AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038230 MtrunA17_Chr7g0274271 90.495 505 16 4 1 499 43 521 0.0 873
Msa1038230 MtrunA17_Chr1g0207371 90.667 75 7 0 299 373 1 75 3.84e-41 142
Msa1038230 MtrunA17_Chr2g0312531 24.691 405 235 15 77 454 56 417 3.77e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038230 AT3G04650.1 64.000 475 137 5 25 497 43 485 0.0 597
Msa1038230 AT1G56000.1 25.945 397 226 16 77 447 23 377 4.37e-31 124
Msa1038230 AT1G55980.2 26.708 322 196 14 77 374 23 328 2.96e-25 106
Msa1038230 AT1G55980.1 26.708 322 196 14 77 374 163 468 1.41e-24 107
Msa1038230 AT1G56000.2 23.677 359 209 14 113 447 5 322 5.26e-21 94.4
Msa1038230 AT1G55980.3 23.944 284 179 12 113 374 5 273 3.98e-15 76.3

Find 173 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAATTTCTTGGTATTAT+TGG 0.139815 7_1:-75061950 None:intergenic
TTCATTTGTTTAGCAATTAA+TGG 0.158218 7_1:-75061672 None:intergenic
CAATAATACCAAGAAATTTC+TGG 0.214602 7_1:+75061951 Msa1038230:CDS
GTTCCTCAAACGCTGCTAAA+AGG 0.214975 7_1:-75061849 None:intergenic
AGTAAATTGGAGCCATTTAA+TGG 0.238781 7_1:+75061398 Msa1038230:CDS
TTTCTAAGTACTGCTGCTTA+TGG 0.240911 7_1:+75062006 Msa1038230:CDS
AGTTGGAGCTTCGTATAAAA+AGG 0.246702 7_1:-75062422 None:intergenic
AAGGGTTATTGATGATTCTT+TGG 0.277671 7_1:+75060724 Msa1038230:CDS
ATTGGACAATTCCCAGGTTT+GGG 0.284130 7_1:+75063172 Msa1038230:CDS
ATGTGGCACTTGAGTGAAAA+TGG 0.291266 7_1:+75061422 Msa1038230:CDS
TTTATACGAAGCTCCAACTA+TGG 0.297002 7_1:+75062426 Msa1038230:CDS
TGTTAATGTTTGGTTGGATA+AGG 0.312436 7_1:+75060802 Msa1038230:CDS
CCTTGCATCTTTGATCCCTT+TGG 0.312753 7_1:+75062797 Msa1038230:CDS
AAGTGCCACATCCCATTAAA+TGG 0.331387 7_1:-75061410 None:intergenic
AGAGGATCTTCTGCGGGGTT+TGG 0.337197 7_1:-75060495 None:intergenic
CTGGGAAGCCAGAAATTTCT+TGG 0.339013 7_1:-75061959 None:intergenic
GGCTGGAATTGAGTTCAATA+TGG 0.346393 7_1:+75061824 Msa1038230:CDS
TTTGATCCCTTTGGAAGGGC+TGG 0.351182 7_1:+75062806 Msa1038230:CDS
CCACTGGAAGGGCATGATAT+TGG 0.357198 7_1:+75063154 Msa1038230:CDS
TATTGGACAATTCCCAGGTT+TGG 0.357408 7_1:+75063171 Msa1038230:CDS
TGTAGCTGTTGAGGGGTATA+AGG 0.358356 7_1:-75063393 None:intergenic
CACCGTGGCGACGGCGGTTG+AGG 0.367448 7_1:-75060450 None:intergenic
GACACTGGTATTCATGGTCT+TGG 0.368585 7_1:+75060686 Msa1038230:CDS
CTTCTGCGGGGTTTGGAGGG+TGG 0.372413 7_1:-75060488 None:intergenic
GGATCTTCTGCGGGGTTTGG+AGG 0.374362 7_1:-75060492 None:intergenic
TCATGGTCTTGGAGGAAGAT+TGG 0.376531 7_1:+75060697 Msa1038230:CDS
ACTTTGACTCTTACCATAGT+TGG 0.379168 7_1:-75062439 None:intergenic
GTTAATGTTTGGTTGGATAA+GGG 0.379633 7_1:+75060803 Msa1038230:CDS
TGTTTGGTTGGATAAGGGTT+TGG 0.386223 7_1:+75060808 Msa1038230:CDS
GATGGACGGTTGATTAAGTA+TGG 0.387494 7_1:-75060425 None:intergenic
ACTTGGCAAGTTCATATACT+TGG 0.387565 7_1:-75063219 None:intergenic
ACCGTGCTGGATCAGTAAAT+TGG 0.400349 7_1:+75061385 Msa1038230:CDS
AGTGACTTGCTCTTGTTTGA+AGG 0.409804 7_1:-75060552 None:intergenic
TATGAGCACCATAGCCTACT+TGG 0.417255 7_1:-75063236 None:intergenic
CAGGGTCAGTTCCGAGACTT+TGG 0.419022 7_1:-75063096 None:intergenic
CATAAACCATAAAACATGTT+TGG 0.419107 7_1:+75060362 Msa1038230:exon
GTAAATTGGAGCCATTTAAT+GGG 0.420332 7_1:+75061399 Msa1038230:CDS
AACCGCTTGCTTATGACATC+GGG 0.420523 7_1:+75061645 Msa1038230:CDS
CATGGTCTTGGAGGAAGATT+GGG 0.422905 7_1:+75060698 Msa1038230:CDS
CAACCTAACCTCAGAGAGTA+AGG 0.424200 7_1:-75060945 None:intergenic
TTGCTGAAATTGTTAATGTT+TGG 0.427289 7_1:+75060792 Msa1038230:CDS
ATATGAAATGAATCTTCTAT+TGG 0.428808 7_1:-75063277 None:intergenic
GTCATTACATGTAGCTGTTG+AGG 0.431807 7_1:-75063402 None:intergenic
CTGCGGGGTTTGGAGGGTGG+TGG 0.443567 7_1:-75060485 None:intergenic
CCACGAGTAGCTATATATCT+TGG 0.446647 7_1:-75060902 None:intergenic
AACTCTCCGTTGGGAGGGAA+GGG 0.446815 7_1:+75063369 Msa1038230:three_prime_UTR
TTTACGAGAAGTTCCGTAAG+AGG 0.449507 7_1:-75060513 None:intergenic
GACCGGTGACGTTACTTTCA+GGG 0.453003 7_1:-75063319 None:intergenic
TCATTACATGTAGCTGTTGA+GGG 0.461014 7_1:-75063401 None:intergenic
ATATGTGGTGATTGGCTGCT+AGG 0.461805 7_1:+75062830 Msa1038230:CDS
TTCCTCAAACGCTGCTAAAA+GGG 0.463192 7_1:-75061848 None:intergenic
AAACTCTCCGTTGGGAGGGA+AGG 0.463332 7_1:+75063368 Msa1038230:three_prime_UTR
CATCTTTGATCCCTTTGGAA+GGG 0.464319 7_1:+75062802 Msa1038230:CDS
GAACCACTTGTCGGCATCAT+CGG 0.467385 7_1:+75060596 Msa1038230:CDS
CTCACAAAAGCTCCTTCAAA+AGG 0.471085 7_1:-75061901 None:intergenic
GCATCTTTGATCCCTTTGGA+AGG 0.471178 7_1:+75062801 Msa1038230:CDS
TTGATCCCTTTGGAAGGGCT+GGG 0.471633 7_1:+75062807 Msa1038230:CDS
GCGACGGCGGTTGAGGAAGA+TGG 0.473878 7_1:-75060443 None:intergenic
GTAAAGGAAGGCATGCTAGA+AGG 0.474473 7_1:+75062356 Msa1038230:CDS
