Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012710 | Msa0372440 | 0.804821 | 1.797064e-49 | -8.615850e-47 |
| Msa0017320 | Msa0372440 | 0.842195 | 2.998148e-58 | -8.615850e-47 |
| Msa0038870 | Msa0372440 | 0.807129 | 5.877819e-50 | -8.615850e-47 |
| Msa0041690 | Msa0372440 | 0.806439 | 8.223598e-50 | -8.615850e-47 |
| Msa0065650 | Msa0372440 | 0.813919 | 2.005290e-51 | -8.615850e-47 |
| Msa0095360 | Msa0372440 | 0.821851 | 3.241397e-53 | -8.615850e-47 |
| Msa0095770 | Msa0372440 | 0.822355 | 2.475829e-53 | -8.615850e-47 |
| Msa0111080 | Msa0372440 | 0.803743 | 3.013578e-49 | -8.615850e-47 |
| Msa0138210 | Msa0372440 | 0.802013 | 6.860792e-49 | -8.615850e-47 |
| Msa0142500 | Msa0372440 | 0.846980 | 1.544260e-59 | -8.615850e-47 |
| Msa0146080 | Msa0372440 | 0.822969 | 1.782590e-53 | -8.615850e-47 |
| Msa0152560 | Msa0372440 | 0.804602 | 1.996377e-49 | -8.615850e-47 |
| Msa0154920 | Msa0372440 | 0.809246 | 2.080235e-50 | -8.615850e-47 |
| Msa0171980 | Msa0372440 | 0.831364 | 1.741112e-55 | -8.615850e-47 |
| Msa0183870 | Msa0372440 | 0.801162 | 1.025710e-48 | -8.615850e-47 |
| Msa0187490 | Msa0372440 | 0.802676 | 5.011239e-49 | -8.615850e-47 |
| Msa0192640 | Msa0372440 | 0.807086 | 6.001825e-50 | -8.615850e-47 |
| Msa0202930 | Msa0372440 | 0.816953 | 4.238030e-52 | -8.615850e-47 |
| Msa0232340 | Msa0372440 | 0.817467 | 3.248341e-52 | -8.615850e-47 |
| Msa0372440 | Msa0382310 | 0.803048 | 4.198141e-49 | -8.615850e-47 |
| Msa0372440 | Msa0394690 | 0.813252 | 2.811408e-51 | -8.615850e-47 |
| Msa0372440 | Msa0395980 | 0.808566 | 2.908219e-50 | -8.615850e-47 |
| Msa0372440 | Msa0403490 | 0.809548 | 1.792264e-50 | -8.615850e-47 |
| Msa0372440 | Msa0430950 | 0.810140 | 1.336259e-50 | -8.615850e-47 |
| Msa0372440 | Msa0431210 | 0.806927 | 6.485413e-50 | -8.615850e-47 |
| Msa0372440 | Msa0432500 | 0.810823 | 9.514502e-51 | -8.615850e-47 |
| Msa0372440 | Msa0443430 | 0.803958 | 2.719209e-49 | -8.615850e-47 |
| Msa0372440 | Msa0482180 | 0.815676 | 8.180742e-52 | -8.615850e-47 |
| Msa0372440 | Msa0491000 | 0.809871 | 1.527427e-50 | -8.615850e-47 |
| Msa0372440 | Msa0520270 | 0.809346 | 1.980321e-50 | -8.615850e-47 |
| Msa0372440 | Msa0566350 | 0.825904 | 3.635164e-54 | -8.615850e-47 |
| Msa0372440 | Msa0566750 | 0.833234 | 5.996558e-56 | -8.615850e-47 |
| Msa0372440 | Msa0569780 | 0.814720 | 1.334351e-51 | -8.615850e-47 |
| Msa0372440 | Msa0585070 | 0.824401 | 8.235809e-54 | -8.615850e-47 |
| Msa0372440 | Msa0588120 | 0.814059 | 1.868345e-51 | -8.615850e-47 |
| Msa0372440 | Msa0594200 | 0.836257 | 1.040625e-56 | -8.615850e-47 |
| Msa0372440 | Msa0600450 | 0.811673 | 6.225213e-51 | -8.615850e-47 |
| Msa0372440 | Msa0628500 | 0.829723 | 4.387753e-55 | -8.615850e-47 |
| Msa0372440 | Msa0640940 | 0.813149 | 2.962342e-51 | -8.615850e-47 |
| Msa0372440 | Msa0641730 | 0.810970 | 8.844496e-51 | -8.615850e-47 |
| Msa0372440 | Msa0679360 | 0.804884 | 1.743441e-49 | -8.615850e-47 |
| Msa0372440 | Msa0705990 | 0.800464 | 1.423920e-48 | -8.615850e-47 |
| Msa0372440 | Msa0721340 | 0.817509 | 3.178927e-52 | -8.615850e-47 |
