AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520480 MtrunA17_Chr3g0136201 95.261 211 10 0 1 211 1 211 2.44e-143 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520480 AT5G21430.1 55.738 183 77 3 32 210 35 217 1.90e-62 194
Msa0520480 AT5G21430.2 55.191 183 77 4 32 210 35 216 5.59e-60 187

Find 69 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTCCCCTGTTCATTCTT+TGG 0.213829 3_4:-73019755 None:intergenic
ATTAAAGAAGATGATTCTTT+TGG 0.261740 3_4:-73018625 None:intergenic
TTATGGTTTATAAAATTATC+TGG 0.266697 3_4:+73019861 Msa0520480:three_prime_UTR
AGACATACTTAACAAGAAAT+TGG 0.280104 3_4:+73019060 Msa0520480:CDS
AATTCATTGCAGCCCTCTTA+TGG 0.284290 3_4:+73019844 Msa0520480:three_prime_UTR
ATTGGAGAGTCAAGGTTTAG+AGG 0.312619 3_4:+73019036 Msa0520480:CDS
GCCATTTGAGGTTGATGTTT+CGG 0.315689 3_4:+73019279 Msa0520480:CDS
AAGTCCCCTGTTCATTCTTT+GGG 0.321452 3_4:-73019754 None:intergenic
TAATAACAAGGTTCGAGAAT+TGG 0.322385 3_4:+73019018 Msa0520480:CDS
CTAGCATTTGTGTTATCAAT+TGG 0.334884 3_4:+73019518 Msa0520480:CDS
ATTACAGATGCAGATCATTA+TGG 0.366825 3_4:+73018775 Msa0520480:CDS
TTATCTCCCAAAGAATGAAC+AGG 0.401092 3_4:+73019748 Msa0520480:three_prime_UTR
TGTGTCTGTGTTATCTTCTC+TGG 0.408544 3_4:-73019248 None:intergenic
ACCTTGTTATTATAAGCAAT+TGG 0.411448 3_4:-73019007 None:intergenic
CACATACGTTTGGCCATTTG+AGG 0.421335 3_4:+73019267 Msa0520480:CDS
AAACCAGAGAACTGTGCAAA+AGG 0.422750 3_4:-73019725 None:intergenic
TGGACTAAACTTATAGAAAC+AGG 0.427220 3_4:+73019538 Msa0520480:exon
TCATACATTCTTCTTTCATC+CGG 0.438615 3_4:-73019214 None:intergenic
ATGTTTCTGACCATGTCATA+TGG 0.442154 3_4:-73018823 None:intergenic
TTGCTTGGAGTGTTGTTACT+TGG 0.444787 3_4:-73018478 None:intergenic
GTTGAGAATCCTAGCTTGCT+TGG 0.458033 3_4:-73018493 None:intergenic
CTGGTTGGTCCTACATCCTC+AGG 0.458680 3_4:-73019461 None:intergenic
ACCGAAACATCAACCTCAAA+TGG 0.480733 3_4:-73019280 None:intergenic
AACCAGAGAACTGTGCAAAA+GGG 0.485744 3_4:-73019724 None:intergenic
TTAGTTTAACAAAGAGTGAA+AGG 0.497310 3_4:-73019786 None:intergenic
TCCATTCCATGTGAACCTGC+AGG 0.509635 3_4:+73018293 None:intergenic
ATGAAATCAAACAATAAGCA+TGG 0.513183 3_4:-73018361 None:intergenic
GGTTGTCGATAACACATTTG+TGG 0.520598 3_4:+73018314 Msa0520480:five_prime_UTR
GCAAATTGTAGTGGTGGTTG+TGG 0.522565 3_4:-73018452 None:intergenic
GCAGATCATTATGGTAGACT+TGG 0.523390 3_4:+73018784 Msa0520480:CDS
TAGTTTAACAAAGAGTGAAA+GGG 0.529442 3_4:-73019785 None:intergenic
AGCTCTAGTGAAAACTCTGC+AGG 0.533335 3_4:+73018565 Msa0520480:CDS
TAGAAAGTATCCAACCAGTC+TGG 0.536223 3_4:-73019480 None:intergenic
CTGGTTGGATACTTTCTAGC+GGG 0.536918 3_4:+73019485 Msa0520480:CDS
GAAACAATGATATAATGTAA+TGG 0.538453 3_4:+73019611 Msa0520480:three_prime_UTR
ATAACACAGACACATACGTT+TGG 0.539673 3_4:+73019257 Msa0520480:CDS
ATGAAAGAAGAATGTATGAC+TGG 0.543817 3_4:+73019218 Msa0520480:CDS
GATGTTTCGGTACTTCAAGA+AGG 0.552371 3_4:+73019292 Msa0520480:CDS
ATGTCATATGGACATCCTCT+TGG 0.556234 3_4:-73018811 None:intergenic
ATGTGTTATCGACAACCTGC+AGG 0.563997 3_4:-73018308 None:intergenic