ATAAGGGTTTGGTTCGAGAA+TGG 0.479869 7_1:+75060819 Msa1038230:CDS
AGTATATGAACTTGCCAAGT+AGG 0.479981 7_1:+75063222 Msa1038230:CDS
TCCGTAAGAGGATCTTCTGC+GGG 0.484423 7_1:-75060501 None:intergenic
ATCATCGGCGGTGGTATCTC+CGG 0.491348 7_1:+75060611 Msa1038230:CDS
ACTTCTGTATTCTCTAGAAA+AGG 0.493880 7_1:-75061877 None:intergenic
CATGATATTGGACAATTCCC+AGG 0.495655 7_1:+75063166 Msa1038230:CDS
TTTGGAAGGGCTGGGATATG+TGG 0.496617 7_1:+75062815 Msa1038230:CDS
ATTAATTGCTAAACAAATGA+AGG 0.496646 7_1:+75061674 Msa1038230:CDS
AAACCAACAGCAAACTCTCC+AGG 0.498698 7_1:-75063115 None:intergenic
GGGTTTGGTTCGAGAATGGA+AGG 0.500510 7_1:+75060823 Msa1038230:CDS
ACAAGTGGTTCGTCGGAGAA+AGG 0.501845 7_1:-75060584 None:intergenic
GGGCTGGGATATGTGGTGAT+TGG 0.502331 7_1:+75062822 Msa1038230:CDS
AGAGCGACGGTCCTCACTGT+TGG 0.503485 7_1:+75061980 Msa1038230:CDS
TTCCTCAACCGCCGTCGCCA+CGG 0.504679 7_1:+75060448 Msa1038230:CDS
TTGGAGGAAGATTGGGAACA+AGG 0.505429 7_1:+75060705 Msa1038230:CDS
GGAACTCCAGGTGTGTTAGT+TGG 0.508557 7_1:-75062776 None:intergenic
GATCTTCTGCGGGGTTTGGA+GGG 0.512856 7_1:-75060491 None:intergenic
ACTCTCCGTTGGGAGGGAAG+GGG 0.513116 7_1:+75063370 Msa1038230:three_prime_UTR
TCAAAGATGCAAGGAACTCC+AGG 0.513356 7_1:-75062788 None:intergenic
TGCTGATTCCTTACTCTCTG+AGG 0.515444 7_1:+75060937 Msa1038230:CDS
CAAAGTCTCGGAACTGACCC+TGG 0.517585 7_1:+75063097 Msa1038230:CDS
GACCCTGGAGAGTTTGCTGT+TGG 0.521304 7_1:+75063112 Msa1038230:CDS
CTTGGCAAGTTCATATACTT+GGG 0.523177 7_1:-75063218 None:intergenic
TAACCGCTTGCTTATGACAT+CGG 0.524146 7_1:+75061644 Msa1038230:CDS
TTCTCCGACGAACCACTTGT+CGG 0.524522 7_1:+75060587 Msa1038230:CDS
TGGAGCCATTTAATGGGATG+TGG 0.526525 7_1:+75061405 Msa1038230:CDS
TGTTACAGCAACAAGGGTAA+AGG 0.528484 7_1:+75062340 Msa1038230:CDS
GCTGCTAGGTTCTAATATAG+AGG 0.529461 7_1:+75062844 Msa1038230:CDS
TGAAACTGAAACTCTCCGTT+GGG 0.533656 7_1:+75063360 Msa1038230:three_prime_UTR
ACTGGTATTCATGGTCTTGG+AGG 0.535741 7_1:+75060689 Msa1038230:CDS
ATAAGCAGCAGTACTTAGAA+AGG 0.536774 7_1:-75062004 None:intergenic
GGCTATGGTGCTCATAAAGC+AGG 0.539827 7_1:+75063243 Msa1038230:exon
CGAGTAGCTATATATCTTGG+AGG 0.540308 7_1:-75060899 None:intergenic
GAATCATGAGTTTCAACCAC+TGG 0.544214 7_1:+75063138 Msa1038230:CDS
ACAGTGAGGACCGTCGCTCT+GGG 0.546207 7_1:-75061977 None:intergenic
GCTGGAATTGAGTTCAATAT+GGG 0.547006 7_1:+75061825 Msa1038230:CDS
GATTAAGTATGGAGCTGTGG+AGG 0.547693 7_1:-75060414 None:intergenic
TGAAATTGTTAATGTTTGGT+TGG 0.553129 7_1:+75060796 Msa1038230:CDS
GAAGATAGCGCAAATGAGAC+CGG 0.553399 7_1:-75060630 None:intergenic
ATGAATACCAGTGTCGAAAA+CGG 0.555330 7_1:-75060678 None:intergenic
AGGGAAATTTCCATTGCGCA+TGG 0.560144 7_1:-75063300 None:intergenic
GCTATATATCTTGGAGGAGA+GGG 0.561504 7_1:-75060893 None:intergenic
TTGAAACTGAAACTCTCCGT+TGG 0.562346 7_1:+75063359 Msa1038230:three_prime_UTR
ACTGTCTCTTTCTTTCGAAG+AGG 0.565112 7_1:-75063444 None:intergenic
ACCCTTGTTGCTGTAACAGT+AGG 0.565468 7_1:-75062335 None:intergenic
AAGTAACGTCACCGGTCTCA+AGG 0.566027 7_1:+75063325 Msa1038230:three_prime_UTR
GAAGGTGTTGAGGCTGCCCT+CGG 0.566261 7_1:+75062374 Msa1038230:CDS
ACTGAAACTCTCCGTTGGGA+GGG 0.566485 7_1:+75063364 Msa1038230:three_prime_UTR
AACTGAAACTCTCCGTTGGG+AGG 0.568769 7_1:+75063363 Msa1038230:three_prime_UTR
CATATCCCAGCCCTTCCAAA+GGG 0.571328 7_1:-75062812 None:intergenic
ATAGAGGCAGCAGTCATAAG+TGG 0.573140 7_1:+75062860 Msa1038230:CDS
TTTCTTCTGACCCCAAACCT+GGG 0.573694 7_1:-75063183 None:intergenic
CCAATATCATGCCCTTCCAG+TGG 0.575651 7_1:-75063154 None:intergenic
CCGCCGATGATGCCGACAAG+TGG 0.575746 7_1:-75060599 None:intergenic
CGAGAATGGAAGGGTACTGT+AGG 0.576220 7_1:+75060833 Msa1038230:CDS
TGAACTTGCCAAGTAGGCTA+TGG 0.576629 7_1:+75063228 Msa1038230:exon
ACTGTAGGAGAGTTGAAGAA+TGG 0.576821 7_1:+75060848 Msa1038230:CDS
AGCTATATATCTTGGAGGAG+AGG 0.578667 7_1:-75060894 None:intergenic
CTTGTCGGCATCATCGGCGG+TGG 0.579771 7_1:+75060602 Msa1038230:CDS
GAGGAATTGATTCAGTGTCA+TGG 0.579924 7_1:+75061923 Msa1038230:CDS
TGTGGCACTTGAGTGAAAAT+GGG 0.582715 7_1:+75061423 Msa1038230:CDS
AGTAACGTCACCGGTCTCAA+GGG 0.583459 7_1:+75063326 Msa1038230:three_prime_UTR
GTTAAATCATCCCTTGAGAC+CGG 0.584690 7_1:-75063336 None:intergenic
GCAGACTATATCCAAAGTCT+CGG 0.585256 7_1:+75063085 Msa1038230:CDS
AGTTCTCGTGTAGACTAGCT+TGG 0.585699 7_1:+75061349 Msa1038230:intron
TTCCTACTGTTACAGCAACA+AGG 0.590217 7_1:+75062333 Msa1038230:CDS
CATGAGTTTCAACCACTGGA+AGG 0.591971 7_1:+75063142 Msa1038230:CDS
GTAGACTAGCTTGGTGAATG+TGG 0.592576 7_1:+75061358 Msa1038230:intron
TTCCCTGAAAGTAACGTCAC+CGG 0.594492 7_1:+75063317 Msa1038230:three_prime_UTR
GATGCCGACAAGTGGTTCGT+CGG 0.594689 7_1:-75060591 None:intergenic
AACCAACAGCAAACTCTCCA+GGG 0.596550 7_1:-75063114 None:intergenic
