AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092920 MtrunA17_Chr3g0135991 94.134 358 8 1 1 345 1 358 0.0 696
Msa0092920 MtrunA17_Chr1g0186361 26.609 233 153 5 81 296 576 807 5.17e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092920 AT4G33110.1 68.732 355 98 1 4 345 1 355 0.0 532
Msa0092920 AT4G33110.2 68.732 355 98 1 4 345 1 355 0.0 532
Msa0092920 AT4G33120.1 65.915 355 108 1 4 345 1 355 0.0 511
Msa0092920 AT3G23510.1 25.296 253 168 6 81 316 577 825 7.97e-14 73.2
Msa0092920 AT3G23530.1 24.901 253 169 6 81 316 577 825 1.37e-13 72.4
Msa0092920 AT3G23470.3 26.596 188 124 3 81 254 196 383 1.71e-13 71.6
Msa0092920 AT3G23470.2 26.596 188 124 3 81 254 196 383 1.71e-13 71.6
Msa0092920 AT3G23470.1 26.596 188 124 3 81 254 169 356 1.79e-13 71.6

Find 80 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATGTTGATTCCATAAT+TGG 0.122160 1_2:-75699674 None:intergenic
AATTCGTAATGTTGAGATTT+TGG 0.142343 1_2:-75697692 None:intergenic
GAACTGTATGACCATCTTTC+AGG 0.193403 1_2:-75698483 None:intergenic
TCTTTCTTTAAGCTGGTTCT+TGG 0.257853 1_2:+75697722 Msa0092920:CDS
ATAGCTGTAGCAGAACTATT+TGG 0.260405 1_2:+75699743 Msa0092920:CDS
GTCAACCATTGGCTGGTAAA+TGG 0.264020 1_2:+75699466 Msa0092920:CDS
CTTGATTTGAGAATTGATTC+AGG 0.280867 1_2:+75699841 Msa0092920:three_prime_UTR
TCTAACCTCAAACATTTCTA+TGG 0.304284 1_2:-75698878 None:intergenic
AATCAAGAGAAGAATGGTTT+TGG 0.307104 1_2:-75699825 None:intergenic
ACGTGTGTGTCTTTGTTTAT+TGG 0.307858 1_2:+75697293 Msa0092920:five_prime_UTR
ACAGTCAGTTCCAGGGTTAC+AGG 0.313587 1_2:+75698557 Msa0092920:intron
GACTTCCATCAAGCCAATTA+TGG 0.317037 1_2:+75699661 Msa0092920:CDS
CAAGAATTACAGTCAGTTCC+AGG 0.329562 1_2:+75698549 Msa0092920:intron
ATTACAAGATACTTCTTTAC+CGG 0.330934 1_2:+75699246 Msa0092920:CDS
AGAAATGATGAACGAATAAA+AGG 0.335415 1_2:-75699029 None:intergenic
AGTCTCCTGATGACGGCATC+AGG 0.366796 1_2:-75697454 None:intergenic
TCAACCATTGGCTGGTAAAT+GGG 0.399932 1_2:+75699467 Msa0092920:CDS
AGAAAGTACAGTGAGCAAAT+TGG 0.401458 1_2:-75697552 None:intergenic
ACCTACCTCTTTCTTTAAGC+TGG 0.401709 1_2:+75697715 Msa0092920:CDS
AGCCTCTTCCAATGTCTTTG+AGG 0.408387 1_2:-75698422 None:intergenic
TGTCAACTACGACGGCCATT+TGG 0.412090 1_2:-75700012 None:intergenic
TGCTCCCTGATGCCGTCATC+AGG 0.412465 1_2:+75697449 Msa0092920:CDS
GAACTATTTGGATACAATAA+TGG 0.412686 1_2:+75699755 Msa0092920:CDS
TGATTCCATAATTGGCTTGA+TGG 0.414616 1_2:-75699666 None:intergenic
ACATCAGTACTGACAGCAAT+AGG 0.445899 1_2:-75697668 None:intergenic
CTACCAAATGGACTGTCTAC+TGG 0.453211 1_2:+75699708 Msa0092920:CDS
AGACATTAGTACATTTGAAA+TGG 0.457001 1_2:+75698831 Msa0092920:CDS
CCAATTATGGAATCAACATA+TGG 0.460490 1_2:+75699674 Msa0092920:CDS
AGCTTCACGGTGGTGTTGTA+AGG 0.461791 1_2:-75697400 None:intergenic
ATTGCAGATTCCTGTAACCC+TGG 0.462607 1_2:-75698567 None:intergenic
CGAAGAGTGGCTCAAAAGAA+TGG 0.463992 1_2:+75699628 Msa0092920:CDS
GCCATCCACTTTCATCCAGT+TGG 0.469157 1_2:-75699007 None:intergenic
CTCTTCTGCCTCAAAGACAT+TGG 0.471861 1_2:+75698414 Msa0092920:CDS
AAGTGTGGTGTGGTAGTTGA+TGG 0.474442 1_2:+75697351 Msa0092920:exon
TGCTGCAGGCATAGTTCCTC+CGG 0.476336 1_2:-75699265 None:intergenic
AGCATTTGCCTACCACTTTG+AGG 0.477976 1_2:+75699059 Msa0092920:CDS
TTCTCAAGAAGATATCCAAC+TGG 0.482343 1_2:+75698992 Msa0092920:CDS
AAGAACCAGCTTAAAGAAAG+AGG 0.482405 1_2:-75697720 None:intergenic
GCAAAGATTCAGCTACCAAA+TGG 0.488606 1_2:+75699696 Msa0092920:CDS
GAAAGCTGAAGTTCAGAAGA+AGG 0.489672 1_2:-75697520 None:intergenic
TGTGACTTGTTCTGTTCTTG+TGG 0.492519 1_2:-75697319 None:intergenic
TTCTCAAATCAAGAGAAGAA+TGG 0.496199 1_2:-75699831 None:intergenic
TCTCCAGTAGACAGTCCATT+TGG 0.500310 1_2:-75699711 None:intergenic
TTGGAAACAACCTCAAATAC+AGG 0.508399 1_2:+75697741 Msa0092920:CDS
CTACGACGGCCATTTGGCAT+TGG 0.511496 1_2:-75700006 None:intergenic
ACAGTTCTTGATGTCGGATG+CGG 0.517068 1_2:+75698499 Msa0092920:CDS
AGAGTTCACTACCGGGGCAT+AGG 0.525860 1_2:-75700116 None:intergenic
GATACAATAATGGTGAAGAA+TGG 0.527408 1_2:+75699765 Msa0092920:CDS
ACCACCGTGAAGCTGATGCT+TGG 0.540117 1_2:+75697409 Msa0092920:CDS
TGCCTCAAAGACATTGGAAG+AGG 0.542100 1_2:+75698420 Msa0092920:CDS
TGAACCAAGCATCAGCTTCA+CGG 0.542958 1_2:-75697413 None:intergenic
GTTTCCCATTTACCAGCCAA+TGG 0.543039 1_2:-75699471 None:intergenic
GATATCCAACTGGATGAAAG+TGG 0.544699 1_2:+75699002 Msa0092920:CDS
GAAAACAGACCAATGCCAAA+TGG 0.548848 1_2:+75699997 Msa0092920:three_prime_UTR
GTGGTAGTTGATGGAAAAGA+TGG 0.551164 1_2:+75697360 Msa0092920:exon
AGTGGTAGGCAAATGCTTTG+TGG 0.556397 1_2:-75699053 None:intergenic
CAATAATGGTGAAGAATGGA+TGG 0.562198 1_2:+75699769 Msa0092920:CDS
GCCGTCGTAGTTGACACAAA+AGG 0.564039 1_2:+75700019 Msa0092920:three_prime_UTR
ATCAGAGTGATATCTTCACT+TGG 0.565437 1_2:+75699975 Msa0092920:three_prime_UTR
AAGAATTACAGTCAGTTCCA+GGG 0.566533 1_2:+75698550 Msa0092920:intron
ATGTTACTGTTGTCAACCAT+TGG 0.570038 1_2:+75699455 Msa0092920:CDS
TAAAGAAGTAGATTTGCTGC+AGG 0.572831 1_2:-75699279 None:intergenic
TACTGTTGTCAACCATTGGC+TGG 0.579302 1_2:+75699459 Msa0092920:CDS
GAAGTTTACCTCAAAGTGGT+AGG 0.587833 1_2:-75699067 None:intergenic
GAGAGATCAAACCTGAAAGA+TGG 0.590354 1_2:+75698472 Msa0092920:CDS
GGTCATACAGTTCTTGATGT+CGG 0.592044 1_2:+75698493 Msa0092920:CDS
GGAAACACTACGCACAAACC+AGG 0.597454 1_2:+75699488 Msa0092920:CDS
ATCAAGAACAGCCTATGCCC+CGG 0.604780 1_2:+75700105 Msa0092920:three_prime_UTR
GGAGCTGCAGCTGCAAAATG+TGG 0.607827 1_2:+75698795 Msa0092920:CDS
ACCAGCTTAAAGAAAGAGGT+AGG 0.613974 1_2:-75697716 None:intergenic
ACGTGTGAGTCTCCTGATGA+CGG 0.614974 1_2:-75697461 None:intergenic
TCCAACTGGATGAAAGTGGA+TGG 0.617956 1_2:+75699006 Msa0092920:CDS
ATATGAAGTTTACCTCAAAG+TGG 0.632893 1_2:-75699071 None:intergenic
GTCTCCTGATGACGGCATCA+GGG 0.634408 1_2:-75697453 None:intergenic
ACAAGATACTTCTTTACCGG+AGG 0.634907 1_2:+75699249 Msa0092920:CDS
GTCACAGAAGTCAAGAAGTG+TGG 0.656919 1_2:+75697336 Msa0092920:five_prime_UTR
AAAGACACACACGTACGTTG+TGG 0.660038 1_2:-75697284 None:intergenic
AGAAGTCAAGAAGTGTGGTG+TGG 0.696584 1_2:+75697341 Msa0092920:five_prime_UTR
AAGGCTTGTAAGAAGAACGA+AGG 0.696633 1_2:-75697501 None:intergenic
ACCAAGCATCAGCTTCACGG+TGG 0.763639 1_2:-75697410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAGTAAAAAGATA+AGG + chr1_2:75697242-75697261 Msa0092920:five_prime_UTR 10.0%
!! TGTTCTATATATAACAAAAT+CGG - chr1_2:75697578-75697597 None:intergenic 15.0%
!!! TATAAGTTATTTCTATACAA+GGG + chr1_2:75697978-75697997 Msa0092920:intron 15.0%
!! TTAAATTGTTTATCCAAACA+CGG - chr1_2:75697917-75697936 None:intergenic 20.0%
!!! GTATAAGTTATTTCTATACA+AGG + chr1_2:75697977-75697996 Msa0092920:intron 20.0%
!!! AATCATTTTACATCGTATTA+AGG - chr1_2:75698269-75698288 None:intergenic 20.0%
!! TGAACATTACATAAATCATA+AGG - chr1_2:75698361-75698380 None:intergenic 20.0%
!! TACAATATCAAGAAATATAC+CGG - chr1_2:75698628-75698647 None:intergenic 20.0%
!! TATCACTCTGATAAAAAAAT+AGG - chr1_2:75699967-75699986 None:intergenic 20.0%
!!! GAATAAATTTCATTTTAGTG+TGG + chr1_2:75700047-75700066 Msa0092920:three_prime_UTR 20.0%
!! ATTCGTAATGTTGAGATTTT+GGG - chr1_2:75697694-75697713 None:intergenic 25.0%
!! AATTCGTAATGTTGAGATTT+TGG - chr1_2:75697695-75697714 None:intergenic 25.0%
! CTTAAAAATACCTGTATTTG+AGG - chr1_2:75697754-75697773 None:intergenic 25.0%
! CTTATACAATAAGCTGAAAA+CGG + chr1_2:75698065-75698084 Msa0092920:intron 25.0%
!! GATTTATTTGAGTTTATCCA+CGG - chr1_2:75698154-75698173 None:intergenic 25.0%
! CTCAAATAAATCAAGTCAAA+CGG + chr1_2:75698162-75698181 Msa0092920:intron 25.0%
! GATGTAAAATGATTGTTTCA+TGG + chr1_2:75698275-75698294 Msa0092920:intron 25.0%
! ATGTTCATATTTGTATGAAC+TGG + chr1_2:75698374-75698393 Msa0092920:intron 25.0%
! AGACATTAGTACATTTGAAA+TGG + chr1_2:75698831-75698850 Msa0092920:CDS 25.0%
!! ATTTTCCATAGAAATGTTTG+AGG + chr1_2:75698873-75698892 Msa0092920:CDS 25.0%
! AGAAATGATGAACGAATAAA+AGG - chr1_2:75699032-75699051 None:intergenic 25.0%
!!! CAATTAGTCTTATTAGGTAT+TGG - chr1_2:75699150-75699169 None:intergenic 25.0%
!!! AGAACTCAATTAGTCTTATT+AGG - chr1_2:75699156-75699175 None:intergenic 25.0%
! ATTACAAGATACTTCTTTAC+CGG + chr1_2:75699246-75699265 Msa0092920:CDS 25.0%
! GCTTTACACAACAAAATTAT+CGG - chr1_2:75699372-75699391 None:intergenic 25.0%
! AGAATCATGACGAAATATAA+AGG - chr1_2:75699394-75699413 None:intergenic 25.0%
! TCACTTGTAATTGAATTCTT+TGG + chr1_2:75699416-75699435 Msa0092920:intron 25.0%
! TCTATCCATAGTTTACTATT+TGG + chr1_2:75699551-75699570 Msa0092920:intron 25.0%
! GAACTATTTGGATACAATAA+TGG + chr1_2:75699755-75699774 Msa0092920:CDS 25.0%
!!! AAATTTCATTTTAGTGTGGT+TGG + chr1_2:75700051-75700070 Msa0092920:three_prime_UTR 25.0%
! ATCTAAGAACTGATTCATCA+AGG + chr1_2:75697803-75697822 Msa0092920:intron 30.0%
! TCTAAGAACTGATTCATCAA+GGG + chr1_2:75697804-75697823 Msa0092920:intron 30.0%
TATATTACTAAGACCGTGTT+TGG + chr1_2:75697901-75697920 Msa0092920:intron 30.0%
AATAAGCTGAAAACGGTTTA+TGG + chr1_2:75698072-75698091 Msa0092920:intron 30.0%
ACTATCTTTAACGAATATGG+TGG + chr1_2:75698185-75698204 Msa0092920:intron 30.0%
!!! AATAAAAGCTTTTTGAGTCG+TGG - chr1_2:75698594-75698613 None:intergenic 30.0%
! GACTCAAAAAGCTTTTATTG+AGG + chr1_2:75698595-75698614 Msa0092920:CDS 30.0%
AAACTATATGACATGCACAA+TGG - chr1_2:75698664-75698683 None:intergenic 30.0%
! ATGATTTGCAAGACAAGTAT+TGG - chr1_2:75698727-75698746 None:intergenic 30.0%
TCTAACCTCAAACATTTCTA+TGG - chr1_2:75698881-75698900 None:intergenic 30.0%
!! ATGTTTGAGGTTAGATTTTG+TGG + chr1_2:75698886-75698905 Msa0092920:intron 30.0%
!! TGTTTGAGGTTAGATTTTGT+GGG + chr1_2:75698887-75698906 Msa0092920:intron 30.0%
ATATGAAGTTTACCTCAAAG+TGG - chr1_2:75699074-75699093 None:intergenic 30.0%
! TACTTGCTACTTATACATGT+AGG + chr1_2:75699203-75699222 Msa0092920:intron 30.0%
AGGACAAAAATGAAGATGAT+TGG + chr1_2:75699223-75699242 Msa0092920:intron 30.0%
CAACATAATTCAAGCTTACT+TGG - chr1_2:75699308-75699327 None:intergenic 30.0%
CGTTACCAAATAGTAAACTA+TGG - chr1_2:75699559-75699578 None:intergenic 30.0%
!! CCATATGTTGATTCCATAAT+TGG - chr1_2:75699677-75699696 None:intergenic 30.0%
CCAATTATGGAATCAACATA+TGG + chr1_2:75699674-75699693 Msa0092920:CDS 30.0%
GATACAATAATGGTGAAGAA+TGG + chr1_2:75699765-75699784 Msa0092920:CDS 30.0%
! AATCAAGAGAAGAATGGTTT+TGG - chr1_2:75699828-75699847 None:intergenic 30.0%
TTCTCAAATCAAGAGAAGAA+TGG - chr1_2:75699834-75699853 None:intergenic 30.0%
! CTTGATTTGAGAATTGATTC+AGG + chr1_2:75699841-75699860 Msa0092920:three_prime_UTR 30.0%
AAAACAAAAACTGTTCAACG+AGG + chr1_2:75699876-75699895 Msa0092920:three_prime_UTR 30.0%
ACTCTGATAAAAAAATAGGC+AGG - chr1_2:75699963-75699982 None:intergenic 30.0%
! ACGTGTGTGTCTTTGTTTAT+TGG + chr1_2:75697293-75697312 Msa0092920:five_prime_UTR 35.0%
! AGAAAGTACAGTGAGCAAAT+TGG - chr1_2:75697555-75697574 None:intergenic 35.0%
AAGAACCAGCTTAAAGAAAG+AGG - chr1_2:75697723-75697742 None:intergenic 35.0%
! TCTTTCTTTAAGCTGGTTCT+TGG + chr1_2:75697722-75697741 Msa0092920:CDS 35.0%
TTGGAAACAACCTCAAATAC+AGG + chr1_2:75697741-75697760 Msa0092920:CDS 35.0%
TGCAGTTAAGCTATACACAA+AGG - chr1_2:75697867-75697886 None:intergenic 35.0%
TGTGTATAGCTTAACTGCAT+TGG + chr1_2:75697868-75697887 Msa0092920:intron 35.0%
GTGTATAGCTTAACTGCATT+GGG + chr1_2:75697869-75697888 Msa0092920:intron 35.0%
AAAACACCTGTGAGACTATT+AGG - chr1_2:75698128-75698147 None:intergenic 35.0%
CGGACTATCTTTAACGAATA+TGG + chr1_2:75698182-75698201 Msa0092920:intron 35.0%
TCTTTAACGAATATGGTGGT+AGG + chr1_2:75698189-75698208 Msa0092920:intron 35.0%
CTTTAACGAATATGGTGGTA+GGG + chr1_2:75698190-75698209 Msa0092920:intron 35.0%
AAGAATTACAGTCAGTTCCA+GGG + chr1_2:75698550-75698569 Msa0092920:intron 35.0%
! CTTTTATTGAGGAGAAATGC+CGG + chr1_2:75698606-75698625 Msa0092920:CDS 35.0%
TTCTCAAGAAGATATCCAAC+TGG + chr1_2:75698992-75699011 Msa0092920:CDS 35.0%
CAAACTGAGATAGTCAACTA+AGG - chr1_2:75699101-75699120 None:intergenic 35.0%
!! TAAAGAAGTAGATTTGCTGC+AGG - chr1_2:75699282-75699301 None:intergenic 35.0%
GGTACTACTGCAATACTATT+GGG - chr1_2:75699351-75699370 None:intergenic 35.0%
!! AATTCTTTGGTGATGTGTGA+AGG + chr1_2:75699429-75699448 Msa0092920:intron 35.0%
ATGTTACTGTTGTCAACCAT+TGG + chr1_2:75699455-75699474 Msa0092920:CDS 35.0%
GTTGGAATATGCTGAATTGT+TGG + chr1_2:75699510-75699529 Msa0092920:intron 35.0%
!!! ATTTATTTTGCAGCGAAGAG+TGG + chr1_2:75699615-75699634 Msa0092920:intron 35.0%
!! TGATTCCATAATTGGCTTGA+TGG - chr1_2:75699669-75699688 None:intergenic 35.0%
ATAGCTGTAGCAGAACTATT+TGG + chr1_2:75699743-75699762 Msa0092920:CDS 35.0%
CAATAATGGTGAAGAATGGA+TGG + chr1_2:75699769-75699788 Msa0092920:CDS 35.0%
ATCAGAGTGATATCTTCACT+TGG + chr1_2:75699975-75699994 Msa0092920:three_prime_UTR 35.0%
!!! CGTTGTGGTAGTCTTGTTTT+CGG - chr1_2:75697272-75697291 None:intergenic 40.0%
!! TGTGACTTGTTCTGTTCTTG+TGG - chr1_2:75697322-75697341 None:intergenic 40.0%
!! GTGGTAGTTGATGGAAAAGA+TGG + chr1_2:75697360-75697379 Msa0092920:exon 40.0%
AAGGCTTGTAAGAAGAACGA+AGG - chr1_2:75697504-75697523 None:intergenic 40.0%
GAAAGCTGAAGTTCAGAAGA+AGG - chr1_2:75697523-75697542 None:intergenic 40.0%
!! ACATCAGTACTGACAGCAAT+AGG - chr1_2:75697671-75697690 None:intergenic 40.0%
ACCTACCTCTTTCTTTAAGC+TGG + chr1_2:75697715-75697734 Msa0092920:CDS 40.0%
ACCAGCTTAAAGAAAGAGGT+AGG - chr1_2:75697719-75697738 None:intergenic 40.0%
ACGGTTTATGGACATGTCAT+AGG + chr1_2:75698084-75698103 Msa0092920:intron 40.0%
GTTTCATGGATGCAGTTTGT+TGG + chr1_2:75698289-75698308 Msa0092920:intron 40.0%
GAGAGATCAAACCTGAAAGA+TGG + chr1_2:75698472-75698491 Msa0092920:CDS 40.0%
GAACTGTATGACCATCTTTC+AGG - chr1_2:75698486-75698505 None:intergenic 40.0%
GGTCATACAGTTCTTGATGT+CGG + chr1_2:75698493-75698512 Msa0092920:CDS 40.0%
CTGGAACTGACTGTAATTCT+TGG - chr1_2:75698551-75698570 None:intergenic 40.0%
CAAGAATTACAGTCAGTTCC+AGG + chr1_2:75698549-75698568 Msa0092920:intron 40.0%
AACAAACAGCTCTTCTTGCA+TGG + chr1_2:75698699-75698718 Msa0092920:intron 40.0%
GTTCTTCATATGCTGTGTCA+TGG - chr1_2:75698962-75698981 None:intergenic 40.0%
GATATCCAACTGGATGAAAG+TGG + chr1_2:75699002-75699021 Msa0092920:CDS 40.0%
GAAGTTTACCTCAAAGTGGT+AGG - chr1_2:75699070-75699089 None:intergenic 40.0%
ACAAGATACTTCTTTACCGG+AGG + chr1_2:75699249-75699268 Msa0092920:CDS 40.0%
CGGTACTACTGCAATACTAT+TGG - chr1_2:75699352-75699371 None:intergenic 40.0%
! TCAACCATTGGCTGGTAAAT+GGG + chr1_2:75699467-75699486 Msa0092920:CDS 40.0%
CAATTCAGCATATTCCAACC+TGG - chr1_2:75699509-75699528 None:intergenic 40.0%
GACTTCCATCAAGCCAATTA+TGG + chr1_2:75699661-75699680 Msa0092920:CDS 40.0%
GCAAAGATTCAGCTACCAAA+TGG + chr1_2:75699696-75699715 Msa0092920:CDS 40.0%
GAAAACAGACCAATGCCAAA+TGG + chr1_2:75699997-75700016 Msa0092920:three_prime_UTR 40.0%
! TCCTTTTGTGTCAACTACGA+CGG - chr1_2:75700023-75700042 None:intergenic 40.0%
AAAGACACACACGTACGTTG+TGG - chr1_2:75697287-75697306 None:intergenic 45.0%
GTCACAGAAGTCAAGAAGTG+TGG + chr1_2:75697336-75697355 Msa0092920:five_prime_UTR 45.0%
! AGAAGTCAAGAAGTGTGGTG+TGG + chr1_2:75697341-75697360 Msa0092920:five_prime_UTR 45.0%
AAGTGTGGTGTGGTAGTTGA+TGG + chr1_2:75697351-75697370 Msa0092920:exon 45.0%
TGAACCAAGCATCAGCTTCA+CGG - chr1_2:75697416-75697435 None:intergenic 45.0%
! ACTGATTCATCAAGGGTGTG+TGG + chr1_2:75697811-75697830 Msa0092920:intron 45.0%
! CTGATTCATCAAGGGTGTGT+GGG + chr1_2:75697812-75697831 Msa0092920:intron 45.0%
GTGTGGGATGAATGAATGGT+AGG + chr1_2:75697828-75697847 Msa0092920:intron 45.0%
GTTCTGCCTAATAGTCTCAC+AGG + chr1_2:75698119-75698138 Msa0092920:intron 45.0%
CGAATATGGTGGTAGGGTAA+AGG + chr1_2:75698196-75698215 Msa0092920:intron 45.0%
CTCTTCTGCCTCAAAGACAT+TGG + chr1_2:75698414-75698433 Msa0092920:CDS 45.0%
TGCCTCAAAGACATTGGAAG+AGG + chr1_2:75698420-75698439 Msa0092920:CDS 45.0%
AGCCTCTTCCAATGTCTTTG+AGG - chr1_2:75698425-75698444 None:intergenic 45.0%
ACAGTTCTTGATGTCGGATG+CGG + chr1_2:75698499-75698518 Msa0092920:CDS 45.0%
ATTGCAGATTCCTGTAACCC+TGG - chr1_2:75698570-75698589 None:intergenic 45.0%
TCCAACTGGATGAAAGTGGA+TGG + chr1_2:75699006-75699025 Msa0092920:CDS 45.0%
AGTGGTAGGCAAATGCTTTG+TGG - chr1_2:75699056-75699075 None:intergenic 45.0%
AGCATTTGCCTACCACTTTG+AGG + chr1_2:75699059-75699078 Msa0092920:CDS 45.0%
TACTGTTGTCAACCATTGGC+TGG + chr1_2:75699459-75699478 Msa0092920:CDS 45.0%
! GTCAACCATTGGCTGGTAAA+TGG + chr1_2:75699466-75699485 Msa0092920:CDS 45.0%
GTTTCCCATTTACCAGCCAA+TGG - chr1_2:75699474-75699493 None:intergenic 45.0%
CGAAGAGTGGCTCAAAAGAA+TGG + chr1_2:75699628-75699647 Msa0092920:CDS 45.0%
!! CTACCAAATGGACTGTCTAC+TGG + chr1_2:75699708-75699727 Msa0092920:CDS 45.0%
TCTCCAGTAGACAGTCCATT+TGG - chr1_2:75699714-75699733 None:intergenic 45.0%
!! AGCTTCACGGTGGTGTTGTA+AGG - chr1_2:75697403-75697422 None:intergenic 50.0%
ACGTGTGAGTCTCCTGATGA+CGG - chr1_2:75697464-75697483 None:intergenic 50.0%
GGGTGTGTGGGATGAATGAA+TGG + chr1_2:75697824-75697843 Msa0092920:intron 50.0%
!! CTCACAGGTGTTTTTGTCCG+TGG + chr1_2:75698134-75698153 Msa0092920:intron 50.0%
TTCTTGATGTCGGATGCGGT+TGG + chr1_2:75698503-75698522 Msa0092920:intron 50.0%
TCTTGATGTCGGATGCGGTT+GGG + chr1_2:75698504-75698523 Msa0092920:intron 50.0%
ACAGTCAGTTCCAGGGTTAC+AGG + chr1_2:75698557-75698576 Msa0092920:intron 50.0%
! TTTTTCACTGCCCCCTTGTC+AGG + chr1_2:75698773-75698792 Msa0092920:intron 50.0%
! TTTTCACTGCCCCCTTGTCA+GGG + chr1_2:75698774-75698793 Msa0092920:intron 50.0%
GCCATCCACTTTCATCCAGT+TGG - chr1_2:75699010-75699029 None:intergenic 50.0%
GGAAACACTACGCACAAACC+AGG + chr1_2:75699488-75699507 Msa0092920:CDS 50.0%
ACACTACGCACAAACCAGGT+TGG + chr1_2:75699492-75699511 Msa0092920:intron 50.0%
TGTCAACTACGACGGCCATT+TGG - chr1_2:75700015-75700034 None:intergenic 50.0%
GCCGTCGTAGTTGACACAAA+AGG + chr1_2:75700019-75700038 Msa0092920:three_prime_UTR 50.0%
ACCACCGTGAAGCTGATGCT+TGG + chr1_2:75697409-75697428 Msa0092920:CDS 55.0%
ACCAAGCATCAGCTTCACGG+TGG - chr1_2:75697413-75697432 None:intergenic 55.0%
!! GTCTCCTGATGACGGCATCA+GGG - chr1_2:75697456-75697475 None:intergenic 55.0%
!! AGTCTCCTGATGACGGCATC+AGG - chr1_2:75697457-75697476 None:intergenic 55.0%
CTTGATGTCGGATGCGGTTG+GGG + chr1_2:75698505-75698524 Msa0092920:intron 55.0%
TTGATGTCGGATGCGGTTGG+GGG + chr1_2:75698506-75698525 Msa0092920:intron 55.0%
GGAGCTGCAGCTGCAAAATG+TGG + chr1_2:75698795-75698814 Msa0092920:CDS 55.0%
TGCTGCAGGCATAGTTCCTC+CGG - chr1_2:75699268-75699287 None:intergenic 55.0%
CTACGACGGCCATTTGGCAT+TGG - chr1_2:75700009-75700028 None:intergenic 55.0%
TGCTCCCTGATGCCGTCATC+AGG + chr1_2:75697449-75697468 Msa0092920:CDS 60.0%
AGCTGCAGCTCCCTGACAAG+GGG - chr1_2:75698787-75698806 None:intergenic 60.0%
CAGCTGCAGCTCCCTGACAA+GGG - chr1_2:75698788-75698807 None:intergenic 60.0%
GCTGCAGCTCCCTGACAAGG+GGG - chr1_2:75698786-75698805 None:intergenic 65.0%
GCAGCTGCAGCTCCCTGACA+AGG - chr1_2:75698789-75698808 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75697241 75700126 75697241 ID=Msa0092920;Name=Msa0092920
chr1_2 mRNA 75697241 75700126 75697241 ID=Msa0092920-mRNA-1;Parent=Msa0092920;Name=Msa0092920-mRNA-1;_AED=0.15;_eAED=0.15;_QI=129|0.87|0.77|1|0.75|0.77|9|306|345
chr1_2 exon 75697241 75697565 75697241 ID=Msa0092920-mRNA-1:exon:26646;Parent=Msa0092920-mRNA-1
chr1_2 exon 75697654 75697762 75697654 ID=Msa0092920-mRNA-1:exon:26647;Parent=Msa0092920-mRNA-1
chr1_2 exon 75698402 75698520 75698402 ID=Msa0092920-mRNA-1:exon:26648;Parent=Msa0092920-mRNA-1
chr1_2 exon 75698561 75698627 75698561 ID=Msa0092920-mRNA-1:exon:26649;Parent=Msa0092920-mRNA-1
chr1_2 exon 75698795 75698894 75698795 ID=Msa0092920-mRNA-1:exon:26650;Parent=Msa0092920-mRNA-1
chr1_2 exon 75698970 75699080 75698970 ID=Msa0092920-mRNA-1:exon:26651;Parent=Msa0092920-mRNA-1
chr1_2 exon 75699225 75699308 75699225 ID=Msa0092920-mRNA-1:exon:26652;Parent=Msa0092920-mRNA-1
chr1_2 exon 75699451 75699509 75699451 ID=Msa0092920-mRNA-1:exon:26653;Parent=Msa0092920-mRNA-1
chr1_2 exon 75699628 75700126 75699628 ID=Msa0092920-mRNA-1:exon:26654;Parent=Msa0092920-mRNA-1
chr1_2 five_prime_UTR 75697241 75697369 75697241 ID=Msa0092920-mRNA-1:five_prime_utr;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75697370 75697565 75697370 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75697654 75697762 75697654 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75698402 75698520 75698402 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75698561 75698627 75698561 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75698795 75698894 75698795 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75698970 75699080 75698970 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75699225 75699308 75699225 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75699451 75699509 75699451 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 CDS 75699628 75699820 75699628 ID=Msa0092920-mRNA-1:cds;Parent=Msa0092920-mRNA-1
chr1_2 three_prime_UTR 75699821 75700126 75699821 ID=Msa0092920-mRNA-1:three_prime_utr;Parent=Msa0092920-mRNA-1
Gene Sequence

>Msa0092920

ATGGAAAAGATGGAAGAGATGATGCAGCTGCCTTACAACACCACCGTGAAGCTGATGCTTGGTTCACTCGAACGCAATTTGCTCCCTGATGCCGTCATCAGGAGACTCACACGTTTGCTTTTGTCAACTCGCCTTCGTTCTTCTTACAAGCCTTCTTCTGAACTTCAGCTTTCTGATCTTCTCCAATTTGCTCACTCTTTACAAGAGATGCCTATTGCTGTCAGTACTGATGTCCCAAAATCTCAACATTACGAATTACCTACCTCTTTCTTTAAGCTGGTTCTTGGAAACAACCTCAAATACAGTTCGTGTTATTTCTCTTCTGCCTCAAAGACATTGGAAGAGGCTGAAGAAGAAATGTTGAAACTGTATTGCGAGAGATCAAACCTGAAAGATGGTCATACAGTTCTTGATGTCGGATGCGTCAGTTCCAGGGTTACAGGAATCTGCAATTCCACGACTCAAAAAGCTTTTATTGAGGAGAAATGCCGGGAGCTGCAGCTGCAAAATGTGGATATCATTGTTGCAGACATTAGTACATTTGAAATGGAAGCTTCTTATGACAGAATATTTTCCATAGAAATGTTTGAGCATATGAAGAACTATAAAGATCTTCTCAAGAAGATATCCAACTGGATGAAAGTGGATGGCCTTTTATTCGTTCATCATTTCTGCCACAAAGCATTTGCCTACCACTTTGAGGACAAAAATGAAGATGATTGGATTACAAGATACTTCTTTACCGGAGGAACTATGCCTGCAGCAAATCTACTTCTTTATTTCCAAGATGATGTTACTGTTGTCAACCATTGGCTGGTAAATGGGAAACACTACGCACAAACCAGCGAAGAGTGGCTCAAAAGAATGGATAAGAACAAGACTTCCATCAAGCCAATTATGGAATCAACATATGGCAAAGATTCAGCTACCAAATGGACTGTCTACTGGAGAACGTTTTTCATAGCTGTAGCAGAACTATTTGGATACAATAATGGTGAAGAATGGATGGTTGCACACTTTCTTTTCAAAAAGAAATAA

Protein sequence

>Msa0092920

MEKMEEMMQLPYNTTVKLMLGSLERNLLPDAVIRRLTRLLLSTRLRSSYKPSSELQLSDLLQFAHSLQEMPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEEAEEEMLKLYCERSNLKDGHTVLDVGCVSSRVTGICNSTTQKAFIEEKCRELQLQNVDIIVADISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISNWMKVDGLLFVHHFCHKAFAYHFEDKNEDDWITRYFFTGGTMPAANLLLYFQDDVTVVNHWLVNGKHYAQTSEEWLKRMDKNKTSIKPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK*