AlfalfaGEDB | Msa0695800

M. sativa cultivar zhongmu-4 / Msa0695800

KEGG: K07456
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391
PFAM: PF00488.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695800	XP_013457053.1	93.590	156	10	0	479	634	654	809	2.18e-84	295
Msa0695800	XP_013457053.1	94.781	479	25	0	1	479	1	479	0.0	947

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695800	sp\|P73625\|MUTS2_SYNY3	30.837	454	242	11	33	479	8	396	8.94e-49	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695800	G7ZZ93	93.590	156	10	0	479	634	654	809	1.04e-84	295
Msa0695800	G7ZZ93	94.781	479	25	0	1	479	1	479	0.0	947

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0695800	0.818874	1.560576e-52	-8.615850e-47
Msa0000220	Msa0695800	0.819696	1.013939e-52	-8.615850e-47
Msa0000610	Msa0695800	0.866149	3.521856e-65	-8.615850e-47
Msa0001040	Msa0695800	0.838345	3.039103e-57	-8.615850e-47
Msa0001510	Msa0695800	0.843688	1.201719e-58	-8.615850e-47
Msa0002110	Msa0695800	0.850676	1.455448e-60	-8.615850e-47
Msa0002690	Msa0695800	0.870153	1.809987e-66	-8.615850e-47
Msa0002700	Msa0695800	0.867601	1.213657e-65	-8.615850e-47
Msa0003340	Msa0695800	0.857224	1.887889e-62	-8.615850e-47
Msa0004180	Msa0695800	0.854275	1.372046e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695800	MtrunA17_Chr4g0047451	94.781	479	25	0	1	479	1	479	0.0	947
Msa0695800	MtrunA17_Chr4g0047451	93.590	156	10	0	479	634	654	809	2.01e-88	295
Msa0695800	MtrunA17_Chr5g0428751	30.526	475	268	17	33	479	43	483	5.75e-40	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695800	AT1G65070.3	53.728	456	162	6	28	479	40	450	4.33e-149	446
Msa0695800	AT1G65070.4	53.728	456	162	6	28	479	40	450	3.18e-147	448
Msa0695800	AT1G65070.4	42.945	163	90	2	478	639	624	784	7.25e-33	135
Msa0695800	AT1G65070.2	53.728	456	162	6	28	479	40	450	7.17e-147	448
Msa0695800	AT1G65070.2	42.945	163	90	2	478	639	624	784	7.97e-33	135
Msa0695800	AT1G65070.1	53.728	456	162	6	28	479	40	450	1.19e-146	447
Msa0695800	AT1G65070.1	42.604	169	88	3	478	639	624	790	2.34e-32	134
Msa0695800	AT5G54090.1	29.193	483	292	15	20	479	34	489	8.31e-36	144

