AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452800 MtrunA17_Chr8g0383001 97.619 336 2 1 1 330 1 336 0.0 668
Msa1452800 MtrunA17_Chr2g0310591 35.088 171 99 2 166 327 218 385 1.82e-21 94.0
Msa1452800 MtrunA17_Chr7g0273361 28.931 159 100 3 182 329 178 334 5.94e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452800 AT2G21960.1 83.039 283 48 0 48 330 50 332 2.73e-172 481
Msa1452800 AT1G56180.1 32.143 168 105 1 171 329 217 384 1.34e-19 89.0
Msa1452800 AT5G27290.1 31.447 159 96 4 182 329 179 335 6.63e-14 72.0

Find 88 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 tig0034162:-25417 Msa1452800:CDS
GAAGCTCTGGTTGTGAATTT+AGG 0.115841 tig0034162:+27778 None:intergenic
GAAGAACTCATGTTCAATTT+TGG 0.162931 tig0034162:+24298 None:intergenic
CTTCGAGAGCTGACAACTTT+AGG 0.199826 tig0034162:-26881 Msa1452800:CDS
GTCGATCCATGAAGCCTTAA+TGG 0.219380 tig0034162:-24608 Msa1452800:CDS
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 tig0034162:-26644 Msa1452800:CDS
ATCCAGTGAATATCCCAAAA+TGG 0.251435 tig0034162:+25403 None:intergenic
TTCGAGAGCTGACAACTTTA+GGG 0.257197 tig0034162:-26880 Msa1452800:CDS
AACTGGATTCTTGGGTATTC+TGG 0.263208 tig0034162:-26660 Msa1452800:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 tig0034162:-27430 Msa1452800:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 tig0034162:-26643 Msa1452800:CDS
GCAATCCTTTCTTGATAATC+AGG 0.293245 tig0034162:+25595 None:intergenic
AAGCTCTGGTTGTGAATTTA+GGG 0.294762 tig0034162:+27779 None:intergenic
TTGGGATATTCACTGGATAT+TGG 0.298796 tig0034162:-25398 Msa1452800:CDS
TTCTTTGTACCATACTTGAT+TGG 0.309773 tig0034162:-25788 Msa1452800:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 tig0034162:-25764 Msa1452800:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 tig0034162:+27402 None:intergenic
TTTACTGTGGTTGGAACAAC+TGG 0.327694 tig0034162:-26677 Msa1452800:CDS
ATCTTTGCTGAGTTGTGGTT+TGG 0.340177 tig0034162:+24820 None:intergenic
GGTTGGAACAACTGGATTCT+TGG 0.341417 tig0034162:-26669 Msa1452800:CDS
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 tig0034162:-25431 Msa1452800:intron
CTTTGCCATCGATGCCATTA+AGG 0.360946 tig0034162:+24594 None:intergenic
AGCAACAAAATCTCACTAGA+TGG 0.367508 tig0034162:-24796 Msa1452800:CDS
TTTGGTGGTGATGATGATTA+TGG 0.373375 tig0034162:+27821 None:intergenic
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 tig0034162:-25765 Msa1452800:CDS
GGTTGATGTTGAAGCATGTT+TGG 0.383493 tig0034162:+27803 None:intergenic
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 tig0034162:-25758 Msa1452800:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 tig0034162:+25779 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 tig0034162:-25771 Msa1452800:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 tig0034162:-25787 Msa1452800:CDS
TGTAATTGTTCCAACCTCAT+TGG 0.410517 tig0034162:+27935 None:intergenic
TGCAGCAGAGGAAGAAGCTC+TGG 0.413680 tig0034162:+27765 None:intergenic
CAGATTGGCTGTTGTATCAA+TGG 0.423423 tig0034162:-25030 Msa1452800:CDS
TCGATGCCATTAAGGCTTCA+TGG 0.429892 tig0034162:+24602 None:intergenic
TGTTGTATCAATGGCTGGAC+TGG 0.438705 tig0034162:-25021 Msa1452800:CDS
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 tig0034162:-27414 Msa1452800:CDS
TGAGAGTTGAGAAGCTTTGT+GGG 0.445509 tig0034162:+27990 None:intergenic
TCCAGTGAATATCCCAAAAT+GGG 0.449171 tig0034162:+25404 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 tig0034162:-27760 Msa1452800:CDS
