AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388000 MtrunA17_Chr4g0032081 96.564 553 19 0 1 553 1 553 0.0 1073
Msa0388000 MtrunA17_Chr4g0034391 26.199 271 170 9 91 345 71 327 5.91e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388000 AT3G46780.1 57.643 543 169 12 18 553 22 510 0.0 538
Msa0388000 AT3G18890.1 24.806 258 166 8 102 345 84 327 9.25e-15 77.8

Find 171 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATCCTCATCAGGCTTT+TGG 0.176821 3_1:-92101651 None:intergenic
CTGTGTTAATGCTGATAATT+TGG 0.194018 3_1:+92101933 Msa0388000:three_prime_UTR
TCCCTTGAGGTATCTTTAAT+TGG 0.206869 3_1:-92102387 None:intergenic
GGTTTACTCACACTGCTTCT+TGG 0.261784 3_1:-92101763 None:intergenic
AACATAGTAATGTTTATCTT+TGG 0.289226 3_1:-92098766 None:intergenic
TTGCAACCGGCAAAAGGTTT+TGG 0.289282 3_1:+92101580 Msa0388000:CDS
CATAGACATTGAACCTTGTT+TGG 0.291322 3_1:-92098927 None:intergenic
AAAGTTCGTCTACACGCTTC+AGG 0.292266 3_1:-92101104 None:intergenic
TCTTATAATGTGGTTGTCTT+AGG 0.298572 3_1:+92100448 Msa0388000:CDS
ACGGTGGCAACTTGCACCTT+TGG 0.301454 3_1:-92101676 None:intergenic
AAGGAGGTTAGGAAGGTATT+TGG 0.303897 3_1:+92101820 Msa0388000:CDS
GGAGGGTCATTTCCATCATT+TGG 0.308563 3_1:+92098964 Msa0388000:CDS
TCGTCTTGCTTCTCAATATA+AGG 0.316319 3_1:+92099290 Msa0388000:CDS
GCTTTCCTTCTTCCGTCTTC+CGG 0.318173 3_1:-92101256 None:intergenic
TGTTTAGTCACTGCTTTGTT+AGG 0.318987 3_1:-92101730 None:intergenic
GAAGGATCCTTCTTCCTTGC+AGG 0.319646 3_1:-92099147 None:intergenic
TCTTGCCTCTTCCTCTGCTT+TGG 0.320316 3_1:-92101302 None:intergenic
ACACGCTTCAGGGGAGCATT+TGG 0.321580 3_1:-92101093 None:intergenic
TAGATATAGCGAATTGGATT+TGG 0.324740 3_1:-92098683 None:intergenic
CGGTGGCAACTTGCACCTTT+GGG 0.328678 3_1:-92101675 None:intergenic
AACTCCTCAAAGTATGCAAT+TGG 0.328852 3_1:+92102091 Msa0388000:three_prime_UTR
TCATTTCCATCATTTGGATT+AGG 0.331642 3_1:+92098970 Msa0388000:CDS
GAAAGCCTATGCTGAAATAT+TGG 0.333830 3_1:+92101273 Msa0388000:CDS
ACTTGATTCTGCTCAGGAAT+TGG 0.345531 3_1:+92099266 Msa0388000:CDS
GTAATGTTTATCTTTGGCTT+TGG 0.350142 3_1:-92098760 None:intergenic
AGGCGACGGTTTATGAAATA+AGG 0.369922 3_1:+92102119 Msa0388000:three_prime_UTR
TTTGGTTTCTCATCCTCATC+AGG 0.375836 3_1:-92101556 None:intergenic
AACTCTAATAATAACCCTTT+CGG 0.379619 3_1:+92099036 Msa0388000:CDS
TTTGGGTTCTCATCCTCATC+AGG 0.381648 3_1:-92101658 None:intergenic
CAAGAGAAGGCAGAGGCAAC+TGG 0.382618 3_1:+92101436 Msa0388000:CDS
GACGTGGAGACCTCAGTTGC+TGG 0.382640 3_1:-92100175 None:intergenic
TTTGGACCGTTAATCTAGTT+TGG 0.388044 3_1:-92098742 None:intergenic
GGTGTTCAATATTTCTTCAA+TGG 0.392168 3_1:+92098641 None:intergenic
CCACCCAATTGCATACTTTG+AGG 0.392950 3_1:-92102095 None:intergenic
TCTTTGCCAGGTTTGTCATT+TGG 0.397884 3_1:+92099120 Msa0388000:CDS
TTAATCTAGTTTGGTGTTTG+TGG 0.398196 3_1:-92098733 None:intergenic
AGGAGAAACCGAAGGAGGTT+AGG 0.400481 3_1:+92101809 Msa0388000:CDS
CACGCTTCAGGGGAGCATTT+GGG 0.403880 3_1:-92101092 None:intergenic
AACCCTTTCGGATTCGACTT+TGG 0.404280 3_1:+92099048 Msa0388000:CDS
AGATAGTCTCTTGTTTGAAC+AGG 0.404451 3_1:-92101846 None:intergenic
TGACTTCTTTGATCCCTGTT+GGG 0.407851 3_1:+92099085 Msa0388000:CDS
TCAACCTACAATGTACTTGA+TGG 0.408054 3_1:+92100286 Msa0388000:CDS
TCCTGAGCAGAATCAAGTTC+AGG 0.410852 3_1:-92099261 None:intergenic
TACTTTATAGTCGTTCGAAC+CGG 0.411446 3_1:-92100482 None:intergenic
AACCATGTAATCAGATTAGC+AGG 0.417247 3_1:+92102023 Msa0388000:three_prime_UTR
GGCAGAGGCAACTGGAACTT+CGG 0.418026 3_1:+92101444 Msa0388000:CDS
TAATCTAGTTTGGTGTTTGT+GGG 0.423617 3_1:-92098732 None:intergenic
CGATACGAAATCAATTTGTA+AGG 0.426499 3_1:+92102317 Msa0388000:three_prime_UTR
GTGACTTCTTTGATCCCTGT+TGG 0.430673 3_1:+92099084 Msa0388000:CDS
AATACCTTCCTAACCTCCTT+CGG 0.433617 3_1:-92101817 None:intergenic
AACAGAGGGAGTAGAAATGA+GGG 0.436258 3_1:-92102359 None:intergenic
GAAGATATTGTTGAAGAAAG+AGG 0.437771 3_1:-92100314 None:intergenic
CTTGAGGTATCTTTAATTGG+AGG 0.445095 3_1:-92102384 None:intergenic
CAAACACCAAACTAGATTAA+CGG 0.447152 3_1:+92098736 Msa0388000:five_prime_UTR
CTTAGGATGAGATAAAGAAT+TGG 0.448913 3_1:-92098890 None:intergenic
AGATGCCTTGCAAGTAATTC+AGG 0.449862 3_1:+92100198 Msa0388000:CDS
GAAAGCCAAAGCAGAGGAAG+AGG 0.452766 3_1:+92101297 Msa0388000:CDS
TCCTGAACTTGATTCTGCTC+AGG 0.455608 3_1:+92099260 Msa0388000:CDS
AGTTTGATGAACCATTTGTT+TGG 0.455793 3_1:-92099017 None:intergenic
TGGTTCCTAAAATTCAACTT+AGG 0.457751 3_1:-92098907 None:intergenic
GGCAAGAGTGAAAGCTGAAA+AGG 0.458370 3_1:+92101318 Msa0388000:CDS
GTGCAAGTTGCCACCGTAAG+AGG 0.460111 3_1:+92101682 Msa0388000:CDS
CATTGCACAGACTTTGCTTA+GGG 0.461014 3_1:+92099212 Msa0388000:CDS
AGCCACCAACGATGCTATCC+TGG 0.462070 3_1:-92100622 None:intergenic
GACTCCATAGCAAAAGCAAT+AGG 0.462780 3_1:+92100106 Msa0388000:CDS
GCATTGCACAGACTTTGCTT+AGG 0.462895 3_1:+92099211 Msa0388000:CDS
TCCACTAGTGCTTGGCCTCA+AGG 0.469026 3_1:-92102213 None:intergenic
GTAAGCTAGATATAGCGAAT+TGG 0.470631 3_1:-92098689 None:intergenic
AACAAAGAGTGTGAACTTGT+TGG 0.472362 3_1:+92098826 Msa0388000:five_prime_UTR
CCAAAGTTGCAACCGGCAAA+AGG 0.474620 3_1:+92101574 Msa0388000:CDS
AGCCTTCGCCTGTCCTCTTA+CGG 0.481913 3_1:-92101695 None:intergenic
AAAGTATGCAATTGGGTGGC+AGG 0.482253 3_1:+92102099 Msa0388000:three_prime_UTR
AGGCCAAGCACTAGTGGACT+TGG 0.483727 3_1:+92102218 Msa0388000:three_prime_UTR
ATTCAGGCTGCTCAGCTAGC+AGG 0.485979 3_1:+92100214 Msa0388000:CDS
TGCTGCAACAACTAAGAAGA+TGG 0.488126 3_1:+92101351 Msa0388000:CDS
ACCAAAGTGGTTGTCACCAT+TGG 0.489290 3_1:+92100136 Msa0388000:CDS
GAACAGAGGGAGTAGAAATG+AGG 0.489759 3_1:-92102360 None:intergenic
TCAAGAGTTCTTGCAGAAAG+TGG 0.490402 3_1:+92100360 Msa0388000:CDS
ATAATTTGGTTGGACATGTA+TGG 0.492237 3_1:+92101947 Msa0388000:three_prime_UTR
TGAGAAACCAAAGTTGCAAC+CGG 0.495471 3_1:+92101567 Msa0388000:CDS
CCCTTGAGGCCAAGCACTAG+TGG 0.498863 3_1:+92102212 Msa0388000:three_prime_UTR
TTTCTCCAATATTTCAGCAT+AGG 0.501040 3_1:-92101278 None:intergenic
TAAAGAATTGGATGAAAGAG+TGG 0.503514 3_1:-92098878 None:intergenic
AAGTTCGTCTACACGCTTCA+GGG 0.503548 3_1:-92101103 None:intergenic
GATGCCATCAAGTACATTGT+AGG 0.505770 3_1:-92100290 None:intergenic
GTTAATGCTGATAATTTGGT+TGG 0.507509 3_1:+92101937 Msa0388000:three_prime_UTR
TGCAATTGGGTGGCAGGCGA+CGG 0.507970 3_1:+92102105 Msa0388000:three_prime_UTR
ACTCTCCGGCGCAAAATCAT+CGG 0.509928 3_1:-92100425 None:intergenic
CTCAAATTTCACATTAAAAG+CGG 0.510187 3_1:-92102176 None:intergenic
CCACTAGTGCTTGGCCTCAA+GGG 0.514000 3_1:-92102212 None:intergenic
GTGGGTGATAATTTGTTGCA+TGG 0.515287 3_1:+92102240 Msa0388000:three_prime_UTR
TTCCAAAGTCGAATCCGAAA+GGG 0.516074 3_1:-92099050 None:intergenic
CTATTCCGGAAGACGGAAGA+AGG 0.522679 3_1:+92101251 Msa0388000:CDS
CACAGACTTTGCTTAGGGAA+GGG 0.523241 3_1:+92099217 Msa0388000:CDS
GAAGGGTTTAGTGTTAGAGC+TGG 0.524692 3_1:+92099234 Msa0388000:CDS
ATGGCAAAAGTTCAGCTCAC+AGG 0.526351 3_1:+92101615 Msa0388000:CDS
ATCAAGTACATTGTAGGTTG+AGG 0.527543 3_1:-92100284 None:intergenic
AAGGCAAAAGTTAAGCTCAC+AGG 0.530732 3_1:+92101513 Msa0388000:CDS
GCACAGACTTTGCTTAGGGA+AGG 0.531835 3_1:+92099216 Msa0388000:CDS
GGGATCAAAGAAGTCACATC+AGG 0.531840 3_1:-92099078 None:intergenic
AATAGACAAAGGTTGAGACT+TGG 0.532124 3_1:-92100338 None:intergenic
AACTAAGAAGATGGAAGAAG+AGG 0.532351 3_1:+92101360 Msa0388000:CDS
TAAGAGGACAGGCGAAGGCT+CGG 0.536519 3_1:+92101698 Msa0388000:CDS
ATCTCAACTATAACCATCCA+TGG 0.536724 3_1:+92098852 Msa0388000:exon
ACTCCTCAAAGTATGCAATT+GGG 0.536803 3_1:+92102092 Msa0388000:three_prime_UTR
CTCCAATTAAAGATACCTCA+AGG 0.539656 3_1:+92102385 Msa0388000:three_prime_UTR
TGGAAGTCCTGCAAGGAAGA+AGG 0.540638 3_1:+92099140 Msa0388000:CDS
AGTTGCCACCGTAAGAGGAC+AGG 0.545851 3_1:+92101687 Msa0388000:CDS
GCTTTCAAAACAAGAAGCAC+AGG 0.545968 3_1:+92101390 Msa0388000:CDS
CCACCAAGTCCACTAGTGCT+TGG 0.550044 3_1:-92102221 None:intergenic
CACACAGGTTGCAGAAAACA+AGG 0.552585 3_1:+92100659 Msa0388000:CDS
CCAAGCACTAGTGGACTTGG+TGG 0.553022 3_1:+92102221 Msa0388000:three_prime_UTR
GGAATTATCTTGAATAGAAG+AGG 0.556658 3_1:-92098711 None:intergenic
GCCGGTGCTACTGGTCAAGC+TGG 0.556959 3_1:+92099183 Msa0388000:CDS
TCCCTGCTAATCTGATTACA+TGG 0.562637 3_1:-92102025 None:intergenic
TTGATGATGACTAGTGGAAG+TGG 0.562771 3_1:+92101872 Msa0388000:exon
GCCGGAGAGTTCTTATAATG+TGG 0.563804 3_1:+92100438 Msa0388000:CDS
ATAGGTTGTGCAAGTGTACT+CGG 0.564585 3_1:+92101068 Msa0388000:intron
GAAAGAGTGGGAACCATGGA+TGG 0.564627 3_1:-92098865 None:intergenic
GTCCAGGATAGCATCGTTGG+TGG 0.569990 3_1:+92100620 Msa0388000:CDS
TACAGCACTATTCCGGAAGA+CGG 0.572364 3_1:+92101244 Msa0388000:intron
ACCAATGGTGACAACCACTT+TGG 0.574757 3_1:-92100137 None:intergenic
TTTCCAAAGTCGAATCCGAA+AGG 0.578036 3_1:-92099051 None:intergenic
AAAGTCCAGGATAGCATCGT+TGG 0.579546 3_1:+92100617 Msa0388000:CDS
TTTAATTGGAGGAGAACAGA+GGG 0.584320 3_1:-92102373 None:intergenic
GAGGTTAGGAAGGTATTTGG+TGG 0.585362 3_1:+92101823 Msa0388000:CDS
GAAACCGAAGGAGGTTAGGA+AGG 0.586267 3_1:+92101813 Msa0388000:CDS
ACCAGCTTGACCAGTAGCAC+CGG 0.589273 3_1:-92099184 None:intergenic
TTATATAGGTAACAAAGTCC+AGG 0.589414 3_1:+92100604 Msa0388000:intron
GGACTTCCAAATGACAAACC+TGG 0.590602 3_1:-92099126 None:intergenic
TCTATATTGATGATGACTAG+TGG 0.595458 3_1:+92101866 Msa0388000:CDS
GAGGGAGTAGAAATGAGGGA+AGG 0.596880 3_1:-92102355 None:intergenic
AAAGAATTGGATGAAAGAGT+GGG 0.597103 3_1:-92098877 None:intergenic
TCAGATTATATCAAACGAAG+AGG 0.598598 3_1:+92100042 Msa0388000:intron
CACCGTAAGAGGACAGGCGA+AGG 0.599425 3_1:+92101693 Msa0388000:CDS
AGAAGATCAAGAGAAGGCAG+AGG 0.600588 3_1:+92101429 Msa0388000:CDS
AAAGATAGAGGAGAAACCGA+AGG 0.601183 3_1:+92101801 Msa0388000:CDS
AGCTAAAGAAGATCAAGAGA+AGG 0.604016 3_1:+92101423 Msa0388000:CDS
TACTTGCAAGGCATCTGACG+TGG 0.604597 3_1:-92100191 None:intergenic
ACCATTGGTCTCACAGAGAA+CGG 0.605549 3_1:+92100151 Msa0388000:CDS
TCCAATTAAAGATACCTCAA+GGG 0.607195 3_1:+92102386 Msa0388000:three_prime_UTR
CTTCGCCTGTCCTCTTACGG+TGG 0.611044 3_1:-92101692 None:intergenic
AGCAGCCTGAATTACTTGCA+AGG 0.614147 3_1:-92100203 None:intergenic
ACCGTTCTCTGTGAGACCAA+TGG 0.615314 3_1:-92100152 None:intergenic
ACCACATTATAAGAACTCTC+CGG 0.622153 3_1:-92100439 None:intergenic
CAGTGTGAGTAAACCAAAGG+AGG 0.623135 3_1:+92101771 Msa0388000:CDS
AAGCAGTGTGAGTAAACCAA+AGG 0.625751 3_1:+92101768 Msa0388000:CDS
AAGGAAGAAGGATCCTTCGA+CGG 0.630861 3_1:+92099152 Msa0388000:CDS
TGAGACAATCATGTCCCTTG+AGG 0.631251 3_1:-92102400 None:intergenic
TGTCATTTGGAAGTCCTGCA+AGG 0.633906 3_1:+92099133 Msa0388000:CDS
AAGAACTCTTGAATAGACAA+AGG 0.641968 3_1:-92100349 None:intergenic
GTATTTCGAATGCACCCTTG+AGG 0.642772 3_1:+92102198 Msa0388000:three_prime_UTR
AGTTCGTCTACACGCTTCAG+GGG 0.644617 3_1:-92101102 None:intergenic
AGAGAACGGTCCAGCAACTG+AGG 0.645643 3_1:+92100165 Msa0388000:CDS
ATTGGAGAAAGCCAAAGCAG+AGG 0.656499 3_1:+92101291 Msa0388000:CDS
AGCAATCCAAAAGCCTGATG+AGG 0.656743 3_1:+92101645 Msa0388000:CDS
AATAGGCAATGCAACCAAAG+TGG 0.658723 3_1:+92100123 Msa0388000:CDS
CTTTAATTGGAGGAGAACAG+AGG 0.659476 3_1:-92102374 None:intergenic
AACAAATCAAGATCCTGATG+AGG 0.661904 3_1:+92101543 Msa0388000:CDS
CCTCAAAGTATGCAATTGGG+TGG 0.663167 3_1:+92102095 Msa0388000:three_prime_UTR
GTCTTAGGCGAAGAAAACAC+CGG 0.671556 3_1:+92100463 Msa0388000:CDS
GGATGAAAGAGTGGGAACCA+TGG 0.674227 3_1:-92098869 None:intergenic
CAAGCACTAGTGGACTTGGT+GGG 0.675699 3_1:+92102222 Msa0388000:three_prime_UTR
TGATGTCTTCTCCAACACAC+AGG 0.677746 3_1:+92100644 Msa0388000:CDS
GATAGAGGAGAAACCGAAGG+AGG 0.690826 3_1:+92101804 Msa0388000:CDS
ATGGATAAACTCTGATTACG+TGG 0.694613 3_1:+92098660 Msa0388000:five_prime_UTR
TGATGAGGATGAGAACCCAA+AGG 0.696850 3_1:+92101660 Msa0388000:CDS
ACCATGTAATCAGATTAGCA+GGG 0.713703 3_1:+92102024 Msa0388000:three_prime_UTR
CATCGTAGATGACTGCAACG+TGG 0.714845 3_1:-92100243 None:intergenic
TAAGCAAAGTCTGTGCAATG+CGG 0.730043 3_1:-92099209 None:intergenic
GTCATCTACGATGAAAACAA+CGG 0.733428 3_1:+92100253 Msa0388000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGAAATTTTTCAT+TGG + chr3_1:92099988-92100007 Msa0388000:intron 10.0%
!! TTCTTAATCAATCATTAATT+TGG + chr3_1:92099327-92099346 Msa0388000:intron 15.0%
!! ATAAAAAAATTGAGTAAGTA+GGG - chr3_1:92099891-92099910 None:intergenic 15.0%
!! AACATAGTAATGTTTATCTT+TGG - chr3_1:92098769-92098788 None:intergenic 20.0%
!! AATTTGGATTATTAATGATC+AGG + chr3_1:92099343-92099362 Msa0388000:intron 20.0%
!!! AGAAAATAAGAGTATGTTTA+AGG - chr3_1:92099637-92099656 None:intergenic 20.0%
!! AATTTAATCTTTCAAACCTT+TGG - chr3_1:92099855-92099874 None:intergenic 20.0%
!! GATAAAAAAATTGAGTAAGT+AGG - chr3_1:92099892-92099911 None:intergenic 20.0%
!!! ACTCAATTTTTTTATCTAAC+AGG + chr3_1:92099896-92099915 Msa0388000:intron 20.0%
!!! AATTTTTCATTGGAGTTAAT+TGG + chr3_1:92099998-92100017 Msa0388000:intron 20.0%
!!! ATTTTTCATTGGAGTTAATT+GGG + chr3_1:92099999-92100018 Msa0388000:intron 20.0%
!!! AATACTTTTTGAGAAAATGA+TGG + chr3_1:92100578-92100597 Msa0388000:intron 20.0%
!! AAACAATAGCTAAAATCAAA+TGG + chr3_1:92101016-92101035 Msa0388000:intron 20.0%
!!! TGTTTTACAACATCAATAAT+AGG + chr3_1:92101161-92101180 Msa0388000:intron 20.0%
!!! CAATAATAGGTGAATAATTT+TGG + chr3_1:92101174-92101193 Msa0388000:intron 20.0%
!!! CAACTATAGAACATGTTTTT+TGG - chr3_1:92098805-92098824 None:intergenic 25.0%
! AATGTCTATGCTAAAAAATC+TGG + chr3_1:92098940-92098959 Msa0388000:CDS 25.0%
! AACTCTAATAATAACCCTTT+CGG + chr3_1:92099036-92099055 Msa0388000:CDS 25.0%
!! TTAATCACTGACATTTTCTT+TGG + chr3_1:92099472-92099491 Msa0388000:intron 25.0%
! ATTTCATCACTAAACTCAAA+AGG + chr3_1:92099550-92099569 Msa0388000:intron 25.0%
! TTTCATCACTAAACTCAAAA+GGG + chr3_1:92099551-92099570 Msa0388000:intron 25.0%
!! TAAGAGTATGTTTAAGGAAA+AGG - chr3_1:92099631-92099650 None:intergenic 25.0%
! TCAATTAATTACACTTCTAG+AGG + chr3_1:92099656-92099675 Msa0388000:intron 25.0%
! GAATGATAAAAGGATCAAAT+TGG + chr3_1:92099678-92099697 Msa0388000:intron 25.0%
! AAATATTAGGAAGTTAGCTA+GGG + chr3_1:92099802-92099821 Msa0388000:intron 25.0%
! TTATCTAACAGGTAATTTCA+TGG + chr3_1:92099907-92099926 Msa0388000:intron 25.0%
!! TTTTTCATTGGAGTTAATTG+GGG + chr3_1:92100000-92100019 Msa0388000:intron 25.0%
! AGTAAAGGAAGGTTAAAAAA+AGG - chr3_1:92100543-92100562 None:intergenic 25.0%
! ACAAATAAGAAAGTAAAGGA+AGG - chr3_1:92100554-92100573 None:intergenic 25.0%
! AGCAACAAATAAGAAAGTAA+AGG - chr3_1:92100558-92100577 None:intergenic 25.0%
! GAAAATGATGGTTGTTATAT+AGG + chr3_1:92100590-92100609 Msa0388000:intron 25.0%
! CTGAAAAAGTTTATAAACAG+TGG - chr3_1:92102149-92102168 None:intergenic 25.0%
! CTCAAATTTCACATTAAAAG+CGG - chr3_1:92102179-92102198 None:intergenic 25.0%
TAGATATAGCGAATTGGATT+TGG - chr3_1:92098686-92098705 None:intergenic 30.0%
GGAATTATCTTGAATAGAAG+AGG - chr3_1:92098714-92098733 None:intergenic 30.0%
!! TAATCTAGTTTGGTGTTTGT+GGG - chr3_1:92098735-92098754 None:intergenic 30.0%
!! TTAATCTAGTTTGGTGTTTG+TGG - chr3_1:92098736-92098755 None:intergenic 30.0%
CAAACACCAAACTAGATTAA+CGG + chr3_1:92098736-92098755 Msa0388000:five_prime_UTR 30.0%
! GTAATGTTTATCTTTGGCTT+TGG - chr3_1:92098763-92098782 None:intergenic 30.0%
AAAGAATTGGATGAAAGAGT+GGG - chr3_1:92098880-92098899 None:intergenic 30.0%
TAAAGAATTGGATGAAAGAG+TGG - chr3_1:92098881-92098900 None:intergenic 30.0%
CTTAGGATGAGATAAAGAAT+TGG - chr3_1:92098893-92098912 None:intergenic 30.0%
!! CTCATCCTAAGTTGAATTTT+AGG + chr3_1:92098902-92098921 Msa0388000:CDS 30.0%
TGGTTCCTAAAATTCAACTT+AGG - chr3_1:92098910-92098929 None:intergenic 30.0%
!! TGAATTTTAGGAACCAAACA+AGG + chr3_1:92098914-92098933 Msa0388000:CDS 30.0%
TCATTTCCATCATTTGGATT+AGG + chr3_1:92098970-92098989 Msa0388000:CDS 30.0%
! TGGTCTTTTTCTTCATCTTT+TGG - chr3_1:92099000-92099019 None:intergenic 30.0%
GAAGAAAAAGACCAAACAAA+TGG + chr3_1:92099006-92099025 Msa0388000:CDS 30.0%
AGTTTGATGAACCATTTGTT+TGG - chr3_1:92099020-92099039 None:intergenic 30.0%
!! GTATGCAACATCGTTTTTAT+AGG - chr3_1:92099371-92099390 None:intergenic 30.0%
TGCATACAATCTAGTATCAA+TGG + chr3_1:92099384-92099403 Msa0388000:intron 30.0%
AATGACATAAACATCAACGT+CGG - chr3_1:92099525-92099544 None:intergenic 30.0%
! ACTTCTAGAGGAATGATAAA+AGG + chr3_1:92099668-92099687 Msa0388000:intron 30.0%
TCTTGATAAAAAAGTTCCCA+TGG + chr3_1:92099773-92099792 Msa0388000:intron 30.0%
CCTAATATTTCTTGTTCCAT+GGG - chr3_1:92099792-92099811 None:intergenic 30.0%
TCCTAATATTTCTTGTTCCA+TGG - chr3_1:92099793-92099812 None:intergenic 30.0%
GAAATATTAGGAAGTTAGCT+AGG + chr3_1:92099801-92099820 Msa0388000:intron 30.0%
AATATTAGGAAGTTAGCTAG+GGG + chr3_1:92099803-92099822 Msa0388000:intron 30.0%
! TTTGGAGCAAGAAATTACAT+GGG - chr3_1:92099837-92099856 None:intergenic 30.0%
CAACAATTAAAACATGACAC+TGG + chr3_1:92099952-92099971 Msa0388000:intron 30.0%
TCAGATTATATCAAACGAAG+AGG + chr3_1:92100042-92100061 Msa0388000:intron 30.0%
GAAGATATTGTTGAAGAAAG+AGG - chr3_1:92100317-92100336 None:intergenic 30.0%
AAGAACTCTTGAATAGACAA+AGG - chr3_1:92100352-92100371 None:intergenic 30.0%
!!! GGTCAAACATGTTTTGATTA+AGG - chr3_1:92100407-92100426 None:intergenic 30.0%
TCTTATAATGTGGTTGTCTT+AGG + chr3_1:92100448-92100467 Msa0388000:CDS 30.0%
TTATATAGGTAACAAAGTCC+AGG + chr3_1:92100604-92100623 Msa0388000:intron 30.0%
TTAGATTAATCCAATGACCA+AGG - chr3_1:92100782-92100801 None:intergenic 30.0%
! GAAGCTTTTTATTGACCAAT+AGG + chr3_1:92101050-92101069 Msa0388000:intron 30.0%
!!! TTTGGTTTTTCTTCTAGTTG+AGG + chr3_1:92101192-92101211 Msa0388000:intron 30.0%
! TTTTCTTTACAGCACTATTC+CGG + chr3_1:92101237-92101256 Msa0388000:intron 30.0%
TTTCTCCAATATTTCAGCAT+AGG - chr3_1:92101281-92101300 None:intergenic 30.0%
!!! ATCTTTCTTTTTTCCTCCTT+TGG - chr3_1:92101787-92101806 None:intergenic 30.0%
!! TCTATATTGATGATGACTAG+TGG + chr3_1:92101866-92101885 Msa0388000:CDS 30.0%
CTGTGTTAATGCTGATAATT+TGG + chr3_1:92101933-92101952 Msa0388000:three_prime_UTR 30.0%
GTTAATGCTGATAATTTGGT+TGG + chr3_1:92101937-92101956 Msa0388000:three_prime_UTR 30.0%
ATAATTTGGTTGGACATGTA+TGG + chr3_1:92101947-92101966 Msa0388000:three_prime_UTR 30.0%
! CAATATTTTCCCAACGAAAA+TGG + chr3_1:92102052-92102071 Msa0388000:three_prime_UTR 30.0%
! TTGCAAATTCCATTTTCGTT+GGG - chr3_1:92102064-92102083 None:intergenic 30.0%
! ATTGCAAATTCCATTTTCGT+TGG - chr3_1:92102065-92102084 None:intergenic 30.0%
CGATACGAAATCAATTTGTA+AGG + chr3_1:92102317-92102336 Msa0388000:three_prime_UTR 30.0%
TCCAATTAAAGATACCTCAA+GGG + chr3_1:92102386-92102405 Msa0388000:three_prime_UTR 30.0%
ATGGATAAACTCTGATTACG+TGG + chr3_1:92098660-92098679 Msa0388000:five_prime_UTR 35.0%
GTAAGCTAGATATAGCGAAT+TGG - chr3_1:92098692-92098711 None:intergenic 35.0%
TTTGGACCGTTAATCTAGTT+TGG - chr3_1:92098745-92098764 None:intergenic 35.0%
! AACAAAGAGTGTGAACTTGT+TGG + chr3_1:92098826-92098845 Msa0388000:five_prime_UTR 35.0%
ATCTCAACTATAACCATCCA+TGG + chr3_1:92098852-92098871 Msa0388000:exon 35.0%
CATAGACATTGAACCTTGTT+TGG - chr3_1:92098930-92098949 None:intergenic 35.0%
GTCTATGCTAAAAAATCTGG+AGG + chr3_1:92098943-92098962 Msa0388000:CDS 35.0%
TATGCTAAAAAATCTGGAGG+AGG + chr3_1:92098946-92098965 Msa0388000:CDS 35.0%
ATGCTAAAAAATCTGGAGGA+GGG + chr3_1:92098947-92098966 Msa0388000:CDS 35.0%
! GGTTTTCCTAATCCAAATGA+TGG - chr3_1:92098979-92098998 None:intergenic 35.0%
TCGTCTTGCTTCTCAATATA+AGG + chr3_1:92099290-92099309 Msa0388000:CDS 35.0%
!! TCAAATTGGCCTTTGTGTAA+TGG + chr3_1:92099692-92099711 Msa0388000:intron 35.0%
ATTCATCAGCTGCATTTGAT+AGG - chr3_1:92099721-92099740 None:intergenic 35.0%
CCCATGGAACAAGAAATATT+AGG + chr3_1:92099789-92099808 Msa0388000:intron 35.0%
ATATTAGGAAGTTAGCTAGG+GGG + chr3_1:92099804-92099823 Msa0388000:intron 35.0%
!! CTTTGGAGCAAGAAATTACA+TGG - chr3_1:92099838-92099857 None:intergenic 35.0%
CATGTAATTTCTTGCTCCAA+AGG + chr3_1:92099836-92099855 Msa0388000:intron 35.0%
!! ATTGCCTATTGCTTTTGCTA+TGG - chr3_1:92100113-92100132 None:intergenic 35.0%
GTCATCTACGATGAAAACAA+CGG + chr3_1:92100253-92100272 Msa0388000:CDS 35.0%
ATCAAGTACATTGTAGGTTG+AGG - chr3_1:92100287-92100306 None:intergenic 35.0%
TCAACCTACAATGTACTTGA+TGG + chr3_1:92100286-92100305 Msa0388000:CDS 35.0%
AATAGACAAAGGTTGAGACT+TGG - chr3_1:92100341-92100360 None:intergenic 35.0%
ACCACATTATAAGAACTCTC+CGG - chr3_1:92100442-92100461 None:intergenic 35.0%
TACTTTATAGTCGTTCGAAC+CGG - chr3_1:92100485-92100504 None:intergenic 35.0%
! GGTATCTGTTTTACATTAGC+TGG + chr3_1:92100680-92100699 Msa0388000:intron 35.0%
ATATCTCGACCAAACAACTT+AGG + chr3_1:92100816-92100835 Msa0388000:intron 35.0%
GAAAGCCTATGCTGAAATAT+TGG + chr3_1:92101273-92101292 Msa0388000:CDS 35.0%
AACTAAGAAGATGGAAGAAG+AGG + chr3_1:92101360-92101379 Msa0388000:CDS 35.0%
AGCTAAAGAAGATCAAGAGA+AGG + chr3_1:92101423-92101442 Msa0388000:CDS 35.0%
! GGTAGAAGACATTTTGAACA+AGG + chr3_1:92101465-92101484 Msa0388000:CDS 35.0%
AACAAATCAAGATCCTGATG+AGG + chr3_1:92101543-92101562 Msa0388000:CDS 35.0%
! TGTTTAGTCACTGCTTTGTT+AGG - chr3_1:92101733-92101752 None:intergenic 35.0%
GGAGGAAAAAAGAAAGATAG+AGG + chr3_1:92101789-92101808 Msa0388000:CDS 35.0%
! AGATAGTCTCTTGTTTGAAC+AGG - chr3_1:92101849-92101868 None:intergenic 35.0%
!!! TGGACATGTATGGTTTTGTA+AGG + chr3_1:92101957-92101976 Msa0388000:three_prime_UTR 35.0%
AACCATGTAATCAGATTAGC+AGG + chr3_1:92102023-92102042 Msa0388000:three_prime_UTR 35.0%
ACCATGTAATCAGATTAGCA+GGG + chr3_1:92102024-92102043 Msa0388000:three_prime_UTR 35.0%
AACTCCTCAAAGTATGCAAT+TGG + chr3_1:92102091-92102110 Msa0388000:three_prime_UTR 35.0%
ACTCCTCAAAGTATGCAATT+GGG + chr3_1:92102092-92102111 Msa0388000:three_prime_UTR 35.0%
TTTAATTGGAGGAGAACAGA+GGG - chr3_1:92102376-92102395 None:intergenic 35.0%
! CTTGAGGTATCTTTAATTGG+AGG - chr3_1:92102387-92102406 None:intergenic 35.0%
CTCCAATTAAAGATACCTCA+AGG + chr3_1:92102385-92102404 Msa0388000:three_prime_UTR 35.0%
! TCCCTTGAGGTATCTTTAAT+TGG - chr3_1:92102390-92102409 None:intergenic 35.0%
TTCCAAAGTCGAATCCGAAA+GGG - chr3_1:92099053-92099072 None:intergenic 40.0%
TTTCCAAAGTCGAATCCGAA+AGG - chr3_1:92099054-92099073 None:intergenic 40.0%
TGACTTCTTTGATCCCTGTT+GGG + chr3_1:92099085-92099104 Msa0388000:CDS 40.0%
TCTTTGCCAGGTTTGTCATT+TGG + chr3_1:92099120-92099139 Msa0388000:CDS 40.0%
TAAGCAAAGTCTGTGCAATG+CGG - chr3_1:92099212-92099231 None:intergenic 40.0%
CATTGCACAGACTTTGCTTA+GGG + chr3_1:92099212-92099231 Msa0388000:CDS 40.0%
ACTTGATTCTGCTCAGGAAT+TGG + chr3_1:92099266-92099285 Msa0388000:CDS 40.0%
AGCTAGAGAGCAATACAAGA+AGG - chr3_1:92099590-92099609 None:intergenic 40.0%
GATAGGCTTCCATTACACAA+AGG - chr3_1:92099704-92099723 None:intergenic 40.0%
AAAACATGACACTGGACTGT+TGG + chr3_1:92099960-92099979 Msa0388000:intron 40.0%
GACTCCATAGCAAAAGCAAT+AGG + chr3_1:92100106-92100125 Msa0388000:CDS 40.0%
AATAGGCAATGCAACCAAAG+TGG + chr3_1:92100123-92100142 Msa0388000:CDS 40.0%
AGATGCCTTGCAAGTAATTC+AGG + chr3_1:92100198-92100217 Msa0388000:CDS 40.0%
GATGCCATCAAGTACATTGT+AGG - chr3_1:92100293-92100312 None:intergenic 40.0%
TCAAGAGTTCTTGCAGAAAG+TGG + chr3_1:92100360-92100379 Msa0388000:CDS 40.0%
GTCTAGTAAGTCGATTAGCA+TGG + chr3_1:92100725-92100744 Msa0388000:intron 40.0%
AACTCTGCACCTAAGTTGTT+TGG - chr3_1:92100828-92100847 None:intergenic 40.0%
AGTACACTTGCACAACCTAT+TGG - chr3_1:92101068-92101087 None:intergenic 40.0%
ATAGGTTGTGCAAGTGTACT+CGG + chr3_1:92101068-92101087 Msa0388000:intron 40.0%
!! GGTTTTTCTTCTAGTTGAGG+AGG + chr3_1:92101195-92101214 Msa0388000:intron 40.0%
TGCTGCAACAACTAAGAAGA+TGG + chr3_1:92101351-92101370 Msa0388000:CDS 40.0%
! GCTTTCAAAACAAGAAGCAC+AGG + chr3_1:92101390-92101409 Msa0388000:CDS 40.0%
AAGGCAAAAGTTAAGCTCAC+AGG + chr3_1:92101513-92101532 Msa0388000:CDS 40.0%
! TTTGGTTTCTCATCCTCATC+AGG - chr3_1:92101559-92101578 None:intergenic 40.0%
TGAGAAACCAAAGTTGCAAC+CGG + chr3_1:92101567-92101586 Msa0388000:CDS 40.0%
AAGCAGTGTGAGTAAACCAA+AGG + chr3_1:92101768-92101787 Msa0388000:CDS 40.0%
AAAGATAGAGGAGAAACCGA+AGG + chr3_1:92101801-92101820 Msa0388000:CDS 40.0%
AATACCTTCCTAACCTCCTT+CGG - chr3_1:92101820-92101839 None:intergenic 40.0%
!! AAGGAGGTTAGGAAGGTATT+TGG + chr3_1:92101820-92101839 Msa0388000:CDS 40.0%
!! TTGATGATGACTAGTGGAAG+TGG + chr3_1:92101872-92101891 Msa0388000:exon 40.0%
TCCCTGCTAATCTGATTACA+TGG - chr3_1:92102028-92102047 None:intergenic 40.0%
AGGCGACGGTTTATGAAATA+AGG + chr3_1:92102119-92102138 Msa0388000:three_prime_UTR 40.0%
!! GTGGGTGATAATTTGTTGCA+TGG + chr3_1:92102240-92102259 Msa0388000:three_prime_UTR 40.0%
AACAGAGGGAGTAGAAATGA+GGG - chr3_1:92102362-92102381 None:intergenic 40.0%
CTTTAATTGGAGGAGAACAG+AGG - chr3_1:92102377-92102396 None:intergenic 40.0%
GGAGGGTCATTTCCATCATT+TGG + chr3_1:92098964-92098983 Msa0388000:CDS 45.0%
AACCCTTTCGGATTCGACTT+TGG + chr3_1:92099048-92099067 Msa0388000:CDS 45.0%
GGGATCAAAGAAGTCACATC+AGG - chr3_1:92099081-92099100 None:intergenic 45.0%
GTGACTTCTTTGATCCCTGT+TGG + chr3_1:92099084-92099103 Msa0388000:CDS 45.0%
ATCCCTGTTGGGAGCAAAAA+CGG + chr3_1:92099096-92099115 Msa0388000:CDS 45.0%
!! AACCGTTTTTGCTCCCAACA+GGG - chr3_1:92099101-92099120 None:intergenic 45.0%
AGCAAAAACGGTTCTTTGCC+AGG + chr3_1:92099108-92099127 Msa0388000:CDS 45.0%
GGACTTCCAAATGACAAACC+TGG - chr3_1:92099129-92099148 None:intergenic 45.0%
! TGTCATTTGGAAGTCCTGCA+AGG + chr3_1:92099133-92099152 Msa0388000:CDS 45.0%
AAGGAAGAAGGATCCTTCGA+CGG + chr3_1:92099152-92099171 Msa0388000:CDS 45.0%
GCATTGCACAGACTTTGCTT+AGG + chr3_1:92099211-92099230 Msa0388000:CDS 45.0%
CACAGACTTTGCTTAGGGAA+GGG + chr3_1:92099217-92099236 Msa0388000:CDS 45.0%
GAAGGGTTTAGTGTTAGAGC+TGG + chr3_1:92099234-92099253 Msa0388000:CDS 45.0%
TCCTGAACTTGATTCTGCTC+AGG + chr3_1:92099260-92099279 Msa0388000:CDS 45.0%
TCCTGAGCAGAATCAAGTTC+AGG - chr3_1:92099264-92099283 None:intergenic 45.0%
CTAGTATCAATGGCGTGTGT+CGG + chr3_1:92099394-92099413 Msa0388000:intron 45.0%
TAGTATCAATGGCGTGTGTC+GGG + chr3_1:92099395-92099414 Msa0388000:intron 45.0%
ACCAAAGTGGTTGTCACCAT+TGG + chr3_1:92100136-92100155 Msa0388000:CDS 45.0%
ACCAATGGTGACAACCACTT+TGG - chr3_1:92100140-92100159 None:intergenic 45.0%
! ACCATTGGTCTCACAGAGAA+CGG + chr3_1:92100151-92100170 Msa0388000:CDS 45.0%
AGCAGCCTGAATTACTTGCA+AGG - chr3_1:92100206-92100225 None:intergenic 45.0%
! TTTGACCGATGATTTTGCGC+CGG + chr3_1:92100420-92100439 Msa0388000:CDS 45.0%
GCCGGAGAGTTCTTATAATG+TGG + chr3_1:92100438-92100457 Msa0388000:CDS 45.0%
GTCTTAGGCGAAGAAAACAC+CGG + chr3_1:92100463-92100482 Msa0388000:CDS 45.0%
AAAGTCCAGGATAGCATCGT+TGG + chr3_1:92100617-92100636 Msa0388000:CDS 45.0%
TGATGTCTTCTCCAACACAC+AGG + chr3_1:92100644-92100663 Msa0388000:CDS 45.0%
! GTTTTCTGCAACCTGTGTGT+TGG - chr3_1:92100658-92100677 None:intergenic 45.0%
CACACAGGTTGCAGAAAACA+AGG + chr3_1:92100659-92100678 Msa0388000:CDS 45.0%
TTCAACTGCACCTTGGTCAT+TGG + chr3_1:92100769-92100788 Msa0388000:intron 45.0%
AAGTTCGTCTACACGCTTCA+GGG - chr3_1:92101106-92101125 None:intergenic 45.0%
AAAGTTCGTCTACACGCTTC+AGG - chr3_1:92101107-92101126 None:intergenic 45.0%
! AGCGTGTAGACGAACTTTTC+AGG + chr3_1:92101109-92101128 Msa0388000:CDS 45.0%
TACAGCACTATTCCGGAAGA+CGG + chr3_1:92101244-92101263 Msa0388000:intron 45.0%
ATTGGAGAAAGCCAAAGCAG+AGG + chr3_1:92101291-92101310 Msa0388000:CDS 45.0%
GGCAAGAGTGAAAGCTGAAA+AGG + chr3_1:92101318-92101337 Msa0388000:CDS 45.0%
AGAAGATCAAGAGAAGGCAG+AGG + chr3_1:92101429-92101448 Msa0388000:CDS 45.0%
! AAGGCTAAAGCTTTTCGTGC+AGG + chr3_1:92101484-92101503 Msa0388000:CDS 45.0%
! AGGCTAAAGCTTTTCGTGCA+GGG + chr3_1:92101485-92101504 Msa0388000:CDS 45.0%
! CTTTTCGTGCAGGGTTTTCA+AGG + chr3_1:92101494-92101513 Msa0388000:CDS 45.0%
! TTGCAACCGGCAAAAGGTTT+TGG + chr3_1:92101580-92101599 Msa0388000:CDS 45.0%
!! GTTTTGGTGCAGGGTTTTCA+TGG + chr3_1:92101596-92101615 Msa0388000:CDS 45.0%
ATGGCAAAAGTTCAGCTCAC+AGG + chr3_1:92101615-92101634 Msa0388000:CDS 45.0%
AGCAATCCAAAAGCCTGATG+AGG + chr3_1:92101645-92101664 Msa0388000:CDS 45.0%
! TCTCATCCTCATCAGGCTTT+TGG - chr3_1:92101654-92101673 None:intergenic 45.0%
! TTTGGGTTCTCATCCTCATC+AGG - chr3_1:92101661-92101680 None:intergenic 45.0%
TGATGAGGATGAGAACCCAA+AGG + chr3_1:92101660-92101679 Msa0388000:CDS 45.0%
GGTTTACTCACACTGCTTCT+TGG - chr3_1:92101766-92101785 None:intergenic 45.0%
CAGTGTGAGTAAACCAAAGG+AGG + chr3_1:92101771-92101790 Msa0388000:CDS 45.0%
!! GAGGTTAGGAAGGTATTTGG+TGG + chr3_1:92101823-92101842 Msa0388000:CDS 45.0%
CCACCCAATTGCATACTTTG+AGG - chr3_1:92102098-92102117 None:intergenic 45.0%
CCTCAAAGTATGCAATTGGG+TGG + chr3_1:92102095-92102114 Msa0388000:three_prime_UTR 45.0%
AAAGTATGCAATTGGGTGGC+AGG + chr3_1:92102099-92102118 Msa0388000:three_prime_UTR 45.0%
GTATTTCGAATGCACCCTTG+AGG + chr3_1:92102198-92102217 Msa0388000:three_prime_UTR 45.0%
GAACAGAGGGAGTAGAAATG+AGG - chr3_1:92102363-92102382 None:intergenic 45.0%
TGAGACAATCATGTCCCTTG+AGG - chr3_1:92102403-92102422 None:intergenic 45.0%
!!! AACTTTTTTATAAAATATAT+AGG - chr3_1:92100948-92100967 None:intergenic 5.0%
GAAAGAGTGGGAACCATGGA+TGG - chr3_1:92098868-92098887 None:intergenic 50.0%
GGATGAAAGAGTGGGAACCA+TGG - chr3_1:92098872-92098891 None:intergenic 50.0%
!! GAACCGTTTTTGCTCCCAAC+AGG - chr3_1:92099102-92099121 None:intergenic 50.0%
TGGAAGTCCTGCAAGGAAGA+AGG + chr3_1:92099140-92099159 Msa0388000:CDS 50.0%
GAAGGATCCTTCTTCCTTGC+AGG - chr3_1:92099150-92099169 None:intergenic 50.0%
! CCTTCGACGGTTTTTGTTGC+CGG + chr3_1:92099165-92099184 Msa0388000:CDS 50.0%
!!! GTTTTTGTTGCCGGTGCTAC+TGG + chr3_1:92099174-92099193 Msa0388000:CDS 50.0%
GCACAGACTTTGCTTAGGGA+AGG + chr3_1:92099216-92099235 Msa0388000:CDS 50.0%
TAGGAAGTTAGCTAGGGGGA+AGG + chr3_1:92099808-92099827 Msa0388000:intron 50.0%
AGGAAGTTAGCTAGGGGGAA+GGG + chr3_1:92099809-92099828 Msa0388000:intron 50.0%
ACCGTTCTCTGTGAGACCAA+TGG - chr3_1:92100155-92100174 None:intergenic 50.0%
! TACTTGCAAGGCATCTGACG+TGG - chr3_1:92100194-92100213 None:intergenic 50.0%
CATCGTAGATGACTGCAACG+TGG - chr3_1:92100246-92100265 None:intergenic 50.0%
ACTCTCCGGCGCAAAATCAT+CGG - chr3_1:92100428-92100447 None:intergenic 50.0%
CCAAGGTGCAGTTGAAGAGA+TGG - chr3_1:92100765-92100784 None:intergenic 50.0%
CCATCTCTTCAACTGCACCT+TGG + chr3_1:92100762-92100781 Msa0388000:intron 50.0%
AGTTCGTCTACACGCTTCAG+GGG - chr3_1:92101105-92101124 None:intergenic 50.0%
CTATTCCGGAAGACGGAAGA+AGG + chr3_1:92101251-92101270 Msa0388000:CDS 50.0%
GCTTTCCTTCTTCCGTCTTC+CGG - chr3_1:92101259-92101278 None:intergenic 50.0%
GAAAGCCAAAGCAGAGGAAG+AGG + chr3_1:92101297-92101316 Msa0388000:CDS 50.0%
TCTTGCCTCTTCCTCTGCTT+TGG - chr3_1:92101305-92101324 None:intergenic 50.0%
!! CCTTTTGCCGGTTGCAACTT+TGG - chr3_1:92101577-92101596 None:intergenic 50.0%
CCAAAGTTGCAACCGGCAAA+AGG + chr3_1:92101574-92101593 Msa0388000:CDS 50.0%
! CCTGCACCAAAACCTTTTGC+CGG - chr3_1:92101589-92101608 None:intergenic 50.0%
!! CGGCAAAAGGTTTTGGTGCA+GGG + chr3_1:92101587-92101606 Msa0388000:CDS 50.0%
GATAGAGGAGAAACCGAAGG+AGG + chr3_1:92101804-92101823 Msa0388000:CDS 50.0%
AGGAGAAACCGAAGGAGGTT+AGG + chr3_1:92101809-92101828 Msa0388000:CDS 50.0%
GAAACCGAAGGAGGTTAGGA+AGG + chr3_1:92101813-92101832 Msa0388000:CDS 50.0%
!! CAAGCACTAGTGGACTTGGT+GGG + chr3_1:92102222-92102241 Msa0388000:three_prime_UTR 50.0%
GAGGGAGTAGAAATGAGGGA+AGG - chr3_1:92102358-92102377 None:intergenic 50.0%
CCGGCAACAAAAACCGTCGA+AGG - chr3_1:92099168-92099187 None:intergenic 55.0%
ACCAGCTTGACCAGTAGCAC+CGG - chr3_1:92099187-92099206 None:intergenic 55.0%
AGAGAACGGTCCAGCAACTG+AGG + chr3_1:92100165-92100184 Msa0388000:CDS 55.0%
ATTCAGGCTGCTCAGCTAGC+AGG + chr3_1:92100214-92100233 Msa0388000:CDS 55.0%
GTCCAGGATAGCATCGTTGG+TGG + chr3_1:92100620-92100639 Msa0388000:CDS 55.0%
AGCCACCAACGATGCTATCC+TGG - chr3_1:92100625-92100644 None:intergenic 55.0%
!! CACGCTTCAGGGGAGCATTT+GGG - chr3_1:92101095-92101114 None:intergenic 55.0%
!! ACACGCTTCAGGGGAGCATT+TGG - chr3_1:92101096-92101115 None:intergenic 55.0%
CAAGAGAAGGCAGAGGCAAC+TGG + chr3_1:92101436-92101455 Msa0388000:CDS 55.0%
GGCAGAGGCAACTGGAACTT+CGG + chr3_1:92101444-92101463 Msa0388000:CDS 55.0%
!! CCGGCAAAAGGTTTTGGTGC+AGG + chr3_1:92101586-92101605 Msa0388000:CDS 55.0%
CGGTGGCAACTTGCACCTTT+GGG - chr3_1:92101678-92101697 None:intergenic 55.0%
ACGGTGGCAACTTGCACCTT+TGG - chr3_1:92101679-92101698 None:intergenic 55.0%
GTGCAAGTTGCCACCGTAAG+AGG + chr3_1:92101682-92101701 Msa0388000:CDS 55.0%
AGTTGCCACCGTAAGAGGAC+AGG + chr3_1:92101687-92101706 Msa0388000:CDS 55.0%
AGCCTTCGCCTGTCCTCTTA+CGG - chr3_1:92101698-92101717 None:intergenic 55.0%
TAAGAGGACAGGCGAAGGCT+CGG + chr3_1:92101698-92101717 Msa0388000:CDS 55.0%
CCACTAGTGCTTGGCCTCAA+GGG - chr3_1:92102215-92102234 None:intergenic 55.0%
TCCACTAGTGCTTGGCCTCA+AGG - chr3_1:92102216-92102235 None:intergenic 55.0%
!! AGGCCAAGCACTAGTGGACT+TGG + chr3_1:92102218-92102237 Msa0388000:three_prime_UTR 55.0%
CCACCAAGTCCACTAGTGCT+TGG - chr3_1:92102224-92102243 None:intergenic 55.0%
!! CCAAGCACTAGTGGACTTGG+TGG + chr3_1:92102221-92102240 Msa0388000:three_prime_UTR 55.0%
GACGTGGAGACCTCAGTTGC+TGG - chr3_1:92100178-92100197 None:intergenic 60.0%
CTTCGCCTGTCCTCTTACGG+TGG - chr3_1:92101695-92101714 None:intergenic 60.0%
CACCGTAAGAGGACAGGCGA+AGG + chr3_1:92101693-92101712 Msa0388000:CDS 60.0%
TGCAATTGGGTGGCAGGCGA+CGG + chr3_1:92102105-92102124 Msa0388000:three_prime_UTR 60.0%
CCCTTGAGGCCAAGCACTAG+TGG + chr3_1:92102212-92102231 Msa0388000:three_prime_UTR 60.0%
!! GCCGGTGCTACTGGTCAAGC+TGG + chr3_1:92099183-92099202 Msa0388000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 92098643 92102438 92098643 ID=Msa0388000;Name=Msa0388000
chr3_1 mRNA 92098643 92102438 92098643 ID=Msa0388000-mRNA-1;Parent=Msa0388000;Name=Msa0388000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=228|1|1|1|1|1|5|553|553
chr3_1 exon 92098643 92099311 92098643 ID=Msa0388000-mRNA-1:exon:25847;Parent=Msa0388000-mRNA-1
chr3_1 exon 92100046 92100501 92100046 ID=Msa0388000-mRNA-1:exon:25848;Parent=Msa0388000-mRNA-1
chr3_1 exon 92100612 92100680 92100612 ID=Msa0388000-mRNA-1:exon:25849;Parent=Msa0388000-mRNA-1
chr3_1 exon 92101072 92101130 92101072 ID=Msa0388000-mRNA-1:exon:25850;Parent=Msa0388000-mRNA-1
chr3_1 exon 92101249 92102438 92101249 ID=Msa0388000-mRNA-1:exon:25851;Parent=Msa0388000-mRNA-1
chr3_1 five_prime_UTR 92098643 92098870 92098643 ID=Msa0388000-mRNA-1:five_prime_utr;Parent=Msa0388000-mRNA-1
chr3_1 CDS 92098871 92099311 92098871 ID=Msa0388000-mRNA-1:cds;Parent=Msa0388000-mRNA-1
chr3_1 CDS 92100046 92100501 92100046 ID=Msa0388000-mRNA-1:cds;Parent=Msa0388000-mRNA-1
chr3_1 CDS 92100612 92100680 92100612 ID=Msa0388000-mRNA-1:cds;Parent=Msa0388000-mRNA-1
chr3_1 CDS 92101072 92101130 92101072 ID=Msa0388000-mRNA-1:cds;Parent=Msa0388000-mRNA-1
chr3_1 CDS 92101249 92101885 92101249 ID=Msa0388000-mRNA-1:cds;Parent=Msa0388000-mRNA-1
chr3_1 three_prime_UTR 92101886 92102438 92101886 ID=Msa0388000-mRNA-1:three_prime_utr;Parent=Msa0388000-mRNA-1
Gene Sequence

>Msa0388000

ATGGTTCCCACTCTTTCATCCAATTCTTTATCTCATCCTAAGTTGAATTTTAGGAACCAAACAAGGTTCAATGTCTATGCTAAAAAATCTGGAGGAGGGTCATTTCCATCATTTGGATTAGGAAAACCAAAAGATGAAGAAAAAGACCAAACAAATGGTTCATCAAACTCTAATAATAACCCTTTCGGATTCGACTTTGGAAAATTGCCTGATGTGACTTCTTTGATCCCTGTTGGGAGCAAAAACGGTTCTTTGCCAGGTTTGTCATTTGGAAGTCCTGCAAGGAAGAAGGATCCTTCGACGGTTTTTGTTGCCGGTGCTACTGGTCAAGCTGGTATCCGCATTGCACAGACTTTGCTTAGGGAAGGGTTTAGTGTTAGAGCTGGTGTTCCTGAACTTGATTCTGCTCAGGAATTGGCTCGTCTTGCTTCTCAATATAAGATTATATCAAACGAAGAGGCAAAGCGTCTCAATGCTGTGCAGTCAAGCTTTGATGATGCAGACTCCATAGCAAAAGCAATAGGCAATGCAACCAAAGTGGTTGTCACCATTGGTCTCACAGAGAACGGTCCAGCAACTGAGGTCTCCACGTCAGATGCCTTGCAAGTAATTCAGGCTGCTCAGCTAGCAGGCGTAGACCACGTTGCAGTCATCTACGATGAAAACAACGGCGTCAGCACCTCAACCTACAATGTACTTGATGGCATCTCCTCTTTCTTCAACAATATCTTCTCCAAGTCTCAACCTTTGTCTATTCAAGAGTTCTTGCAGAAAGTGGTTGAAACAGATGTCAAATATACCTTAATCAAAACATGTTTGACCGATGATTTTGCGCCGGAGAGTTCTTATAATGTGGTTGTCTTAGGCGAAGAAAACACCGGTTCGAACGACTATAAAGTAACAAAGTCCAGGATAGCATCGTTGGTGGCTGATGTCTTCTCCAACACACAGGTTGCAGAAAACAAGGTTGTGCAAGTGTACTCGGACCCAAATGCTCCCCTGAAGCGTGTAGACGAACTTTTCAGCACTATTCCGGAAGACGGAAGAAGGAAAGCCTATGCTGAAATATTGGAGAAAGCCAAAGCAGAGGAAGAGGCAAGAGTGAAAGCTGAAAAGGCACGCGAAACTGCTGCAACAACTAAGAAGATGGAAGAAGAGGCACTGAAGCTTTCAAAACAAGAAGCACAGGCTTCTAATCTAGCTAAAGAAGATCAAGAGAAGGCAGAGGCAACTGGAACTTCGGTAGAAGACATTTTGAACAAGGCTAAAGCTTTTCGTGCAGGGTTTTCAAGGCAAAAGTTAAGCTCACAGGTTGCTACAACAAATCAAGATCCTGATGAGGATGAGAAACCAAAGTTGCAACCGGCAAAAGGTTTTGGTGCAGGGTTTTCATGGCAAAAGTTCAGCTCACAGGTTGCTACAGCAATCCAAAAGCCTGATGAGGATGAGAACCCAAAGGTGCAAGTTGCCACCGTAAGAGGACAGGCGAAGGCTCGGAGTCTCATTCCTAACAAAGCAGTGACTAAACAAACAACAACTCCAAGAAGCAGTGTGAGTAAACCAAAGGAGGAAAAAAGAAAGATAGAGGAGAAACCGAAGGAGGTTAGGAAGGTATTTGGTGGCCTGTTCAAACAAGAGACTATCTATATTGATGATGACTAG
Protein sequence

>Msa0388000

MVPTLSSNSLSHPKLNFRNQTRFNVYAKKSGGGSFPSFGLGKPKDEEKDQTNGSSNSNNNPFGFDFGKLPDVTSLIPVGSKNGSLPGLSFGSPARKKDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELDSAQELARLASQYKIISNEEAKRLNAVQSSFDDADSIAKAIGNATKVVVTIGLTENGPATEVSTSDALQVIQAAQLAGVDHVAVIYDENNGVSTSTYNVLDGISSFFNNIFSKSQPLSIQEFLQKVVETDVKYTLIKTCLTDDFAPESSYNVVVLGEENTGSNDYKVTKSRIASLVADVFSNTQVAENKVVQVYSDPNAPLKRVDELFSTIPEDGRRKAYAEILEKAKAEEEARVKAEKARETAATTKKMEEEALKLSKQEAQASNLAKEDQEKAEATGTSVEDILNKAKAFRAGFSRQKLSSQVATTNQDPDEDEKPKLQPAKGFGAGFSWQKFSSQVATAIQKPDEDENPKVQVATVRGQAKARSLIPNKAVTKQTTTPRSSVSKPKEEKRKIEEKPKEVRKVFGGLFKQETIYIDDD*