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Find 325 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCAATCCACAACAGA+AGG	0.603222	4_4:-65495483	Msa0695800:five_prime_UTR
AAAATACCCTCGCCAAAAGC+AGG	0.494149	4_4:+65490354	None:intergenic
AAACTGTCAAGAGCGTGGTG+GGG	0.666765	4_4:-65489756	Msa0695800:three_prime_UTR
AAAGAGGAGAACAAACGTAC+CGG	0.599308	4_4:+65489964	None:intergenic
AAAGCTCATACTCCTGCTGT+TGG	0.614300	4_4:-65491834	Msa0695800:CDS
AAATACCTTTCAATAAAATT+TGG	0.146933	4_4:+65491262	None:intergenic
AAATAGCTAGAGGGGTTGAG+AGG	0.539454	4_4:-65491121	Msa0695800:three_prime_UTR
AAATAGTAACAAATACTCTC+CGG	0.565962	4_4:+65491092	None:intergenic
AACAACGCCCGTTTACCCGT+CGG	0.621448	4_4:-65495224	Msa0695800:CDS
AACCACTGAATGGAAAATCC+CGG	0.535658	4_4:-65490714	Msa0695800:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTATTTGAGCTAATCTAC+CGG	+	chr4_4:65490128-65490147	None:intergenic	30.0%
ACTATTACTTAGCGTATGTT+TGG	+	chr4_4:65490155-65490174	None:intergenic	30.0%
AGAAATTCTCTAAGCAATCA+AGG	+	chr4_4:65490219-65490238	None:intergenic	30.0%
TTGCTTAGAGAATTTCTGTA+TGG	-	chr4_4:65490222-65490241	Msa0695800:three_prime_UTR	30.0%
TCATTAGATCAGAACGAAAA+AGG	-	chr4_4:65490726-65490745	Msa0695800:three_prime_UTR	30.0%
AAAAAGGAACATAGAAATCC+TGG	-	chr4_4:65490742-65490761	Msa0695800:three_prime_UTR	30.0%
AGCAATAGATTTGAACAACA+TGG	-	chr4_4:65490949-65490968	Msa0695800:three_prime_UTR	30.0%
ATTTGAACAACATGGAAGTT+AGG	-	chr4_4:65490957-65490976	Msa0695800:three_prime_UTR	30.0%
TTTCAGATAATGTCACACTA+AGG	-	chr4_4:65491284-65491303	Msa0695800:three_prime_UTR	30.0%
CTTGTTCTCATTGATGAAAT+TGG	-	chr4_4:65491811-65491830	Msa0695800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	65489265	65495507	65489265	ID=Msa0695800;Name=Msa0695800
chr4_4	mRNA	65489265	65495507	65489265	ID=Msa0695800-mRNA-1;Parent=Msa0695800;Name=Msa0695800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=69\|0.5\|1\|1\|0.5\|0.33\|3\|2295\|645
chr4_4	exon	65489265	65492060	65489265	ID=Msa0695800-mRNA-1:exon:18933;Parent=Msa0695800-mRNA-1
chr4_4	exon	65493187	65494171	65493187	ID=Msa0695800-mRNA-1:exon:18932;Parent=Msa0695800-mRNA-1
chr4_4	exon	65494987	65495507	65494987	ID=Msa0695800-mRNA-1:exon:18931;Parent=Msa0695800-mRNA-1
chr4_4	five_prime_UTR	65495439	65495507	65495439	ID=Msa0695800-mRNA-1:five_prime_utr;Parent=Msa0695800-mRNA-1
chr4_4	CDS	65494987	65495438	65494987	ID=Msa0695800-mRNA-1:cds;Parent=Msa0695800-mRNA-1
chr4_4	CDS	65493187	65494171	65493187	ID=Msa0695800-mRNA-1:cds;Parent=Msa0695800-mRNA-1
chr4_4	CDS	65491560	65492060	65491560	ID=Msa0695800-mRNA-1:cds;Parent=Msa0695800-mRNA-1
chr4_4	three_prime_UTR	65489265	65491559	65489265	ID=Msa0695800-mRNA-1:three_prime_utr;Parent=Msa0695800-mRNA-1