TTGGATACTTTCTAGCGGGA+TGG 0.565729 3_4:+73019489 Msa0520480:CDS
GTAATTAGTACCTGTGGTGG+AGG 0.566183 3_4:-73019319 None:intergenic
GTTCGAGAATTGGAGAGTCA+AGG 0.571210 3_4:+73019028 Msa0520480:CDS
TGAAATCAAACAATAAGCAT+GGG 0.576535 3_4:-73018360 None:intergenic
GTAGGACCAACCAGACTGGT+TGG 0.579118 3_4:+73019470 Msa0520480:CDS
TGAAAACTCTGCAGGTTCAA+CGG 0.580415 3_4:+73018573 Msa0520480:CDS
AATAAATGAAAACTTAGCAA+TGG 0.584133 3_4:+73018420 Msa0520480:exon
CAAGTAATTAGTACCTGTGG+TGG 0.590198 3_4:-73019322 None:intergenic
GGATGTAGGACCAACCAGAC+TGG 0.590754 3_4:+73019466 Msa0520480:CDS
TGGCAGGAACCTGAGGATGT+AGG 0.592315 3_4:+73019452 Msa0520480:intron
AACAACACTCCAAGCAAGCT+AGG 0.601547 3_4:+73018484 Msa0520480:CDS
ATACACTATCATGTCATCGC+CGG 0.604771 3_4:+73019195 Msa0520480:CDS
GCCAATTGCTTATAATAACA+AGG 0.606196 3_4:+73019006 Msa0520480:CDS
AGTGGTGGTTGTGGAGGACA+AGG 0.610731 3_4:-73018443 None:intergenic
TATCTCCCAAAGAATGAACA+GGG 0.615745 3_4:+73019749 Msa0520480:three_prime_UTR
AGGTTCAACGGAGGTTGAGT+CGG 0.620899 3_4:+73018585 Msa0520480:CDS
AAGTATCCAACCAGTCTGGT+TGG 0.621927 3_4:-73019476 None:intergenic
AGAAGGAGATCCTCCACCAC+AGG 0.633320 3_4:+73019309 Msa0520480:CDS
TGGAATGCAAATTGTAGTGG+TGG 0.639229 3_4:-73018458 None:intergenic
ACTTGGAATGCAAATTGTAG+TGG 0.640752 3_4:-73018461 None:intergenic
GGTAGACTTGGCTTACCAAG+AGG 0.643717 3_4:+73018796 Msa0520480:CDS
TGGAAAACATACGTATGCCA+CGG 0.651444 3_4:-73018675 None:intergenic
AATTGTAGTGGTGGTTGTGG+AGG 0.652259 3_4:-73018449 None:intergenic
AAGAGGATGTCCATATGACA+TGG 0.675165 3_4:+73018813 Msa0520480:CDS
GCATGGGTGAGATAATGCAA+TGG 0.675351 3_4:-73018344 None:intergenic
ACTGGTTGGATACTTTCTAG+CGG 0.691428 3_4:+73019484 Msa0520480:CDS
ATCTCCCAAAGAATGAACAG+GGG 0.692806 3_4:+73019750 Msa0520480:three_prime_UTR
AACGTCGAAAGAGCTCTCCG+TGG 0.728158 3_4:+73018658 Msa0520480:CDS
AAACTCTGCAGGTTCAACGG+AGG 0.732304 3_4:+73018576 Msa0520480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAACAACAACATTA+TGG - chr3_4:73018698-73018717 None:intergenic 15.0%
!!! ATATCATTGTTTCTTTTTTT+GGG - chr3_4:73019604-73019623 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG - chr3_4:73019605-73019624 None:intergenic 15.0%
!!! TAATTTTATAAACCATAAGA+GGG - chr3_4:73019859-73019878 None:intergenic 15.0%
!!! ATAATTTTATAAACCATAAG+AGG - chr3_4:73019860-73019879 None:intergenic 15.0%
!! TTATGGTTTATAAAATTATC+TGG + chr3_4:73019861-73019880 Msa0520480:three_prime_UTR 15.0%
!! TATGGTTTATAAAATTATCT+GGG + chr3_4:73019862-73019881 Msa0520480:three_prime_UTR 15.0%
!! ATATAATAACAACAACATTA+TGG - chr3_4:73018698-73018717 None:intergenic 15.0%
!!! ATATCATTGTTTCTTTTTTT+GGG - chr3_4:73019604-73019623 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG - chr3_4:73019605-73019624 None:intergenic 15.0%
!!! TAATTTTATAAACCATAAGA+GGG - chr3_4:73019859-73019878 None:intergenic 15.0%