| Msa0372440 | Msa0724370 | 0.809898 | 1.506748e-50 | -8.615850e-47 |
| Msa0372440 | Msa0732600 | 0.819362 | 1.208717e-52 | -8.615850e-47 |
| Msa0372440 | Msa0743530 | 0.821997 | 2.998037e-53 | -8.615850e-47 |
| Msa0372440 | Msa0746170 | 0.825567 | 4.369636e-54 | -8.615850e-47 |
| Msa0372440 | Msa0746210 | 0.823543 | 1.309129e-53 | -8.615850e-47 |
| Msa0372440 | Msa0789560 | 0.821022 | 5.035858e-53 | -8.615850e-47 |
| Msa0372440 | Msa0794210 | 0.808396 | 3.161752e-50 | -8.615850e-47 |
| Msa0372440 | Msa0809140 | 0.823662 | 1.227900e-53 | -8.615850e-47 |
| Msa0372440 | Msa0811040 | 0.820437 | 6.861714e-53 | -8.615850e-47 |
| Msa0372440 | Msa0829220 | 0.804079 | 2.565986e-49 | -8.615850e-47 |
| Msa0372440 | Msa0844110 | 0.805088 | 1.580022e-49 | -8.615850e-47 |
| Msa0372440 | Msa0857300 | 0.806730 | 7.137440e-50 | -8.615850e-47 |
| Msa0372440 | Msa0861470 | 0.800589 | 1.342817e-48 | -8.615850e-47 |
| Msa0372440 | Msa0861570 | 0.800587 | 1.343613e-48 | -8.615850e-47 |
| Msa0372440 | Msa0861830 | 0.810401 | 1.174207e-50 | -8.615850e-47 |
| Msa0372440 | Msa0866400 | 0.815306 | 9.892241e-52 | -8.615850e-47 |
| Msa0372440 | Msa0903780 | 0.813952 | 1.972050e-51 | -8.615850e-47 |
| Msa0372440 | Msa0947800 | 0.814686 | 1.357778e-51 | -8.615850e-47 |
| Msa0372440 | Msa0992600 | 0.804081 | 2.562886e-49 | -8.615850e-47 |
| Msa0372440 | Msa1010460 | 0.813588 | 2.372212e-51 | -8.615850e-47 |
| Msa0372440 | Msa1036740 | 0.823700 | 1.202444e-53 | -8.615850e-47 |
| Msa0372440 | Msa1037520 | 0.809661 | 1.694354e-50 | -8.615850e-47 |
| Msa0372440 | Msa1042660 | 0.869930 | 2.139466e-66 | -8.615850e-47 |
| Msa0372440 | Msa1063420 | 0.809015 | 2.331598e-50 | -8.615850e-47 |
| Msa0372440 | Msa1071320 | 0.801739 | 7.809332e-49 | -8.615850e-47 |
| Msa0372440 | Msa1072900 | 0.834480 | 2.924709e-56 | -8.615850e-47 |
| Msa0372440 | Msa1077070 | 0.800239 | 1.582014e-48 | -8.615850e-47 |
| Msa0372440 | Msa1096550 | 0.807844 | 4.143952e-50 | -8.615850e-47 |
| Msa0372440 | Msa1109820 | 0.814148 | 1.785193e-51 | -8.615850e-47 |
| Msa0372440 | Msa1122780 | 0.803698 | 3.079168e-49 | -8.615850e-47 |
| Msa0372440 | Msa1127430 | 0.824064 | 9.882506e-54 | -8.615850e-47 |
| Msa0372440 | Msa1131490 | 0.826627 | 2.445824e-54 | -8.615850e-47 |
| Msa0372440 | Msa1163870 | 0.824301 | 8.692526e-54 | -8.615850e-47 |
| Msa0372440 | Msa1164020 | 0.800103 | 1.686281e-48 | -8.615850e-47 |
| Msa0372440 | Msa1177780 | 0.811263 | 7.642554e-51 | -8.615850e-47 |
| Msa0372440 | Msa1197070 | 0.822530 | 2.254866e-53 | -8.615850e-47 |
| Msa0372440 | Msa1205480 | 0.812055 | 5.139294e-51 | -8.615850e-47 |
| Msa0372440 | Msa1205590 | 0.820315 | 7.319424e-53 | -8.615850e-47 |
| Msa0372440 | Msa1206650 | 0.816389 | 5.670229e-52 | -8.615850e-47 |
| Msa0372440 | Msa1207350 | 0.802280 | 6.047881e-49 | -8.615850e-47 |
| Msa0372440 | Msa1209190 | 0.810897 | 9.173719e-51 | -8.615850e-47 |
| Msa0372440 | Msa1250110 | 0.841361 | 4.980130e-58 | -8.615850e-47 |
| Msa0372440 | Msa1250730 | 0.834591 | 2.743208e-56 | -8.615850e-47 |