AATGAATCTTCTATTGGCAG+AGG 0.596861 7_1:-75063271 None:intergenic
ATTAAGTATGGAGCTGTGGA+GGG 0.598053 7_1:-75060413 None:intergenic
ATGAGTTTCAACCACTGGAA+GGG 0.600186 7_1:+75063143 Msa1038230:CDS
GCTCTTCCAACTAACACACC+TGG 0.600578 7_1:+75062770 Msa1038230:CDS
AGTGAAAATGGGAAACCTCG+TGG 0.603023 7_1:+75061434 Msa1038230:CDS
CATTACATGTAGCTGTTGAG+GGG 0.603722 7_1:-75063400 None:intergenic
CATTTCATATCCATGCGCAA+TGG 0.603764 7_1:+75063290 Msa1038230:three_prime_UTR
ACATATCCCAGCCCTTCCAA+AGG 0.604486 7_1:-75062813 None:intergenic
GTATTCTCTAGAAAAGGAAG+AGG 0.605613 7_1:-75061871 None:intergenic
AATTGATTCAGTGTCATGGA+TGG 0.607121 7_1:+75061927 Msa1038230:CDS
CCACTTGTCGGCATCATCGG+CGG 0.608760 7_1:+75060599 Msa1038230:CDS
CCCCGCAGAAGATCCTCTTA+CGG 0.611097 7_1:+75060500 Msa1038230:CDS
CCAAGATATATAGCTACTCG+TGG 0.614560 7_1:+75060902 Msa1038230:CDS
AAAACAGAACAAGGTTCCAC+AGG 0.618596 7_1:+75062029 Msa1038230:CDS
CCAAAGGGATCAAAGATGCA+AGG 0.620527 7_1:-75062797 None:intergenic
GCTGCCCTCGGATTATCGAA+AGG 0.624060 7_1:+75062386 Msa1038230:CDS
TGAATGTGGAGAGACCGTGC+TGG 0.629635 7_1:+75061372 Msa1038230:CDS
GTGAAAATGGGAAACCTCGT+GGG 0.634127 7_1:+75061435 Msa1038230:CDS
TAAGGCCCCTTCCCTCCCAA+CGG 0.634568 7_1:-75063375 None:intergenic
TCCTACTGTTACAGCAACAA+GGG 0.638142 7_1:+75062334 Msa1038230:CDS
TTTCTGGCTTCCCAGAGCGA+CGG 0.639546 7_1:+75061967 Msa1038230:CDS
TGCTTATGGAAAACAGAACA+AGG 0.641251 7_1:+75062020 Msa1038230:CDS
TGGAGGAAGATTGGGAACAA+GGG 0.641504 7_1:+75060706 Msa1038230:CDS
AGGCATGCTAGAAGGTGTTG+AGG 0.643411 7_1:+75062364 Msa1038230:CDS
GTTGATTAAGTATGGAGCTG+TGG 0.645418 7_1:-75060417 None:intergenic
GCAACCCTTTCGATAATCCG+AGG 0.646112 7_1:-75062391 None:intergenic
TTGGACAATTCCCAGGTTTG+GGG 0.647470 7_1:+75063173 Msa1038230:CDS
TTCCGTAAGAGGATCTTCTG+CGG 0.652133 7_1:-75060502 None:intergenic
AACCCGATGTCATAAGCAAG+CGG 0.656989 7_1:-75061647 None:intergenic
ACAGCAACAAGGGTAAAGGA+AGG 0.657319 7_1:+75062344 Msa1038230:CDS
GCAATTGTTGTTGCACACAA+TGG 0.658808 7_1:+75061467 Msa1038230:CDS
TCCAATTTACTGATCCAGCA+CGG 0.667315 7_1:-75061386 None:intergenic
CAACCCTTTCGATAATCCGA+GGG 0.671065 7_1:-75062390 None:intergenic
TTGGTCTGAATATGAAAACA+TGG 0.672279 7_1:+75060381 Msa1038230:CDS
GTAGGAGAGTTGAAGAATGG+TGG 0.676137 7_1:+75060851 Msa1038230:CDS
TGGTTCGTCGGAGAAAGGAG+CGG 0.684420 7_1:-75060579 None:intergenic
CGGCGGTTGAGGAAGATGGA+CGG 0.686159 7_1:-75060439 None:intergenic
CCGTAAGAGGATCTTCTGCG+GGG 0.688670 7_1:-75060500 None:intergenic
GGTTTGGTTCGAGAATGGAA+GGG 0.690767 7_1:+75060824 Msa1038230:CDS
GCTATCTTCTTAGACAAACG+CGG 0.704386 7_1:+75060644 Msa1038230:CDS
CTTAGAAAGGTCCAACAGTG+AGG 0.708141 7_1:-75061991 None:intergenic
AATACCAGTGTCGAAAACGG+TGG 0.722308 7_1:-75060675 None:intergenic
ATTGCATCAAACTTCCCACG+AGG 0.748470 7_1:-75061449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATATTAATGAAAGTTT+AGG + chr7_1:75061194-75061213 Msa1038230:intron 10.0%
!! TAAATATTAATGAAAGTTTA+GGG + chr7_1:75061195-75061214 Msa1038230:intron 10.0%
!!! AGTGACATTATTATATTTTT+GGG + chr7_1:75063464-75063483 Msa1038230:three_prime_UTR 15.0%
!!! CTTTAAAATTGTATTTGTAG+TGG - chr7_1:75061033-75061052 None:intergenic 20.0%
!!! CACTACAAATACAATTTTAA+AGG + chr7_1:75061031-75061050 Msa1038230:intron 20.0%
!!! ATTGGCATTGTTTAATTTAA+GGG + chr7_1:75061165-75061184 Msa1038230:intron 20.0%
!! TCTTAACACAAAAATAACAT+GGG - chr7_1:75061325-75061344 None:intergenic 20.0%
!! TTCTTAACACAAAAATAACA+TGG - chr7_1:75061326-75061345 None:intergenic 20.0%
!! TACTGAAAAATGTGTAAAAA+CGG - chr7_1:75061545-75061564 None:intergenic 20.0%
!!! TTTTTACACATTTTTCAGTA+TGG + chr7_1:75061545-75061564 Msa1038230:intron 20.0%
!! TTCATTTGTTTAGCAATTAA+TGG - chr7_1:75061675-75061694 None:intergenic 20.0%
!! ATTAATTGCTAAACAAATGA+AGG + chr7_1:75061674-75061693 Msa1038230:CDS 20.0%
!!! ATAAATTTTAATCAAATCCC+TGG - chr7_1:75062211-75062230 None:intergenic 20.0%
!! ACATTGTAAGTAAACTTAAA+AGG + chr7_1:75062710-75062729 Msa1038230:intron 20.0%
!! TAAACATGAATTACTACTAA+TGG - chr7_1:75062994-75063013 None:intergenic 20.0%
!! ATATGAAATGAATCTTCTAT+TGG - chr7_1:75063280-75063299 None:intergenic 20.0%
!!! CAGTGACATTATTATATTTT+TGG + chr7_1:75063463-75063482 Msa1038230:three_prime_UTR 20.0%
!! CAAACATGTTTTATGGTTTA+TGG - chr7_1:75060364-75060383 None:intergenic 25.0%
! CATAAACCATAAAACATGTT+TGG + chr7_1:75060362-75060381 Msa1038230:exon 25.0%
! TTGCTGAAATTGTTAATGTT+TGG + chr7_1:75060792-75060811 Msa1038230:CDS 25.0%
! TGAAATTGTTAATGTTTGGT+TGG + chr7_1:75060796-75060815 Msa1038230:CDS 25.0%
!!! AGAGACGTTTTTCAATTTAA+GGG - chr7_1:75060994-75061013 None:intergenic 25.0%
! CAATATGTATAACCTTTCAT+AGG + chr7_1:75061093-75061112 Msa1038230:intron 25.0%
!!! TAACCTTTCATAGGTTTTAA+TGG + chr7_1:75061102-75061121 Msa1038230:intron 25.0%
!!! AACCTTTCATAGGTTTTAAT+GGG + chr7_1:75061103-75061122 Msa1038230:intron 25.0%
!! TGCTTATTAGAGAGATATTT+TGG + chr7_1:75061126-75061145 Msa1038230:intron 25.0%
!!! TTATTAGAGAGATATTTTGG+TGG + chr7_1:75061129-75061148 Msa1038230:intron 25.0%
!! GATTGGCATTGTTTAATTTA+AGG + chr7_1:75061164-75061183 Msa1038230:intron 25.0%
! CAGAAATTTCTTGGTATTAT+TGG - chr7_1:75061953-75061972 None:intergenic 25.0%
! CAATAATACCAAGAAATTTC+TGG + chr7_1:75061951-75061970 Msa1038230:CDS 25.0%
! ATACACAAATGAAAATGCAT+AGG - chr7_1:75062248-75062267 None:intergenic 25.0%
!! TTTTCCTGATAAACAAAACA+TGG - chr7_1:75062311-75062330 None:intergenic 25.0%
!!! GTATTATTCTGAGATTTTCA+GGG + chr7_1:75062742-75062761 Msa1038230:intron 25.0%
!!! TATTATTCTGAGATTTTCAG+GGG + chr7_1:75062743-75062762 Msa1038230:intron 25.0%
! AACAAACCATGTAAATTAGA+AGG - chr7_1:75062925-75062944 None:intergenic 25.0%
!! CACAATTTTGAACAACAAAA+GGG - chr7_1:75063043-75063062 None:intergenic 25.0%
!! ACACAATTTTGAACAACAAA+AGG - chr7_1:75063044-75063063 None:intergenic 25.0%
!! TTGTTGTTCAAAATTGTGTT+TGG + chr7_1:75063045-75063064 Msa1038230:intron 25.0%
! TTCAGACCAAACATGTTTTA+TGG - chr7_1:75060371-75060390 None:intergenic 30.0%
TTGGTCTGAATATGAAAACA+TGG + chr7_1:75060381-75060400 Msa1038230:CDS 30.0%
! AAGGGTTATTGATGATTCTT+TGG + chr7_1:75060724-75060743 Msa1038230:CDS 30.0%
TGTTAATGTTTGGTTGGATA+AGG + chr7_1:75060802-75060821 Msa1038230:CDS 30.0%
GTTAATGTTTGGTTGGATAA+GGG + chr7_1:75060803-75060822 Msa1038230:CDS 30.0%
!! GGACTAGATTGTTGATAATA+AGG - chr7_1:75060973-75060992 None:intergenic 30.0%
!! GAGAGACGTTTTTCAATTTA+AGG - chr7_1:75060995-75061014 None:intergenic 30.0%
GAAAAACTTAACGATCATCT+TGG - chr7_1:75061253-75061272 None:intergenic 30.0%
! CTGCTATAGTTCTTAGATTT+TGG + chr7_1:75061284-75061303 Msa1038230:intron 30.0%
!!! TAGATTTTGGTTTTTTGCTG+TGG + chr7_1:75061297-75061316 Msa1038230:intron 30.0%
AGTAAATTGGAGCCATTTAA+TGG + chr7_1:75061398-75061417 Msa1038230:CDS 30.0%
GTAAATTGGAGCCATTTAAT+GGG + chr7_1:75061399-75061418 Msa1038230:CDS 30.0%
ATGTATAGTTATCCGACTTA+TGG + chr7_1:75061577-75061596 Msa1038230:intron 30.0%
TTACTAAAGAAGCCATAAGT+CGG - chr7_1:75061592-75061611 None:intergenic 30.0%
GTTTATCGAATCAAATGAAC+TGG - chr7_1:75061721-75061740 None:intergenic 30.0%
AGTAGAATAGAAACAATAGC+TGG - chr7_1:75061790-75061809 None:intergenic 30.0%
! ACTTCTGTATTCTCTAGAAA+AGG - chr7_1:75061880-75061899 None:intergenic 30.0%
! AATACAGAAGTTCCTTTTGA+AGG + chr7_1:75061889-75061908 Msa1038230:CDS 30.0%
GGTATAGAGGAGTAATATAT+TGG + chr7_1:75062148-75062167 Msa1038230:intron 30.0%
GGCAAATATTATTCTAGGTA+AGG - chr7_1:75062190-75062209 None:intergenic 30.0%
TACCTAGAATAATATTTGCC+AGG + chr7_1:75062190-75062209 Msa1038230:intron 30.0%
ACCTAGAATAATATTTGCCA+GGG + chr7_1:75062191-75062210 Msa1038230:intron 30.0%
AGCTTCGTATAAAAAGGTTT+CGG - chr7_1:75062419-75062438 None:intergenic 30.0%
TATGTTGTCAACAAATCAGA+CGG + chr7_1:75062642-75062661 Msa1038230:intron 30.0%
!!! CGTATTATTCTGAGATTTTC+AGG + chr7_1:75062741-75062760 Msa1038230:intron 30.0%
ATTGGACCTTCTAATTTACA+TGG + chr7_1:75062916-75062935 Msa1038230:intron 30.0%
! ATGAATACCAGTGTCGAAAA+CGG - chr7_1:75060681-75060700 None:intergenic 35.0%
TTGAAAAACGTCTCTCCATT+TGG + chr7_1:75060999-75061018 Msa1038230:intron 35.0%
! GTAGTGGAAAAATGACCAAA+TGG - chr7_1:75061017-75061036 None:intergenic 35.0%
CACCCATTAAAACCTATGAA+AGG - chr7_1:75061108-75061127 None:intergenic 35.0%
ACTCGACCTTTACAATTTGA+AGG + chr7_1:75061226-75061245 Msa1038230:intron 35.0%
CTTGGTCCTTCAAATTGTAA+AGG - chr7_1:75061235-75061254 None:intergenic 35.0%
TGTGTAAAAACGGAACTTGT+AGG - chr7_1:75061535-75061554 None:intergenic 35.0%
AAACAAATGAAGGTCAGTGT+AGG + chr7_1:75061684-75061703 Msa1038230:intron 35.0%
CGAATCAAATGAACTGGAAA+GGG - chr7_1:75061715-75061734 None:intergenic 35.0%
TCGAATCAAATGAACTGGAA+AGG - chr7_1:75061716-75061735 None:intergenic 35.0%
GCTGGAATTGAGTTCAATAT+GGG + chr7_1:75061825-75061844 Msa1038230:CDS 35.0%
! GTATTCTCTAGAAAAGGAAG+AGG - chr7_1:75061874-75061893 None:intergenic 35.0%
! AATTGATTCAGTGTCATGGA+TGG + chr7_1:75061927-75061946 Msa1038230:CDS 35.0%
ATAAGCAGCAGTACTTAGAA+AGG - chr7_1:75062007-75062026 None:intergenic 35.0%
! TTTCTAAGTACTGCTGCTTA+TGG + chr7_1:75062006-75062025 Msa1038230:CDS 35.0%
TGCTTATGGAAAACAGAACA+AGG + chr7_1:75062020-75062039 Msa1038230:CDS 35.0%
TAGTTTCCTGAGTGTTAGAT+TGG + chr7_1:75062098-75062117 Msa1038230:intron 35.0%
!!! CTGAGTGTTAGATTGGTTTT+GGG + chr7_1:75062105-75062124 Msa1038230:intron 35.0%
!!! TGAGTGTTAGATTGGTTTTG+GGG + chr7_1:75062106-75062125 Msa1038230:intron 35.0%