!!! ATAATTTTATAAACCATAAG+AGG - chr3_4:73019860-73019879 None:intergenic 15.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG - chr3_4:73018421-73018440 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG + chr3_4:73018420-73018439 Msa0520480:exon 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG - chr3_4:73018628-73018647 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG + chr3_4:73019414-73019433 Msa0520480:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG - chr3_4:73019603-73019622 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG + chr3_4:73019611-73019630 Msa0520480:three_prime_UTR 20.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG - chr3_4:73018421-73018440 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG + chr3_4:73018420-73018439 Msa0520480:exon 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG - chr3_4:73018628-73018647 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG + chr3_4:73019414-73019433 Msa0520480:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG - chr3_4:73019603-73019622 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG + chr3_4:73019611-73019630 Msa0520480:three_prime_UTR 20.0%
! TGAAATCAAACAATAAGCAT+GGG - chr3_4:73018363-73018382 None:intergenic 25.0%
! ATGAAATCAAACAATAAGCA+TGG - chr3_4:73018364-73018383 None:intergenic 25.0%
! GAATTGAATTGATGAAGATA+TGG + chr3_4:73018738-73018757 Msa0520480:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG + chr3_4:73018833-73018852 Msa0520480:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG + chr3_4:73018852-73018871 Msa0520480:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG - chr3_4:73019010-73019029 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG + chr3_4:73019060-73019079 Msa0520480:CDS 25.0%
! TGTGTTTGCATCATTATTAT+AGG + chr3_4:73019124-73019143 Msa0520480:intron 25.0%
! TTGGTTAACCTTAATTGTAT+AGG + chr3_4:73019168-73019187 Msa0520480:intron 25.0%
! GTATGATTCCTATACAATTA+AGG - chr3_4:73019179-73019198 None:intergenic 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG + chr3_4:73019345-73019364 Msa0520480:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG - chr3_4:73019427-73019446 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG - chr3_4:73019602-73019621 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG - chr3_4:73019704-73019723 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG - chr3_4:73019788-73019807 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG - chr3_4:73019789-73019808 None:intergenic 25.0%
! TGAAATCAAACAATAAGCAT+GGG - chr3_4:73018363-73018382 None:intergenic 25.0%
! ATGAAATCAAACAATAAGCA+TGG - chr3_4:73018364-73018383 None:intergenic 25.0%
! GAATTGAATTGATGAAGATA+TGG + chr3_4:73018738-73018757 Msa0520480:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG + chr3_4:73018833-73018852 Msa0520480:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG + chr3_4:73018852-73018871 Msa0520480:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG - chr3_4:73019010-73019029 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG + chr3_4:73019060-73019079 Msa0520480:CDS 25.0%
! TGTGTTTGCATCATTATTAT+AGG + chr3_4:73019124-73019143 Msa0520480:intron 25.0%