TTAACATATGACAAGGTTGT+TGG 0.456845 tig0034162:-24987 Msa1452800:CDS
ATGTCAATCTCATTGATGAT+AGG 0.463698 tig0034162:-25367 Msa1452800:CDS
GAGTCCTTCCCTTTGAGAAA+CGG 0.465517 tig0034162:+24366 None:intergenic
TTGAGAGTTGAGAAGCTTTG+TGG 0.466186 tig0034162:+27989 None:intergenic
TTAACTTTCCGTTTCTCAAA+GGG 0.467194 tig0034162:-24374 Msa1452800:three_prime_UTR
CCAACCTCATTGGAGGGTGC+AGG 0.470174 tig0034162:+27945 None:intergenic
TGCTGATCTTTGCTGAGTTG+TGG 0.475443 tig0034162:+24815 None:intergenic
GTTGGAACAACTGGATTCTT+GGG 0.483037 tig0034162:-26668 Msa1452800:CDS
CTTGAAAAGCTTCTCTATAG+TGG 0.485483 tig0034162:-25344 Msa1452800:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 tig0034162:-26656 Msa1452800:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 tig0034162:+26633 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 tig0034162:-27455 Msa1452800:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 tig0034162:-25743 Msa1452800:CDS
TTGATGCTAAGGAGATAGAT+AGG 0.494421 tig0034162:-25316 Msa1452800:intron
AATGGCATCGATGGCAAAGA+AGG 0.499709 tig0034162:-24590 Msa1452800:CDS
GTCGACACCAGGTGCAGCAG+AGG 0.506013 tig0034162:+27753 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 tig0034162:+27382 None:intergenic
TTGGCTGTTGTATCAATGGC+TGG 0.512860 tig0034162:-25026 Msa1452800:CDS
ACTCTAGCTCTAGAGATCAA+TGG 0.513577 tig0034162:+24344 None:intergenic
TGTTGACTGATGCAGGATTG+GGG 0.521890 tig0034162:-25812 Msa1452800:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 tig0034162:-27383 Msa1452800:intron
TAGTGGTCAGCTTGATGCTA+AGG 0.529877 tig0034162:-25327 Msa1452800:CDS
TTGGGTAAAGATGATGAGTA+AGG 0.530143 tig0034162:+27862 None:intergenic
AATTGTTCCAACCTCATTGG+AGG 0.533072 tig0034162:+27938 None:intergenic
ATCAACTGAGTGAAATTGGT+TGG 0.534376 tig0034162:-27426 Msa1452800:CDS
GTTAACTTTCCGTTTCTCAA+AGG 0.534587 tig0034162:-24375 Msa1452800:three_prime_UTR
GCCTATACCCAATACCACTA+AGG 0.541332 tig0034162:+25757 None:intergenic
TGAAGCCTTAATGGCATCGA+TGG 0.543498 tig0034162:-24599 Msa1452800:CDS
TCAACTGAGTGAAATTGGTT+GGG 0.547534 tig0034162:-27425 Msa1452800:CDS
AAAAGCTGCTAATAGCTGCT+TGG 0.552163 tig0034162:+25629 None:intergenic
CCTGCACCCTCCAATGAGGT+TGG 0.557721 tig0034162:-27945 Msa1452800:five_prime_UTR
TTCTGACACTAGGAATTGCA+AGG 0.566777 tig0034162:+26840 None:intergenic
TGATGTTGAAGCATGTTTGG+TGG 0.574649 tig0034162:+27806 None:intergenic
CAGGTTGCAGTAGATAAGAA+AGG 0.575092 tig0034162:+27964 None:intergenic
GCAACAAAATCTCACTAGAT+GGG 0.575785 tig0034162:-24795 Msa1452800:CDS
CTTTCCGTTTCTCAAAGGGA+AGG 0.577870 tig0034162:-24370 Msa1452800:three_prime_UTR
TCTTGATTCTGCCATTGCCA+AGG 0.579069 tig0034162:-27722 Msa1452800:intron
CTCTGGTTGTGAATTTAGGG+AGG 0.583321 tig0034162:+27782 None:intergenic
ATGGTCAATTACCTTGGCAA+TGG 0.596299 tig0034162:+27711 None:intergenic
CTCACATCATTTCTGACACT+AGG 0.596674 tig0034162:+26830 None:intergenic
ATTGTTCCAACCTCATTGGA+GGG 0.600354 tig0034162:+27939 None:intergenic
ATGGCTGGACTGGCAGCAGA+AGG 0.600695 tig0034162:-25011 Msa1452800:CDS
AGAGTGTTGAGGTCGACACC+AGG 0.613261 tig0034162:+27742 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 tig0034162:-26642 Msa1452800:intron
GTATAGGCAGCACATCTCCT+GGG 0.621976 tig0034162:-25742 Msa1452800:intron
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 tig0034162:+27731 None:intergenic
GCAACCTGCACCCTCCAATG+AGG 0.659790 tig0034162:-27949 Msa1452800:five_prime_UTR
AGAAGGTTTAACATATGACA+AGG 0.674545 tig0034162:-24994 Msa1452800:CDS
TAAAGATGATGAGTAAGGCA+TGG 0.722574 tig0034162:+27867 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG + tig0034162:24452-24471 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG + tig0034162:24458-24477 None:intergenic 10.0%
!! GTAAAAATTATAATATGGTT+TGG + tig0034162:24453-24472 None:intergenic 15.0%
!! ACTTCAAATAAAAAATGTAA+TGG + tig0034162:24604-24623 None:intergenic 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG - tig0034162:25229-25248 Msa1452800:intron 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG - tig0034162:25230-25249 Msa1452800:intron 15.0%
!! GCATATGAATATTTAAATAT+GGG + tig0034162:25344-25363 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG + tig0034162:25345-25364 None:intergenic 15.0%
!! GTTAACACAAATAAAAAAAA+TGG + tig0034162:27904-27923 None:intergenic 15.0%
!! AGTTATATAAAAATTACACG+AGG - tig0034162:24621-24640 Msa1452800:CDS 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG + tig0034162:25165-25184 None:intergenic 20.0%
!! TACTTCTTCCAAATATTTAA+AGG - tig0034162:25166-25185 Msa1452800:intron 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG - tig0034162:25167-25186 Msa1452800:intron 20.0%
!! AACATTTCCCTTTAAATATT+TGG + tig0034162:25177-25196 None:intergenic 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG - tig0034162:25215-25234 Msa1452800:intron 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG - tig0034162:26317-26336 Msa1452800:intron 20.0%
!! TCTAATTAATATGTTAGTGT+AGG - tig0034162:26636-26655 Msa1452800:intron 20.0%
!! TTAACAAATGACTACAAATT+GGG + tig0034162:27191-27210 None:intergenic 20.0%
!!! TTCACATATTTTGAAAATAG+AGG + tig0034162:27368-27387 None:intergenic 20.0%
!! ATGGATTGAATACAATTTCA+CGG + tig0034162:24737-24756 None:intergenic 25.0%
! CAGAACATCAACATTTATAA+TGG + tig0034162:24943-24962 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG - tig0034162:24941-24960 Msa1452800:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG - tig0034162:25426-25445 Msa1452800:CDS 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG - tig0034162:25503-25522 Msa1452800:intron 25.0%
! GTATCAAATGGAATTATACA+TGG - tig0034162:25515-25534 Msa1452800:intron 25.0%
!! AGATAAATTTGGAATTGGAA+TGG + tig0034162:25843-25862 None:intergenic 25.0%
!! TACTCAGATAAATTTGGAAT+TGG + tig0034162:25848-25867 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG + tig0034162:25854-25873 None:intergenic 25.0%
!! TGAAAAAGGAAATTCCATTT+TGG + tig0034162:26107-26126 None:intergenic 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG - tig0034162:26198-26217 Msa1452800:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG - tig0034162:26199-26218 Msa1452800:intron 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG + tig0034162:26367-26386 None:intergenic 25.0%
! CCTAAATAACAAAGTGAAAA+TGG - tig0034162:26364-26383 Msa1452800:intron 25.0%
!! TAATTAGAGCATTAATGCTA+TGG + tig0034162:26624-26643 None:intergenic 25.0%
!! TTTTTCCTGATTATCAAGAA+AGG - tig0034162:26693-26712 Msa1452800:intron 25.0%
! GATAGATAGGTATATTTACT+AGG - tig0034162:26990-27009 Msa1452800:intron 25.0%
! TAGTGCATATTCTTAAATCA+CGG - tig0034162:27019-27038 Msa1452800:intron 25.0%
!! ATATAGGAGTTTTCTAAACT+AGG + tig0034162:27089-27108 None:intergenic 25.0%
! TATATGATATGACATGAACA+CGG - tig0034162:27104-27123 Msa1452800:intron 25.0%
! CTTAACAAATGACTACAAAT+TGG + tig0034162:27192-27211 None:intergenic 25.0%
!!! TATTGCTTGTTTTTTCAGAT+TGG - tig0034162:27248-27267 Msa1452800:intron 25.0%
!! AAGTATATATTTTGCTACAG+AGG - tig0034162:27437-27456 Msa1452800:CDS 25.0%
! ATTTCAAAAGCTCATATTTG+TGG - tig0034162:27573-27592 Msa1452800:intron 25.0%
!! CTGCAAATATAAGCTTTTTA+AGG + tig0034162:27630-27649 None:intergenic 25.0%
! CTTAAAAAGCTTATATTTGC+AGG - tig0034162:27628-27647 Msa1452800:intron 25.0%
AATGTAATGGTCAATTACCT+TGG + tig0034162:24591-24610 None:intergenic 30.0%
TGGATTGAATACAATTTCAC+GGG + tig0034162:24736-24755 None:intergenic 30.0%
CAATCCATTGTTCATTGAAA+TGG - tig0034162:24749-24768 Msa1452800:intron 30.0%
ACTACCATTTCAATGAACAA+TGG + tig0034162:24756-24775 None:intergenic 30.0%
AAATGGTAGTTTATACCGTT+TGG - tig0034162:24766-24785 Msa1452800:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG - tig0034162:24767-24786 Msa1452800:intron 30.0%
GTTCAGTTATATTACCCAAA+CGG + tig0034162:24784-24803 None:intergenic 30.0%
CAATGTAACAATATGTGTTG+TGG + tig0034162:25068-25087 None:intergenic 30.0%
AAATGTTAACAAGTGTCCTT+GGG - tig0034162:25190-25209 Msa1452800:intron 30.0%
AATATTTAACTAGTGCCCTA+AGG - tig0034162:25302-25321 Msa1452800:intron 30.0%
ATATTTAACTAGTGCCCTAA+GGG - tig0034162:25303-25322 Msa1452800:intron 30.0%
ACATATAACACAGATCTTTG+TGG - tig0034162:25576-25595 Msa1452800:CDS 30.0%
AGAGTTAAAAGAAGCCAAAA+TGG - tig0034162:26090-26109 Msa1452800:intron 30.0%
GTAAGAAGGTGAAAACTATT+GGG + tig0034162:26421-26440 None:intergenic 30.0%
AGTAAGAAGGTGAAAACTAT+TGG + tig0034162:26422-26441 None:intergenic 30.0%
TTCTTTGTACCATACTTGAT+TGG - tig0034162:26505-26524 Msa1452800:intron 30.0%
TCTTTGTACCATACTTGATT+GGG - tig0034162:26506-26525 Msa1452800:intron 30.0%
AGTATTTCCTTAGTGGTATT+GGG - tig0034162:26529-26548 Msa1452800:intron 30.0%
TATCAGCCATAAAAGCAATA+GGG + tig0034162:26756-26775 None:intergenic 30.0%
ATATCAGCCATAAAAGCAAT+AGG + tig0034162:26757-26776 None:intergenic 30.0%
! ATGTCAATCTCATTGATGAT+AGG - tig0034162:26926-26945 Msa1452800:intron 30.0%
TGTCGAATTTCACAAAATCA+TGG + tig0034162:27050-27069 None:intergenic 30.0%
GTGTTCATGTCATATCATAT+AGG + tig0034162:27105-27124 None:intergenic 30.0%
AAGTACCAATGTGAAGAAAT+AGG - tig0034162:27216-27235 Msa1452800:intron 30.0%
! CTTTACCTATTTCTTCACAT+TGG + tig0034162:27224-27243 None:intergenic 30.0%
AGAAGGTTTAACATATGACA+AGG - tig0034162:27299-27318 Msa1452800:intron 30.0%
TTAACATATGACAAGGTTGT+TGG - tig0034162:27306-27325 Msa1452800:intron 30.0%
GACAAAAATGCATAAACTTG+AGG + tig0034162:27608-27627 None:intergenic 30.0%
TTAACTTTCCGTTTCTCAAA+GGG - tig0034162:27919-27938 Msa1452800:five_prime_UTR 30.0%
!! TTTTGGTTGGAACAATTCTT+GGG + tig0034162:27981-28000 None:intergenic 30.0%
!!! ATTTTGGTTGGAACAATTCT+TGG + tig0034162:27982-28001 None:intergenic 30.0%
TGTAATTGTTCCAACCTCAT+TGG + tig0034162:24361-24380 None:intergenic 35.0%
TAAAGATGATGAGTAAGGCA+TGG + tig0034162:24429-24448 None:intergenic 35.0%
TTGGGTAAAGATGATGAGTA+AGG + tig0034162:24434-24453 None:intergenic 35.0%
!! TTTGGTGGTGATGATGATTA+TGG + tig0034162:24475-24494 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG + tig0034162:24517-24536 None:intergenic 35.0%
GGATTGAATACAATTTCACG+GGG + tig0034162:24735-24754 None:intergenic 35.0%
CTTGATCAACTGAGTGAAAT+TGG - tig0034162:24863-24882 Msa1452800:intron 35.0%
ATCAACTGAGTGAAATTGGT+TGG - tig0034162:24867-24886 Msa1452800:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG - tig0034162:24868-24887 Msa1452800:intron 35.0%