!! GATGTTTTTCGAAGGTATAG+AGG + chr7_1:75062135-75062154 Msa1038230:intron 35.0%
TCCCTGGCAAATATTATTCT+AGG - chr7_1:75062195-75062214 None:intergenic 35.0%
!!! TGAGCCATGTTTTGTTTATC+AGG + chr7_1:75062304-75062323 Msa1038230:intron 35.0%
AGTTGGAGCTTCGTATAAAA+AGG - chr7_1:75062425-75062444 None:intergenic 35.0%
TTTATACGAAGCTCCAACTA+TGG + chr7_1:75062426-75062445 Msa1038230:CDS 35.0%
ACTTTGACTCTTACCATAGT+TGG - chr7_1:75062442-75062461 None:intergenic 35.0%
AACCTGAACAAAAACATGTC+AGG - chr7_1:75062501-75062520 None:intergenic 35.0%
! ACTTACAATGTTTAGAGCTG+CGG - chr7_1:75062701-75062720 None:intergenic 35.0%
CCAATTGAAAGTGACATACA+TGG - chr7_1:75062901-75062920 None:intergenic 35.0%
!! CCATGTATGTCACTTTCAAT+TGG + chr7_1:75062898-75062917 Msa1038230:intron 35.0%
CTTGGCAAGTTCATATACTT+GGG - chr7_1:75063221-75063240 None:intergenic 35.0%
ACTTGGCAAGTTCATATACT+TGG - chr7_1:75063222-75063241 None:intergenic 35.0%
AGTATATGAACTTGCCAAGT+AGG + chr7_1:75063222-75063241 Msa1038230:CDS 35.0%
AATGAATCTTCTATTGGCAG+AGG - chr7_1:75063274-75063293 None:intergenic 35.0%
TCATTACATGTAGCTGTTGA+GGG - chr7_1:75063404-75063423 None:intergenic 35.0%
ATTAAGTATGGAGCTGTGGA+GGG - chr7_1:75060416-75060435 None:intergenic 40.0%
GTTGATTAAGTATGGAGCTG+TGG - chr7_1:75060420-75060439 None:intergenic 40.0%
GATGGACGGTTGATTAAGTA+TGG - chr7_1:75060428-75060447 None:intergenic 40.0%
! TGGTTTTTCCATTTTCACCG+TGG - chr7_1:75060468-75060487 None:intergenic 40.0%
TTTACGAGAAGTTCCGTAAG+AGG - chr7_1:75060516-75060535 None:intergenic 40.0%
!! AGTGACTTGCTCTTGTTTGA+AGG - chr7_1:75060555-75060574 None:intergenic 40.0%
GCTATCTTCTTAGACAAACG+CGG + chr7_1:75060644-75060663 Msa1038230:CDS 40.0%
! GTTTTCGACACTGGTATTCA+TGG + chr7_1:75060680-75060699 Msa1038230:CDS 40.0%
CAGTAAAAAACTGAGCAGCA+TGG - chr7_1:75060757-75060776 None:intergenic 40.0%
TGTTTGGTTGGATAAGGGTT+TGG + chr7_1:75060808-75060827 Msa1038230:CDS 40.0%
! ATAAGGGTTTGGTTCGAGAA+TGG + chr7_1:75060819-75060838 Msa1038230:CDS 40.0%
ACTGTAGGAGAGTTGAAGAA+TGG + chr7_1:75060848-75060867 Msa1038230:CDS 40.0%
GCTATATATCTTGGAGGAGA+GGG - chr7_1:75060896-75060915 None:intergenic 40.0%
AGCTATATATCTTGGAGGAG+AGG - chr7_1:75060897-75060916 None:intergenic 40.0%
CGAGTAGCTATATATCTTGG+AGG - chr7_1:75060902-75060921 None:intergenic 40.0%
CCACGAGTAGCTATATATCT+TGG - chr7_1:75060905-75060924 None:intergenic 40.0%
CCAAGATATATAGCTACTCG+TGG + chr7_1:75060902-75060921 Msa1038230:CDS 40.0%
!! ATTCCTTACTCTCTGAGGTT+AGG + chr7_1:75060942-75060961 Msa1038230:intron 40.0%
GGTGGAGAGACTAAATTGAT+TGG + chr7_1:75061147-75061166 Msa1038230:intron 40.0%
TCCAATTTACTGATCCAGCA+CGG - chr7_1:75061389-75061408 None:intergenic 40.0%
AAGTGCCACATCCCATTAAA+TGG - chr7_1:75061413-75061432 None:intergenic 40.0%
ATGTGGCACTTGAGTGAAAA+TGG + chr7_1:75061422-75061441 Msa1038230:CDS 40.0%
TGTGGCACTTGAGTGAAAAT+GGG + chr7_1:75061423-75061442 Msa1038230:CDS 40.0%
! GCAATTGTTGTTGCACACAA+TGG + chr7_1:75061467-75061486 Msa1038230:CDS 40.0%
! CTATTTCTCTATTTGCCGAC+AGG + chr7_1:75061612-75061631 Msa1038230:intron 40.0%
TAACCGCTTGCTTATGACAT+CGG + chr7_1:75061644-75061663 Msa1038230:CDS 40.0%
TTCTACTGTCCATTGTTCAG+AGG + chr7_1:75061803-75061822 Msa1038230:intron 40.0%
GGCTGGAATTGAGTTCAATA+TGG + chr7_1:75061824-75061843 Msa1038230:CDS 40.0%
TTCCTCAAACGCTGCTAAAA+GGG - chr7_1:75061851-75061870 None:intergenic 40.0%
CTCACAAAAGCTCCTTCAAA+AGG - chr7_1:75061904-75061923 None:intergenic 40.0%
! TTTGAAGGAGCTTTTGTGAG+AGG + chr7_1:75061904-75061923 Msa1038230:CDS 40.0%
! GAGGAATTGATTCAGTGTCA+TGG + chr7_1:75061923-75061942 Msa1038230:CDS 40.0%
AAAACAGAACAAGGTTCCAC+AGG + chr7_1:75062029-75062048 Msa1038230:CDS 40.0%
AAAATTTCACCACCTACCTG+TGG - chr7_1:75062048-75062067 None:intergenic 40.0%
CCAAAACCAATCTAACACTC+AGG - chr7_1:75062107-75062126 None:intergenic 40.0%
!!! CCTGAGTGTTAGATTGGTTT+TGG + chr7_1:75062104-75062123 Msa1038230:intron 40.0%
TTCCTACTGTTACAGCAACA+AGG + chr7_1:75062333-75062352 Msa1038230:CDS 40.0%
TCCTACTGTTACAGCAACAA+GGG + chr7_1:75062334-75062353 Msa1038230:CDS 40.0%
TGTTACAGCAACAAGGGTAA+AGG + chr7_1:75062340-75062359 Msa1038230:CDS 40.0%
CTGAACAAAAACATGTCAGG+AGG - chr7_1:75062498-75062517 None:intergenic 40.0%
!! CTCCTGACATGTTTTTGTTC+AGG + chr7_1:75062496-75062515 Msa1038230:intron 40.0%
! CATCTTTGATCCCTTTGGAA+GGG + chr7_1:75062802-75062821 Msa1038230:CDS 40.0%
! GCTGCTAGGTTCTAATATAG+AGG + chr7_1:75062844-75062863 Msa1038230:CDS 40.0%
GCAGACTATATCCAAAGTCT+CGG + chr7_1:75063085-75063104 Msa1038230:CDS 40.0%
GAATCATGAGTTTCAACCAC+TGG + chr7_1:75063138-75063157 Msa1038230:CDS 40.0%
ATGAGTTTCAACCACTGGAA+GGG + chr7_1:75063143-75063162 Msa1038230:CDS 40.0%