Gene Sequence

>Msa0695800

ATGCAACTCACCTGCAACCTCTTCATCCCCATCAACAAACCCTCAATCCCTCGCTTCTCCTTCAAACCTTGCTTCTGCTACTCAACCGAGTCCAACTCAGTCCAATCCGATAGCCTCAAAACTCTCGAATGGAACTCCATATGCAAGCAACTCTCAGCATTCACTTCCACTTCAATGGGCTCCTCCGCCGCCAACAACGCCCGTTTACCCGTCGGACGTACTCCAACAGACAGCCAAAAGCTTCTCGATCAAACCTCCGCTGCCAGACTCATTCCTCAACAACAACTCGACTTTTCTGGAATACATGACTTGACTGACATTCTCTCCGTTGCTGTTTCCGGTAGATTGTTGACTATTCCCGAGCTTTGCACCGTTCGAAGAACACTCGCTGCTTCCAGGGAATTGTTTGATAGTTTGAAACACTTGGCTTCTGTATCTAATCATTCACACAGGTACTCACCCCTTCTTGAAATACTGCAAAATTGTAATTTCCTAATGGGCTTGGAGCGCAGGATAGAATTTTGCATAGATTGCAATCTTTTGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAACGAAAAAGGAACATAGAAATCCTGGACTCTTTATTGAAGGAAGTATCGTCTCAAATTTTTCGGGCTGGGGGTATTGACAGACCATTTATTACTAAGCGTCGATCTAGAATGTGCGTGGGCATCAGGGCTTCGTATAGGTATTTGCTTCCAGAAGGTATAGTTCTGAATGCCAGCAGCTCTGGAGCAACATACTTTATGGAACCGAAAGAAGCAATAGATTTGAACAACATGGAAGTTAGGCTTTCAAACTCTGAAGCGGCCGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAAATATTTGTTGGATAAAATTCTTGAGGTTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGGTATGTCCAATTTTCAGTTTAGGTACTCTTGGAGGTTGCAATTCTGTTGAAGAGGACAATGACATTGCGGTCGTGCAGGATGACGATTTAACAGTAAATATTGAGGGTATGCGGCATCCATTACTCCTGGAGTCGTCTCTAGAAAACATTTCAGATAATGTCACACTAAGGTCTGGAAATTCTTCTGAGTTGGGTAATGGAAATGGAACAATGGCTTCTAAAAGCGCGTCACAAGGCATAACAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGATCTGGAACTAGAGTGGTGGTCATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCAATGAAAACGTTGGGCCTGGCATCACTTATGTCAAAAGCCGGAATGCATCTGCCTGCCAAGAAAAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCAGATATTGGAGATCACCAGATCCAAAGGGAGGCAGAAGACCTTGATAGACGTGAAACGATGCTTATGGCAAAGGAAGCTCAACAGGTCCAACAAGAGTTAGAGGATGCAAAATCTCAAATGGAAATTGTAATACAGAAATTCGAAAAGCAACTAAAAGATTTGGGACGCAACCAACTCAATTCAATAATTAAAGAATCTGAAACTGCAATTGCCTCCATTGTAAAAGCTCATACTCCTGCTGTTGGTTCTCCCATCAGTGGCGCTGATCGCATTACATCATATACTCCACAATTTGGAGAGCAAGTCCGTGTGAAGGGATTGGGAGGAAAATTAGCCACAGTGGTAGAATTGCCTGGGGATGATGAAACAATCTTGGTACAGTATGGTAAAGTGAAAGTACGTGTGAAGAAAAATCGCATCAGAGCTATTCCACCAAGTGCAAAGAATCCTGCAACTAGTTCTCCCACTCATCAGGGAAAGCAGGTATGTACAAAGAAATCTTTGCTGTCATATAAATAA

Protein sequence

>Msa0695800

MQLTCNLFIPINKPSIPRFSFKPCFCYSTESNSVQSDSLKTLEWNSICKQLSAFTSTSMGSSAANNARLPVGRTPTDSQKLLDQTSAARLIPQQQLDFSGIHDLTDILSVAVSGRLLTIPELCTVRRTLAASRELFDSLKHLASVSNHSHRYSPLLEILQNCNFLMGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFRAGGIDRPFITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASEIANSESEIKYLLDKILEVDLAFARAAYAQWMNGVCPIFSLGTLGGCNSVEEDNDIAVVQDDDLTVNIEGMRHPLLLESSLENISDNVTLRSGNSSELGNGNGTMASKSASQGITDFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPWFDLILADIGDHQIQREAEDLDRRETMLMAKEAQQVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKESETAIASIVKAHTPAVGSPISGADRITSYTPQFGEQVRVKGLGGKLATVVELPGDDETILVQYGKVKVRVKKNRIRAIPPSAKNPATSSPTHQGKQVCTKKSLLSYK*