! GTGAAGTGTTAGTGCTATAT+AGG + tig0034162:25001-25020 None:intergenic 35.0%
TAACACTTCACTTCAGATTG+AGG - tig0034162:25010-25029 Msa1452800:CDS 35.0%
AACACTTCACTTCAGATTGA+GGG - tig0034162:25011-25030 Msa1452800:CDS 35.0%
GAAATGTTAACAAGTGTCCT+TGG - tig0034162:25189-25208 Msa1452800:intron 35.0%
AATGTTAACAAGTGTCCTTG+GGG - tig0034162:25191-25210 Msa1452800:intron 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG + tig0034162:25684-25703 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG + tig0034162:25685-25704 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG - tig0034162:25765-25784 Msa1452800:CDS 35.0%
AAGTGTGGATATAGCATTCA+TGG - tig0034162:25780-25799 Msa1452800:CDS 35.0%
AATTTGATGTCGCAATGAAG+CGG + tig0034162:25896-25915 None:intergenic 35.0%
CTACAGCTTGAAATTATGAC+TGG - tig0034162:25982-26001 Msa1452800:intron 35.0%
TAGCGATTGTTCAAAAGAAG+TGG + tig0034162:26163-26182 None:intergenic 35.0%
CAGAAGTTTAAGAATGTCCT+TGG - tig0034162:26282-26301 Msa1452800:intron 35.0%
! CACTTTTCACTTATCTACCA+AGG + tig0034162:26302-26321 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG + tig0034162:26346-26365 None:intergenic 35.0%
!! AGAGTTGATGAGAAGTAAGA+AGG + tig0034162:26435-26454 None:intergenic 35.0%
GAAATACTCCCAATCAAGTA+TGG + tig0034162:26517-26536 None:intergenic 35.0%
GAGTATTTCCTTAGTGGTAT+TGG - tig0034162:26528-26547 Msa1452800:intron 35.0%
TAAGAACTACGCTTACAAGT+TGG - tig0034162:26574-26593 Msa1452800:intron 35.0%
! GCAATCCTTTCTTGATAATC+AGG + tig0034162:26701-26720 None:intergenic 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG - tig0034162:26862-26881 Msa1452800:CDS 35.0%
TCCAGTGAATATCCCAAAAT+GGG + tig0034162:26892-26911 None:intergenic 35.0%
ATCCAGTGAATATCCCAAAA+TGG + tig0034162:26893-26912 None:intergenic 35.0%
TTGGGATATTCACTGGATAT+TGG - tig0034162:26895-26914 Msa1452800:intron 35.0%
CTTGAAAAGCTTCTCTATAG+TGG - tig0034162:26949-26968 Msa1452800:intron 35.0%
TTGATGCTAAGGAGATAGAT+AGG - tig0034162:26977-26996 Msa1452800:intron 35.0%
TTCTAAACTAGGTGTCTGTT+TGG + tig0034162:27078-27097 None:intergenic 35.0%
AGCAACAAAATCTCACTAGA+TGG - tig0034162:27497-27516 Msa1452800:intron 35.0%
GCAACAAAATCTCACTAGAT+GGG - tig0034162:27498-27517 Msa1452800:intron 35.0%
TCAAAAGCTCATATTTGTGG+AGG - tig0034162:27576-27595 Msa1452800:intron 35.0%
GTTAACTTTCCGTTTCTCAA+AGG - tig0034162:27918-27937 Msa1452800:five_prime_UTR 35.0%
CAGGTTGCAGTAGATAAGAA+AGG + tig0034162:24332-24351 None:intergenic 40.0%
ATTGTTCCAACCTCATTGGA+GGG + tig0034162:24357-24376 None:intergenic 40.0%
AATTGTTCCAACCTCATTGG+AGG + tig0034162:24358-24377 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG + tig0034162:24490-24509 None:intergenic 40.0%
! GGTTGATGTTGAAGCATGTT+TGG + tig0034162:24493-24512 None:intergenic 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG + tig0034162:24518-24537 None:intergenic 40.0%
ATGGTCAATTACCTTGGCAA+TGG + tig0034162:24585-24604 None:intergenic 40.0%
ACGAGGTTATACTCGATGAT+GGG - tig0034162:24638-24657 Msa1452800:CDS 40.0%
AGACAGCAATGCAGTTAAAG+AGG - tig0034162:24838-24857 Msa1452800:CDS 40.0%
AAATTGGTTGGGCCAAGAAA+TGG - tig0034162:24879-24898 Msa1452800:intron 40.0%
! ATGTTCTGGATAGATGCCAA+GGG - tig0034162:24955-24974 Msa1452800:intron 40.0%
TTGCTTATTGCTATGTCCCT+TGG + tig0034162:24974-24993 None:intergenic 40.0%
GGTGTATCTTACATGTGTTG+TGG - tig0034162:25032-25051 Msa1452800:intron 40.0%
CTTGTTAACCAATGCCCTTA+GGG + tig0034162:25320-25339 None:intergenic 40.0%
TCTTGTTAACCAATGCCCTT+AGG + tig0034162:25321-25340 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG + tig0034162:25392-25411 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG - tig0034162:25413-25432 Msa1452800:CDS 40.0%
TTCTGACACTAGGAATTGCA+AGG + tig0034162:25456-25475 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG + tig0034162:25466-25485 None:intergenic 40.0%
! GCTTTTCTCTTTACTGTGGT+TGG - tig0034162:25607-25626 Msa1452800:CDS 40.0%
TTTACTGTGGTTGGAACAAC+TGG - tig0034162:25616-25635 Msa1452800:CDS 40.0%
GTTGGAACAACTGGATTCTT+GGG - tig0034162:25625-25644 Msa1452800:CDS 40.0%
AACTGGATTCTTGGGTATTC+TGG - tig0034162:25633-25652 Msa1452800:CDS 40.0%
GCATTCATGGTTTCACATTG+TGG - tig0034162:25793-25812 Msa1452800:CDS 40.0%
AGCTTGAAATTATGACTGGC+AGG - tig0034162:25986-26005 Msa1452800:intron 40.0%
! GGTAGGCTTGTAGTCTTTTA+TGG - tig0034162:26019-26038 Msa1452800:intron 40.0%
ACTTGTGATGCAGGTGAAAA+AGG + tig0034162:26121-26140 None:intergenic 40.0%
GTAGACTAAACTTGTGATGC+AGG + tig0034162:26130-26149 None:intergenic 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG - tig0034162:26230-26249 Msa1452800:intron 40.0%
! TAATGCTTGTTGACTGATGC+AGG - tig0034162:26474-26493 Msa1452800:intron 40.0%
! TTGTTGACTGATGCAGGATT+GGG - tig0034162:26480-26499 Msa1452800:intron 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG - tig0034162:26522-26541 Msa1452800:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG - tig0034162:26535-26554 Msa1452800:intron 40.0%
AAAAGCTGCTAATAGCTGCT+TGG + tig0034162:26667-26686 None:intergenic 40.0%
TAGGGCAGTACTCAAAAAGT+GGG + tig0034162:26738-26757 None:intergenic 40.0%
ATAGGGCAGTACTCAAAAAG+TGG + tig0034162:26739-26758 None:intergenic 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG - tig0034162:26747-26766 Msa1452800:intron 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG - tig0034162:26888-26907 Msa1452800:CDS 40.0%
AACTAGGTGTCTGTTTGGAT+TGG + tig0034162:27073-27092 None:intergenic 40.0%
TATGACATGAACACGGAATG+TGG - tig0034162:27111-27130 Msa1452800:intron 40.0%
! CAGATTGGCTGTTGTATCAA+TGG - tig0034162:27263-27282 Msa1452800:intron 40.0%
GAAAATAGAGGTCTCAAACC+TGG + tig0034162:27356-27375 None:intergenic 40.0%
ATCTTTGCTGAGTTGTGGTT+TGG + tig0034162:27476-27495 None:intergenic 40.0%
!! ACTCTAGCTCTAGAGATCAA+TGG + tig0034162:27952-27971 None:intergenic 40.0%
CTCTGGTTGTGAATTTAGGG+AGG + tig0034162:24514-24533 None:intergenic 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG + tig0034162:24565-24584 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG - tig0034162:24571-24590 Msa1452800:CDS 45.0%
CACGAGGTTATACTCGATGA+TGG - tig0034162:24637-24656 Msa1452800:CDS 45.0%
CGAGGTTATACTCGATGATG+GGG - tig0034162:24639-24658 Msa1452800:CDS 45.0%
TGGCTGAGAACTCCATTTCT+TGG + tig0034162:24894-24913 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG - tig0034162:24910-24929 Msa1452800:intron 45.0%
ACCGTACGACGTGAAACATA+TGG + tig0034162:24914-24933 None:intergenic 45.0%
! GATGTTCTGGATAGATGCCA+AGG - tig0034162:24954-24973 Msa1452800:intron 45.0%
ACTTCTTAACAAGTGCCCCA+AGG + tig0034162:25209-25228 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG + tig0034162:25387-25406 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG - tig0034162:25412-25431 Msa1452800:CDS 45.0%
AACACAGATCTTTGTGGTGC+AGG - tig0034162:25582-25601 Msa1452800:CDS 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG - tig0034162:25603-25622 Msa1452800:CDS 45.0%
GGTTGGAACAACTGGATTCT+TGG - tig0034162:25624-25643 Msa1452800:CDS 45.0%
ATTATGACTGGCAGGCCATT+TGG - tig0034162:25994-26013 Msa1452800:intron 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG - tig0034162:26231-26250 Msa1452800:intron 45.0%
! CTTGTTGACTGATGCAGGAT+TGG - tig0034162:26479-26498 Msa1452800:intron 45.0%
! TGTTGACTGATGCAGGATTG+GGG - tig0034162:26481-26500 Msa1452800:intron 45.0%
GCCTATACCCAATACCACTA+AGG + tig0034162:26539-26558 None:intergenic 45.0%
TGTAAGCGTAGTTCTTACCC+AGG + tig0034162:26571-26590 None:intergenic 45.0%
GCTATGGCAAACACTGAAGA+GGG + tig0034162:26608-26627 None:intergenic 45.0%
TGCTATGGCAAACACTGAAG+AGG + tig0034162:26609-26628 None:intergenic 45.0%
! TCTGCTTGGCTTACCCATTT+TGG - tig0034162:26876-26895 Msa1452800:CDS 45.0%
! CTGCTTGGCTTACCCATTTT+GGG - tig0034162:26877-26896 Msa1452800:CDS 45.0%
TAGTGGTCAGCTTGATGCTA+AGG - tig0034162:26966-26985 Msa1452800:intron 45.0%
TTGGCTGTTGTATCAATGGC+TGG - tig0034162:27267-27286 Msa1452800:intron 45.0%
TGTTGTATCAATGGCTGGAC+TGG - tig0034162:27272-27291 Msa1452800:intron 45.0%
! TGCTGATCTTTTCACTCTCC+AGG - tig0034162:27335-27354 Msa1452800:intron 45.0%
TGCTGATCTTTGCTGAGTTG+TGG + tig0034162:27481-27500 None:intergenic 45.0%
GTCGATCCATGAAGCCTTAA+TGG - tig0034162:27685-27704 Msa1452800:intron 45.0%
TCGATGCCATTAAGGCTTCA+TGG + tig0034162:27694-27713 None:intergenic 45.0%
! TGAAGCCTTAATGGCATCGA+TGG - tig0034162:27694-27713 Msa1452800:intron 45.0%
CTTTGCCATCGATGCCATTA+AGG + tig0034162:27702-27721 None:intergenic 45.0%
!! AATGGCATCGATGGCAAAGA+AGG - tig0034162:27703-27722 Msa1452800:intron 45.0%
CTTTCCGTTTCTCAAAGGGA+AGG - tig0034162:27923-27942 Msa1452800:five_prime_UTR 45.0%
! GAGTCCTTCCCTTTGAGAAA+CGG + tig0034162:27930-27949 None:intergenic 45.0%
!! CTCGATGATGGGGAACATGA+AGG - tig0034162:24649-24668 Msa1452800:intron 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG - tig0034162:25309-25328 Msa1452800:intron 50.0%
GGATTCTTGGGTATTCTGGC+TGG - tig0034162:25637-25656 Msa1452800:CDS 50.0%
AGTGCAAGGGATACATACCC+CGG + tig0034162:25671-25690 None:intergenic 50.0%
CTACAAGCCTACCAGCCAAA+TGG + tig0034162:26012-26031 None:intergenic 50.0%
TGAGCCCGTCAACTTCAAAG+AGG + tig0034162:26238-26257 None:intergenic 50.0%
GTATAGGCAGCACATCTCCT+GGG - tig0034162:26551-26570 Msa1452800:intron 50.0%
TGCAGCAGAGGAAGAAGCTC+TGG + tig0034162:24531-24550 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG + tig0034162:24554-24573 None:intergenic 55.0%
GTGCAAGGGATACATACCCC+GGG + tig0034162:25670-25689 None:intergenic 55.0%
GGTATAGGCAGCACATCTCC+TGG - tig0034162:26550-26569 Msa1452800:intron 55.0%
GCAACCTGCACCCTCCAATG+AGG - tig0034162:24344-24363 Msa1452800:three_prime_UTR 60.0%
! CCAACCTCATTGGAGGGTGC+AGG + tig0034162:24351-24370 None:intergenic 60.0%
CCTGCACCCTCCAATGAGGT+TGG - tig0034162:24348-24367 Msa1452800:three_prime_UTR 60.0%
GCTTCTTCCTCTGCTGCACC+TGG - tig0034162:24533-24552 Msa1452800:exon 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG - tig0034162:25649-25668 Msa1452800:intron 60.0%
GGATACATACCCCGGGAAGC+TGG + tig0034162:25663-25682 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG - tig0034162:25998-26017 Msa1452800:intron 60.0%
TGGCAGGCCATTTGGCTGGT+AGG - tig0034162:26002-26021 Msa1452800:intron 60.0%
!! ATGGCTGGACTGGCAGCAGA+AGG - tig0034162:27282-27301 Msa1452800:intron 60.0%
GTCGACACCAGGTGCAGCAG+AGG + tig0034162:24543-24562 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG - tig0034162:25650-25669 Msa1452800:intron 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG - tig0034162:25651-25670 Msa1452800:intron 70.0%
Chromosome Type Strat End Strand Name
tig0034162 gene 24306 28009 24306 ID=Msa1452800;Name=Msa1452800
tig0034162 mRNA 24306 28009 24306 ID=Msa1452800-mRNA-1;Parent=Msa1452800;Name=Msa1452800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=107|1|1|1|1|1|10|240|330
tig0034162 exon 24306 24665 24306 ID=Msa1452800-mRNA-1:exon:18814;Parent=Msa1452800-mRNA-1
tig0034162 exon 24793 24858 24793 ID=Msa1452800-mRNA-1:exon:18813;Parent=Msa1452800-mRNA-1
tig0034162 exon 24959 25049 24959 ID=Msa1452800-mRNA-1:exon:18812;Parent=Msa1452800-mRNA-1
tig0034162 exon 25317 25446 25317 ID=Msa1452800-mRNA-1:exon:18811;Parent=Msa1452800-mRNA-1
tig0034162 exon 25569 25657 25569 ID=Msa1452800-mRNA-1:exon:18810;Parent=Msa1452800-mRNA-1
tig0034162 exon 25743 25819 25743 ID=Msa1452800-mRNA-1:exon:18809;Parent=Msa1452800-mRNA-1
tig0034162 exon 26643 26711 26643 ID=Msa1452800-mRNA-1:exon:18808;Parent=Msa1452800-mRNA-1
tig0034162 exon 26835 26909 26835 ID=Msa1452800-mRNA-1:exon:18807;Parent=Msa1452800-mRNA-1
tig0034162 exon 27384 27479 27384 ID=Msa1452800-mRNA-1:exon:18806;Parent=Msa1452800-mRNA-1
tig0034162 exon 27723 28009 27723 ID=Msa1452800-mRNA-1:exon:18805;Parent=Msa1452800-mRNA-1
tig0034162 five_prime_UTR 27903 28009 27903 ID=Msa1452800-mRNA-1:five_prime_utr;Parent=Msa1452800-mRNA-1
tig0034162 CDS 27723 27902 27723 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 27384 27479 27384 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 26835 26909 26835 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 26643 26711 26643 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 25743 25819 25743 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 25569 25657 25569 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 25317 25446 25317 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 24959 25049 24959 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 24793 24858 24793 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 CDS 24546 24665 24546 ID=Msa1452800-mRNA-1:cds;Parent=Msa1452800-mRNA-1
tig0034162 three_prime_UTR 24306 24545 24306 ID=Msa1452800-mRNA-1:three_prime_utr;Parent=Msa1452800-mRNA-1
Gene Sequence

>Msa1452800

ATGTTGATCACAACCATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGACATCACTTCGAGAGCTGACAACTTTAGGGATTAAAAATGCGGAGAACCTTGCAATTCCTAGTGTCAGAAATGATGCAGCTTTTCTCTTTACTGTGGTTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGGCTTCTCCAAGCAGCTATTAGCAGCTTTTCAGTTGTTTTTCCTGATTATCAAGAAAGGATTGCTAGACATGAAGCAGCCCACTTTTTGATTGCTTATCTGCTTGGCTTACCCATTTTGGGATATTCACTGGATATTGGAAAAGAGCATGTCAATCTCATTGATGATAGGCTTGAAAAGCTTCTCTATAGTGGTCAGCTTGATGCTAAGGAGATAGATAGATTGGCTGTTGTATCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTTGTTGGTCAATCTGCTGATCTTTTCACTCTCCAGAGGTTTATAAACAGAACCAAACCACAACTCAGCAAAGATCAGCAACAAAATCTCACTAGATGGGCAGTTTTGTTCGCTGCTTCTCTATTGAAAAACAACAAGTCGATCCATGAAGCCTTAATGGCATCGATGGCAAAGAAGGCAAGTGTACTCGAGTGCATTCAAACAATCGAAAGTGCATCATAG

Protein sequence

>Msa1452800

MLITTMPYSSSLPKPYYNFYHNHHHHQTCFNINLPKFTTRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGLLQAAISSFSVVFPDYQERIARHEAAHFLIAYLLGLPILGYSLDIGKEHVNLIDDRLEKLLYSGQLDAKEIDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKSIHEALMASMAKKASVLECIQTIESAS*