! TTGGTTAACCTTAATTGTAT+AGG + chr3_4:73019168-73019187 Msa0520480:intron 25.0%
! GTATGATTCCTATACAATTA+AGG - chr3_4:73019179-73019198 None:intergenic 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG + chr3_4:73019345-73019364 Msa0520480:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG - chr3_4:73019427-73019446 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG - chr3_4:73019602-73019621 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG - chr3_4:73019704-73019723 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG - chr3_4:73019788-73019807 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG - chr3_4:73019789-73019808 None:intergenic 25.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG + chr3_4:73018527-73018546 Msa0520480:CDS 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG - chr3_4:73018617-73018636 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG + chr3_4:73018775-73018794 Msa0520480:CDS 30.0%
GCCAATTGCTTATAATAACA+AGG + chr3_4:73019006-73019025 Msa0520480:CDS 30.0%
TAATAACAAGGTTCGAGAAT+TGG + chr3_4:73019018-73019037 Msa0520480:CDS 30.0%
TCATACATTCTTCTTTCATC+CGG - chr3_4:73019217-73019236 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG + chr3_4:73019218-73019237 Msa0520480:CDS 30.0%
AAACAAGTAATTAGTACCTG+TGG - chr3_4:73019328-73019347 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG + chr3_4:73019432-73019451 Msa0520480:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG + chr3_4:73019518-73019537 Msa0520480:CDS 30.0%
TGGACTAAACTTATAGAAAC+AGG + chr3_4:73019538-73019557 Msa0520480:exon 30.0%
!!! TCATTGTTTCTTTTTTTGGG+GGG - chr3_4:73019601-73019620 None:intergenic 30.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG + chr3_4:73018527-73018546 Msa0520480:CDS 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG - chr3_4:73018617-73018636 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG + chr3_4:73018775-73018794 Msa0520480:CDS 30.0%
GCCAATTGCTTATAATAACA+AGG + chr3_4:73019006-73019025 Msa0520480:CDS 30.0%
TAATAACAAGGTTCGAGAAT+TGG + chr3_4:73019018-73019037 Msa0520480:CDS 30.0%
TCATACATTCTTCTTTCATC+CGG - chr3_4:73019217-73019236 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG + chr3_4:73019218-73019237 Msa0520480:CDS 30.0%
AAACAAGTAATTAGTACCTG+TGG - chr3_4:73019328-73019347 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG + chr3_4:73019432-73019451 Msa0520480:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG + chr3_4:73019518-73019537 Msa0520480:CDS 30.0%
TGGACTAAACTTATAGAAAC+AGG + chr3_4:73019538-73019557 Msa0520480:exon 30.0%
!!! TCATTGTTTCTTTTTTTGGG+GGG - chr3_4:73019601-73019620 None:intergenic 30.0%
ACTTGGAATGCAAATTGTAG+TGG - chr3_4:73018464-73018483 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG - chr3_4:73018826-73018845 None:intergenic 35.0%
ATGTCACTCTACACTTTAAC+AGG + chr3_4:73018982-73019001 Msa0520480:intron 35.0%
TATTATAGGTGAGACTTGAG+AGG + chr3_4:73019138-73019157 Msa0520480:intron 35.0%
ATAACACAGACACATACGTT+TGG + chr3_4:73019257-73019276 Msa0520480:CDS 35.0%
! CTATTTCTCAACTTCTTAGG+AGG + chr3_4:73019348-73019367 Msa0520480:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG + chr3_4:73019436-73019455 Msa0520480:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG + chr3_4:73019748-73019767 Msa0520480:three_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG + chr3_4:73019749-73019768 Msa0520480:three_prime_UTR 35.0%
ACTTGGAATGCAAATTGTAG+TGG - chr3_4:73018464-73018483 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG - chr3_4:73018826-73018845 None:intergenic 35.0%
ATGTCACTCTACACTTTAAC+AGG + chr3_4:73018982-73019001 Msa0520480:intron 35.0%
TATTATAGGTGAGACTTGAG+AGG + chr3_4:73019138-73019157 Msa0520480:intron 35.0%
ATAACACAGACACATACGTT+TGG + chr3_4:73019257-73019276 Msa0520480:CDS 35.0%
! CTATTTCTCAACTTCTTAGG+AGG + chr3_4:73019348-73019367 Msa0520480:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG + chr3_4:73019436-73019455 Msa0520480:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG + chr3_4:73019748-73019767 Msa0520480:three_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG + chr3_4:73019749-73019768 Msa0520480:three_prime_UTR 35.0%
GGTTGTCGATAACACATTTG+TGG + chr3_4:73018314-73018333 Msa0520480:five_prime_UTR 40.0%
TGGAATGCAAATTGTAGTGG+TGG - chr3_4:73018461-73018480 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG - chr3_4:73018481-73018500 None:intergenic 40.0%
TGAAAACTCTGCAGGTTCAA+CGG + chr3_4:73018573-73018592 Msa0520480:CDS 40.0%
TGGAAAACATACGTATGCCA+CGG - chr3_4:73018678-73018697 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG + chr3_4:73018784-73018803 Msa0520480:CDS 40.0%
ATGTCATATGGACATCCTCT+TGG - chr3_4:73018814-73018833 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG + chr3_4:73018813-73018832 Msa0520480:CDS 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG + chr3_4:73019036-73019055 Msa0520480:CDS 40.0%
ATACACTATCATGTCATCGC+CGG + chr3_4:73019195-73019214 Msa0520480:CDS 40.0%
TGTGTCTGTGTTATCTTCTC+TGG - chr3_4:73019251-73019270 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG + chr3_4:73019279-73019298 Msa0520480:CDS 40.0%
ACCGAAACATCAACCTCAAA+TGG - chr3_4:73019283-73019302 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG + chr3_4:73019292-73019311 Msa0520480:CDS 40.0%
CAAGTAATTAGTACCTGTGG+TGG - chr3_4:73019325-73019344 None:intergenic 40.0%
!! AACTTCTTAGGAGGTGTTTG+AGG + chr3_4:73019357-73019376 Msa0520480:intron 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG - chr3_4:73019483-73019502 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG + chr3_4:73019484-73019503 Msa0520480:CDS 40.0%
AACCAGAGAACTGTGCAAAA+GGG - chr3_4:73019727-73019746 None:intergenic 40.0%
AAACCAGAGAACTGTGCAAA+AGG - chr3_4:73019728-73019747 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG + chr3_4:73019750-73019769 Msa0520480:three_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG - chr3_4:73019757-73019776 None:intergenic 40.0%