CATGATATTGGACAATTCCC+AGG + chr7_1:75063166-75063185 Msa1038230:CDS 40.0%
TATTGGACAATTCCCAGGTT+TGG + chr7_1:75063171-75063190 Msa1038230:CDS 40.0%
ATTGGACAATTCCCAGGTTT+GGG + chr7_1:75063172-75063191 Msa1038230:CDS 40.0%
CATTTCATATCCATGCGCAA+TGG + chr7_1:75063290-75063309 Msa1038230:three_prime_UTR 40.0%
GTTAAATCATCCCTTGAGAC+CGG - chr7_1:75063339-75063358 None:intergenic 40.0%
TTGAAACTGAAACTCTCCGT+TGG + chr7_1:75063359-75063378 Msa1038230:three_prime_UTR 40.0%
TGAAACTGAAACTCTCCGTT+GGG + chr7_1:75063360-75063379 Msa1038230:three_prime_UTR 40.0%
CATTACATGTAGCTGTTGAG+GGG - chr7_1:75063403-75063422 None:intergenic 40.0%
GTCATTACATGTAGCTGTTG+AGG - chr7_1:75063405-75063424 None:intergenic 40.0%
ACTGTCTCTTTCTTTCGAAG+AGG - chr7_1:75063447-75063466 None:intergenic 40.0%
GATTAAGTATGGAGCTGTGG+AGG - chr7_1:75060417-75060436 None:intergenic 45.0%
TTCCGTAAGAGGATCTTCTG+CGG - chr7_1:75060505-75060524 None:intergenic 45.0%
GAAGATAGCGCAAATGAGAC+CGG - chr7_1:75060633-75060652 None:intergenic 45.0%
! AATACCAGTGTCGAAAACGG+TGG - chr7_1:75060678-75060697 None:intergenic 45.0%
GACACTGGTATTCATGGTCT+TGG + chr7_1:75060686-75060705 Msa1038230:CDS 45.0%
! ACTGGTATTCATGGTCTTGG+AGG + chr7_1:75060689-75060708 Msa1038230:CDS 45.0%
! TCATGGTCTTGGAGGAAGAT+TGG + chr7_1:75060697-75060716 Msa1038230:CDS 45.0%
! CATGGTCTTGGAGGAAGATT+GGG + chr7_1:75060698-75060717 Msa1038230:CDS 45.0%
TTGGAGGAAGATTGGGAACA+AGG + chr7_1:75060705-75060724 Msa1038230:CDS 45.0%
TGGAGGAAGATTGGGAACAA+GGG + chr7_1:75060706-75060725 Msa1038230:CDS 45.0%
! GGTTTGGTTCGAGAATGGAA+GGG + chr7_1:75060824-75060843 Msa1038230:CDS 45.0%
GTAGGAGAGTTGAAGAATGG+TGG + chr7_1:75060851-75060870 Msa1038230:CDS 45.0%
CTTGGAGGAGAGGGTAAAAA+TGG - chr7_1:75060887-75060906 None:intergenic 45.0%
!! TGCTGATTCCTTACTCTCTG+AGG + chr7_1:75060937-75060956 Msa1038230:CDS 45.0%
CAACCTAACCTCAGAGAGTA+AGG - chr7_1:75060948-75060967 None:intergenic 45.0%
! AGTTCTCGTGTAGACTAGCT+TGG + chr7_1:75061349-75061368 Msa1038230:intron 45.0%
!! GTAGACTAGCTTGGTGAATG+TGG + chr7_1:75061358-75061377 Msa1038230:intron 45.0%
ACCGTGCTGGATCAGTAAAT+TGG + chr7_1:75061385-75061404 Msa1038230:CDS 45.0%
TGGAGCCATTTAATGGGATG+TGG + chr7_1:75061405-75061424 Msa1038230:CDS 45.0%
AGTGAAAATGGGAAACCTCG+TGG + chr7_1:75061434-75061453 Msa1038230:CDS 45.0%
GTGAAAATGGGAAACCTCGT+GGG + chr7_1:75061435-75061454 Msa1038230:CDS 45.0%
ATTGCATCAAACTTCCCACG+AGG - chr7_1:75061452-75061471 None:intergenic 45.0%
! CGGTTAGCACATTTTCCTGT+CGG - chr7_1:75061630-75061649 None:intergenic 45.0%
AACCGCTTGCTTATGACATC+GGG + chr7_1:75061645-75061664 Msa1038230:CDS 45.0%
AACCCGATGTCATAAGCAAG+CGG - chr7_1:75061650-75061669 None:intergenic 45.0%
CAATTCCAGCCTCTGAACAA+TGG - chr7_1:75061815-75061834 None:intergenic 45.0%
GTTCCTCAAACGCTGCTAAA+AGG - chr7_1:75061852-75061871 None:intergenic 45.0%
CTGGGAAGCCAGAAATTTCT+TGG - chr7_1:75061962-75061981 None:intergenic 45.0%
CTTAGAAAGGTCCAACAGTG+AGG - chr7_1:75061994-75062013 None:intergenic 45.0%
!!! TAGATTGGTTTTGGGGTTGC+TGG + chr7_1:75062113-75062132 Msa1038230:intron 45.0%
!! GGTTGCTGGATGTTTTTCGA+AGG + chr7_1:75062127-75062146 Msa1038230:intron 45.0%
ACCCTTGTTGCTGTAACAGT+AGG - chr7_1:75062338-75062357 None:intergenic 45.0%
ACAGCAACAAGGGTAAAGGA+AGG + chr7_1:75062344-75062363 Msa1038230:CDS 45.0%
! GTAAAGGAAGGCATGCTAGA+AGG + chr7_1:75062356-75062375 Msa1038230:CDS 45.0%
CAACCCTTTCGATAATCCGA+GGG - chr7_1:75062393-75062412 None:intergenic 45.0%
TCAAAGATGCAAGGAACTCC+AGG - chr7_1:75062791-75062810 None:intergenic 45.0%
CCAAAGGGATCAAAGATGCA+AGG - chr7_1:75062800-75062819 None:intergenic 45.0%
CCTTGCATCTTTGATCCCTT+TGG + chr7_1:75062797-75062816 Msa1038230:CDS 45.0%
GCATCTTTGATCCCTTTGGA+AGG + chr7_1:75062801-75062820 Msa1038230:CDS 45.0%
! ATATGTGGTGATTGGCTGCT+AGG + chr7_1:75062830-75062849 Msa1038230:CDS 45.0%
ATAGAGGCAGCAGTCATAAG+TGG + chr7_1:75062860-75062879 Msa1038230:CDS 45.0%
AACCAACAGCAAACTCTCCA+GGG - chr7_1:75063117-75063136 None:intergenic 45.0%
AAACCAACAGCAAACTCTCC+AGG - chr7_1:75063118-75063137 None:intergenic 45.0%
CATGAGTTTCAACCACTGGA+AGG + chr7_1:75063142-75063161 Msa1038230:CDS 45.0%
TTGGACAATTCCCAGGTTTG+GGG + chr7_1:75063173-75063192 Msa1038230:CDS 45.0%
TTTCTTCTGACCCCAAACCT+GGG - chr7_1:75063186-75063205 None:intergenic 45.0%
! TTTTCTTCTGACCCCAAACC+TGG - chr7_1:75063187-75063206 None:intergenic 45.0%
TGAACTTGCCAAGTAGGCTA+TGG + chr7_1:75063228-75063247 Msa1038230:exon 45.0%
TATGAGCACCATAGCCTACT+TGG - chr7_1:75063239-75063258 None:intergenic 45.0%
AGGGAAATTTCCATTGCGCA+TGG - chr7_1:75063303-75063322 None:intergenic 45.0%
TTCCCTGAAAGTAACGTCAC+CGG + chr7_1:75063317-75063336 Msa1038230:three_prime_UTR 45.0%
! TGTAGCTGTTGAGGGGTATA+AGG - chr7_1:75063396-75063415 None:intergenic 45.0%
!! TTAAAAAAAAAAAAAAATTG+CGG - chr7_1:75062950-75062969 None:intergenic 5.0%
!!! TTTTTTTTTAATTTAGTAAT+TGG + chr7_1:75062959-75062978 Msa1038230:intron 5.0%
! TTCCATTTTCACCGTGGCGA+CGG - chr7_1:75060462-75060481 None:intergenic 50.0%
TCCGTAAGAGGATCTTCTGC+GGG - chr7_1:75060504-75060523 None:intergenic 50.0%
ACAAGTGGTTCGTCGGAGAA+AGG - chr7_1:75060587-75060606 None:intergenic 50.0%
TTCTCCGACGAACCACTTGT+CGG + chr7_1:75060587-75060606 Msa1038230:CDS 50.0%
GAACCACTTGTCGGCATCAT+CGG + chr7_1:75060596-75060615 Msa1038230:CDS 50.0%
! GGGTTTGGTTCGAGAATGGA+AGG + chr7_1:75060823-75060842 Msa1038230:CDS 50.0%
!! CGAGAATGGAAGGGTACTGT+AGG + chr7_1:75060833-75060852 Msa1038230:CDS 50.0%
ACTGTCCATTGTTCAGAGGC+TGG + chr7_1:75061807-75061826 Msa1038230:intron 50.0%
CAGAACAAGGTTCCACAGGT+AGG + chr7_1:75062033-75062052 Msa1038230:intron 50.0%
AACAAGGTTCCACAGGTAGG+TGG + chr7_1:75062036-75062055 Msa1038230:intron 50.0%
!! AGGCATGCTAGAAGGTGTTG+AGG + chr7_1:75062364-75062383 Msa1038230:CDS 50.0%
CTGCCCTCGGATTATCGAAA+GGG + chr7_1:75062387-75062406 Msa1038230:CDS 50.0%
GCAACCCTTTCGATAATCCG+AGG - chr7_1:75062394-75062413 None:intergenic 50.0%
GCTCTTCCAACTAACACACC+TGG + chr7_1:75062770-75062789 Msa1038230:CDS 50.0%
GGAACTCCAGGTGTGTTAGT+TGG - chr7_1:75062779-75062798 None:intergenic 50.0%
! TTTGATCCCTTTGGAAGGGC+TGG + chr7_1:75062806-75062825 Msa1038230:CDS 50.0%
! TTGATCCCTTTGGAAGGGCT+GGG + chr7_1:75062807-75062826 Msa1038230:CDS 50.0%
CATATCCCAGCCCTTCCAAA+GGG - chr7_1:75062815-75062834 None:intergenic 50.0%
ACATATCCCAGCCCTTCCAA+AGG - chr7_1:75062816-75062835 None:intergenic 50.0%
TTTGGAAGGGCTGGGATATG+TGG + chr7_1:75062815-75062834 Msa1038230:CDS 50.0%
CCAATATCATGCCCTTCCAG+TGG - chr7_1:75063157-75063176 None:intergenic 50.0%
! CCACTGGAAGGGCATGATAT+TGG + chr7_1:75063154-75063173 Msa1038230:CDS 50.0%
GGCTATGGTGCTCATAAAGC+AGG + chr7_1:75063243-75063262 Msa1038230:exon 50.0%
! GACCGGTGACGTTACTTTCA+GGG - chr7_1:75063322-75063341 None:intergenic 50.0%
! AGACCGGTGACGTTACTTTC+AGG - chr7_1:75063323-75063342 None:intergenic 50.0%
AAGTAACGTCACCGGTCTCA+AGG + chr7_1:75063325-75063344 Msa1038230:three_prime_UTR 50.0%
AGTAACGTCACCGGTCTCAA+GGG + chr7_1:75063326-75063345 Msa1038230:three_prime_UTR 50.0%
AACTGAAACTCTCCGTTGGG+AGG + chr7_1:75063363-75063382 Msa1038230:three_prime_UTR 50.0%
ACTGAAACTCTCCGTTGGGA+GGG + chr7_1:75063364-75063383 Msa1038230:three_prime_UTR 50.0%
GATCTTCTGCGGGGTTTGGA+GGG - chr7_1:75060494-75060513 None:intergenic 55.0%
AGAGGATCTTCTGCGGGGTT+TGG - chr7_1:75060498-75060517 None:intergenic 55.0%
CCGTAAGAGGATCTTCTGCG+GGG - chr7_1:75060503-75060522 None:intergenic 55.0%
CCCCGCAGAAGATCCTCTTA+CGG + chr7_1:75060500-75060519 Msa1038230:CDS 55.0%
TGGTTCGTCGGAGAAAGGAG+CGG - chr7_1:75060582-75060601 None:intergenic 55.0%
GATGCCGACAAGTGGTTCGT+CGG - chr7_1:75060594-75060613 None:intergenic 55.0%
ATCATCGGCGGTGGTATCTC+CGG + chr7_1:75060611-75060630 Msa1038230:CDS 55.0%
TGAATGTGGAGAGACCGTGC+TGG + chr7_1:75061372-75061391 Msa1038230:CDS 55.0%
! GGCCCTTTTAGCAGCGTTTG+AGG + chr7_1:75061846-75061865 Msa1038230:CDS 55.0%
!! TTTCTGGCTTCCCAGAGCGA+CGG + chr7_1:75061967-75061986 Msa1038230:CDS 55.0%
GCTGCCCTCGGATTATCGAA+AGG + chr7_1:75062386-75062405 Msa1038230:CDS 55.0%
GGGCTGGGATATGTGGTGAT+TGG + chr7_1:75062822-75062841 Msa1038230:CDS 55.0%
CAGGGTCAGTTCCGAGACTT+TGG - chr7_1:75063099-75063118 None:intergenic 55.0%
CAAAGTCTCGGAACTGACCC+TGG + chr7_1:75063097-75063116 Msa1038230:CDS 55.0%
!! GACCCTGGAGAGTTTGCTGT+TGG + chr7_1:75063112-75063131 Msa1038230:CDS 55.0%
AAACTCTCCGTTGGGAGGGA+AGG + chr7_1:75063368-75063387 Msa1038230:three_prime_UTR 55.0%
AACTCTCCGTTGGGAGGGAA+GGG + chr7_1:75063369-75063388 Msa1038230:three_prime_UTR 55.0%
CGGCGGTTGAGGAAGATGGA+CGG - chr7_1:75060442-75060461 None:intergenic 60.0%
! CATTTTCACCGTGGCGACGG+CGG - chr7_1:75060459-75060478 None:intergenic 60.0%
GGATCTTCTGCGGGGTTTGG+AGG - chr7_1:75060495-75060514 None:intergenic 60.0%
CCACTTGTCGGCATCATCGG+CGG + chr7_1:75060599-75060618 Msa1038230:CDS 60.0%
! CGCTCCACCGTTTTCGACAC+TGG + chr7_1:75060671-75060690 Msa1038230:CDS 60.0%
ACAGTGAGGACCGTCGCTCT+GGG - chr7_1:75061980-75061999 None:intergenic 60.0%
AACAGTGAGGACCGTCGCTC+TGG - chr7_1:75061981-75062000 None:intergenic 60.0%
AGAGCGACGGTCCTCACTGT+TGG + chr7_1:75061980-75061999 Msa1038230:CDS 60.0%
!! GAAGGTGTTGAGGCTGCCCT+CGG + chr7_1:75062374-75062393 Msa1038230:CDS 60.0%
ACTCTCCGTTGGGAGGGAAG+GGG + chr7_1:75063370-75063389 Msa1038230:three_prime_UTR 60.0%
TAAGGCCCCTTCCCTCCCAA+CGG - chr7_1:75063378-75063397 None:intergenic 60.0%
GCGACGGCGGTTGAGGAAGA+TGG - chr7_1:75060446-75060465 None:intergenic 65.0%
TTCCTCAACCGCCGTCGCCA+CGG + chr7_1:75060448-75060467 Msa1038230:CDS 65.0%
CGCCGTCGCCACGGTGAAAA+TGG + chr7_1:75060457-75060476 Msa1038230:CDS 65.0%
CTTCTGCGGGGTTTGGAGGG+TGG - chr7_1:75060491-75060510 None:intergenic 65.0%
CCGCCGATGATGCCGACAAG+TGG - chr7_1:75060602-75060621 None:intergenic 65.0%
CTTGTCGGCATCATCGGCGG+TGG + chr7_1:75060602-75060621 Msa1038230:CDS 65.0%
CTGCGGGGTTTGGAGGGTGG+TGG - chr7_1:75060488-75060507 None:intergenic 70.0%
CACCGTGGCGACGGCGGTTG+AGG - chr7_1:75060453-75060472 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 75060315 75063528 75060315 ID=Msa1038230;Name=Msa1038230
chr7_1 mRNA 75060315 75063528 75060315 ID=Msa1038230-mRNA-1;Parent=Msa1038230;Name=Msa1038230-mRNA-1;_AED=0.31;_eAED=0.31;_QI=62|0.71|0.87|0.87|1|1|8|285|499
chr7_1 exon 75060315 75060958 75060315 ID=Msa1038230-mRNA-1:exon:19075;Parent=Msa1038230-mRNA-1
chr7_1 exon 75061362 75061488 75061362 ID=Msa1038230-mRNA-1:exon:19076;Parent=Msa1038230-mRNA-1
chr7_1 exon 75061634 75061695 75061634 ID=Msa1038230-mRNA-1:exon:19077;Parent=Msa1038230-mRNA-1
chr7_1 exon 75061823 75062050 75061823 ID=Msa1038230-mRNA-1:exon:19078;Parent=Msa1038230-mRNA-1
chr7_1 exon 75062326 75062447 75062326 ID=Msa1038230-mRNA-1:exon:19079;Parent=Msa1038230-mRNA-1
chr7_1 exon 75062518 75062595 75062518 ID=Msa1038230-mRNA-1:exon:19080;Parent=Msa1038230-mRNA-1
chr7_1 exon 75062763 75062901 75062763 ID=Msa1038230-mRNA-1:exon:19081;Parent=Msa1038230-mRNA-1
chr7_1 exon 75063082 75063528 75063082 ID=Msa1038230-mRNA-1:exon:19082;Parent=Msa1038230-mRNA-1
chr7_1 five_prime_UTR 75060315 75060376 75060315 ID=Msa1038230-mRNA-1:five_prime_utr;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75060377 75060958 75060377 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75061362 75061488 75061362 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75061634 75061695 75061634 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75061823 75062050 75061823 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75062326 75062447 75062326 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75062518 75062595 75062518 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75062763 75062901 75062763 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 CDS 75063082 75063243 75063082 ID=Msa1038230-mRNA-1:cds;Parent=Msa1038230-mRNA-1
chr7_1 three_prime_UTR 75063244 75063528 75063244 ID=Msa1038230-mRNA-1:three_prime_utr;Parent=Msa1038230-mRNA-1
Gene Sequence

>Msa1038230

ATGTTTGGTCTGAATATGAAAACATGGAAATTGTTACCCTCCACAGCTCCATACTTAATCAACCGTCCATCTTCCTCAACCGCCGTCGCCACGGTGAAAATGGAAAAACCACCACCCTCCAAACCCCGCAGAAGATCCTCTTACGGAACTTCTCGTAAATCAATTCTCAAAAAAACCTTCAAACAAGAGCAAGTCACTTTCACCGCTCCTTTCTCCGACGAACCACTTGTCGGCATCATCGGCGGTGGTATCTCCGGTCTCATTTGCGCTATCTTCTTAGACAAACGCGGCATTCGCTCCACCGTTTTCGACACTGGTATTCATGGTCTTGGAGGAAGATTGGGAACAAGGGTTATTGATGATTCTTTGGTTTTTGACCATGCTGCTCAGTTTTTTACTGTCAATGATTCTCGTTTTGCTGAAATTGTTAATGTTTGGTTGGATAAGGGTTTGGTTCGAGAATGGAAGGGTACTGTAGGAGAGTTGAAGAATGGTGGTGAATTTCTTCCATTTTTACCCTCTCCTCCAAGATATATAGCTACTCGTGGAATGCGCTTTCTTGCTGATTCCTTACTCTCTGAGACTAGCTTGGTGAATGTGGAGAGACCGTGCTGGATCAGTAAATTGGAGCCATTTAATGGGATGTGGCACTTGAGTGAAAATGGGAAACCTCGTGGGAAGTTTGATGCAATTGTTGTTGCACACAATGGAAAATGTGCTAACCGCTTGCTTATGACATCGGGTTTGCCATTAATTGCTAAACAAATGAAGAGGCTGGAATTGAGTTCAATATGGGCCCTTTTAGCAGCGTTTGAGGAACCTCTTCCTTTTCTAGAGAATACAGAAGTTCCTTTTGAAGGAGCTTTTGTGAGAGGAATTGATTCAGTGTCATGGATGGCCAATAATACCAAGAAATTTCTGGCTTCCCAGAGCGACGGTCCTCACTGTTGGACCTTTCTAAGTACTGCTGCTTATGGAAAACAGAACAAGGTTCCACAGGAAAATATTCCTACTGTTACAGCAACAAGGGTAAAGGAAGGCATGCTAGAAGGTGTTGAGGCTGCCCTCGGATTATCGAAAGGGTTGCTTCCGAAACCTTTTTATACGAAGCTCCAACTATGGTTAGACTTACAGAATTTTCTTATTGTTCGTGACTTCTCAAATGCACAGTTGCTTGACAATCAAAATGTTAAATACACGGGTGCAGCTCTTCCAACTAACACACCTGGAGTTCCTTGCATCTTTGATCCCTTTGGAAGGGCTGGGATATGTGGTGATTGGCTGCTAGGTTCTAATATAGAGGCAGCAGTCATAAGTGGAATTGCTCTAGCTAACCATATTGCAGACTATATCCAAAGTCTCGGAACTGACCCTGGAGAGTTTGCTGTTGGTTTGAATCATGAGTTTCAACCACTGGAAGGGCATGATATTGGACAATTCCCAGGTTTGGGGTCAGAAGAAAAGATGACTGAAGCCCAAGTATATGAACTTGCCAAGTAG

Protein sequence

>Msa1038230

MFGLNMKTWKLLPSTAPYLINRPSSSTAVATVKMEKPPPSKPRRRSSYGTSRKSILKKTFKQEQVTFTAPFSDEPLVGIIGGGISGLICAIFLDKRGIRSTVFDTGIHGLGGRLGTRVIDDSLVFDHAAQFFTVNDSRFAEIVNVWLDKGLVREWKGTVGELKNGGEFLPFLPSPPRYIATRGMRFLADSLLSETSLVNVERPCWISKLEPFNGMWHLSENGKPRGKFDAIVVAHNGKCANRLLMTSGLPLIAKQMKRLELSSIWALLAAFEEPLPFLENTEVPFEGAFVRGIDSVSWMANNTKKFLASQSDGPHCWTFLSTAAYGKQNKVPQENIPTVTATRVKEGMLEGVEAALGLSKGLLPKPFYTKLQLWLDLQNFLIVRDFSNAQLLDNQNVKYTGAALPTNTPGVPCIFDPFGRAGICGDWLLGSNIEAAVISGIALANHIADYIQSLGTDPGEFAVGLNHEFQPLEGHDIGQFPGLGSEEKMTEAQVYELAK*