAATCCTCATAATGGG+AGG + chr7_1:42709109-42709128 Msa1020160:CDS 35.0%
!! TCATTGGTGTGTTTTTGTCT+AGG + chr7_1:42709140-42709159 Msa1020160:CDS 35.0%
!!! CTTTGCTGATTTTTCTTCCA+AGG + chr7_1:42709341-42709360 Msa1020160:CDS 35.0%
GAAATGGTATTCAGTACAGA+AGG - chr7_1:42709579-42709598 None:intergenic 35.0%
TTTATTTACTGCTCTTCTGC+TGG + chr7_1:42709970-42709989 Msa1020160:CDS 35.0%
AACGGTCCATAGATATAAAC+TGG - chr7_1:42710318-42710337 None:intergenic 35.0%
TCAACAGGGTTGTAATTCAA+CGG - chr7_1:42710336-42710355 None:intergenic 35.0%
! TTTTTCCACAGATTGAAAGC+CGG + chr7_1:42710363-42710382 Msa1020160:CDS 35.0%
GGAATACAGATAACACAACT+TGG + chr7_1:42710411-42710430 Msa1020160:CDS 35.0%
TACAAAATCAGCAGTATCAG+AGG - chr7_1:42710651-42710670 None:intergenic 35.0%
! GATTTTGTAGCAGTTCACTT+TGG + chr7_1:42710662-42710681 Msa1020160:intron 35.0%
TTTGTAAATGCTTGCCTTCT+AGG + chr7_1:42710727-42710746 Msa1020160:intron 35.0%
ATCTTCAAAAGCAACCTAGA+AGG - chr7_1:42710744-42710763 None:intergenic 35.0%
GGTTAAATTGTGACAGGATT+TGG + chr7_1:42710840-42710859 Msa1020160:intron 35.0%
GAAGGTTCTTGGAAATGAAA+AGG + chr7_1:42710876-42710895 Msa1020160:CDS 35.0%
AAGCAGATATTCAACATCTC+AGG + chr7_1:42710904-42710923 Msa1020160:CDS 35.0%
! ATTAGCAAAAGCATGTGCTA+AGG + chr7_1:42710951-42710970 Msa1020160:CDS 35.0%
TTTATTTGGTCATTTCAGGC+TGG + chr7_1:42711102-42711121 Msa1020160:intron 35.0%
!! AGTGAATGATTTCTGGTTCA+GGG - chr7_1:42711134-42711153 None:intergenic 35.0%
!! TAGTGAATGATTTCTGGTTC+AGG - chr7_1:42711135-42711154 None:intergenic 35.0%
!! AACCCGAAAGACTTTGATTT+TGG + chr7_1:42711156-42711175 Msa1020160:intron 35.0%
!! CAAAAGGTGCTATATTTGCA+TGG + chr7_1:42711275-42711294 Msa1020160:intron 35.0%
GTGAAATGTTCATTGGATTG+CGG + chr7_1:42711733-42711752 Msa1020160:three_prime_UTR 35.0%
! AATGAAAGGCTGTGGATTGA+AGG + chr7_1:42708522-42708541 Msa1020160:five_prime_UTR 40.0%
! ATGAAAGGCTGTGGATTGAA+GGG + chr7_1:42708523-42708542 Msa1020160:five_prime_UTR 40.0%
TTTGGTTGTGAGGTGTGTAT+AGG - chr7_1:42708633-42708652 None:intergenic 40.0%
ACAACCAAACATGGCAAGAT+TGG + chr7_1:42708644-42708663 Msa1020160:exon 40.0%
! GGAAAGATAGTTGACTCTGT+TGG - chr7_1:42708677-42708696 None:intergenic 40.0%
GAAAGAGAAGAAGCTAAAGG+AGG - chr7_1:42708699-42708718 None:intergenic 40.0%
!!! CAGGTGTTGAGTATTTTGTC+CGG - chr7_1:42708860-42708879 None:intergenic 40.0%
CTATGTAGCATCAACACTTC+AGG - chr7_1:42708929-42708948 None:intergenic 40.0%
ATCTAGTACCTCCCATTATG+AGG - chr7_1:42709120-42709139 None:intergenic 40.0%
!! ATGGGAGGTACTAGATTCAT+TGG + chr7_1:42709124-42709143 Msa1020160:CDS 40.0%
TCTAGGCAACTTGTCAAAGA+AGG + chr7_1:42709157-42709176 Msa1020160:CDS 40.0%
TCTTGCATTTGAAAGGAGAC+AGG + chr7_1:42709462-42709481 Msa1020160:CDS 40.0%
AAATCTAGTCTCTCAGCAGA+AGG + chr7_1:42709503-42709522 Msa1020160:CDS 40.0%
AGAAGAAGTTGAGCCCATAT+TGG + chr7_1:42709692-42709711 Msa1020160:CDS 40.0%
! TTAGGCAGAGCATCCAATAT+GGG - chr7_1:42709708-42709727 None:intergenic 40.0%
! ATTAGGCAGAGCATCCAATA+TGG - chr7_1:42709709-42709728 None:intergenic 40.0%
ACAGCTTACTGTTCCAGATT+AGG - chr7_1:42709726-42709745 None:intergenic 40.0%
TGCCATGATGCAATTGTTTG+AGG + chr7_1:42710075-42710094 Msa1020160:intron 40.0%
TGCCTCAAACAATTGCATCA+TGG - chr7_1:42710080-42710099 None:intergenic 40.0%
ATTACAACCCTGTTGAAGAG+TGG + chr7_1:42710340-42710359 Msa1020160:CDS 40.0%
GGAAAAACCACTCTTCAACA+GGG - chr7_1:42710350-42710369 None:intergenic 40.0%
TGGAAAAACCACTCTTCAAC+AGG - chr7_1:42710351-42710370 None:intergenic 40.0%
TGTTATCTGTATTCCTGAGC+CGG - chr7_1:42710406-42710425 None:intergenic 40.0%
AACACAACTTGGCCATGTTA+AGG + chr7_1:42710422-42710441 Msa1020160:CDS 40.0%
CATGTTGAGAAGTCCTACAT+TGG + chr7_1:42710575-42710594 Msa1020160:intron 40.0%
! ACAGCTTTTGTGAAGGTTCT+TGG + chr7_1:42710865-42710884 Msa1020160:CDS 40.0%
GATGTTGAATATCTGCTTGC+TGG - chr7_1:42710902-42710921 None:intergenic 40.0%
GGGTTGTAGTGAATGATTTC+TGG - chr7_1:42711141-42711160 None:intergenic 40.0%
TTTCTTTGCATCAGTGGAGA+AGG + chr7_1:42711464-42711483 Msa1020160:CDS 40.0%
! TTGGGTTAGAACCTGACTAT+GGG + chr7_1:42711499-42711518 Msa1020160:CDS 40.0%
TCTTACAGATTCGTACAACC+TGG + chr7_1:42711533-42711552 Msa1020160:CDS 40.0%
! CTGTGGATTGAAGGGAATTG+AGG + chr7_1:42708531-42708550 Msa1020160:five_prime_UTR 45.0%
TGGATTGAAGGGAATTGAGG+TGG + chr7_1:42708534-42708553 Msa1020160:five_prime_UTR 45.0%
ATTGAAGGGAATTGAGGTGG+AGG + chr7_1:42708537-42708556 Msa1020160:five_prime_UTR 45.0%
ACACACCTCACAACCAAACA+TGG + chr7_1:42708635-42708654 Msa1020160:exon 45.0%
TCTTGCCATGTTTGGTTGTG+AGG - chr7_1:42708643-42708662 None:intergenic 45.0%
ACCAAACATGGCAAGATTGG+TGG + chr7_1:42708647-42708666 Msa1020160:exon 45.0%
TTTCTCACATACACGGACAC+CGG + chr7_1:42708838-42708857 Msa1020160:intron 45.0%
ACTTGTCAAAGAAGGTCACC+AGG + chr7_1:42709165-42709184 Msa1020160:CDS 45.0%
CCTGGCAATTGTTGAGTGAT+AGG - chr7_1:42709306-42709325 None:intergenic 45.0%
CCTATCACTCAACAATTGCC+AGG + chr7_1:42709303-42709322 Msa1020160:CDS 45.0%
AAGTCAGTGTCTGATTCACC+TGG - chr7_1:42709324-42709343 None:intergenic 45.0%
GCATTTGAAAGGAGACAGGA+AGG + chr7_1:42709466-42709485 Msa1020160:CDS 45.0%
ATTGGATGCTCTGCCTAATC+TGG + chr7_1:42709710-42709729 Msa1020160:CDS 45.0%
TGATTTATTACCTCACGCCG+AGG + chr7_1:42710008-42710027 Msa1020160:CDS 45.0%
GTTATCTGTATTCCTGAGCC+GGG - chr7_1:42710405-42710424 None:intergenic 45.0%
! TTTGGCGACAGCTTTTGTGA+AGG + chr7_1:42710858-42710877 Msa1020160:CDS 45.0%
ATTTGGTCATTTCAGGCTGG+TGG + chr7_1:42711105-42711124 Msa1020160:intron 45.0%
TTTGGTCATTTCAGGCTGGT+GGG + chr7_1:42711106-42711125 Msa1020160:intron 45.0%
GTCATTTCCATTTCGCGATC+AGG + chr7_1:42711188-42711207 Msa1020160:intron 45.0%
TACTTCACCTGATCGCGAAA+TGG - chr7_1:42711198-42711217 None:intergenic 45.0%
GCAGCATTTCTTTGCATCAG+TGG + chr7_1:42711458-42711477 Msa1020160:intron 45.0%
! AGAAGGCAAAGAGTGTGCTT+GGG + chr7_1:42711481-42711500 Msa1020160:CDS 45.0%
! CTTGGGTTAGAACCTGACTA+TGG + chr7_1:42711498-42711517 Msa1020160:CDS 45.0%
GATTCGTACAACCTGGACTT+TGG + chr7_1:42711540-42711559 Msa1020160:CDS 45.0%
TACAACCTGGACTTTGGTAG+AGG + chr7_1:42711546-42711565 Msa1020160:CDS 45.0%
AAGTTCCTCTACCAAAGTCC+AGG - chr7_1:42711554-42711573 None:intergenic 45.0%
TAGAGGAACTTTCCGCAAAG+AGG + chr7_1:42711563-42711582 Msa1020160:CDS 45.0%
TTGAGAAATCGGCCTCTTTG+CGG - chr7_1:42711578-42711597 None:intergenic 45.0%
AGGAGGGAAATGAAAGGCTG+TGG + chr7_1:42708514-42708533 Msa1020160:five_prime_UTR 50.0%
GCCACCAATCTTGCCATGTT+TGG - chr7_1:42708651-42708670 None:intergenic 50.0%
ATTAAACTGACCTCGGCGTG+AGG - chr7_1:42710021-42710040 None:intergenic 50.0%
ATGCAGTTGACCCTAAGAGC+AGG + chr7_1:42710226-42710245 Msa1020160:CDS 50.0%
TTCCCTTGTGCCTGCTCTTA+GGG - chr7_1:42710239-42710258 None:intergenic 50.0%
TTTCCCTTGTGCCTGCTCTT+AGG - chr7_1:42710240-42710259 None:intergenic 50.0%
CTGAGCCGGGAATAGGAATT+GGG - chr7_1:42710392-42710411 None:intergenic 50.0%
TGTATTCCTGAGCCGGGAAT+AGG - chr7_1:42710399-42710418 None:intergenic 50.0%
! GAGAAGGCAAAGAGTGTGCT+TGG + chr7_1:42711480-42711499 Msa1020160:CDS 50.0%
CCTTCTACAAGCCCATAGTC+AGG - chr7_1:42711513-42711532 None:intergenic 50.0%
CCTGACTATGGGCTTGTAGA+AGG + chr7_1:42711510-42711529 Msa1020160:CDS 50.0%
GGCATACGTTTCAGGACGAG+AGG + chr7_1:42709668-42709687 Msa1020160:intron 55.0%
TGACCCTAAGAGCAGGCACA+AGG + chr7_1:42710233-42710252 Msa1020160:CDS 55.0%
GACCCTAAGAGCAGGCACAA+GGG + chr7_1:42710234-42710253 Msa1020160:CDS 55.0%
GGGAATAGGAATTGGGCGAC+CGG - chr7_1:42710385-42710404 None:intergenic 55.0%
GGTCGCCCAATTCCTATTCC+CGG + chr7_1:42710384-42710403 Msa1020160:CDS 55.0%
CCTGAGCCGGGAATAGGAAT+TGG - chr7_1:42710393-42710412 None:intergenic 55.0%
CCAATTCCTATTCCCGGCTC+AGG + chr7_1:42710390-42710409 Msa1020160:CDS 55.0%
! GGCGACCGGCTTTCAATCTG+TGG - chr7_1:42710371-42710390 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 42708513 42711834 42708513 ID=Msa1020160;Name=Msa1020160
chr7_1 mRNA 42708513 42711834 42708513 ID=Msa1020160-mRNA-1;Parent=Msa1020160;Name=Msa1020160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=141|0.88|1|1|0.88|0.8|10|165|348
chr7_1 exon 42708513 42708755 42708513 ID=Msa1020160-mRNA-1:exon:8376;Parent=Msa1020160-mRNA-1
chr7_1 exon 42709052 42709186 42709052 ID=Msa1020160-mRNA-1:exon:8377;Parent=Msa1020160-mRNA-1
chr7_1 exon 42709276 42709362 42709276 ID=Msa1020160-mRNA-1:exon:8378;Parent=Msa1020160-mRNA-1
chr7_1 exon 42709461 42709551 42709461 ID=Msa1020160-mRNA-1:exon:8379;Parent=Msa1020160-mRNA-1
chr7_1 exon 42709682 42709736 42709682 ID=Msa1020160-mRNA-1:exon:8380;Parent=Msa1020160-mRNA-1
chr7_1 exon 42709969 42710029 42709969 ID=Msa1020160-mRNA-1:exon:8381;Parent=Msa1020160-mRNA-1
chr7_1 exon 42710222 42710443 42710222 ID=Msa1020160-mRNA-1:exon:8382;Parent=Msa1020160-mRNA-1
chr7_1 exon 42710856 42710972 42710856 ID=Msa1020160-mRNA-1:exon:8383;Parent=Msa1020160-mRNA-1
chr7_1 exon 42711462 42711640 42711462 ID=Msa1020160-mRNA-1:exon:8384;Parent=Msa1020160-mRNA-1
chr7_1 exon 42711672 42711834 42711672 ID=Msa1020160-mRNA-1:exon:8385;Parent=Msa1020160-mRNA-1
chr7_1 five_prime_UTR 42708513 42708653 42708513 ID=Msa1020160-mRNA-1:five_prime_utr;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42708654 42708755 42708654 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42709052 42709186 42709052 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42709276 42709362 42709276 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42709461 42709551 42709461 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42709682 42709736 42709682 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42709969 42710029 42709969 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42710222 42710443 42710222 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42710856 42710972 42710856 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 CDS 42711462 42711638 42711462 ID=Msa1020160-mRNA-1:cds;Parent=Msa1020160-mRNA-1
chr7_1 three_prime_UTR 42711639 42711640 42711639 ID=Msa1020160-mRNA-1:three_prime_utr;Parent=Msa1020160-mRNA-1
chr7_1 three_prime_UTR 42711672 42711834 42711672 ID=Msa1020160-mRNA-1:three_prime_utr;Parent=Msa1020160-mRNA-1
Gene Sequence

>Msa1020160

ATGGCAAGATTGGTGGCACTCCAACAGAGTCAACTATCTTTCCCTCCTTTAGCTTCTTCTCTTTCTGATTTCAATGGAGCAAGACTTCAAACTCAAATTCAGTTGAAAAGAAAAACATGGCAACCAAAAGGGTCTTTAATTGTCTCAGCATCAAGCACCAAGAAAATCCTCATAATGGGAGGTACTAGATTCATTGGTGTGTTTTTGTCTAGGCAACTTGTCAAAGAAGGTCACCAGGTAACTTTATTTACAAGAGGAAAAGCACCTATCACTCAACAATTGCCAGGTGAATCAGACACTGACTTTGCTGATTTTTCTTCCAAGATCTTGCATTTGAAAGGAGACAGGAAGGACTATGATTTTGTAAAATCTAGTCTCTCAGCAGAAGGATTTGATGTTGTTTATGACATTAATGGACGAGAGGCAGAAGAAGTTGAGCCCATATTGGATGCTCTGCCTAATCTGGAACAGTTTATTTACTGCTCTTCTGCTGGCGTCTATCTCAAGTCTGATTTATTACCTCACGCCGAGATTGATGCAGTTGACCCTAAGAGCAGGCACAAGGGAAAGCTTGAAACAGAAAGTTTGTTGCAATCAAAGGATGTTAATTGGACTTCTATAAGGCCAGTTTATATCTATGGACCGTTGAATTACAACCCTGTTGAAGAGTGGTTTTTCCACAGATTGAAAGCCGGTCGCCCAATTCCTATTCCCGGCTCAGGAATACAGATAACACAACTTGGCCATGTTAAGGATTTGGCGACAGCTTTTGTGAAGGTTCTTGGAAATGAAAAGGCCAGCAAGCAGATATTCAACATCTCAGGAGACAAATATGTCACATTTGATGGATTAGCAAAAGCATGTGCTAAGCATTTCTTTGCATCAGTGGAGAAGGCAAAGAGTGTGCTTGGGTTAGAACCTGACTATGGGCTTGTAGAAGGTCTTACAGATTCGTACAACCTGGACTTTGGTAGAGGAACTTTCCGCAAAGAGGCCGATTTCTCAACAGATGATATAATTCTTGGCAAGAGTCTTGTTAGTGTATGA

Protein sequence

>Msa1020160

MARLVALQQSQLSFPPLASSLSDFNGARLQTQIQLKRKTWQPKGSLIVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFVKVLGNEKASKQIFNISGDKYVTFDGLAKACAKHFFASVEKAKSVLGLEPDYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVSV*