AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0704790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704790 MtrunA17_Chr8g0383001 97.619 336 2 1 1 330 1 336 0.0 668
Msa0704790 MtrunA17_Chr2g0310591 35.088 171 99 2 166 327 218 385 1.82e-21 94.0
Msa0704790 MtrunA17_Chr7g0273361 28.931 159 100 3 182 329 178 334 5.94e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704790 AT2G21960.1 83.039 283 48 0 48 330 50 332 2.73e-172 481
Msa0704790 AT1G56180.1 32.143 168 105 1 171 329 217 384 1.34e-19 89.0
Msa0704790 AT5G27290.1 31.447 159 96 4 182 329 179 335 6.63e-14 72.0

Find 88 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 4_4:-77285041 Msa0704790:CDS
GAAGCTCTGGTTGTGAATTT+AGG 0.115841 4_4:+77287402 None:intergenic
GAAGAACTCATGTTCAATTT+TGG 0.162931 4_4:+77283922 None:intergenic
CTTCGAGAGCTGACAACTTT+AGG 0.199826 4_4:-77286505 Msa0704790:CDS
GTCGATCCATGAAGCCTTAA+TGG 0.219380 4_4:-77284232 Msa0704790:CDS
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 4_4:-77286268 Msa0704790:CDS
ATCCAGTGAATATCCCAAAA+TGG 0.251435 4_4:+77285027 None:intergenic
TTCGAGAGCTGACAACTTTA+GGG 0.257197 4_4:-77286504 Msa0704790:CDS
AACTGGATTCTTGGGTATTC+TGG 0.263208 4_4:-77286284 Msa0704790:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 4_4:-77287054 Msa0704790:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 4_4:-77286267 Msa0704790:CDS
GCAATCCTTTCTTGATAATC+AGG 0.293245 4_4:+77285219 None:intergenic
AAGCTCTGGTTGTGAATTTA+GGG 0.294762 4_4:+77287403 None:intergenic
TTGGGATATTCACTGGATAT+TGG 0.298796 4_4:-77285022 Msa0704790:CDS
TTCTTTGTACCATACTTGAT+TGG 0.309773 4_4:-77285412 Msa0704790:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 4_4:-77285388 Msa0704790:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 4_4:+77287026 None:intergenic
TTTACTGTGGTTGGAACAAC+TGG 0.327694 4_4:-77286301 Msa0704790:CDS
ATCTTTGCTGAGTTGTGGTT+TGG 0.340177 4_4:+77284444 None:intergenic
GGTTGGAACAACTGGATTCT+TGG 0.341417 4_4:-77286293 Msa0704790:CDS
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 4_4:-77285055 Msa0704790:intron
CTTTGCCATCGATGCCATTA+AGG 0.360946 4_4:+77284218 None:intergenic
AGCAACAAAATCTCACTAGA+TGG 0.367508 4_4:-77284420 Msa0704790:CDS
TTTGGTGGTGATGATGATTA+TGG 0.373375 4_4:+77287445 None:intergenic
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 4_4:-77285389 Msa0704790:CDS
GGTTGATGTTGAAGCATGTT+TGG 0.383493 4_4:+77287427 None:intergenic
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 4_4:-77285382 Msa0704790:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 4_4:+77285403 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 4_4:-77285395 Msa0704790:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 4_4:-77285411 Msa0704790:CDS
TGTAATTGTTCCAACCTCAT+TGG 0.410517 4_4:+77287559 None:intergenic
TGCAGCAGAGGAAGAAGCTC+TGG 0.413680 4_4:+77287389 None:intergenic
CAGATTGGCTGTTGTATCAA+TGG 0.423423 4_4:-77284654 Msa0704790:CDS
TCGATGCCATTAAGGCTTCA+TGG 0.429892 4_4:+77284226 None:intergenic
TGTTGTATCAATGGCTGGAC+TGG 0.438705 4_4:-77284645 Msa0704790:CDS
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 4_4:-77287038 Msa0704790:CDS
TGAGAGTTGAGAAGCTTTGT+GGG 0.445509 4_4:+77287614 None:intergenic
TCCAGTGAATATCCCAAAAT+GGG 0.449171 4_4:+77285028 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 4_4:-77287384 Msa0704790:CDS
TTAACATATGACAAGGTTGT+TGG 0.456845 4_4:-77284611 Msa0704790:CDS
ATGTCAATCTCATTGATGAT+AGG 0.463698 4_4:-77284991 Msa0704790:CDS
GAGTCCTTCCCTTTGAGAAA+CGG 0.465517 4_4:+77283990 None:intergenic
TTGAGAGTTGAGAAGCTTTG+TGG 0.466186 4_4:+77287613 None:intergenic
TTAACTTTCCGTTTCTCAAA+GGG 0.467194 4_4:-77283998 Msa0704790:three_prime_UTR
CCAACCTCATTGGAGGGTGC+AGG 0.470174 4_4:+77287569 None:intergenic
TGCTGATCTTTGCTGAGTTG+TGG 0.475443 4_4:+77284439 None:intergenic
GTTGGAACAACTGGATTCTT+GGG 0.483037 4_4:-77286292 Msa0704790:CDS
CTTGAAAAGCTTCTCTATAG+TGG 0.485483 4_4:-77284968 Msa0704790:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 4_4:-77286280 Msa0704790:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 4_4:+77286257 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 4_4:-77287079 Msa0704790:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 4_4:-77285367 Msa0704790:CDS
TTGATGCTAAGGAGATAGAT+AGG 0.494421 4_4:-77284940 Msa0704790:intron
AATGGCATCGATGGCAAAGA+AGG 0.499709 4_4:-77284214 Msa0704790:CDS
GTCGACACCAGGTGCAGCAG+AGG 0.506013 4_4:+77287377 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 4_4:+77287006 None:intergenic
TTGGCTGTTGTATCAATGGC+TGG 0.512860 4_4:-77284650 Msa0704790:CDS
ACTCTAGCTCTAGAGATCAA+TGG 0.513577 4_4:+77283968 None:intergenic
TGTTGACTGATGCAGGATTG+GGG 0.521890 4_4:-77285436 Msa0704790:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 4_4:-77287007 Msa0704790:intron
TAGTGGTCAGCTTGATGCTA+AGG 0.529877 4_4:-77284951 Msa0704790:CDS
TTGGGTAAAGATGATGAGTA+AGG 0.530143 4_4:+77287486 None:intergenic
AATTGTTCCAACCTCATTGG+AGG 0.533072 4_4:+77287562 None:intergenic
ATCAACTGAGTGAAATTGGT+TGG 0.534376 4_4:-77287050 Msa0704790:CDS
GTTAACTTTCCGTTTCTCAA+AGG 0.534587 4_4:-77283999 Msa0704790:three_prime_UTR
GCCTATACCCAATACCACTA+AGG 0.541332 4_4:+77285381 None:intergenic
TGAAGCCTTAATGGCATCGA+TGG 0.543498 4_4:-77284223 Msa0704790:CDS
TCAACTGAGTGAAATTGGTT+GGG 0.547534 4_4:-77287049 Msa0704790:CDS
AAAAGCTGCTAATAGCTGCT+TGG 0.552163 4_4:+77285253 None:intergenic
CCTGCACCCTCCAATGAGGT+TGG 0.557721 4_4:-77287569 Msa0704790:five_prime_UTR
TTCTGACACTAGGAATTGCA+AGG 0.566777 4_4:+77286464 None:intergenic
TGATGTTGAAGCATGTTTGG+TGG 0.574649 4_4:+77287430 None:intergenic
CAGGTTGCAGTAGATAAGAA+AGG 0.575092 4_4:+77287588 None:intergenic
GCAACAAAATCTCACTAGAT+GGG 0.575785 4_4:-77284419 Msa0704790:CDS
CTTTCCGTTTCTCAAAGGGA+AGG 0.577870 4_4:-77283994 Msa0704790:three_prime_UTR
TCTTGATTCTGCCATTGCCA+AGG 0.579069 4_4:-77287346 Msa0704790:intron
CTCTGGTTGTGAATTTAGGG+AGG 0.583321 4_4:+77287406 None:intergenic
ATGGTCAATTACCTTGGCAA+TGG 0.596299 4_4:+77287335 None:intergenic
CTCACATCATTTCTGACACT+AGG 0.596674 4_4:+77286454 None:intergenic
ATTGTTCCAACCTCATTGGA+GGG 0.600354 4_4:+77287563 None:intergenic
ATGGCTGGACTGGCAGCAGA+AGG 0.600695 4_4:-77284635 Msa0704790:CDS
AGAGTGTTGAGGTCGACACC+AGG 0.613261 4_4:+77287366 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 4_4:-77286266 Msa0704790:intron
GTATAGGCAGCACATCTCCT+GGG 0.621976 4_4:-77285366 Msa0704790:intron
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 4_4:+77287355 None:intergenic
GCAACCTGCACCCTCCAATG+AGG 0.659790 4_4:-77287573 Msa0704790:five_prime_UTR
AGAAGGTTTAACATATGACA+AGG 0.674545 4_4:-77284618 Msa0704790:CDS
TAAAGATGATGAGTAAGGCA+TGG 0.722574 4_4:+77287491 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG + chr4_4:77284076-77284095 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG + chr4_4:77284082-77284101 None:intergenic 10.0%
!! GTAAAAATTATAATATGGTT+TGG + chr4_4:77284077-77284096 None:intergenic 15.0%
!! ACTTCAAATAAAAAATGTAA+TGG + chr4_4:77284228-77284247 None:intergenic 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG - chr4_4:77284853-77284872 Msa0704790:intron 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG - chr4_4:77284854-77284873 Msa0704790:intron 15.0%
!! GCATATGAATATTTAAATAT+GGG + chr4_4:77284968-77284987 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG + chr4_4:77284969-77284988 None:intergenic 15.0%
!! GTTAACACAAATAAAAAAAA+TGG + chr4_4:77287528-77287547 None:intergenic 15.0%
!! AGTTATATAAAAATTACACG+AGG - chr4_4:77284245-77284264 Msa0704790:CDS 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG + chr4_4:77284789-77284808 None:intergenic 20.0%
!! TACTTCTTCCAAATATTTAA+AGG - chr4_4:77284790-77284809 Msa0704790:intron 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG - chr4_4:77284791-77284810 Msa0704790:intron 20.0%
!! AACATTTCCCTTTAAATATT+TGG + chr4_4:77284801-77284820 None:intergenic 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG - chr4_4:77284839-77284858 Msa0704790:intron 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG - chr4_4:77285941-77285960 Msa0704790:intron 20.0%
!! TCTAATTAATATGTTAGTGT+AGG - chr4_4:77286260-77286279 Msa0704790:intron 20.0%
!! TTAACAAATGACTACAAATT+GGG + chr4_4:77286815-77286834 None:intergenic 20.0%
!!! TTCACATATTTTGAAAATAG+AGG + chr4_4:77286992-77287011 None:intergenic 20.0%
!! ATGGATTGAATACAATTTCA+CGG + chr4_4:77284361-77284380 None:intergenic 25.0%
! CAGAACATCAACATTTATAA+TGG + chr4_4:77284567-77284586 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG - chr4_4:77284565-77284584 Msa0704790:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG - chr4_4:77285050-77285069 Msa0704790:CDS 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG - chr4_4:77285127-77285146 Msa0704790:intron 25.0%
! GTATCAAATGGAATTATACA+TGG - chr4_4:77285139-77285158 Msa0704790:intron 25.0%
!! AGATAAATTTGGAATTGGAA+TGG + chr4_4:77285467-77285486 None:intergenic 25.0%
!! TACTCAGATAAATTTGGAAT+TGG + chr4_4:77285472-77285491 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG + chr4_4:77285478-77285497 None:intergenic 25.0%
!! TGAAAAAGGAAATTCCATTT+TGG + chr4_4:77285731-77285750 None:intergenic 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG - chr4_4:77285822-77285841 Msa0704790:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG - chr4_4:77285823-77285842 Msa0704790:intron 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG + chr4_4:77285991-77286010 None:intergenic 25.0%
! CCTAAATAACAAAGTGAAAA+TGG - chr4_4:77285988-77286007 Msa0704790:intron 25.0%
!! TAATTAGAGCATTAATGCTA+TGG + chr4_4:77286248-77286267 None:intergenic 25.0%
!! TTTTTCCTGATTATCAAGAA+AGG - chr4_4:77286317-77286336 Msa0704790:intron 25.0%
! GATAGATAGGTATATTTACT+AGG - chr4_4:77286614-77286633 Msa0704790:intron 25.0%
! TAGTGCATATTCTTAAATCA+CGG - chr4_4:77286643-77286662 Msa0704790:intron 25.0%
!! ATATAGGAGTTTTCTAAACT+AGG + chr4_4:77286713-77286732 None:intergenic 25.0%
! TATATGATATGACATGAACA+CGG - chr4_4:77286728-77286747 Msa0704790:intron 25.0%
! CTTAACAAATGACTACAAAT+TGG + chr4_4:77286816-77286835 None:intergenic 25.0%
!!! TATTGCTTGTTTTTTCAGAT+TGG - chr4_4:77286872-77286891 Msa0704790:intron 25.0%
!! AAGTATATATTTTGCTACAG+AGG - chr4_4:77287061-77287080 Msa0704790:CDS 25.0%
! ATTTCAAAAGCTCATATTTG+TGG - chr4_4:77287197-77287216 Msa0704790:intron 25.0%
!! CTGCAAATATAAGCTTTTTA+AGG + chr4_4:77287254-77287273 None:intergenic 25.0%
! CTTAAAAAGCTTATATTTGC+AGG - chr4_4:77287252-77287271 Msa0704790:intron 25.0%
AATGTAATGGTCAATTACCT+TGG + chr4_4:77284215-77284234 None:intergenic 30.0%
TGGATTGAATACAATTTCAC+GGG + chr4_4:77284360-77284379 None:intergenic 30.0%
CAATCCATTGTTCATTGAAA+TGG - chr4_4:77284373-77284392 Msa0704790:intron 30.0%
ACTACCATTTCAATGAACAA+TGG + chr4_4:77284380-77284399 None:intergenic 30.0%
AAATGGTAGTTTATACCGTT+TGG - chr4_4:77284390-77284409 Msa0704790:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG - chr4_4:77284391-77284410 Msa0704790:intron 30.0%
GTTCAGTTATATTACCCAAA+CGG + chr4_4:77284408-77284427 None:intergenic 30.0%
CAATGTAACAATATGTGTTG+TGG + chr4_4:77284692-77284711 None:intergenic 30.0%
AATATTTAACTAGTGCCCTA+AGG - chr4_4:77284926-77284945 Msa0704790:intron 30.0%
ATATTTAACTAGTGCCCTAA+GGG - chr4_4:77284927-77284946 Msa0704790:intron 30.0%
ACATATAACACAGATCTTTG+TGG - chr4_4:77285200-77285219 Msa0704790:CDS 30.0%
AGAGTTAAAAGAAGCCAAAA+TGG - chr4_4:77285714-77285733 Msa0704790:intron 30.0%
GTAAGAAGGTGAAAACTATT+GGG + chr4_4:77286045-77286064 None:intergenic 30.0%
AGTAAGAAGGTGAAAACTAT+TGG + chr4_4:77286046-77286065 None:intergenic 30.0%
TTCTTTGTACCATACTTGAT+TGG - chr4_4:77286129-77286148 Msa0704790:intron 30.0%
TCTTTGTACCATACTTGATT+GGG - chr4_4:77286130-77286149 Msa0704790:intron 30.0%
AGTATTTCCTTAGTGGTATT+GGG - chr4_4:77286153-77286172 Msa0704790:intron 30.0%
TATCAGCCATAAAAGCAATA+GGG + chr4_4:77286380-77286399 None:intergenic 30.0%
ATATCAGCCATAAAAGCAAT+AGG + chr4_4:77286381-77286400 None:intergenic 30.0%
! ATGTCAATCTCATTGATGAT+AGG - chr4_4:77286550-77286569 Msa0704790:intron 30.0%
TGTCGAATTTCACAAAATCA+TGG + chr4_4:77286674-77286693 None:intergenic 30.0%
GTGTTCATGTCATATCATAT+AGG + chr4_4:77286729-77286748 None:intergenic 30.0%
AAGTACCAATGTGAAGAAAT+AGG - chr4_4:77286840-77286859 Msa0704790:intron 30.0%
! CTTTACCTATTTCTTCACAT+TGG + chr4_4:77286848-77286867 None:intergenic 30.0%
AGAAGGTTTAACATATGACA+AGG - chr4_4:77286923-77286942 Msa0704790:intron 30.0%
TTAACATATGACAAGGTTGT+TGG - chr4_4:77286930-77286949 Msa0704790:intron 30.0%
GACAAAAATGCATAAACTTG+AGG + chr4_4:77287232-77287251 None:intergenic 30.0%
TTAACTTTCCGTTTCTCAAA+GGG - chr4_4:77287543-77287562 Msa0704790:five_prime_UTR 30.0%
!! TTTTGGTTGGAACAATTCTT+GGG + chr4_4:77287605-77287624 None:intergenic 30.0%
!!! ATTTTGGTTGGAACAATTCT+TGG + chr4_4:77287606-77287625 None:intergenic 30.0%
TGTAATTGTTCCAACCTCAT+TGG + chr4_4:77283985-77284004 None:intergenic 35.0%
TAAAGATGATGAGTAAGGCA+TGG + chr4_4:77284053-77284072 None:intergenic 35.0%
TTGGGTAAAGATGATGAGTA+AGG + chr4_4:77284058-77284077 None:intergenic 35.0%
!! TTTGGTGGTGATGATGATTA+TGG + chr4_4:77284099-77284118 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG + chr4_4:77284141-77284160 None:intergenic 35.0%
GGATTGAATACAATTTCACG+GGG + chr4_4:77284359-77284378 None:intergenic 35.0%
CTTGATCAACTGAGTGAAAT+TGG - chr4_4:77284487-77284506 Msa0704790:intron 35.0%
ATCAACTGAGTGAAATTGGT+TGG - chr4_4:77284491-77284510 Msa0704790:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG - chr4_4:77284492-77284511 Msa0704790:intron 35.0%
! GTGAAGTGTTAGTGCTATAT+AGG + chr4_4:77284625-77284644 None:intergenic 35.0%
TAACACTTCACTTCAGATTG+AGG - chr4_4:77284634-77284653 Msa0704790:CDS 35.0%
AACACTTCACTTCAGATTGA+GGG - chr4_4:77284635-77284654 Msa0704790:CDS 35.0%
AAATGTTAACAAGTGCCCTT+GGG - chr4_4:77284814-77284833 Msa0704790:intron 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG + chr4_4:77285308-77285327 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG + chr4_4:77285309-77285328 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG - chr4_4:77285389-77285408 Msa0704790:CDS 35.0%
AAGTGTGGATATAGCATTCA+TGG - chr4_4:77285404-77285423 Msa0704790:CDS 35.0%
AATTTGATGTCGCAATGAAG+CGG + chr4_4:77285520-77285539 None:intergenic 35.0%
CTACAGCTTGAAATTATGAC+TGG - chr4_4:77285606-77285625 Msa0704790:intron 35.0%
TAGCGATTGTTCAAAAGAAG+TGG + chr4_4:77285787-77285806 None:intergenic 35.0%
CAGAAGTTTAAGAATGTCCT+TGG - chr4_4:77285906-77285925 Msa0704790:intron 35.0%
! CACTTTTCACTTATCTACCA+AGG + chr4_4:77285926-77285945 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG + chr4_4:77285970-77285989 None:intergenic 35.0%
!! AGAGTTGATGAGAAGTAAGA+AGG + chr4_4:77286059-77286078 None:intergenic 35.0%
GAAATACTCCCAATCAAGTA+TGG + chr4_4:77286141-77286160 None:intergenic 35.0%
GAGTATTTCCTTAGTGGTAT+TGG - chr4_4:77286152-77286171 Msa0704790:intron 35.0%
TAAGAACTACGCTTACAAGT+TGG - chr4_4:77286198-77286217 Msa0704790:intron 35.0%
! GCAATCCTTTCTTGATAATC+AGG + chr4_4:77286325-77286344 None:intergenic 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG - chr4_4:77286486-77286505 Msa0704790:CDS 35.0%
TCCAGTGAATATCCCAAAAT+GGG + chr4_4:77286516-77286535 None:intergenic 35.0%
ATCCAGTGAATATCCCAAAA+TGG + chr4_4:77286517-77286536 None:intergenic 35.0%
TTGGGATATTCACTGGATAT+TGG - chr4_4:77286519-77286538 Msa0704790:intron 35.0%
CTTGAAAAGCTTCTCTATAG+TGG - chr4_4:77286573-77286592 Msa0704790:intron 35.0%
TTGATGCTAAGGAGATAGAT+AGG - chr4_4:77286601-77286620 Msa0704790:intron 35.0%
TTCTAAACTAGGTGTCTGTT+TGG + chr4_4:77286702-77286721 None:intergenic 35.0%
AGCAACAAAATCTCACTAGA+TGG - chr4_4:77287121-77287140 Msa0704790:intron 35.0%
GCAACAAAATCTCACTAGAT+GGG - chr4_4:77287122-77287141 Msa0704790:intron 35.0%
TCAAAAGCTCATATTTGTGG+AGG - chr4_4:77287200-77287219 Msa0704790:intron 35.0%
GTTAACTTTCCGTTTCTCAA+AGG - chr4_4:77287542-77287561 Msa0704790:five_prime_UTR 35.0%
CAGGTTGCAGTAGATAAGAA+AGG + chr4_4:77283956-77283975 None:intergenic 40.0%
ATTGTTCCAACCTCATTGGA+GGG + chr4_4:77283981-77284000 None:intergenic 40.0%
AATTGTTCCAACCTCATTGG+AGG + chr4_4:77283982-77284001 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG + chr4_4:77284114-77284133 None:intergenic 40.0%
! GGTTGATGTTGAAGCATGTT+TGG + chr4_4:77284117-77284136 None:intergenic 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG + chr4_4:77284142-77284161 None:intergenic 40.0%
ATGGTCAATTACCTTGGCAA+TGG + chr4_4:77284209-77284228 None:intergenic 40.0%
ACGAGGTTATACTCGATGAT+GGG - chr4_4:77284262-77284281 Msa0704790:CDS 40.0%
AGACAGCAATGCAGTTAAAG+AGG - chr4_4:77284462-77284481 Msa0704790:CDS 40.0%
AAATTGGTTGGGCCAAGAAA+TGG - chr4_4:77284503-77284522 Msa0704790:intron 40.0%
! ATGTTCTGGATAGATGCCAA+GGG - chr4_4:77284579-77284598 Msa0704790:intron 40.0%
TTGCTTATTGCTATGTCCCT+TGG + chr4_4:77284598-77284617 None:intergenic 40.0%
GGTGTATCTTACATGTGTTG+TGG - chr4_4:77284656-77284675 Msa0704790:intron 40.0%
GAAATGTTAACAAGTGCCCT+TGG - chr4_4:77284813-77284832 Msa0704790:intron 40.0%
AATGTTAACAAGTGCCCTTG+GGG - chr4_4:77284815-77284834 Msa0704790:intron 40.0%
CTTGTTAACCAATGCCCTTA+GGG + chr4_4:77284944-77284963 None:intergenic 40.0%
TCTTGTTAACCAATGCCCTT+AGG + chr4_4:77284945-77284964 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG + chr4_4:77285016-77285035 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG - chr4_4:77285037-77285056 Msa0704790:CDS 40.0%
TTCTGACACTAGGAATTGCA+AGG + chr4_4:77285080-77285099 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG + chr4_4:77285090-77285109 None:intergenic 40.0%
! GCTTTTCTCTTTACTGTGGT+TGG - chr4_4:77285231-77285250 Msa0704790:CDS 40.0%
TTTACTGTGGTTGGAACAAC+TGG - chr4_4:77285240-77285259 Msa0704790:CDS 40.0%
GTTGGAACAACTGGATTCTT+GGG - chr4_4:77285249-77285268 Msa0704790:CDS 40.0%
AACTGGATTCTTGGGTATTC+TGG - chr4_4:77285257-77285276 Msa0704790:CDS 40.0%
GCATTCATGGTTTCACATTG+TGG - chr4_4:77285417-77285436 Msa0704790:CDS 40.0%
AGCTTGAAATTATGACTGGC+AGG - chr4_4:77285610-77285629 Msa0704790:intron 40.0%
! GGTAGGCTTGTAGTCTTTTA+TGG - chr4_4:77285643-77285662 Msa0704790:intron 40.0%
ACTTGTGATGCAGGTGAAAA+AGG + chr4_4:77285745-77285764 None:intergenic 40.0%
GTAGACTAAACTTGTGATGC+AGG + chr4_4:77285754-77285773 None:intergenic 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG - chr4_4:77285854-77285873 Msa0704790:intron 40.0%
! TAATGCTTGTTGACTGATGC+AGG - chr4_4:77286098-77286117 Msa0704790:intron 40.0%
! TTGTTGACTGATGCAGGATT+GGG - chr4_4:77286104-77286123 Msa0704790:intron 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG - chr4_4:77286146-77286165 Msa0704790:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG - chr4_4:77286159-77286178 Msa0704790:intron 40.0%
AAAAGCTGCTAATAGCTGCT+TGG + chr4_4:77286291-77286310 None:intergenic 40.0%
TAGGGCAGTACTCAAAAAGT+GGG + chr4_4:77286362-77286381 None:intergenic 40.0%
ATAGGGCAGTACTCAAAAAG+TGG + chr4_4:77286363-77286382 None:intergenic 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG - chr4_4:77286371-77286390 Msa0704790:intron 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG - chr4_4:77286512-77286531 Msa0704790:CDS 40.0%
AACTAGGTGTCTGTTTGGAT+TGG + chr4_4:77286697-77286716 None:intergenic 40.0%
TATGACATGAACACGGAATG+TGG - chr4_4:77286735-77286754 Msa0704790:intron 40.0%
! CAGATTGGCTGTTGTATCAA+TGG - chr4_4:77286887-77286906 Msa0704790:intron 40.0%
GAAAATAGAGGTCTCAAACC+TGG + chr4_4:77286980-77286999 None:intergenic 40.0%
ATCTTTGCTGAGTTGTGGTT+TGG + chr4_4:77287100-77287119 None:intergenic 40.0%
!! ACTCTAGCTCTAGAGATCAA+TGG + chr4_4:77287576-77287595 None:intergenic 40.0%
CTCTGGTTGTGAATTTAGGG+AGG + chr4_4:77284138-77284157 None:intergenic 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG + chr4_4:77284189-77284208 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG - chr4_4:77284195-77284214 Msa0704790:CDS 45.0%
CACGAGGTTATACTCGATGA+TGG - chr4_4:77284261-77284280 Msa0704790:CDS 45.0%
CGAGGTTATACTCGATGATG+GGG - chr4_4:77284263-77284282 Msa0704790:CDS 45.0%
TGGCTGAGAACTCCATTTCT+TGG + chr4_4:77284518-77284537 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG - chr4_4:77284534-77284553 Msa0704790:intron 45.0%
ACCGTACGACGTGAAACATA+TGG + chr4_4:77284538-77284557 None:intergenic 45.0%
! GATGTTCTGGATAGATGCCA+AGG - chr4_4:77284578-77284597 Msa0704790:intron 45.0%
CTTCTTAACAAGTGCCCCAA+GGG + chr4_4:77284832-77284851 None:intergenic 45.0%
ACTTCTTAACAAGTGCCCCA+AGG + chr4_4:77284833-77284852 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG + chr4_4:77285011-77285030 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG - chr4_4:77285036-77285055 Msa0704790:CDS 45.0%
AACACAGATCTTTGTGGTGC+AGG - chr4_4:77285206-77285225 Msa0704790:CDS 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG - chr4_4:77285227-77285246 Msa0704790:CDS 45.0%
GGTTGGAACAACTGGATTCT+TGG - chr4_4:77285248-77285267 Msa0704790:CDS 45.0%
ATTATGACTGGCAGGCCATT+TGG - chr4_4:77285618-77285637 Msa0704790:intron 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG - chr4_4:77285855-77285874 Msa0704790:intron 45.0%
! CTTGTTGACTGATGCAGGAT+TGG - chr4_4:77286103-77286122 Msa0704790:intron 45.0%
! TGTTGACTGATGCAGGATTG+GGG - chr4_4:77286105-77286124 Msa0704790:intron 45.0%
GCCTATACCCAATACCACTA+AGG + chr4_4:77286163-77286182 None:intergenic 45.0%
TGTAAGCGTAGTTCTTACCC+AGG + chr4_4:77286195-77286214 None:intergenic 45.0%
GCTATGGCAAACACTGAAGA+GGG + chr4_4:77286232-77286251 None:intergenic 45.0%
TGCTATGGCAAACACTGAAG+AGG + chr4_4:77286233-77286252 None:intergenic 45.0%
! TCTGCTTGGCTTACCCATTT+TGG - chr4_4:77286500-77286519 Msa0704790:CDS 45.0%
! CTGCTTGGCTTACCCATTTT+GGG - chr4_4:77286501-77286520 Msa0704790:CDS 45.0%
TAGTGGTCAGCTTGATGCTA+AGG - chr4_4:77286590-77286609 Msa0704790:intron 45.0%
TTGGCTGTTGTATCAATGGC+TGG - chr4_4:77286891-77286910 Msa0704790:intron 45.0%
TGTTGTATCAATGGCTGGAC+TGG - chr4_4:77286896-77286915 Msa0704790:intron 45.0%
! TGCTGATCTTTTCACTCTCC+AGG - chr4_4:77286959-77286978 Msa0704790:intron 45.0%
TGCTGATCTTTGCTGAGTTG+TGG + chr4_4:77287105-77287124 None:intergenic 45.0%
GTCGATCCATGAAGCCTTAA+TGG - chr4_4:77287309-77287328 Msa0704790:intron 45.0%
TCGATGCCATTAAGGCTTCA+TGG + chr4_4:77287318-77287337 None:intergenic 45.0%
! TGAAGCCTTAATGGCATCGA+TGG - chr4_4:77287318-77287337 Msa0704790:intron 45.0%
CTTTGCCATCGATGCCATTA+AGG + chr4_4:77287326-77287345 None:intergenic 45.0%
!! AATGGCATCGATGGCAAAGA+AGG - chr4_4:77287327-77287346 Msa0704790:intron 45.0%
CTTTCCGTTTCTCAAAGGGA+AGG - chr4_4:77287547-77287566 Msa0704790:five_prime_UTR 45.0%
! GAGTCCTTCCCTTTGAGAAA+CGG + chr4_4:77287554-77287573 None:intergenic 45.0%
!! CTCGATGATGGGGAACATGA+AGG - chr4_4:77284273-77284292 Msa0704790:intron 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG - chr4_4:77284933-77284952 Msa0704790:intron 50.0%
GGATTCTTGGGTATTCTGGC+TGG - chr4_4:77285261-77285280 Msa0704790:CDS 50.0%
AGTGCAAGGGATACATACCC+CGG + chr4_4:77285295-77285314 None:intergenic 50.0%
CTACAAGCCTACCAGCCAAA+TGG + chr4_4:77285636-77285655 None:intergenic 50.0%
TGAGCCCGTCAACTTCAAAG+AGG + chr4_4:77285862-77285881 None:intergenic 50.0%
GTATAGGCAGCACATCTCCT+GGG - chr4_4:77286175-77286194 Msa0704790:intron 50.0%
TGCAGCAGAGGAAGAAGCTC+TGG + chr4_4:77284155-77284174 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG + chr4_4:77284178-77284197 None:intergenic 55.0%
GTGCAAGGGATACATACCCC+GGG + chr4_4:77285294-77285313 None:intergenic 55.0%
GGTATAGGCAGCACATCTCC+TGG - chr4_4:77286174-77286193 Msa0704790:intron 55.0%
GCAACCTGCACCCTCCAATG+AGG - chr4_4:77283968-77283987 Msa0704790:three_prime_UTR 60.0%
! CCAACCTCATTGGAGGGTGC+AGG + chr4_4:77283975-77283994 None:intergenic 60.0%
CCTGCACCCTCCAATGAGGT+TGG - chr4_4:77283972-77283991 Msa0704790:three_prime_UTR 60.0%
GCTTCTTCCTCTGCTGCACC+TGG - chr4_4:77284157-77284176 Msa0704790:exon 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG - chr4_4:77285273-77285292 Msa0704790:intron 60.0%
GGATACATACCCCGGGAAGC+TGG + chr4_4:77285287-77285306 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG - chr4_4:77285622-77285641 Msa0704790:intron 60.0%
TGGCAGGCCATTTGGCTGGT+AGG - chr4_4:77285626-77285645 Msa0704790:intron 60.0%
!! ATGGCTGGACTGGCAGCAGA+AGG - chr4_4:77286906-77286925 Msa0704790:intron 60.0%
GTCGACACCAGGTGCAGCAG+AGG + chr4_4:77284167-77284186 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG - chr4_4:77285274-77285293 Msa0704790:intron 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG - chr4_4:77285275-77285294 Msa0704790:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77283930 77287633 77283930 ID=Msa0704790;Name=Msa0704790
chr4_4 mRNA 77283930 77287633 77283930 ID=Msa0704790-mRNA-1;Parent=Msa0704790;Name=Msa0704790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=107|1|1|1|1|1|10|240|330
chr4_4 exon 77283930 77284289 77283930 ID=Msa0704790-mRNA-1:exon:24424;Parent=Msa0704790-mRNA-1
chr4_4 exon 77284417 77284482 77284417 ID=Msa0704790-mRNA-1:exon:24423;Parent=Msa0704790-mRNA-1
chr4_4 exon 77284583 77284673 77284583 ID=Msa0704790-mRNA-1:exon:24422;Parent=Msa0704790-mRNA-1
chr4_4 exon 77284941 77285070 77284941 ID=Msa0704790-mRNA-1:exon:24421;Parent=Msa0704790-mRNA-1
chr4_4 exon 77285193 77285281 77285193 ID=Msa0704790-mRNA-1:exon:24420;Parent=Msa0704790-mRNA-1
chr4_4 exon 77285367 77285443 77285367 ID=Msa0704790-mRNA-1:exon:24419;Parent=Msa0704790-mRNA-1
chr4_4 exon 77286267 77286335 77286267 ID=Msa0704790-mRNA-1:exon:24418;Parent=Msa0704790-mRNA-1
chr4_4 exon 77286459 77286533 77286459 ID=Msa0704790-mRNA-1:exon:24417;Parent=Msa0704790-mRNA-1
chr4_4 exon 77287008 77287103 77287008 ID=Msa0704790-mRNA-1:exon:24416;Parent=Msa0704790-mRNA-1
chr4_4 exon 77287347 77287633 77287347 ID=Msa0704790-mRNA-1:exon:24415;Parent=Msa0704790-mRNA-1
chr4_4 five_prime_UTR 77287527 77287633 77287527 ID=Msa0704790-mRNA-1:five_prime_utr;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77287347 77287526 77287347 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77287008 77287103 77287008 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77286459 77286533 77286459 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77286267 77286335 77286267 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77285367 77285443 77285367 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77285193 77285281 77285193 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77284941 77285070 77284941 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77284583 77284673 77284583 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77284417 77284482 77284417 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 CDS 77284170 77284289 77284170 ID=Msa0704790-mRNA-1:cds;Parent=Msa0704790-mRNA-1
chr4_4 three_prime_UTR 77283930 77284169 77283930 ID=Msa0704790-mRNA-1:three_prime_utr;Parent=Msa0704790-mRNA-1
Gene Sequence

>Msa0704790

ATGTTGATCACAACCATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGACATCACTTCGAGAGCTGACAACTTTAGGGATTAAAAATGCGGAGAACCTTGCAATTCCTAGTGTCAGAAATGATGCAGCTTTTCTCTTTACTGTGGTTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGGCTTCTCCAAGCAGCTATTAGCAGCTTTTCAGTTGTTTTTCCTGATTATCAAGAAAGGATTGCTAGACATGAAGCAGCCCACTTTTTGATTGCTTATCTGCTTGGCTTACCCATTTTGGGATATTCACTGGATATTGGAAAAGAGCATGTCAATCTCATTGATGATAGGCTTGAAAAGCTTCTCTATAGTGGTCAGCTTGATGCTAAGGAGATAGATAGATTGGCTGTTGTATCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTTGTTGGTCAATCTGCTGATCTTTTCACTCTCCAGAGGTTTATAAACAGAACCAAACCACAACTCAGCAAAGATCAGCAACAAAATCTCACTAGATGGGCAGTTTTGTTCGCTGCTTCTCTATTGAAAAACAACAAGTCGATCCATGAAGCCTTAATGGCATCGATGGCAAAGAAGGCAAGTGTACTCGAGTGCATTCAAACAATCGAAAGTGCATCATAG

Protein sequence

>Msa0704790

MLITTMPYSSSLPKPYYNFYHNHHHHQTCFNINLPKFTTRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGLLQAAISSFSVVFPDYQERIARHEAAHFLIAYLLGLPILGYSLDIGKEHVNLIDDRLEKLLYSGQLDAKEIDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKSIHEALMASMAKKASVLECIQTIESAS*