AATTCATTGCAGCCCTCTTA+TGG + chr3_4:73019844-73019863 Msa0520480:three_prime_UTR 40.0%
GGTTGTCGATAACACATTTG+TGG + chr3_4:73018314-73018333 Msa0520480:five_prime_UTR 40.0%
TGGAATGCAAATTGTAGTGG+TGG - chr3_4:73018461-73018480 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG - chr3_4:73018481-73018500 None:intergenic 40.0%
TGAAAACTCTGCAGGTTCAA+CGG + chr3_4:73018573-73018592 Msa0520480:CDS 40.0%
TGGAAAACATACGTATGCCA+CGG - chr3_4:73018678-73018697 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG + chr3_4:73018784-73018803 Msa0520480:CDS 40.0%
ATGTCATATGGACATCCTCT+TGG - chr3_4:73018814-73018833 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG + chr3_4:73018813-73018832 Msa0520480:CDS 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG + chr3_4:73019036-73019055 Msa0520480:CDS 40.0%
ATACACTATCATGTCATCGC+CGG + chr3_4:73019195-73019214 Msa0520480:CDS 40.0%
TGTGTCTGTGTTATCTTCTC+TGG - chr3_4:73019251-73019270 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG + chr3_4:73019279-73019298 Msa0520480:CDS 40.0%
ACCGAAACATCAACCTCAAA+TGG - chr3_4:73019283-73019302 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG + chr3_4:73019292-73019311 Msa0520480:CDS 40.0%
CAAGTAATTAGTACCTGTGG+TGG - chr3_4:73019325-73019344 None:intergenic 40.0%
!! AACTTCTTAGGAGGTGTTTG+AGG + chr3_4:73019357-73019376 Msa0520480:intron 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG - chr3_4:73019483-73019502 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG + chr3_4:73019484-73019503 Msa0520480:CDS 40.0%
AACCAGAGAACTGTGCAAAA+GGG - chr3_4:73019727-73019746 None:intergenic 40.0%
AAACCAGAGAACTGTGCAAA+AGG - chr3_4:73019728-73019747 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG + chr3_4:73019750-73019769 Msa0520480:three_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG - chr3_4:73019757-73019776 None:intergenic 40.0%
AATTCATTGCAGCCCTCTTA+TGG + chr3_4:73019844-73019863 Msa0520480:three_prime_UTR 40.0%
ATGTGTTATCGACAACCTGC+AGG - chr3_4:73018311-73018330 None:intergenic 45.0%
GCATGGGTGAGATAATGCAA+TGG - chr3_4:73018347-73018366 None:intergenic 45.0%
AATTGTAGTGGTGGTTGTGG+AGG - chr3_4:73018452-73018471 None:intergenic 45.0%
GCAAATTGTAGTGGTGGTTG+TGG - chr3_4:73018455-73018474 None:intergenic 45.0%
AACAACACTCCAAGCAAGCT+AGG + chr3_4:73018484-73018503 Msa0520480:CDS 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG - chr3_4:73018496-73018515 None:intergenic 45.0%
! AGCTCTAGTGAAAACTCTGC+AGG + chr3_4:73018565-73018584 Msa0520480:CDS 45.0%
GTTCGAGAATTGGAGAGTCA+AGG + chr3_4:73019028-73019047 Msa0520480:CDS 45.0%
TATAGGTGAGACTTGAGAGG+TGG + chr3_4:73019141-73019160 Msa0520480:intron 45.0%
AGACTTGAGAGGTGGTGATT+TGG + chr3_4:73019149-73019168 Msa0520480:intron 45.0%
CACATACGTTTGGCCATTTG+AGG + chr3_4:73019267-73019286 Msa0520480:CDS 45.0%
GTAATTAGTACCTGTGGTGG+AGG - chr3_4:73019322-73019341 None:intergenic 45.0%
!! TTCTTAGGAGGTGTTTGAGG+TGG + chr3_4:73019360-73019379 Msa0520480:intron 45.0%
CAGGTTCCTGCCATGAAAAT+TGG - chr3_4:73019445-73019464 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG + chr3_4:73019445-73019464 Msa0520480:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG - chr3_4:73019479-73019498 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG + chr3_4:73019485-73019504 Msa0520480:CDS 45.0%
! TTGGATACTTTCTAGCGGGA+TGG + chr3_4:73019489-73019508 Msa0520480:CDS 45.0%
! TTCCCTTTTGCACAGTTCTC+TGG + chr3_4:73019722-73019741 Msa0520480:three_prime_UTR 45.0%
CAAGTCCCCTGTTCATTCTT+TGG - chr3_4:73019758-73019777 None:intergenic 45.0%
ATGTGTTATCGACAACCTGC+AGG - chr3_4:73018311-73018330 None:intergenic 45.0%
GCATGGGTGAGATAATGCAA+TGG - chr3_4:73018347-73018366 None:intergenic 45.0%
AATTGTAGTGGTGGTTGTGG+AGG - chr3_4:73018452-73018471 None:intergenic 45.0%
GCAAATTGTAGTGGTGGTTG+TGG - chr3_4:73018455-73018474 None:intergenic 45.0%
AACAACACTCCAAGCAAGCT+AGG + chr3_4:73018484-73018503 Msa0520480:CDS 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG - chr3_4:73018496-73018515 None:intergenic 45.0%
! AGCTCTAGTGAAAACTCTGC+AGG + chr3_4:73018565-73018584 Msa0520480:CDS 45.0%
GTTCGAGAATTGGAGAGTCA+AGG + chr3_4:73019028-73019047 Msa0520480:CDS 45.0%
TATAGGTGAGACTTGAGAGG+TGG + chr3_4:73019141-73019160 Msa0520480:intron 45.0%
AGACTTGAGAGGTGGTGATT+TGG + chr3_4:73019149-73019168 Msa0520480:intron 45.0%
CACATACGTTTGGCCATTTG+AGG + chr3_4:73019267-73019286 Msa0520480:CDS 45.0%
GTAATTAGTACCTGTGGTGG+AGG - chr3_4:73019322-73019341 None:intergenic 45.0%
!! TTCTTAGGAGGTGTTTGAGG+TGG + chr3_4:73019360-73019379 Msa0520480:intron 45.0%
CAGGTTCCTGCCATGAAAAT+TGG - chr3_4:73019445-73019464 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG + chr3_4:73019445-73019464 Msa0520480:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG - chr3_4:73019479-73019498 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG + chr3_4:73019485-73019504 Msa0520480:CDS 45.0%
! TTGGATACTTTCTAGCGGGA+TGG + chr3_4:73019489-73019508 Msa0520480:CDS 45.0%
! TTCCCTTTTGCACAGTTCTC+TGG + chr3_4:73019722-73019741 Msa0520480:three_prime_UTR 45.0%
CAAGTCCCCTGTTCATTCTT+TGG - chr3_4:73019758-73019777 None:intergenic 45.0%
AAACTCTGCAGGTTCAACGG+AGG + chr3_4:73018576-73018595 Msa0520480:CDS 50.0%
AGGTTCAACGGAGGTTGAGT+CGG + chr3_4:73018585-73018604 Msa0520480:CDS 50.0%
GGTAGACTTGGCTTACCAAG+AGG + chr3_4:73018796-73018815 Msa0520480:CDS 50.0%
AAACTCTGCAGGTTCAACGG+AGG + chr3_4:73018576-73018595 Msa0520480:CDS 50.0%
AGGTTCAACGGAGGTTGAGT+CGG + chr3_4:73018585-73018604 Msa0520480:CDS 50.0%
GGTAGACTTGGCTTACCAAG+AGG + chr3_4:73018796-73018815 Msa0520480:CDS 50.0%
AGTGGTGGTTGTGGAGGACA+AGG - chr3_4:73018446-73018465 None:intergenic 55.0%
AACGTCGAAAGAGCTCTCCG+TGG + chr3_4:73018658-73018677 Msa0520480:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG + chr3_4:73019309-73019328 Msa0520480:CDS 55.0%
TGGCAGGAACCTGAGGATGT+AGG + chr3_4:73019452-73019471 Msa0520480:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG - chr3_4:73019464-73019483 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG + chr3_4:73019466-73019485 Msa0520480:CDS 55.0%
GTAGGACCAACCAGACTGGT+TGG + chr3_4:73019470-73019489 Msa0520480:CDS 55.0%
AGTGGTGGTTGTGGAGGACA+AGG - chr3_4:73018446-73018465 None:intergenic 55.0%
AACGTCGAAAGAGCTCTCCG+TGG + chr3_4:73018658-73018677 Msa0520480:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG + chr3_4:73019309-73019328 Msa0520480:CDS 55.0%
TGGCAGGAACCTGAGGATGT+AGG + chr3_4:73019452-73019471 Msa0520480:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG - chr3_4:73019464-73019483 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG + chr3_4:73019466-73019485 Msa0520480:CDS 55.0%
GTAGGACCAACCAGACTGGT+TGG + chr3_4:73019470-73019489 Msa0520480:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73018303 73019883 73018303 ID=Msa0520480;Name=Msa0520480
chr3_4 mRNA 73018303 73019883 73018303 ID=Msa0520480-mRNA-1;Parent=Msa0520480;Name=Msa0520480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136|1|1|1|1|1|5|330|211
chr3_4 exon 73018303 73018685 73018303 ID=Msa0520480-mRNA-1:exon:20317;Parent=Msa0520480-mRNA-1
chr3_4 exon 73018773 73018834 73018773 ID=Msa0520480-mRNA-1:exon:20318;Parent=Msa0520480-mRNA-1
chr3_4 exon 73019004 73019093 73019004 ID=Msa0520480-mRNA-1:exon:20319;Parent=Msa0520480-mRNA-1
chr3_4 exon 73019190 73019330 73019190 ID=Msa0520480-mRNA-1:exon:20320;Parent=Msa0520480-mRNA-1
chr3_4 exon 73019458 73019883 73019458 ID=Msa0520480-mRNA-1:exon:20321;Parent=Msa0520480-mRNA-1
chr3_4 five_prime_UTR 73018303 73018438 73018303 ID=Msa0520480-mRNA-1:five_prime_utr;Parent=Msa0520480-mRNA-1
chr3_4 CDS 73018439 73018685 73018439 ID=Msa0520480-mRNA-1:cds;Parent=Msa0520480-mRNA-1
chr3_4 CDS 73018773 73018834 73018773 ID=Msa0520480-mRNA-1:cds;Parent=Msa0520480-mRNA-1
chr3_4 CDS 73019004 73019093 73019004 ID=Msa0520480-mRNA-1:cds;Parent=Msa0520480-mRNA-1
chr3_4 CDS 73019190 73019330 73019190 ID=Msa0520480-mRNA-1:cds;Parent=Msa0520480-mRNA-1
chr3_4 CDS 73019458 73019553 73019458 ID=Msa0520480-mRNA-1:cds;Parent=Msa0520480-mRNA-1
chr3_4 three_prime_UTR 73019554 73019883 73019554 ID=Msa0520480-mRNA-1:three_prime_utr;Parent=Msa0520480-mRNA-1
Gene Sequence

>Msa0520480

ATGGCCTTGTCCTCCACAACCACCACTACAATTTGCATTCCAAGTAACAACACTCCAAGCAAGCTAGGATTCTCAACTAATAACATTGTTTTTTCTGTAAAACAAGCGCGGAAACTATGTATCAGAAGCTCTAGTGAAAACTCTGCAGGTTCAACGGAGGTTGAGTCGGAGAGTTCCATTGAACTTCCAAAAGAATCATCTTCTTTAATTTCTGTTCTCAACGTCGAAAGAGCTCTCCGTGGCATACCTATTACAGATGCAGATCATTATGGTAGACTTGGCTTACCAAGAGGATGTCCATATGACATGGTGCCAATTGCTTATAATAACAAGGTTCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGACATACTTAACAAGAAATTGGAACTTCTCAGAGAATCATACACTATCATGTCATCGCCGGATGAAAGAAGAATGTATGACTGGAGCTTGTCCAGAGAAGATAACACAGACACATACGTTTGGCCATTTGAGGTTGATGTTTCGGTACTTCAAGAAGGAGATCCTCCACCACAGGAACCTGAGGATGTAGGACCAACCAGACTGGTTGGATACTTTCTAGCGGGATGGATACTGCTAGCATTTGTGTTATCAATTGGACTAAACTTATAG

Protein sequence

>Msa0520480

MALSSTTTTTICIPSNNTPSKLGFSTNNIVFSVKQARKLCIRSSSENSAGSTEVESESSIELPKESSSLISVLNVERALRGIPITDADHYGRLGLPRGCPYDMVPIAYNNKVRELESQGLEEDILNKKLELLRESYTIMSSPDERRMYDWSLSREDNTDTYVWPFEVDVSVLQEGDPPPQEPEDVGPTRLVGYFLAGWILLAFVLSIGLNL*