| Msa0372440 | Msa1270660 | 0.831462 | 1.646234e-55 | -8.615850e-47 |
| Msa0372440 | Msa1270730 | 0.800774 | 1.231151e-48 | -8.615850e-47 |
| Msa0372440 | Msa1286550 | 0.821760 | 3.402162e-53 | -8.615850e-47 |
| Msa0372440 | Msa1297530 | 0.823198 | 1.575731e-53 | -8.615850e-47 |
| Msa0372440 | Msa1307180 | 0.805999 | 1.017521e-49 | -8.615850e-47 |
| Msa0372440 | Msa1331280 | 0.807352 | 5.270951e-50 | -8.615850e-47 |
| Msa0372440 | Msa1332050 | 0.807802 | 4.231373e-50 | -8.615850e-47 |
| Msa0372440 | Msa1336040 | 0.832146 | 1.116492e-55 | -8.615850e-47 |
| Msa0372440 | Msa1339190 | 0.821129 | 4.757768e-53 | -8.615850e-47 |
| Msa0372440 | Msa1344310 | 0.802698 | 4.957450e-49 | -8.615850e-47 |
| Msa0372440 | Msa1357190 | 0.811583 | 6.512023e-51 | -8.615850e-47 |
| Msa0372440 | Msa1372290 | 0.832543 | 8.900854e-56 | -8.615850e-47 |
| Msa0372440 | Msa1382020 | 0.800274 | 1.556072e-48 | -8.615850e-47 |
| Msa0372440 | Msa1396940 | 0.832091 | 1.152034e-55 | -8.615850e-47 |
| Msa0372440 | Msa1400120 | 0.812339 | 4.456156e-51 | -8.615850e-47 |
| Msa0372440 | Msa1416260 | 0.837256 | 5.785270e-57 | -8.615850e-47 |
| Msa0372440 | Msa1418920 | 0.814851 | 1.248010e-51 | -8.615850e-47 |
| Msa0372440 | Msa1422840 | 0.803168 | 3.965639e-49 | -8.615850e-47 |
| Msa0372440 | Msa1426910 | 0.800627 | 1.319161e-48 | -8.615850e-47 |
| Msa0372440 | Msa1428780 | 0.834501 | 2.889263e-56 | -8.615850e-47 |
| Msa0372440 | Msa1442790 | 0.814267 | 1.680706e-51 | -8.615850e-47 |
| Msa0372440 | Msa1444120 | 0.804731 | 1.876292e-49 | -8.615850e-47 |
| Msa0372440 | Msa1444260 | 0.805472 | 1.313152e-49 | -8.615850e-47 |
| Msa0372440 | Msa1454960 | 0.819343 | 1.220688e-52 | -8.615850e-47 |
| Msa0372440 | Msa1458030 | 0.802969 | 4.360045e-49 | -8.615850e-47 |
| Msa0372440 | Msa1463600 | 0.801703 | 7.944574e-49 | -8.615850e-47 |
| Msa0244930 | Msa0372440 | 0.825610 | 4.267439e-54 | -8.615850e-47 |
| Msa0271790 | Msa0372440 | 0.823761 | 1.163801e-53 | -8.615850e-47 |
| Msa0284450 | Msa0372440 | 0.813411 | 2.594171e-51 | -8.615850e-47 |
| Msa0304840 | Msa0372440 | 0.803507 | 3.372545e-49 | -8.615850e-47 |
| Msa0310430 | Msa0372440 | 0.831655 | 1.475861e-55 | -8.615850e-47 |
| Msa0312910 | Msa0372440 | 0.803530 | 3.336704e-49 | -8.615850e-47 |
| Msa0347750 | Msa0372440 | 0.812344 | 4.444861e-51 | -8.615850e-47 |
| Msa0347950 | Msa0372440 | 0.812875 | 3.401486e-51 | -8.615850e-47 |
| Msa0347990 | Msa0372440 | 0.821391 | 4.138964e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372440 | MtrunA17_Chr3g0120091 | 97.674 | 43 | 1 | 0 | 32 | 74 | 1 | 43 | 6.90e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTAGAGTCCTCAAAATT+TGG | 0.135898 | 3_1:+70896943 | None:intergenic |
| TCCCACTTCCATTCCTTCTT+AGG | 0.263163 | 3_1:+70897570 | None:intergenic |
| AGTTCAAACAGTTTGGCTTC+TGG | 0.307622 | 3_1:+70897927 | None:intergenic |
| TGGGAGTTCCAGCTCAAGTT+TGG | 0.326309 | 3_1:-70897552 | Msa0372440:CDS |
| CTTTAGAGTCCTCAAAATTT+GGG | 0.336690 | 3_1:+70896944 | None:intergenic |
| GCCATGTTGTGGTTGGGATC+AGG | 0.350494 | 3_1:-70897034 | Msa0372440:CDS |
| ATGTGCAACATGGGCTATTA+TGG | 0.360481 | 3_1:-70896998 | Msa0372440:CDS |
| TACATAGAAGCAGCCGTGTT+TGG | 0.417611 | 3_1:-70897963 | Msa0372440:CDS |
| GGGAGTTCCAGCTCAAGTTT+GGG | 0.421121 | 3_1:-70897551 | Msa0372440:CDS |
| CCATGTTGTGGTTGGGATCA+GGG | 0.449639 | 3_1:-70897033 | Msa0372440:CDS |
| GGCCATCTGCATGTGCAACA+TGG | 0.482270 | 3_1:-70897008 | Msa0372440:CDS |
| ATGTTGCACATGCAGATGGC+CGG | 0.495389 | 3_1:+70897010 | None:intergenic |
| GCTGCTGCCCAAACTTGAGC+TGG | 0.496231 | 3_1:+70897544 | None:intergenic |
| TCATCAGCCATGTTGTGGTT+GGG | 0.501070 | 3_1:-70897040 | Msa0372440:CDS |
| GTCATCAGCCATGTTGTGGT+TGG | 0.508937 | 3_1:-70897041 | Msa0372440:CDS |
| ACAGAGACTCAAAATGTTGA+GGG | 0.528820 | 3_1:-70896974 | Msa0372440:CDS |
| GTTGTGGTTGGGATCAGGGC+CGG | 0.544933 | 3_1:-70897029 | Msa0372440:CDS |
| AACCTAAGAAGGAATGGAAG+TGG | 0.544966 | 3_1:-70897572 | Msa0372440:CDS |
| GCCATCTGCATGTGCAACAT+GGG | 0.545810 | 3_1:-70897007 | Msa0372440:CDS |
| GGTGAGAACCTAAGAAGGAA+TGG | 0.550083 | 3_1:-70897578 | Msa0372440:CDS |
| TTGAGCCAACATGTTAGCAA+TGG | 0.557382 | 3_1:+70897493 | None:intergenic |
| CACAGAGACTCAAAATGTTG+AGG | 0.567343 | 3_1:-70896975 | Msa0372440:CDS |
| GCCCATGTTGCACATGCAGA+TGG | 0.577384 | 3_1:+70897006 | None:intergenic |
| CCCTGATCCCAACCACAACA+TGG | 0.583449 | 3_1:+70897033 | None:intergenic |
| TTTGGGCAGCAGCTTTCATG+AGG | 0.600879 | 3_1:-70897534 | Msa0372440:CDS |
| ACCTAAGAAGGAATGGAAGT+GGG | 0.611198 | 3_1:-70897571 | Msa0372440:CDS |
| TCAAACCATTGCTAACATGT+TGG | 0.611337 | 3_1:-70897498 | Msa0372440:CDS |
| GTATGGGTGAGAACCTAAGA+AGG | 0.616521 | 3_1:-70897583 | Msa0372440:CDS |
| AGAAGTCATCAGCCATGTTG+TGG | 0.623851 | 3_1:-70897045 | Msa0372440:CDS |
| CAGCTTTCATGAGGACACAG+AGG | 0.724339 | 3_1:-70897525 | Msa0372440:CDS |
| ATGAAAATAAGACTCAACAG+TGG | 0.736068 | 3_1:-70898005 | Msa0372440:CDS |
| CAAGACGAAACTCTTCACGC+CGG | 0.754527 | 3_1:-70897473 | Msa0372440:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTATTCTGTTTATTA+AGG | - | chr3_1:70897208-70897227 | Msa0372440:intron | 10.0% |
| !! | TAAATTATTCTGTTTATTAA+GGG | - | chr3_1:70897209-70897228 | Msa0372440:intron | 10.0% |
| !! | TTAAATTATTCTGTTTATTA+AGG | - | chr3_1:70897208-70897227 | Msa0372440:intron | 10.0% |
| !! | TAAATTATTCTGTTTATTAA+GGG | - | chr3_1:70897209-70897228 | Msa0372440:intron | 10.0% |
| !! | ATAAACAGAATAATTTAACT+TGG | + | chr3_1:70897206-70897225 | None:intergenic | 15.0% |
| !!! | ATAGTTAATTTTGATATGTT+TGG | - | chr3_1:70897592-70897611 | Msa0372440:intron | 15.0% |
| !! | ATAAACAGAATAATTTAACT+TGG | + | chr3_1:70897206-70897225 | None:intergenic | 15.0% |
| !!! | ATAGTTAATTTTGATATGTT+TGG | - | chr3_1:70897592-70897611 | Msa0372440:intron | 15.0% |
| !!! | ATTTGTTTGTAATTGTTGTT+TGG | - | chr3_1:70897345-70897364 | Msa0372440:intron | 20.0% |
| !! | AAATTTCAGTGTAAAAATCA+TGG | + | chr3_1:70897694-70897713 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGTAATTGTTGTT+TGG | - | chr3_1:70897345-70897364 | Msa0372440:intron | 20.0% |
| !! | AAATTTCAGTGTAAAAATCA+TGG | + | chr3_1:70897694-70897713 | None:intergenic | 20.0% |
| ! | AAGAAATGAAAAACCAAACA+CGG | + | chr3_1:70897013-70897032 | None:intergenic | 25.0% |
| ! | AAAGAGAAAGAAAGAAAGAA+GGG | + | chr3_1:70897095-70897114 | None:intergenic | 25.0% |
| ! | TATTCTGTTTATTAAGGGTA+AGG | - | chr3_1:70897214-70897233 | Msa0372440:intron | 25.0% |
| ! | ACAACAATTACAAACAAATC+AGG | + | chr3_1:70897344-70897363 | None:intergenic | 25.0% |
| !!! | TTGTTTGGTTGATTTTAGTA+TGG | - | chr3_1:70897360-70897379 | Msa0372440:intron | 25.0% |
| !!! | TGTTTGGTTGATTTTAGTAT+GGG | - | chr3_1:70897361-70897380 | Msa0372440:intron | 25.0% |
| !!! | TTTGTCGCTATAATTGATTT+TGG | - | chr3_1:70897563-70897582 | Msa0372440:CDS | 25.0% |
| ! | TAAATGTTAAGCTCAACTAA+AGG | - | chr3_1:70897813-70897832 | Msa0372440:intron | 25.0% |
| ! | AAATGTTAAGCTCAACTAAA+GGG | - | chr3_1:70897814-70897833 | Msa0372440:intron | 25.0% |
| !! | TGTAGTTTGTAAAACTGATT+TGG | - | chr3_1:70897850-70897869 | Msa0372440:intron | 25.0% |
| !! | GTAGTTTGTAAAACTGATTT+GGG | - | chr3_1:70897851-70897870 | Msa0372440:intron | 25.0% |
| !!! | TAGTTTGTAAAACTGATTTG+GGG | - | chr3_1:70897852-70897871 | Msa0372440:intron | 25.0% |
| ! | AAGAAATGAAAAACCAAACA+CGG | + | chr3_1:70897013-70897032 | None:intergenic | 25.0% |
| ! | AAAGAGAAAGAAAGAAAGAA+GGG | + | chr3_1:70897095-70897114 | None:intergenic | 25.0% |
| ! | TATTCTGTTTATTAAGGGTA+AGG | - | chr3_1:70897214-70897233 | Msa0372440:intron | 25.0% |
| ! | ACAACAATTACAAACAAATC+AGG | + | chr3_1:70897344-70897363 | None:intergenic | 25.0% |
| !!! | TTGTTTGGTTGATTTTAGTA+TGG | - | chr3_1:70897360-70897379 | Msa0372440:intron | 25.0% |
| !!! | TGTTTGGTTGATTTTAGTAT+GGG | - | chr3_1:70897361-70897380 | Msa0372440:intron | 25.0% |
| !!! | TTTGTCGCTATAATTGATTT+TGG | - | chr3_1:70897563-70897582 | Msa0372440:CDS | 25.0% |
| ! | TAAATGTTAAGCTCAACTAA+AGG | - | chr3_1:70897813-70897832 | Msa0372440:intron | 25.0% |
| ! | AAATGTTAAGCTCAACTAAA+GGG | - | chr3_1:70897814-70897833 | Msa0372440:intron | 25.0% |
| !! | TGTAGTTTGTAAAACTGATT+TGG | - | chr3_1:70897850-70897869 | Msa0372440:intron | 25.0% |
| !! | GTAGTTTGTAAAACTGATTT+GGG | - | chr3_1:70897851-70897870 | Msa0372440:intron | 25.0% |
| !!! | TAGTTTGTAAAACTGATTTG+GGG | - | chr3_1:70897852-70897871 | Msa0372440:intron | 25.0% |
| ATGAAAATAAGACTCAACAG+TGG | - | chr3_1:70896955-70896974 | Msa0372440:CDS | 30.0% | |
| GAAAGAGAAAGAAAGAAAGA+AGG | + | chr3_1:70897096-70897115 | None:intergenic | 30.0% | |
| TTATAGCGACAAAAACATAC+TGG | + | chr3_1:70897556-70897575 | None:intergenic | 30.0% | |
| !! | GTTGACTTTAACTTGAAGTT+AGG | - | chr3_1:70897648-70897667 | Msa0372440:intron | 30.0% |
| TATTCTAACATCTCGTAGTT+TGG | + | chr3_1:70897793-70897812 | None:intergenic | 30.0% | |
| TATGATTATGAAACCAGCTT+TGG | - | chr3_1:70897892-70897911 | Msa0372440:intron | 30.0% | |
| ATGAAAATAAGACTCAACAG+TGG | - | chr3_1:70896955-70896974 | Msa0372440:CDS | 30.0% | |
| GAAAGAGAAAGAAAGAAAGA+AGG | + | chr3_1:70897096-70897115 | None:intergenic | 30.0% | |
| TTATAGCGACAAAAACATAC+TGG | + | chr3_1:70897556-70897575 | None:intergenic | 30.0% | |
| !! | GTTGACTTTAACTTGAAGTT+AGG | - | chr3_1:70897648-70897667 | Msa0372440:intron | 30.0% |
| TATTCTAACATCTCGTAGTT+TGG | + | chr3_1:70897793-70897812 | None:intergenic | 30.0% | |
| TATGATTATGAAACCAGCTT+TGG | - | chr3_1:70897892-70897911 | Msa0372440:intron | 30.0% | |
| GAGGTGAAGTAAAGAAATGT+AGG | + | chr3_1:70897073-70897092 | None:intergenic | 35.0% | |
| TCAAACCATTGCTAACATGT+TGG | - | chr3_1:70897462-70897481 | Msa0372440:intron | 35.0% | |
| TACTGGAATGGAATCTAAGT+GGG | + | chr3_1:70897539-70897558 | None:intergenic | 35.0% | |
| ATACTGGAATGGAATCTAAG+TGG | + | chr3_1:70897540-70897559 | None:intergenic | 35.0% | |
| !! | GTCGCTATAATTGATTTTGG+AGG | - | chr3_1:70897566-70897585 | Msa0372440:CDS | 35.0% |
| !! | TTTGTAAAACTGATTTGGGG+AGG | - | chr3_1:70897855-70897874 | Msa0372440:intron | 35.0% |
| ACAGAGACTCAAAATGTTGA+GGG | - | chr3_1:70897986-70898005 | Msa0372440:CDS | 35.0% | |
| GAGGTGAAGTAAAGAAATGT+AGG | + | chr3_1:70897073-70897092 | None:intergenic | 35.0% | |
| TCAAACCATTGCTAACATGT+TGG | - | chr3_1:70897462-70897481 | Msa0372440:intron | 35.0% | |
| TACTGGAATGGAATCTAAGT+GGG | + | chr3_1:70897539-70897558 | None:intergenic | 35.0% | |
| ATACTGGAATGGAATCTAAG+TGG | + | chr3_1:70897540-70897559 | None:intergenic | 35.0% | |
| !! | GTCGCTATAATTGATTTTGG+AGG | - | chr3_1:70897566-70897585 | Msa0372440:CDS | 35.0% |
| !! | TTTGTAAAACTGATTTGGGG+AGG | - | chr3_1:70897855-70897874 | Msa0372440:intron | 35.0% |
| ACAGAGACTCAAAATGTTGA+GGG | - | chr3_1:70897986-70898005 | Msa0372440:CDS | 35.0% | |
| ! | AGTTCAAACAGTTTGGCTTC+TGG | + | chr3_1:70897036-70897055 | None:intergenic | 40.0% |
| TGGGAAGAGTTCAAACAGTT+TGG | + | chr3_1:70897043-70897062 | None:intergenic | 40.0% | |
| AAGAAATGTAGGCGTGTGAT+GGG | + | chr3_1:70897062-70897081 | None:intergenic | 40.0% | |
| AAAGAAATGTAGGCGTGTGA+TGG | + | chr3_1:70897063-70897082 | None:intergenic | 40.0% | |
| GAGAAAGAAAGAAAGAAGGG+AGG | + | chr3_1:70897092-70897111 | None:intergenic | 40.0% | |
| AACCTAAGAAGGAATGGAAG+TGG | - | chr3_1:70897388-70897407 | Msa0372440:intron | 40.0% | |
| ACCTAAGAAGGAATGGAAGT+GGG | - | chr3_1:70897389-70897408 | Msa0372440:intron | 40.0% | |
| TTGAGCCAACATGTTAGCAA+TGG | + | chr3_1:70897470-70897489 | None:intergenic | 40.0% | |
| GAATGGAATCTAAGTGGGAA+AGG | + | chr3_1:70897534-70897553 | None:intergenic | 40.0% | |
| GCGACAAAAACATACTGGAA+TGG | + | chr3_1:70897551-70897570 | None:intergenic | 40.0% | |
| ! | ATGTGCAACATGGGCTATTA+TGG | - | chr3_1:70897962-70897981 | Msa0372440:CDS | 40.0% |
| CACAGAGACTCAAAATGTTG+AGG | - | chr3_1:70897985-70898004 | Msa0372440:CDS | 40.0% | |
| ! | AGTTCAAACAGTTTGGCTTC+TGG | + | chr3_1:70897036-70897055 | None:intergenic | 40.0% |
| TGGGAAGAGTTCAAACAGTT+TGG | + | chr3_1:70897043-70897062 | None:intergenic | 40.0% | |
| AAGAAATGTAGGCGTGTGAT+GGG | + | chr3_1:70897062-70897081 | None:intergenic | 40.0% | |
| AAAGAAATGTAGGCGTGTGA+TGG | + | chr3_1:70897063-70897082 | None:intergenic | 40.0% | |
| GAGAAAGAAAGAAAGAAGGG+AGG | + | chr3_1:70897092-70897111 | None:intergenic | 40.0% | |
| AACCTAAGAAGGAATGGAAG+TGG | - | chr3_1:70897388-70897407 | Msa0372440:intron | 40.0% | |
| ACCTAAGAAGGAATGGAAGT+GGG | - | chr3_1:70897389-70897408 | Msa0372440:intron | 40.0% | |
| TTGAGCCAACATGTTAGCAA+TGG | + | chr3_1:70897470-70897489 | None:intergenic | 40.0% | |
| GAATGGAATCTAAGTGGGAA+AGG | + | chr3_1:70897534-70897553 | None:intergenic | 40.0% | |
| GCGACAAAAACATACTGGAA+TGG | + | chr3_1:70897551-70897570 | None:intergenic | 40.0% | |
| ! | ATGTGCAACATGGGCTATTA+TGG | - | chr3_1:70897962-70897981 | Msa0372440:CDS | 40.0% |
| CACAGAGACTCAAAATGTTG+AGG | - | chr3_1:70897985-70898004 | Msa0372440:CDS | 40.0% | |
| TACATAGAAGCAGCCGTGTT+TGG | - | chr3_1:70896997-70897016 | Msa0372440:CDS | 45.0% | |
| GTATGGGTGAGAACCTAAGA+AGG | - | chr3_1:70897377-70897396 | Msa0372440:intron | 45.0% | |
| GGTGAGAACCTAAGAAGGAA+TGG | - | chr3_1:70897382-70897401 | Msa0372440:intron | 45.0% | |
| TCCCACTTCCATTCCTTCTT+AGG | + | chr3_1:70897393-70897412 | None:intergenic | 45.0% | |
| AGAAGTCATCAGCCATGTTG+TGG | - | chr3_1:70897915-70897934 | Msa0372440:intron | 45.0% | |
| TCATCAGCCATGTTGTGGTT+GGG | - | chr3_1:70897920-70897939 | Msa0372440:intron | 45.0% | |
| TACATAGAAGCAGCCGTGTT+TGG | - | chr3_1:70896997-70897016 | Msa0372440:CDS | 45.0% | |
| GTATGGGTGAGAACCTAAGA+AGG | - | chr3_1:70897377-70897396 | Msa0372440:intron | 45.0% | |
| GGTGAGAACCTAAGAAGGAA+TGG | - | chr3_1:70897382-70897401 | Msa0372440:intron | 45.0% | |
| TCCCACTTCCATTCCTTCTT+AGG | + | chr3_1:70897393-70897412 | None:intergenic | 45.0% | |
| AGAAGTCATCAGCCATGTTG+TGG | - | chr3_1:70897915-70897934 | Msa0372440:intron | 45.0% | |
| TCATCAGCCATGTTGTGGTT+GGG | - | chr3_1:70897920-70897939 | Msa0372440:intron | 45.0% | |
| !! | ATACATAATAAATATAAATA+TGG | + | chr3_1:70897268-70897287 | None:intergenic | 5.0% |
| !! | ATACATAATAAATATAAATA+TGG | + | chr3_1:70897268-70897287 | None:intergenic | 5.0% |
| TGGGAGTTCCAGCTCAAGTT+TGG | - | chr3_1:70897408-70897427 | Msa0372440:intron | 50.0% | |
| GGGAGTTCCAGCTCAAGTTT+GGG | - | chr3_1:70897409-70897428 | Msa0372440:intron | 50.0% | |
| TTTGGGCAGCAGCTTTCATG+AGG | - | chr3_1:70897426-70897445 | Msa0372440:intron | 50.0% | |
| CAGCTTTCATGAGGACACAG+AGG | - | chr3_1:70897435-70897454 | Msa0372440:intron | 50.0% | |
| CAAGACGAAACTCTTCACGC+CGG | - | chr3_1:70897487-70897506 | Msa0372440:CDS | 50.0% | |
| GCTGATGACTTCTCCAAAGC+TGG | + | chr3_1:70897908-70897927 | None:intergenic | 50.0% | |
| GTCATCAGCCATGTTGTGGT+TGG | - | chr3_1:70897919-70897938 | Msa0372440:intron | 50.0% | |
| CCATGTTGTGGTTGGGATCA+GGG | - | chr3_1:70897927-70897946 | Msa0372440:intron | 50.0% | |
| ATGTTGCACATGCAGATGGC+CGG | + | chr3_1:70897953-70897972 | None:intergenic | 50.0% | |
| GCCATCTGCATGTGCAACAT+GGG | - | chr3_1:70897953-70897972 | Msa0372440:CDS | 50.0% | |
| TGGGAGTTCCAGCTCAAGTT+TGG | - | chr3_1:70897408-70897427 | Msa0372440:intron | 50.0% | |
| GGGAGTTCCAGCTCAAGTTT+GGG | - | chr3_1:70897409-70897428 | Msa0372440:intron | 50.0% | |
| TTTGGGCAGCAGCTTTCATG+AGG | - | chr3_1:70897426-70897445 | Msa0372440:intron | 50.0% | |
| CAGCTTTCATGAGGACACAG+AGG | - | chr3_1:70897435-70897454 | Msa0372440:intron | 50.0% | |
| CAAGACGAAACTCTTCACGC+CGG | - | chr3_1:70897487-70897506 | Msa0372440:CDS | 50.0% | |
| GCTGATGACTTCTCCAAAGC+TGG | + | chr3_1:70897908-70897927 | None:intergenic | 50.0% | |
| GTCATCAGCCATGTTGTGGT+TGG | - | chr3_1:70897919-70897938 | Msa0372440:intron | 50.0% | |
| CCATGTTGTGGTTGGGATCA+GGG | - | chr3_1:70897927-70897946 | Msa0372440:intron | 50.0% | |
| ATGTTGCACATGCAGATGGC+CGG | + | chr3_1:70897953-70897972 | None:intergenic | 50.0% | |
| GCCATCTGCATGTGCAACAT+GGG | - | chr3_1:70897953-70897972 | Msa0372440:CDS | 50.0% | |
| TTTCCCGAGCTGTCTGCTAC+CGG | + | chr3_1:70897509-70897528 | None:intergenic | 55.0% | |
| GCCATGTTGTGGTTGGGATC+AGG | - | chr3_1:70897926-70897945 | Msa0372440:intron | 55.0% | |
| CCCTGATCCCAACCACAACA+TGG | + | chr3_1:70897930-70897949 | None:intergenic | 55.0% | |
| GGCCATCTGCATGTGCAACA+TGG | - | chr3_1:70897952-70897971 | Msa0372440:CDS | 55.0% | |
| GCCCATGTTGCACATGCAGA+TGG | + | chr3_1:70897957-70897976 | None:intergenic | 55.0% | |
| TTTCCCGAGCTGTCTGCTAC+CGG | + | chr3_1:70897509-70897528 | None:intergenic | 55.0% | |
| GCCATGTTGTGGTTGGGATC+AGG | - | chr3_1:70897926-70897945 | Msa0372440:intron | 55.0% | |
| CCCTGATCCCAACCACAACA+TGG | + | chr3_1:70897930-70897949 | None:intergenic | 55.0% | |
| GGCCATCTGCATGTGCAACA+TGG | - | chr3_1:70897952-70897971 | Msa0372440:CDS | 55.0% | |
| GCCCATGTTGCACATGCAGA+TGG | + | chr3_1:70897957-70897976 | None:intergenic | 55.0% | |
| GCTGCTGCCCAAACTTGAGC+TGG | + | chr3_1:70897419-70897438 | None:intergenic | 60.0% | |
| GTTGTGGTTGGGATCAGGGC+CGG | - | chr3_1:70897931-70897950 | Msa0372440:intron | 60.0% | |
| GCTGCTGCCCAAACTTGAGC+TGG | + | chr3_1:70897419-70897438 | None:intergenic | 60.0% | |
| GTTGTGGTTGGGATCAGGGC+CGG | - | chr3_1:70897931-70897950 | Msa0372440:intron | 60.0% | |
| CACGCCGGTAGCAGACAGCT+CGG | - | chr3_1:70897502-70897521 | Msa0372440:CDS | 65.0% | |
| ACGCCGGTAGCAGACAGCTC+GGG | - | chr3_1:70897503-70897522 | Msa0372440:CDS | 65.0% | |
| CACGCCGGTAGCAGACAGCT+CGG | - | chr3_1:70897502-70897521 | Msa0372440:CDS | 65.0% | |
| ACGCCGGTAGCAGACAGCTC+GGG | - | chr3_1:70897503-70897522 | Msa0372440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 70896955 | 70898027 | 70896955 | ID=Msa0372440;Name=Msa0372440 |
| chr3_1 | mRNA | 70896955 | 70898027 | 70896955 | ID=Msa0372440-mRNA-1;Parent=Msa0372440;Name=Msa0372440-mRNA-1;_AED=0.61;_eAED=0.77;_QI=0|0|0|0.66|1|1|3|0|113 |
| chr3_1 | exon | 70897936 | 70898027 | 70897936 | ID=Msa0372440-mRNA-1:exon:15559;Parent=Msa0372440-mRNA-1 |
| chr3_1 | exon | 70897474 | 70897604 | 70897474 | ID=Msa0372440-mRNA-1:exon:15558;Parent=Msa0372440-mRNA-1 |
| chr3_1 | exon | 70896955 | 70897073 | 70896955 | ID=Msa0372440-mRNA-1:exon:15557;Parent=Msa0372440-mRNA-1 |
| chr3_1 | CDS | 70897936 | 70898027 | 70897936 | ID=Msa0372440-mRNA-1:cds;Parent=Msa0372440-mRNA-1 |
| chr3_1 | CDS | 70897474 | 70897604 | 70897474 | ID=Msa0372440-mRNA-1:cds;Parent=Msa0372440-mRNA-1 |
| chr3_1 | CDS | 70896955 | 70897073 | 70896955 | ID=Msa0372440-mRNA-1:cds;Parent=Msa0372440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
