AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559890 MtrunA17_Chr4g0049821 90.452 398 17 3 1 377 1 398 0.0 706
Msa0559890 MtrunA17_Chr7g0241071 40.436 413 193 13 1 364 1 409 5.18e-84 261
Msa0559890 MtrunA17_Chr2g0278581 39.871 311 146 8 82 362 32 331 1.84e-65 211
Msa0559890 MtrunA17_Chr6g0463901 39.355 310 151 8 82 363 32 332 3.11e-65 211
Msa0559890 MtrunA17_Chr3g0113101 26.740 273 165 12 119 370 120 378 9.65e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559890 AT5G64380.1 72.222 360 73 4 40 377 50 404 0.0 516
Msa0559890 AT3G54050.2 44.860 321 141 7 79 364 96 415 9.69e-83 258
Msa0559890 AT3G54050.1 44.860 321 141 7 79 364 96 415 9.69e-83 258
Msa0559890 AT1G43670.1 40.063 317 157 8 82 372 32 341 1.46e-70 224
Msa0559890 AT3G55800.1 27.437 277 164 13 119 373 127 388 1.72e-14 74.7

Find 90 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCATTACCTTTGGCTC+TGG 0.272844 4_1:-59057460 Msa0559890:CDS
TCCCTATCAGAACCACTATT+TGG 0.303466 4_1:+59059009 None:intergenic
AGTCTTTGGTGCAGTTTAAC+TGG 0.327999 4_1:+59056484 None:intergenic
ATTCACTCCAAAGTGGAAAT+AGG 0.331263 4_1:-59057525 Msa0559890:CDS
CTCCATCGAACTTTGTTGTA+TGG 0.346740 4_1:-59056631 Msa0559890:CDS
TACCTTGCAGAGTACTTCTT+AGG 0.348324 4_1:+59056676 None:intergenic
GTAAAACCACTATCAGTCTT+AGG 0.354058 4_1:-59059219 Msa0559890:CDS
GTAGGTAAAGGAGGTGGAAT+TGG 0.362077 4_1:-59059132 Msa0559890:CDS
GGTTGGAAAGTTTGAAGCTT+TGG 0.362731 4_1:+59059291 None:intergenic
TTGATTGGCCTGAAGGCTTA+AGG 0.371460 4_1:-59056738 Msa0559890:intron
CTTGTTACTGAAGCCATTGT+TGG 0.385235 4_1:+59059243 None:intergenic
AATTGGTGTGAATGATGATT+TGG 0.387215 4_1:-59059115 Msa0559890:CDS
TTCACTCTCGACCGTTCAAC+AGG 0.404800 4_1:-59057427 Msa0559890:CDS
ATGGAAGAGTTGGAAAGTTA+TGG 0.406247 4_1:-59056433 Msa0559890:CDS
ACCATTGATATGCCAAATAG+TGG 0.413324 4_1:-59059021 Msa0559890:CDS
CTATCAGCCTATTTCCACTT+TGG 0.418294 4_1:+59057518 None:intergenic
AAAAGTAAATCCTGGTTATG+AGG 0.419122 4_1:-59056398 Msa0559890:CDS
GGATCTGTCACGACCACATA+TGG 0.420264 4_1:+59057661 None:intergenic
GAAGGTGATGAGTTGATAGA+AGG 0.422120 4_1:+59059317 None:intergenic
GATATAATATCAAGAGGCTT+TGG 0.431354 4_1:+59058982 None:intergenic
GGAAATAGGCTGATAGCTTC+TGG 0.433737 4_1:-59057511 Msa0559890:CDS
TCCATCGAACTTTGTTGTAT+GGG 0.439545 4_1:-59056630 Msa0559890:CDS
TGCCAAATAGTGGTTCTGAT+AGG 0.439936 4_1:-59059011 Msa0559890:CDS
AAAGCCTCTTGATATTATAT+CGG 0.440217 4_1:-59058980 Msa0559890:intron
ACTATACTCTGCATTACCTT+TGG 0.441406 4_1:-59057466 Msa0559890:CDS
TTTGGAAGACATGGAAGAGT+TGG 0.453917 4_1:-59056443 Msa0559890:CDS
CCATTGTTGGAGTGAAGAAA+AGG 0.457793 4_1:+59059256 None:intergenic
ATCTGGAAAAGTTGCTGTCA+TGG 0.460073 4_1:-59057728 Msa0559890:CDS
TCAACAGTAGCAAGTGATGA+TGG 0.462555 4_1:-59059177 Msa0559890:CDS
CCATCGAACTTTGTTGTATG+GGG 0.479077 4_1:-59056629 Msa0559890:CDS
ATTGATGCATCCATACCAAC+TGG 0.487257 4_1:-59057619 Msa0559890:CDS
CTTCATAAACAAGACGAAGA+TGG 0.490062 4_1:+59056584 None:intergenic
TCTGCATTACCTTTGGCTCT+GGG 0.492545 4_1:-59057459 Msa0559890:CDS
GAAAACATTCTGATGAAACT+TGG 0.497865 4_1:-59059380 Msa0559890:five_prime_UTR
GAAAATTGTACCAGTTGGTA+TGG 0.498000 4_1:+59057609 None:intergenic
GCCAAATAGTGGTTCTGATA+GGG 0.510565 4_1:-59059010 Msa0559890:CDS
GTGGAGCAAGCTGGTGGGAG+AGG 0.519722 4_1:-59056541 Msa0559890:CDS
AGTTTGAAGCTTTGGTCGGA+AGG 0.522108 4_1:+59059299 None:intergenic
TGATGGGTCTGTTACATTGA+TGG 0.523388 4_1:-59059160 Msa0559890:CDS
GAAGTACCTAAGACTGATAG+TGG 0.526082 4_1:+59059213 None:intergenic
ACCACTATTTGGCATATCAA+TGG 0.526712 4_1:+59059020 None:intergenic
TAATCTGCCCACAGAGGAGA+AGG 0.532639 4_1:-59057557 Msa0559890:CDS
TGCTCCACGATGAAACTAAG+AGG 0.534585 4_1:+59056556 None:intergenic
TTGATGGAGTATGTAGGTAA+AGG 0.537527 4_1:-59059144 Msa0559890:CDS
ATGGAGTATGTAGGTAAAGG+AGG 0.539783 4_1:-59059141 Msa0559890:CDS
AGCAAAGCCTTCTCCTCTGT+GGG 0.541176 4_1:+59057550 None:intergenic
GAGTATGTAGGTAAAGGAGG+TGG 0.541348 4_1:-59059138 Msa0559890:CDS
CCAACTTGGATAAGTGATGA+TGG 0.545731 4_1:-59057685 Msa0559890:CDS
CATTGTTGGAGTGAAGAAAA+GGG 0.551735 4_1:+59059257 None:intergenic
GTTGGAGTGAAGAAAAGGGT+TGG 0.561218 4_1:+59059261 None:intergenic
CGGTATTTATAAACGCCTTG+AGG 0.565322 4_1:-59057587 Msa0559890:CDS
AGTTTCATCGTGGAGCAAGC+TGG 0.566038 4_1:-59056550 Msa0559890:CDS
CCATCATCACTTATCCAAGT+TGG 0.566146 4_1:+59057685 None:intergenic
TTTAGGGAGTTTGGAAGACA+TGG 0.568162 4_1:-59056452 Msa0559890:CDS
AAGAAAATGATACACCAACT+TGG 0.571987 4_1:-59057699 Msa0559890:CDS
GGGGTGTGGCGATGAATCCG+AGG 0.573022 4_1:-59056609 Msa0559890:CDS
CAACAGTAGCAAGTGATGAT+GGG 0.579069 4_1:-59059176 Msa0559890:CDS
GATACTGTGAGACAAGGAAA+AGG 0.580838 4_1:-59056706 Msa0559890:CDS
TTGCTGAATTCACTCCAAAG+TGG 0.581831 4_1:-59057532 Msa0559890:CDS
GTTACATTGATGGAGTATGT+AGG 0.584657 4_1:-59059150 Msa0559890:CDS
CAGCAAAGCCTTCTCCTCTG+TGG 0.586371 4_1:+59057549 None:intergenic
TGCATGTGTCCCAGAGCCAA+AGG 0.587943 4_1:+59057450 None:intergenic
CCCCATACAACAAAGTTCGA+TGG 0.588449 4_1:+59056629 None:intergenic
ATATCAATGGTATAATTGAA+AGG 0.591706 4_1:+59059033 None:intergenic
TTCATCGTGGAGCAAGCTGG+TGG 0.592470 4_1:-59056547 Msa0559890:CDS
GGAAAGTTTGAAGCTTTGGT+CGG 0.593641 4_1:+59059295 None:intergenic
AAGGTGATGAGTTGATAGAA+GGG 0.593820 4_1:+59059318 None:intergenic
ATCCTAAGAAGTACTCTGCA+AGG 0.594963 4_1:-59056678 Msa0559890:CDS
GTCGTGACAGATCCCCTCGA+TGG 0.599505 4_1:-59057652 Msa0559890:CDS
ATACCGAAAATTGTACCAGT+TGG 0.603945 4_1:+59057604 None:intergenic
CATCGAACTTTGTTGTATGG+GGG 0.606647 4_1:-59056628 Msa0559890:CDS
TGCTACTGTTGATGAAGATG+AGG 0.607320 4_1:+59059188 None:intergenic
CACACCGATATAATATCAAG+AGG 0.613129 4_1:+59058976 None:intergenic
GGGTGTGGCGATGAATCCGA+GGG 0.615240 4_1:-59056608 Msa0559890:CDS
TAGCATCAAACCTCATAACC+AGG 0.619050 4_1:+59056388 None:intergenic
GCAGATTATCTAGCTCCTCA+AGG 0.619596 4_1:+59057572 None:intergenic
AATATTTCGAGAACCATCGA+GGG 0.619869 4_1:+59057639 None:intergenic
ACAAGACGAAGATGGTCCCT+CGG 0.621507 4_1:+59056592 None:intergenic
GCTCCACGATGAAACTAAGA+GGG 0.623232 4_1:+59056557 None:intergenic
GAATGAAGTCTCCTGTTGAA+CGG 0.631390 4_1:+59057416 None:intergenic
GCTGGTGGGAGAGGATCCGA+TGG 0.631525 4_1:-59056532 Msa0559890:CDS
AAGTGATGATGGTCCATATG+TGG 0.632479 4_1:-59057674 Msa0559890:CDS
TCATCGTGGAGCAAGCTGGT+GGG 0.634727 4_1:-59056546 Msa0559890:CDS
CAATATTTCGAGAACCATCG+AGG 0.656931 4_1:+59057638 None:intergenic
AGCATTAAAATTCCTCCCCG+TGG 0.680772 4_1:-59057382 Msa0559890:intron
TATATTGATACTGTGAGACA+AGG 0.681648 4_1:-59056712 Msa0559890:CDS
GCTAGATAATCTGCCCACAG+AGG 0.689544 4_1:-59057563 Msa0559890:CDS
GTGCATATGTTACCACGGGG+AGG 0.701876 4_1:+59057370 None:intergenic
ATATTTCGAGAACCATCGAG+GGG 0.721395 4_1:+59057640 None:intergenic
AAACCCTCTTAGTTTCATCG+TGG 0.730924 4_1:-59056560 Msa0559890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATACAATATTTTTATATT+TGG + chr4_1:59057358-59057377 None:intergenic 10.0%
!! TATAAAATATCTATCAAATT+AGG + chr4_1:59058511-59058530 None:intergenic 10.0%
!!! ATAAAAAACACTTTAAAAGT+CGG - chr4_1:59057166-59057185 Msa0559890:intron 15.0%
!! TTTCTATTAGGTTTAAATAT+CGG + chr4_1:59057455-59057474 None:intergenic 15.0%
!! ACATTAATGCTTATAATTTA+AGG - chr4_1:59058629-59058648 Msa0559890:intron 15.0%
!! TATAAAAATAAACTGAAAAC+AGG - chr4_1:59058827-59058846 Msa0559890:intron 15.0%
!!! GAATGTTTTCATTTTCATTT+GGG + chr4_1:59056417-59056436 None:intergenic 20.0%
!!! AGAATGTTTTCATTTTCATT+TGG + chr4_1:59056418-59056437 None:intergenic 20.0%
!! ATATCAATGGTATAATTGAA+AGG + chr4_1:59056777-59056796 None:intergenic 20.0%
!! AACTCAATATAGCATAAATT+AGG - chr4_1:59057142-59057161 Msa0559890:intron 20.0%
!! TTCTATTAGGTTTAAATATC+GGG + chr4_1:59057454-59057473 None:intergenic 20.0%
!!! TTCAAAATTTTGAGAATTGA+GGG - chr4_1:59057526-59057545 Msa0559890:CDS 20.0%
!! GTTCTATTAATGTTGTTAAA+TGG - chr4_1:59057806-59057825 Msa0559890:intron 20.0%
!! TAACAAAACCCTTTATTAAA+AGG - chr4_1:59057979-59057998 Msa0559890:intron 20.0%
!!! CTCTTTTTCCTTTTAATAAA+GGG + chr4_1:59057990-59058009 None:intergenic 20.0%
!!! TCTCTTTTTCCTTTTAATAA+AGG + chr4_1:59057991-59058010 None:intergenic 20.0%
!!! TTGATAATATAACAGAAGAT+AGG + chr4_1:59058537-59058556 None:intergenic 20.0%
!! TCTGTTATATTATCAAATGT+TGG - chr4_1:59058541-59058560 Msa0559890:intron 20.0%
!! TTAAGCTATTTATCAAGAAA+GGG + chr4_1:59058655-59058674 None:intergenic 20.0%
!!! TTTATTTTTATAAGCTCTTC+AGG + chr4_1:59058819-59058838 None:intergenic 20.0%
! AAAGCCTCTTGATATTATAT+CGG - chr4_1:59056827-59056846 Msa0559890:intron 25.0%
! AAAAAAATCATCCAAACTCA+TGG + chr4_1:59056877-59056896 None:intergenic 25.0%
!! TTTGTGTGTTGTTGTTAATT+GGG - chr4_1:59056946-59056965 Msa0559890:intron 25.0%
! TGTTAGAAAATAAGTCATCT+AGG - chr4_1:59057308-59057327 Msa0559890:intron 25.0%
! GTAAGTTATATGAAAACACA+AGG + chr4_1:59057487-59057506 None:intergenic 25.0%
!!! CTTCAAAATTTTGAGAATTG+AGG - chr4_1:59057525-59057544 Msa0559890:CDS 25.0%
!! TTACATTAATTTTCGATGAG+TGG + chr4_1:59057596-59057615 None:intergenic 25.0%
! TTCTACAACTTAGATATAAG+GGG + chr4_1:59057623-59057642 None:intergenic 25.0%
! GTTCTACAACTTAGATATAA+GGG + chr4_1:59057624-59057643 None:intergenic 25.0%
! TGTTCTACAACTTAGATATA+AGG + chr4_1:59057625-59057644 None:intergenic 25.0%
!! GTTTGTCATAATGGAAATAT+AGG + chr4_1:59057785-59057804 None:intergenic 25.0%
! AATAGAACAGTTTGTCATAA+TGG + chr4_1:59057794-59057813 None:intergenic 25.0%
!!! AATGTTGTTAAATGGATTGT+TGG - chr4_1:59057814-59057833 Msa0559890:intron 25.0%
!!! ATGTTGTTAAATGGATTGTT+GGG - chr4_1:59057815-59057834 Msa0559890:intron 25.0%
!! TTTTGATCTTATGTCAGAAT+TGG - chr4_1:59057845-59057864 Msa0559890:intron 25.0%
!!! TCAGTAATGGGTTTAAAAAT+AGG + chr4_1:59057872-59057891 None:intergenic 25.0%
!! TAAGGCTAATTTTCTTTCAT+TGG - chr4_1:59058576-59058595 Msa0559890:intron 25.0%
! GTTAAGCTATTTATCAAGAA+AGG + chr4_1:59058656-59058675 None:intergenic 25.0%
!!! ATGATGCAAGATATTTTGAT+TGG - chr4_1:59059054-59059073 Msa0559890:CDS 25.0%
GAAAACATTCTGATGAAACT+TGG - chr4_1:59056427-59056446 Msa0559890:CDS 30.0%
! AAGAAAAGGGTTGGAATTTT+TGG + chr4_1:59056540-59056559 None:intergenic 30.0%
AATTGGTGTGAATGATGATT+TGG - chr4_1:59056692-59056711 Msa0559890:CDS 30.0%
GATATAATATCAAGAGGCTT+TGG + chr4_1:59056828-59056847 None:intergenic 30.0%
TCTATTGAATTCCATGAGTT+TGG - chr4_1:59056863-59056882 Msa0559890:intron 30.0%
!! TTTTCCCTTTTTGATTGTCT+TGG - chr4_1:59056896-59056915 Msa0559890:intron 30.0%
CTAACCAAGACAATCAAAAA+GGG + chr4_1:59056903-59056922 None:intergenic 30.0%
ACTAACCAAGACAATCAAAA+AGG + chr4_1:59056904-59056923 None:intergenic 30.0%
! GTTTGTGTGTTGTTGTTAAT+TGG - chr4_1:59056945-59056964 Msa0559890:intron 30.0%
ATTGGGAATCATGACAAAAT+CGG - chr4_1:59056963-59056982 Msa0559890:intron 30.0%
AAATCGGTGGTTGAAAATAT+TGG - chr4_1:59056979-59056998 Msa0559890:intron 30.0%
AATCGGTGGTTGAAAATATT+GGG - chr4_1:59056980-59056999 Msa0559890:intron 30.0%
CTCTTAAGAAGAAGAATAAG+TGG - chr4_1:59057050-59057069 Msa0559890:intron 30.0%
TTGTTACAAAGGTAATTTGG+TGG + chr4_1:59057248-59057267 None:intergenic 30.0%
!! AGCTTGTTACAAAGGTAATT+TGG + chr4_1:59057251-59057270 None:intergenic 30.0%
AAATTACCTTTGTAACAAGC+TGG - chr4_1:59057250-59057269 Msa0559890:intron 30.0%
AGAAAATAAGTCATCTAGGT+CGG - chr4_1:59057312-59057331 Msa0559890:intron 30.0%
! AGGATGACTCATTTTCTATT+AGG + chr4_1:59057467-59057486 None:intergenic 30.0%
!! TCAAAATTTTGAAGACCCTT+GGG + chr4_1:59057519-59057538 None:intergenic 30.0%
CTCTAACATAAGAGTTTCTA+AGG + chr4_1:59057698-59057717 None:intergenic 30.0%
TAGTATGGTACATCAGTAAT+GGG + chr4_1:59057884-59057903 None:intergenic 30.0%
CTAGCCATTATGTATGTAAA+AGG - chr4_1:59057938-59057957 Msa0559890:intron 30.0%
! ACAGCCTTTTACATACATAA+TGG + chr4_1:59057945-59057964 None:intergenic 30.0%
TTTCATTCTGCAATAATGCA+TGG + chr4_1:59058037-59058056 None:intergenic 30.0%
TTGTCATCACTTCAAAAATC+TGG - chr4_1:59058062-59058081 Msa0559890:intron 30.0%
AAGAAAATGATACACCAACT+TGG - chr4_1:59058108-59058127 Msa0559890:intron 30.0%
! ATACCAACTGGTACAATTTT+CGG - chr4_1:59058200-59058219 Msa0559890:intron 30.0%
TTAAAGTGCATATGTTACCA+CGG + chr4_1:59058445-59058464 None:intergenic 30.0%
AATAAACTGAAAACAGGCTA+TGG - chr4_1:59058833-59058852 Msa0559890:intron 30.0%
TTTCCACTGAAAACAACTTA+TGG - chr4_1:59058870-59058889 Msa0559890:intron 30.0%
AAACTGTTTGGTTGAGTTTA+TGG + chr4_1:59058914-59058933 None:intergenic 30.0%
CAGTCAACAACATAAACTTA+GGG + chr4_1:59058995-59059014 None:intergenic 30.0%
ATATATTTCCTTAAGCCTTC+AGG + chr4_1:59059080-59059099 None:intergenic 30.0%
TATATTGATACTGTGAGACA+AGG - chr4_1:59059095-59059114 Msa0559890:CDS 30.0%
!!! AAGAATCCTACTTTTTCCAT+CGG + chr4_1:59059294-59059313 None:intergenic 30.0%
! AAAGACTTCCTCTCTTTTTA+GGG - chr4_1:59059339-59059358 Msa0559890:CDS 30.0%
GTACAACAAAAAGTAAATCC+TGG - chr4_1:59059401-59059420 Msa0559890:five_prime_UTR 30.0%
AAAAGTAAATCCTGGTTATG+AGG - chr4_1:59059409-59059428 Msa0559890:five_prime_UTR 30.0%
!! AAGGTGATGAGTTGATAGAA+GGG + chr4_1:59056492-59056511 None:intergenic 35.0%
!!! AAAGGGTTGGAATTTTTGGT+TGG + chr4_1:59056536-59056555 None:intergenic 35.0%
CATTGTTGGAGTGAAGAAAA+GGG + chr4_1:59056553-59056572 None:intergenic 35.0%
GTAAAACCACTATCAGTCTT+AGG - chr4_1:59056588-59056607 Msa0559890:CDS 35.0%
GTTACATTGATGGAGTATGT+AGG - chr4_1:59056657-59056676 Msa0559890:CDS 35.0%
TTGATGGAGTATGTAGGTAA+AGG - chr4_1:59056663-59056682 Msa0559890:CDS 35.0%
ACCATTGATATGCCAAATAG+TGG - chr4_1:59056786-59056805 Msa0559890:intron 35.0%
ACCACTATTTGGCATATCAA+TGG + chr4_1:59056790-59056809 None:intergenic 35.0%
CACACCGATATAATATCAAG+AGG + chr4_1:59056834-59056853 None:intergenic 35.0%
! TTTTTGTCAAGTAGCCACAA+TGG - chr4_1:59057018-59057037 Msa0559890:intron 35.0%
!! AAGAGAATTTCTAGCCATTG+TGG + chr4_1:59057035-59057054 None:intergenic 35.0%
TGGGTAGGAACATATATACA+GGG + chr4_1:59057098-59057117 None:intergenic 35.0%
!! ACAAAACCAGCTTGTTACAA+AGG + chr4_1:59057259-59057278 None:intergenic 35.0%
!! CAAAATTTTGAAGACCCTTG+GGG + chr4_1:59057518-59057537 None:intergenic 35.0%
!! CTCAAAATTTTGAAGACCCT+TGG + chr4_1:59057520-59057539 None:intergenic 35.0%
CTTATGTTAGAGTGTGTTGA+AGG - chr4_1:59057706-59057725 Msa0559890:CDS 35.0%
CTAGTATGGTACATCAGTAA+TGG + chr4_1:59057885-59057904 None:intergenic 35.0%
GTCAACATTCAAGACTAGTA+TGG + chr4_1:59057899-59057918 None:intergenic 35.0%
ATTCTGCAATAATGCATGGT+GGG + chr4_1:59058033-59058052 None:intergenic 35.0%
AATATTTCGAGAACCATCGA+GGG + chr4_1:59058171-59058190 None:intergenic 35.0%
! GAAAATTGTACCAGTTGGTA+TGG + chr4_1:59058201-59058220 None:intergenic 35.0%
ATACCGAAAATTGTACCAGT+TGG + chr4_1:59058206-59058225 None:intergenic 35.0%
ATTCACTCCAAAGTGGAAAT+AGG - chr4_1:59058282-59058301 Msa0559890:intron 35.0%
ACTATACTCTGCATTACCTT+TGG - chr4_1:59058341-59058360 Msa0559890:intron 35.0%
TAAAGTGCATATGTTACCAC+GGG + chr4_1:59058444-59058463 None:intergenic 35.0%
!! TGTTGGAAGCATCTTACATA+AGG - chr4_1:59058558-59058577 Msa0559890:intron 35.0%
!! AGTCCATAAGTTGTTTTCAG+TGG + chr4_1:59058876-59058895 None:intergenic 35.0%
TTGTGAGTTGTGAAACTGTT+TGG + chr4_1:59058926-59058945 None:intergenic 35.0%
CTCACAAATGTTCATGTCTA+CGG - chr4_1:59058939-59058958 Msa0559890:intron 35.0%
CATAAACTTAGGGACTGTAT+AGG + chr4_1:59058985-59059004 None:intergenic 35.0%
GCAGTCAACAACATAAACTT+AGG + chr4_1:59058996-59059015 None:intergenic 35.0%
!!! AGATATTTTGATTGGCCTGA+AGG - chr4_1:59059062-59059081 Msa0559890:CDS 35.0%
! TCCATCGAACTTTGTTGTAT+GGG - chr4_1:59059177-59059196 Msa0559890:CDS 35.0%
CTTCATAAACAAGACGAAGA+TGG + chr4_1:59059226-59059245 None:intergenic 35.0%
CTAAAAAGAGAGGAAGTCTT+TGG + chr4_1:59059340-59059359 None:intergenic 35.0%
! CAAAGACTTCCTCTCTTTTT+AGG - chr4_1:59059338-59059357 Msa0559890:CDS 35.0%
ATGGAAGAGTTGGAAAGTTA+TGG - chr4_1:59059374-59059393 Msa0559890:five_prime_UTR 35.0%
!! GAAGGTGATGAGTTGATAGA+AGG + chr4_1:59056493-59056512 None:intergenic 40.0%
! GGAAAGTTTGAAGCTTTGGT+CGG + chr4_1:59056515-59056534 None:intergenic 40.0%
! GGTTGGAAAGTTTGAAGCTT+TGG + chr4_1:59056519-59056538 None:intergenic 40.0%
CCATTGTTGGAGTGAAGAAA+AGG + chr4_1:59056554-59056573 None:intergenic 40.0%
! CCTTTTCTTCACTCCAACAA+TGG - chr4_1:59056551-59056570 Msa0559890:CDS 40.0%
CTTGTTACTGAAGCCATTGT+TGG + chr4_1:59056567-59056586 None:intergenic 40.0%
! GAAGTACCTAAGACTGATAG+TGG + chr4_1:59056597-59056616 None:intergenic 40.0%
! TGCTACTGTTGATGAAGATG+AGG + chr4_1:59056622-59056641 None:intergenic 40.0%
TCAACAGTAGCAAGTGATGA+TGG - chr4_1:59056630-59056649 Msa0559890:CDS 40.0%
CAACAGTAGCAAGTGATGAT+GGG - chr4_1:59056631-59056650 Msa0559890:CDS 40.0%
! TGATGGGTCTGTTACATTGA+TGG - chr4_1:59056647-59056666 Msa0559890:CDS 40.0%
ATGGAGTATGTAGGTAAAGG+AGG - chr4_1:59056666-59056685 Msa0559890:CDS 40.0%
!! TGCCAAATAGTGGTTCTGAT+AGG - chr4_1:59056796-59056815 Msa0559890:intron 40.0%
!! GCCAAATAGTGGTTCTGATA+GGG - chr4_1:59056797-59056816 Msa0559890:intron 40.0%
TCCCTATCAGAACCACTATT+TGG + chr4_1:59056801-59056820 None:intergenic 40.0%
AGAAGAATAAGTGGTGTGTC+AGG - chr4_1:59057059-59057078 Msa0559890:intron 40.0%
GAAGAATAAGTGGTGTGTCA+GGG - chr4_1:59057060-59057079 Msa0559890:intron 40.0%
GGGTAGGAACATATATACAG+GGG + chr4_1:59057097-59057116 None:intergenic 40.0%
GTGGGTAGGAACATATATAC+AGG + chr4_1:59057099-59057118 None:intergenic 40.0%
!!! ACAAGCTGGTTTTGTAGAGA+TGG - chr4_1:59057264-59057283 Msa0559890:intron 40.0%
!!! CAAGCTGGTTTTGTAGAGAT+GGG - chr4_1:59057265-59057284 Msa0559890:intron 40.0%
TGGCCTAATTCAACTCTACA+AGG + chr4_1:59057338-59057357 None:intergenic 40.0%
ACTTTGTTGGATGACTCGAA+TGG + chr4_1:59057392-59057411 None:intergenic 40.0%
AGTGACGAGTATCACTTTGT+TGG + chr4_1:59057405-59057424 None:intergenic 40.0%
ATACTCGTCACTCTACGAAT+TGG - chr4_1:59057413-59057432 Msa0559890:CDS 40.0%
AACTTACCAATTAAGCCCCA+AGG - chr4_1:59057500-59057519 Msa0559890:CDS 40.0%
ACTTACCAATTAAGCCCCAA+GGG - chr4_1:59057501-59057520 Msa0559890:CDS 40.0%
ACTGATGCACAGATAGAAAC+AGG + chr4_1:59057569-59057588 None:intergenic 40.0%
TTCTGCAATAATGCATGGTG+GGG + chr4_1:59058032-59058051 None:intergenic 40.0%
CATTCTGCAATAATGCATGG+TGG + chr4_1:59058034-59058053 None:intergenic 40.0%
ATCTGGAAAAGTTGCTGTCA+TGG - chr4_1:59058079-59058098 Msa0559890:intron 40.0%
CCATCATCACTTATCCAAGT+TGG + chr4_1:59058125-59058144 None:intergenic 40.0%
CCAACTTGGATAAGTGATGA+TGG - chr4_1:59058122-59058141 Msa0559890:intron 40.0%
!! AAGTGATGATGGTCCATATG+TGG - chr4_1:59058133-59058152 Msa0559890:intron 40.0%
ATATTTCGAGAACCATCGAG+GGG + chr4_1:59058170-59058189 None:intergenic 40.0%
CAATATTTCGAGAACCATCG+AGG + chr4_1:59058172-59058191 None:intergenic 40.0%
ATTGATGCATCCATACCAAC+TGG - chr4_1:59058188-59058207 Msa0559890:intron 40.0%
CGGTATTTATAAACGCCTTG+AGG - chr4_1:59058220-59058239 Msa0559890:intron 40.0%
TTGCTGAATTCACTCCAAAG+TGG - chr4_1:59058275-59058294 Msa0559890:intron 40.0%
CTATCAGCCTATTTCCACTT+TGG + chr4_1:59058292-59058311 None:intergenic 40.0%
GAATGAAGTCTCCTGTTGAA+CGG + chr4_1:59058394-59058413 None:intergenic 40.0%
AAAGTGCATATGTTACCACG+GGG + chr4_1:59058443-59058462 None:intergenic 40.0%
AACTTAGGGACTGTATAGGA+TGG + chr4_1:59058981-59059000 None:intergenic 40.0%
!!! CTCTCTTGTTTTGTCACTCA+GGG - chr4_1:59059015-59059034 Msa0559890:CDS 40.0%
GATACTGTGAGACAAGGAAA+AGG - chr4_1:59059101-59059120 Msa0559890:CDS 40.0%
!! ATCCTAAGAAGTACTCTGCA+AGG - chr4_1:59059129-59059148 Msa0559890:CDS 40.0%
! TACCTTGCAGAGTACTTCTT+AGG + chr4_1:59059134-59059153 None:intergenic 40.0%
! CTCCATCGAACTTTGTTGTA+TGG - chr4_1:59059176-59059195 Msa0559890:CDS 40.0%
! CCATCGAACTTTGTTGTATG+GGG - chr4_1:59059178-59059197 Msa0559890:CDS 40.0%
! CATCGAACTTTGTTGTATGG+GGG - chr4_1:59059179-59059198 Msa0559890:CDS 40.0%
AAACCCTCTTAGTTTCATCG+TGG - chr4_1:59059247-59059266 Msa0559890:CDS 40.0%
! AGTCTTTGGTGCAGTTTAAC+TGG + chr4_1:59059326-59059345 None:intergenic 40.0%
!! TCCTCTCTTTTTAGGGAGTT+TGG - chr4_1:59059346-59059365 Msa0559890:exon 40.0%
TCCAAACTCCCTAAAAAGAG+AGG + chr4_1:59059350-59059369 None:intergenic 40.0%
TTTAGGGAGTTTGGAAGACA+TGG - chr4_1:59059355-59059374 Msa0559890:exon 40.0%
TTTGGAAGACATGGAAGAGT+TGG - chr4_1:59059364-59059383 Msa0559890:exon 40.0%
! AGTTTGAAGCTTTGGTCGGA+AGG + chr4_1:59056511-59056530 None:intergenic 45.0%
GTTGGAGTGAAGAAAAGGGT+TGG + chr4_1:59056549-59056568 None:intergenic 45.0%
GAGTATGTAGGTAAAGGAGG+TGG - chr4_1:59056669-59056688 Msa0559890:CDS 45.0%
GTAGGTAAAGGAGGTGGAAT+TGG - chr4_1:59056675-59056694 Msa0559890:CDS 45.0%
GGGAATCATGACAAAATCGG+TGG - chr4_1:59056966-59056985 Msa0559890:intron 45.0%
! CGGCCTTGTAGAGTTGAATT+AGG - chr4_1:59057332-59057351 Msa0559890:intron 45.0%
CGTCACTCTACGAATTGGTT+TGG - chr4_1:59057418-59057437 Msa0559890:CDS 45.0%
! GCAGATTATCTAGCTCCTCA+AGG + chr4_1:59058238-59058257 None:intergenic 45.0%
GGAAATAGGCTGATAGCTTC+TGG - chr4_1:59058296-59058315 Msa0559890:intron 45.0%
!! TCTGCATTACCTTTGGCTCT+GGG - chr4_1:59058348-59058367 Msa0559890:intron 45.0%
!! CGGGGAGGAATTTTAATGCT+TGG + chr4_1:59058425-59058444 None:intergenic 45.0%
AGCATTAAAATTCCTCCCCG+TGG - chr4_1:59058425-59058444 Msa0559890:intron 45.0%
!!! GCTCTCTTGTTTTGTCACTC+AGG - chr4_1:59059014-59059033 Msa0559890:CDS 45.0%
!! TTGATTGGCCTGAAGGCTTA+AGG - chr4_1:59059069-59059088 Msa0559890:CDS 45.0%
CCCCATACAACAAAGTTCGA+TGG + chr4_1:59059181-59059200 None:intergenic 45.0%
! AACTTTGTTGTATGGGGGTG+TGG - chr4_1:59059184-59059203 Msa0559890:CDS 45.0%
GCTCCACGATGAAACTAAGA+GGG + chr4_1:59059253-59059272 None:intergenic 45.0%
TGCTCCACGATGAAACTAAG+AGG + chr4_1:59059254-59059273 None:intergenic 45.0%
GAGGATCCGATGGAAAAAGT+AGG - chr4_1:59059285-59059304 Msa0559890:CDS 45.0%
TACCCACTGAGCTAAGCTCA+CGG - chr4_1:59057112-59057131 Msa0559890:intron 50.0%
GAAGACCCTTGGGGCTTAAT+TGG + chr4_1:59057509-59057528 None:intergenic 50.0%
GGATCTGTCACGACCACATA+TGG + chr4_1:59058149-59058168 None:intergenic 50.0%
GCTAGATAATCTGCCCACAG+AGG - chr4_1:59058244-59058263 Msa0559890:intron 50.0%
TAATCTGCCCACAGAGGAGA+AGG - chr4_1:59058250-59058269 Msa0559890:intron 50.0%
AGCAAAGCCTTCTCCTCTGT+GGG + chr4_1:59058260-59058279 None:intergenic 50.0%
! CTCTGCATTACCTTTGGCTC+TGG - chr4_1:59058347-59058366 Msa0559890:intron 50.0%
TTCACTCTCGACCGTTCAAC+AGG - chr4_1:59058380-59058399 Msa0559890:intron 50.0%
ACAAGACGAAGATGGTCCCT+CGG + chr4_1:59059218-59059237 None:intergenic 50.0%
AGTTTCATCGTGGAGCAAGC+TGG - chr4_1:59059257-59059276 Msa0559890:CDS 50.0%
GGTGTGTCAGGGTTCGAACT+CGG - chr4_1:59057071-59057090 Msa0559890:intron 55.0%
GTGAGCTTAGCTCAGTGGGT+AGG + chr4_1:59057113-59057132 None:intergenic 55.0%
ACCCACTGAGCTAAGCTCAC+GGG - chr4_1:59057113-59057132 Msa0559890:intron 55.0%
CAGCAAAGCCTTCTCCTCTG+TGG + chr4_1:59058261-59058280 None:intergenic 55.0%
TGCATGTGTCCCAGAGCCAA+AGG + chr4_1:59058360-59058379 None:intergenic 55.0%
GTGCATATGTTACCACGGGG+AGG + chr4_1:59058440-59058459 None:intergenic 55.0%
TTCATCGTGGAGCAAGCTGG+TGG - chr4_1:59059260-59059279 Msa0559890:CDS 55.0%
TCATCGTGGAGCAAGCTGGT+GGG - chr4_1:59059261-59059280 Msa0559890:CDS 55.0%
CCCCGTGAGCTTAGCTCAGT+GGG + chr4_1:59057117-59057136 None:intergenic 60.0%
CCCACTGAGCTAAGCTCACG+GGG - chr4_1:59057114-59057133 Msa0559890:intron 60.0%
TCCCCGTGAGCTTAGCTCAG+TGG + chr4_1:59057118-59057137 None:intergenic 60.0%
GTCGTGACAGATCCCCTCGA+TGG - chr4_1:59058155-59058174 Msa0559890:intron 60.0%
GGGTGTGGCGATGAATCCGA+GGG - chr4_1:59059199-59059218 Msa0559890:CDS 60.0%
GGGGTGTGGCGATGAATCCG+AGG - chr4_1:59059198-59059217 Msa0559890:CDS 65.0%
GTGGAGCAAGCTGGTGGGAG+AGG - chr4_1:59059266-59059285 Msa0559890:CDS 65.0%
GCTGGTGGGAGAGGATCCGA+TGG - chr4_1:59059275-59059294 Msa0559890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59056393 59059436 59056393 ID=Msa0559890;Name=Msa0559890
chr4_1 mRNA 59056393 59059436 59056393 ID=Msa0559890-mRNA-1;Parent=Msa0559890;Name=Msa0559890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=72|0.5|0.66|1|1|1|3|0|377
chr4_1 exon 59056393 59056745 59056393 ID=Msa0559890-mRNA-1:exon:18163;Parent=Msa0559890-mRNA-1
chr4_1 exon 59057383 59057779 59057383 ID=Msa0559890-mRNA-1:exon:18162;Parent=Msa0559890-mRNA-1
chr4_1 exon 59058981 59059436 59058981 ID=Msa0559890-mRNA-1:exon:18161;Parent=Msa0559890-mRNA-1
chr4_1 five_prime_UTR 59059365 59059436 59059365 ID=Msa0559890-mRNA-1:five_prime_utr;Parent=Msa0559890-mRNA-1
chr4_1 CDS 59058981 59059364 59058981 ID=Msa0559890-mRNA-1:cds;Parent=Msa0559890-mRNA-1
chr4_1 CDS 59057383 59057779 59057383 ID=Msa0559890-mRNA-1:cds;Parent=Msa0559890-mRNA-1
chr4_1 CDS 59056393 59056745 59056393 ID=Msa0559890-mRNA-1:cds;Parent=Msa0559890-mRNA-1
Gene Sequence

>Msa0559890

ATGCAGTCAGCAGCAGCAACAACACCCTTCTATCAACTCATCACCTTCCGACCAAAGCTTCAAACTTTCCAACCAAAAATTCCAACCCTTTTCTTCACTCCAACAATGGCTTCAGTAACAAGAGTAAAACCACTATCAGTCTTAGGTACTTCTTCCTCATCTTCATCAACAGTAGCAAGTGATGATGGGTCTGTTACATTGATGGAGTATGTAGGTAAAGGAGGTGGAATTGGTGTGAATGATGATTTGGTGATTTTGATTGATCATATACAGTATGCTTGTAAGAGAATTGCAGCTCTTATAGCTTCTCCTTTCAATTATACCATTGATATGCCAAATAGTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTATATCGAATGAAATTATCTTGTCATCACTTCAAAAATCTGGAAAAGTTGCTGTCATGGCTTCTGAAGAAAATGATACACCAACTTGGATAAGTGATGATGGTCCATATGTGGTCGTGACAGATCCCCTCGATGGTTCTCGAAATATTGATGCATCCATACCAACTGGTACAATTTTCGGTATTTATAAACGCCTTGAGGAGCTAGATAATCTGCCCACAGAGGAGAAGGCTTTGCTGAATTCACTCCAAAGTGGAAATAGGCTGATAGCTTCTGGTTATGTTCTTTATTCATCTGCAACTATACTCTGCATTACCTTTGGCTCTGGGACACATGCATTCACTCTCGACCGTTCAACAGGAGACTTCATTCTGACAAATCCAAGCATTAAAATTCCTCCCCGTGGCTTAAGGAAATATATTGATACTGTGAGACAAGGAAAAGGTAGATATCCTAAGAAGTACTCTGCAAGGTATATATGCTCTCTAGTAGCTGATCTCCATCGAACTTTGTTGTATGGGGGTGTGGCGATGAATCCGAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATCGTGGAGCAAGCTGGTGGGAGAGGATCCGATGGAAAAAGTAGGATTCTTTCTCTTCAACCAGTTAAACTGCACCAAAGACTTCCTCTCTTTTTAGGGAGTTTGGAAGACATGGAAGAGTTGGAAAGTTATGGAGACGTACAACAAAAAGTAAATCCTGGTTATGAGGTTTGA

Protein sequence

>Msa0559890

MQSAAATTPFYQLITFRPKLQTFQPKIPTLFFTPTMASVTRVKPLSVLGTSSSSSSTVASDDGSVTLMEYVGKGGGIGVNDDLVILIDHIQYACKRIAALIASPFNYTIDMPNSGSDRDAPKPLDIISNEIILSSLQKSGKVAVMASEENDTPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDNLPTEEKALLNSLQSGNRLIASGYVLYSSATILCITFGSGTHAFTLDRSTGDFILTNPSIKIPPRGLRKYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKSRILSLQPVKLHQRLPLFLGSLEDMEELESYGDVQQKVNPGYEV*