Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378400 | XP_003602673.2 | 85.714 | 336 | 19 | 5 | 1 | 334 | 1 | 309 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378400 | G8A1P3 | 85.714 | 336 | 19 | 5 | 1 | 334 | 1 | 309 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001420 | Msa0378400 | 0.810597 | 1.065240e-50 | -8.615850e-47 |
| Msa0032700 | Msa0378400 | 0.818614 | 1.787809e-52 | -8.615850e-47 |
| Msa0047400 | Msa0378400 | 0.807615 | 4.634809e-50 | -8.615850e-47 |
| Msa0075860 | Msa0378400 | 0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0076100 | Msa0378400 | 0.852159 | 5.543778e-61 | -8.615850e-47 |
| Msa0097730 | Msa0378400 | 0.803243 | 3.826461e-49 | -8.615850e-47 |
| Msa0115410 | Msa0378400 | 0.802205 | 6.265966e-49 | -8.615850e-47 |
| Msa0121080 | Msa0378400 | 0.806939 | 6.447716e-50 | -8.615850e-47 |
| Msa0133390 | Msa0378400 | 0.851555 | 8.221556e-61 | -8.615850e-47 |
| Msa0138340 | Msa0378400 | 0.803492 | 3.397335e-49 | -8.615850e-47 |
| Msa0147960 | Msa0378400 | 0.803683 | 3.100493e-49 | -8.615850e-47 |
| Msa0164530 | Msa0378400 | 0.815686 | 8.140686e-52 | -8.615850e-47 |
| Msa0172820 | Msa0378400 | 0.810464 | 1.137665e-50 | -8.615850e-47 |
| Msa0179200 | Msa0378400 | 0.804526 | 2.070820e-49 | -8.615850e-47 |
| Msa0181560 | Msa0378400 | 0.846635 | 1.919424e-59 | -8.615850e-47 |
| Msa0184800 | Msa0378400 | 0.852911 | 3.383964e-61 | -8.615850e-47 |
| Msa0184900 | Msa0378400 | 0.846586 | 1.979636e-59 | -8.615850e-47 |
| Msa0188670 | Msa0378400 | 0.802347 | 5.857202e-49 | -8.615850e-47 |
| Msa0207150 | Msa0378400 | 0.830793 | 2.404622e-55 | -8.615850e-47 |
| Msa0217300 | Msa0378400 | 0.800358 | 1.495993e-48 | -8.615850e-47 |
| Msa0224980 | Msa0378400 | 0.800747 | 1.246617e-48 | -8.615850e-47 |
| Msa0378400 | Msa0383110 | 0.837318 | 5.577471e-57 | -8.615850e-47 |
| Msa0378400 | Msa0415060 | 0.818066 | 2.379005e-52 | -8.615850e-47 |
| Msa0378400 | Msa0415860 | 0.811990 | 5.310267e-51 | -8.615850e-47 |
| Msa0378400 | Msa0423820 | 0.801491 | 8.782858e-49 | -8.615850e-47 |
| Msa0378400 | Msa0427750 | 0.894845 | 1.679828e-75 | -8.615850e-47 |
| Msa0378400 | Msa0427960 | 0.889158 | 3.111942e-73 | -8.615850e-47 |
| Msa0378400 | Msa0431550 | 0.806438 | 8.226469e-50 | -8.615850e-47 |
| Msa0378400 | Msa0459970 | 0.839389 | 1.631637e-57 | -8.615850e-47 |
| Msa0378400 | Msa0464980 | 0.803536 | 3.326588e-49 | -8.615850e-47 |
| Msa0378400 | Msa0476560 | 0.803865 | 2.842971e-49 | -8.615850e-47 |
| Msa0378400 | Msa0515730 | 0.813977 | 1.947643e-51 | -8.615850e-47 |
| Msa0378400 | Msa0518150 | 0.804106 | 2.533097e-49 | -8.615850e-47 |
| Msa0378400 | Msa0518580 | 0.899299 | 2.274228e-77 | -8.615850e-47 |
| Msa0378400 | Msa0524570 | 0.838545 | 2.698274e-57 | -8.615850e-47 |
| Msa0378400 | Msa0527210 | 0.805381 | 1.372011e-49 | -8.615850e-47 |
| Msa0378400 | Msa0528830 | 0.841792 | 3.832682e-58 | -8.615850e-47 |
| Msa0378400 | Msa0531270 | 0.819413 | 1.176884e-52 | -8.615850e-47 |
| Msa0378400 | Msa0568300 | 0.800653 | 1.302584e-48 | -8.615850e-47 |
| Msa0378400 | Msa0576550 | 0.809565 | 1.776954e-50 | -8.615850e-47 |
| Msa0378400 | Msa0589680 | 0.804046 | 2.606602e-49 | -8.615850e-47 |
| Msa0378400 | Msa0610300 | 0.835039 | 2.116172e-56 | -8.615850e-47 |
| Msa0378400 | Msa0624700 | 0.817168 | 3.791938e-52 | -8.615850e-47 |
| Msa0378400 | Msa0628440 | 0.826480 | 2.651578e-54 | -8.615850e-47 |
| Msa0378400 | Msa0663580 | 0.802908 | 4.488290e-49 | -8.615850e-47 |
| Msa0378400 | Msa0668160 | 0.805083 | 1.584389e-49 | -8.615850e-47 |
| Msa0378400 | Msa0687620 | 0.802156 | 6.414034e-49 | -8.615850e-47 |
| Msa0378400 | Msa0692480 | 0.807069 | 6.052130e-50 | -8.615850e-47 |
| Msa0378400 | Msa0692710 | 0.812270 | 4.612325e-51 | -8.615850e-47 |
| Msa0378400 | Msa0693050 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa0378400 | Msa0710950 | 0.810086 | 1.372495e-50 | -8.615850e-47 |
| Msa0378400 | Msa0791170 | 0.815580 | 8.594615e-52 | -8.615850e-47 |
| Msa0378400 | Msa0796840 | 0.801219 | 9.984916e-49 | -8.615850e-47 |
| Msa0378400 | Msa0832270 | 0.821399 | 4.122268e-53 | -8.615850e-47 |
| Msa0378400 | Msa0833630 | 0.808550 | 2.931281e-50 | -8.615850e-47 |
| Msa0378400 | Msa0879820 | 0.828475 | 8.809216e-55 | -8.615850e-47 |
| Msa0378400 | Msa0901140 | 0.800909 | 1.155274e-48 | -8.615850e-47 |
| Msa0378400 | Msa0934800 | 0.809311 | 2.015018e-50 | -8.615850e-47 |
| Msa0378400 | Msa1040070 | 0.805780 | 1.131319e-49 | -8.615850e-47 |
| Msa0378400 | Msa1056790 | 0.812848 | 3.447624e-51 | -8.615850e-47 |
| Msa0378400 | Msa1190510 | 0.825917 | 3.609513e-54 | -8.615850e-47 |
| Msa0378400 | Msa1254990 | 0.806133 | 9.537373e-50 | -8.615850e-47 |
| Msa0378400 | Msa1267390 | 0.811707 | 6.117802e-51 | -8.615850e-47 |
| Msa0378400 | Msa1269370 | 0.817202 | 3.725757e-52 | -8.615850e-47 |
| Msa0378400 | Msa1286470 | 0.819626 | 1.052393e-52 | -8.615850e-47 |
| Msa0378400 | Msa1301610 | 0.800524 | 1.384314e-48 | -8.615850e-47 |
| Msa0378400 | Msa1338600 | 0.800599 | 1.336173e-48 | -8.615850e-47 |
| Msa0378400 | Msa1371540 | 0.800450 | 1.432860e-48 | -8.615850e-47 |
| Msa0378400 | Msa1372680 | 0.827633 | 1.404454e-54 | -8.615850e-47 |
| Msa0378400 | Msa1400830 | 0.809945 | 1.471937e-50 | -8.615850e-47 |
| Msa0378400 | Msa1411930 | 0.802968 | 4.361024e-49 | -8.615850e-47 |
| Msa0378400 | Msa1456170 | 0.832801 | 7.683638e-56 | -8.615850e-47 |
| Msa0246510 | Msa0378400 | 0.806906 | 6.550962e-50 | -8.615850e-47 |
| Msa0258410 | Msa0378400 | 0.805013 | 1.638142e-49 | -8.615850e-47 |
| Msa0273550 | Msa0378400 | 0.800221 | 1.595691e-48 | -8.615850e-47 |
| Msa0296490 | Msa0378400 | 0.802321 | 5.931120e-49 | -8.615850e-47 |
| Msa0323790 | Msa0378400 | 0.800739 | 1.251498e-48 | -8.615850e-47 |
| Msa0333350 | Msa0378400 | 0.815557 | 8.697681e-52 | -8.615850e-47 |
| Msa0335740 | Msa0378400 | 0.803507 | 3.372913e-49 | -8.615850e-47 |
| Msa0340440 | Msa0378400 | 0.802198 | 6.287688e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378400 | MtrunA17_Chr3g0130681 | 85.714 | 336 | 19 | 5 | 1 | 334 | 1 | 309 | 0.0 | 537 |
| Msa0378400 | MtrunA17_Chr8g0384691 | 57.576 | 231 | 76 | 2 | 105 | 333 | 117 | 327 | 8.29e-92 | 277 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378400 | AT4G33480.1 | 65.532 | 235 | 58 | 4 | 103 | 334 | 121 | 335 | 1.67e-101 | 302 |
Find 87 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAGATGCATTCGTAATT+TGG | 0.146385 | 3_1:-79163990 | None:intergenic |
| GAAGAAGGAGAATGCTTCTT+TGG | 0.277770 | 3_1:-79162490 | None:intergenic |
| ATCCTGATGAAGAACTAAAA+TGG | 0.282546 | 3_1:-79165937 | None:intergenic |
| AACAAGAGTAATGGTGAAAT+TGG | 0.297804 | 3_1:+79162568 | Msa0378400:CDS |
| AAATTCAGTCTCTTCATCTA+TGG | 0.303961 | 3_1:-79165732 | None:intergenic |
| ACGAAACCAGCCGGTGGTTT+AGG | 0.307214 | 3_1:-79162643 | None:intergenic |
| AGAAGAATTGGAAATGGAAT+TGG | 0.329446 | 3_1:-79162596 | None:intergenic |
| AATTTGAGGCAGAGAAGAAT+TGG | 0.329493 | 3_1:-79162608 | None:intergenic |
| ATTGGAAGCGCTAGAGATAA+TGG | 0.329827 | 3_1:-79162461 | None:intergenic |
| ATCAGGATTGCCCCACTGTT+GGG | 0.364007 | 3_1:+79165952 | Msa0378400:three_prime_UTR |
| CGAATGCATCTGATTTATAG+TGG | 0.365590 | 3_1:+79163998 | Msa0378400:CDS |
| CAAGCTTCTTACTTCTTCAA+TGG | 0.373400 | 3_1:+79162681 | Msa0378400:CDS |
| TCCTGCGAACAACCTTCCTT+TGG | 0.378943 | 3_1:+79162979 | Msa0378400:CDS |
| AGGCAGAGAAGAATTGGAAA+TGG | 0.386145 | 3_1:-79162602 | None:intergenic |
| GTGCTCTGTAATATTTGTAT+AGG | 0.414803 | 3_1:-79163314 | None:intergenic |
| GGGAGCTGAGAAGGAAATAA+TGG | 0.418161 | 3_1:-79165601 | None:intergenic |
| CATCAGGATTGCCCCACTGT+TGG | 0.420070 | 3_1:+79165951 | Msa0378400:three_prime_UTR |
| TTCCTTTGGAATGCGTGATA+AGG | 0.446204 | 3_1:+79162993 | Msa0378400:CDS |
| TCCCCACTCATTACAGAGTC+TGG | 0.452281 | 3_1:+79165578 | Msa0378400:CDS |
| TTGTTTCTGGTGGATGAAGA+AGG | 0.472935 | 3_1:-79162505 | None:intergenic |
| AGATGGTAAAGATGATGGCT+TGG | 0.488428 | 3_1:+79164657 | Msa0378400:intron |
| TTGGAAGCGCTAGAGATAAT+GGG | 0.489961 | 3_1:-79162460 | None:intergenic |
| GACTGAATTTAATGCCTTGG+TGG | 0.490843 | 3_1:+79165745 | Msa0378400:CDS |
| AGAAATCACACACTTCAATC+AGG | 0.494930 | 3_1:+79164693 | Msa0378400:CDS |
| GCACTCCTTGACTCACTGTT+GGG | 0.503400 | 3_1:+79165867 | Msa0378400:CDS |
| GACATCTTTGACTTTCATGC+AGG | 0.506567 | 3_1:+79164158 | Msa0378400:CDS |
| GGTAGTGGCGTAGGAATTTG+AGG | 0.510408 | 3_1:-79162622 | None:intergenic |
| CGCACTCCTTGACTCACTGT+TGG | 0.510918 | 3_1:+79165866 | Msa0378400:CDS |
| GGAAAGGAAAATTGAAGTCT+CGG | 0.511604 | 3_1:-79162370 | None:intergenic |
| AAAACTTACTTCTAAAACAA+GGG | 0.520997 | 3_1:-79166136 | None:intergenic |
| GAAATACATGGGAGCTGAGA+AGG | 0.521671 | 3_1:-79165610 | None:intergenic |
| AGAGACTGAATTTAATGCCT+TGG | 0.522159 | 3_1:+79165742 | Msa0378400:CDS |
| GAAAGGAAAATTGAAGTCTC+GGG | 0.522171 | 3_1:-79162369 | None:intergenic |
| CCAGCCGGTGGTTTAGGTAG+TGG | 0.522568 | 3_1:-79162637 | None:intergenic |
| GCAAGTGCAAAAGAAGCAGC+AGG | 0.531459 | 3_1:-79163968 | None:intergenic |
| TTATCCTTGCAGGATCAGAA+TGG | 0.536096 | 3_1:+79165521 | Msa0378400:intron |
| ATGCTTCTTTGGTTGAACAT+TGG | 0.536426 | 3_1:-79162479 | None:intergenic |
| AGAACTAAAATGGAAACAGT+AGG | 0.541288 | 3_1:-79165927 | None:intergenic |
| AAATTGAAGTCTCGGGGAGG+AGG | 0.544141 | 3_1:-79162362 | None:intergenic |
| GTCAACACTCACTAAAACAA+GGG | 0.548440 | 3_1:-79166094 | None:intergenic |
| AAGAATAACAACAAGAGTAA+TGG | 0.549289 | 3_1:+79162559 | Msa0378400:CDS |
| GGCCAGACTCTGTAATGAGT+GGG | 0.549330 | 3_1:-79165580 | None:intergenic |
| TCCAAAGGAAGGTTGTTCGC+AGG | 0.550682 | 3_1:-79162980 | None:intergenic |
| CTCCTTATCACGCATTCCAA+AGG | 0.556000 | 3_1:-79162995 | None:intergenic |
| GAGATAATGGGTTGAAAGCG+AGG | 0.561102 | 3_1:-79162448 | None:intergenic |
| GAACTAAAATGGAAACAGTA+GGG | 0.568044 | 3_1:-79165926 | None:intergenic |
| AAATCGCTGATGATGTAAGT+AGG | 0.570650 | 3_1:+79165552 | Msa0378400:CDS |
| TGAAGTCTCGGGGAGGAGGA+AGG | 0.572117 | 3_1:-79162358 | None:intergenic |
| TTATGAACAGGAATTGCTTG+AGG | 0.572765 | 3_1:+79165691 | Msa0378400:intron |
| CATTTAACTTACATGTCAAG+TGG | 0.573255 | 3_1:-79163061 | None:intergenic |
| GAATGCATCTGATTTATAGT+GGG | 0.573548 | 3_1:+79163999 | Msa0378400:CDS |
| ATATTACAGAGCACAGGTGA+TGG | 0.577846 | 3_1:+79163323 | Msa0378400:CDS |
| CCACTACCTAAACCACCGGC+TGG | 0.578308 | 3_1:+79162637 | Msa0378400:CDS |
| TCTATGGCGCTAATGACAGC+AGG | 0.580399 | 3_1:-79165716 | None:intergenic |
| AGATAATGGGTTGAAAGCGA+GGG | 0.583691 | 3_1:-79162447 | None:intergenic |
| TTATCACGCATTCCAAAGGA+AGG | 0.584077 | 3_1:-79162991 | None:intergenic |
| TACTGTCTTACCGCTCGTGG+CGG | 0.584467 | 3_1:+79164116 | Msa0378400:CDS |
| TACAGAGCACAGGTGATGGA+TGG | 0.592566 | 3_1:+79163327 | Msa0378400:CDS |
| ATTTAACTTACATGTCAAGT+GGG | 0.593365 | 3_1:-79163060 | None:intergenic |
| AGATGATGGCTTGGCAACTG+AGG | 0.596641 | 3_1:+79164666 | Msa0378400:CDS |
| AGATACTGTCTTACCGCTCG+TGG | 0.600423 | 3_1:+79164113 | Msa0378400:intron |
| TGTCAACACTCACTAAAACA+AGG | 0.601730 | 3_1:-79166095 | None:intergenic |
| GGTTGATTGAGTGTTGAATG+AGG | 0.602908 | 3_1:-79162391 | None:intergenic |
| CTGCATTCAGACCCAACAGT+GGG | 0.604290 | 3_1:-79165963 | None:intergenic |
| TGGCCAGACTCTGTAATGAG+TGG | 0.615058 | 3_1:-79165581 | None:intergenic |
| AACTAACAAGTGTGGCAAGT+CGG | 0.615087 | 3_1:-79162705 | None:intergenic |
| ATACAAATATTACAGAGCAC+AGG | 0.618579 | 3_1:+79163317 | Msa0378400:CDS |
| ATTGAGTGTTGAATGAGGAA+AGG | 0.624056 | 3_1:-79162386 | None:intergenic |
| TCATCTACGACGAAACCAGC+CGG | 0.625755 | 3_1:-79162652 | None:intergenic |
| GAAAACTTACTTCTAAAACA+AGG | 0.631725 | 3_1:-79166137 | None:intergenic |
| TACGCCACTACCTAAACCAC+CGG | 0.633878 | 3_1:+79162633 | Msa0378400:CDS |
| AAACTTACTTCTAAAACAAG+GGG | 0.635311 | 3_1:-79166135 | None:intergenic |
| GATGATGGCTTGGCAACTGA+GGG | 0.636441 | 3_1:+79164667 | Msa0378400:CDS |
| AGAATATTCACAAGTTCTCG+AGG | 0.645145 | 3_1:+79163016 | Msa0378400:CDS |
| TCAACACTCACTAAAACAAG+GGG | 0.657937 | 3_1:-79166093 | None:intergenic |
| GCCAGACTCTGTAATGAGTG+GGG | 0.660010 | 3_1:-79165579 | None:intergenic |
| GGTTTCGTCGTAGATGACAC+TGG | 0.668620 | 3_1:+79162658 | Msa0378400:CDS |
| AAATTCAAAACTAACAAGTG+TGG | 0.670625 | 3_1:-79162713 | None:intergenic |
| AAAGGAAAATTGAAGTCTCG+GGG | 0.671812 | 3_1:-79162368 | None:intergenic |
| CAACAGTGAGTCAAGGAGTG+CGG | 0.672482 | 3_1:-79165865 | None:intergenic |
| AGTGAGAACGATGAGAAGCG+TGG | 0.673004 | 3_1:-79162412 | None:intergenic |
| GGTGGTTTAGGTAGTGGCGT+AGG | 0.681302 | 3_1:-79162631 | None:intergenic |
| GGAAAATTGAAGTCTCGGGG+AGG | 0.715038 | 3_1:-79162365 | None:intergenic |
| GATTAAATCACATACCACCA+AGG | 0.720522 | 3_1:-79165759 | None:intergenic |
| TGCATTCAGACCCAACAGTG+GGG | 0.726533 | 3_1:-79165962 | None:intergenic |
| TCTGCATTCAGACCCAACAG+TGG | 0.735904 | 3_1:-79165964 | None:intergenic |
| TCTACGACGAAACCAGCCGG+TGG | 0.756646 | 3_1:-79162649 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATGAATATTATTGTT+AGG | + | chr3_1:79162952-79162971 | Msa0378400:intron | 10.0% |
| !!! | TGTAAAATATTTTTTTTGTA+GGG | - | chr3_1:79164490-79164509 | None:intergenic | 10.0% |
| !!! | TACAAAAAAAATATTTTACA+GGG | + | chr3_1:79164490-79164509 | Msa0378400:intron | 10.0% |
| !!! | TGTTTTTAATGTTTAATTCA+TGG | + | chr3_1:79163082-79163101 | Msa0378400:intron | 15.0% |
| !!! | TTTATATATCTAAGGTTTTA+GGG | + | chr3_1:79163121-79163140 | Msa0378400:intron | 15.0% |
| !! | TATTTATTAACTTTAGATTG+TGG | + | chr3_1:79163276-79163295 | Msa0378400:intron | 15.0% |
| !!! | ACCTTTTAAGTTTTAAAAAT+AGG | + | chr3_1:79163423-79163442 | Msa0378400:intron | 15.0% |
| !!! | TCCTATTTTTAAAACTTAAA+AGG | - | chr3_1:79163427-79163446 | None:intergenic | 15.0% |
| !!! | TTTATATATTCAAGGTTTTA+GGG | + | chr3_1:79163472-79163491 | Msa0378400:intron | 15.0% |
| !!! | TTCTAAAGTCTATAAAAATA+AGG | + | chr3_1:79163686-79163705 | Msa0378400:intron | 15.0% |
| !!! | CTGTAAAATATTTTTTTTGT+AGG | - | chr3_1:79164491-79164510 | None:intergenic | 15.0% |
| !!! | CTACAAAAAAAATATTTTAC+AGG | + | chr3_1:79164489-79164508 | Msa0378400:intron | 15.0% |
| !! | AAAACATATTAAATTAGATG+GGG | - | chr3_1:79165076-79165095 | None:intergenic | 15.0% |
| !! | GAAAACATATTAAATTAGAT+GGG | - | chr3_1:79165077-79165096 | None:intergenic | 15.0% |
| !! | AGAAAACATATTAAATTAGA+TGG | - | chr3_1:79165078-79165097 | None:intergenic | 15.0% |
| !!! | TAATACTATTTGAAATAAAG+CGG | + | chr3_1:79165126-79165145 | Msa0378400:intron | 15.0% |
| !! | ATGTAGAATTACAACAAAAA+TGG | + | chr3_1:79162306-79162325 | Msa0378400:exon | 20.0% |
| !!! | TCTTATCATTGTTGTTTTTT+GGG | - | chr3_1:79162534-79162553 | None:intergenic | 20.0% |
| !!! | TTCTTATCATTGTTGTTTTT+TGG | - | chr3_1:79162535-79162554 | None:intergenic | 20.0% |
| !!! | ATTATGTATTTTTTCTGTTC+TGG | + | chr3_1:79162742-79162761 | Msa0378400:intron | 20.0% |
| !! | GATTACAGTTTATATATCTA+AGG | + | chr3_1:79163113-79163132 | Msa0378400:intron | 20.0% |
| !!! | GTTTATATATCTAAGGTTTT+AGG | + | chr3_1:79163120-79163139 | Msa0378400:intron | 20.0% |
| !!! | TTATATATCTAAGGTTTTAG+GGG | + | chr3_1:79163122-79163141 | Msa0378400:intron | 20.0% |
| !!! | GTTTATATATTCAAGGTTTT+AGG | + | chr3_1:79163471-79163490 | Msa0378400:intron | 20.0% |
| !!! | TTATATATTCAAGGTTTTAG+GGG | + | chr3_1:79163473-79163492 | Msa0378400:intron | 20.0% |
| !! | AAAGTCTATAAAAATAAGGA+TGG | + | chr3_1:79163690-79163709 | Msa0378400:intron | 20.0% |
| !! | ATGTTATATTCAGATTATTG+TGG | + | chr3_1:79164250-79164269 | Msa0378400:intron | 20.0% |
| !!! | TGTTGAGATTCTATATTTTA+TGG | + | chr3_1:79164307-79164326 | Msa0378400:intron | 20.0% |
| !!! | GTTGAGATTCTATATTTTAT+GGG | + | chr3_1:79164308-79164327 | Msa0378400:intron | 20.0% |
| !! | CAAAAAATTGTATATTTACC+AGG | + | chr3_1:79164519-79164538 | Msa0378400:intron | 20.0% |
| !! | TTATCATACTCGTTATAATT+AGG | + | chr3_1:79164555-79164574 | Msa0378400:intron | 20.0% |
| !! | TATCATACTCGTTATAATTA+GGG | + | chr3_1:79164556-79164575 | Msa0378400:intron | 20.0% |
| !! | AGTTCAAAATTTAATTCTGT+TGG | - | chr3_1:79164955-79164974 | None:intergenic | 20.0% |
| !! | AAACATATTAAATTAGATGG+GGG | - | chr3_1:79165075-79165094 | None:intergenic | 20.0% |
| !! | CAATATAATACTAAATTCAC+AGG | - | chr3_1:79165437-79165456 | None:intergenic | 20.0% |
| !!! | AAAACTTACTTCTAAAACAA+GGG | - | chr3_1:79166139-79166158 | None:intergenic | 20.0% |
| ! | TAGAATTACAACAAAAATGG+CGG | + | chr3_1:79162309-79162328 | Msa0378400:exon | 25.0% |
| ! | AAGAATAACAACAAGAGTAA+TGG | + | chr3_1:79162559-79162578 | Msa0378400:CDS | 25.0% |
| ! | AAATTCAAAACTAACAAGTG+TGG | - | chr3_1:79162716-79162735 | None:intergenic | 25.0% |
| !! | TTTGGTAATTATGATTTGAC+AGG | + | chr3_1:79162876-79162895 | Msa0378400:intron | 25.0% |
| !! | ATTTAACTTACATGTCAAGT+GGG | - | chr3_1:79163063-79163082 | None:intergenic | 25.0% |
| ! | AAAAAAGATTATCAAAACCC+TGG | - | chr3_1:79163251-79163270 | None:intergenic | 25.0% |
| ! | TCATTGCTGACAATTTAAAT+AGG | + | chr3_1:79163400-79163419 | Msa0378400:intron | 25.0% |
| ! | GACAATTTCTTGTATGATTA+CGG | + | chr3_1:79163449-79163468 | Msa0378400:intron | 25.0% |
| ! | GATTACGGTTTATATATTCA+AGG | + | chr3_1:79163464-79163483 | Msa0378400:intron | 25.0% |
| !! | TATAAAAGGAGTGTACAAAA+TGG | - | chr3_1:79163518-79163537 | None:intergenic | 25.0% |
| !! | CACTAAAGTCAAAATTGTTT+TGG | - | chr3_1:79163573-79163592 | None:intergenic | 25.0% |
| !!! | CTTTAGAACTTTATATGCAA+TGG | - | chr3_1:79163674-79163693 | None:intergenic | 25.0% |
| !!! | AAAATAAGGATGGTTTTGTA+AGG | + | chr3_1:79163700-79163719 | Msa0378400:intron | 25.0% |
| ! | GACAACCTAAATTAAAACTT+CGG | + | chr3_1:79163728-79163747 | Msa0378400:intron | 25.0% |
| !!! | ATTTGCCGAAGTTTTAATTT+AGG | - | chr3_1:79163736-79163755 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTCCATGTTTTT+AGG | + | chr3_1:79163916-79163935 | Msa0378400:intron | 25.0% |
| !! | CTAAAAGCTTGAAATTTGTT+TGG | + | chr3_1:79164377-79164396 | Msa0378400:intron | 25.0% |
| !!! | GATAAATATGTTTTTAGTCC+TGG | - | chr3_1:79164540-79164559 | None:intergenic | 25.0% |
| !! | AACATCAGCCATTAAATTTT+GGG | - | chr3_1:79164626-79164645 | None:intergenic | 25.0% |
| !! | AAACATCAGCCATTAAATTT+TGG | - | chr3_1:79164627-79164646 | None:intergenic | 25.0% |
| !!! | GATGTTTTCCATTTTTTAGA+TGG | + | chr3_1:79164640-79164659 | Msa0378400:intron | 25.0% |
| ! | CATCTTTACCATCTAAAAAA+TGG | - | chr3_1:79164651-79164670 | None:intergenic | 25.0% |
| !! | TTTTTAGATGGTAAAGATGA+TGG | + | chr3_1:79164652-79164671 | Msa0378400:intron | 25.0% |
| !! | TAAAAATTAGCTTACTTCGT+TGG | + | chr3_1:79164868-79164887 | Msa0378400:intron | 25.0% |
| !!! | AATACTGATTCATAGAAGAA+AGG | - | chr3_1:79164925-79164944 | None:intergenic | 25.0% |
| !!! | CTCCTACATTTTTTTCTAAT+TGG | + | chr3_1:79165361-79165380 | Msa0378400:intron | 25.0% |
| ! | TGCCAATTAGAAAAAAATGT+AGG | - | chr3_1:79165366-79165385 | None:intergenic | 25.0% |
| !! | AAATCAAATGCATTTTACAG+TGG | + | chr3_1:79165391-79165410 | Msa0378400:intron | 25.0% |
| !! | AATAAATAAACTGTGGATTG+TGG | - | chr3_1:79165463-79165482 | None:intergenic | 25.0% |
| ! | ACAATCCACAGTTTATTTAT+TGG | + | chr3_1:79165462-79165481 | Msa0378400:intron | 25.0% |
| !! | GCTAATTTCATTTTATGAAC+AGG | + | chr3_1:79165679-79165698 | Msa0378400:intron | 25.0% |
| !! | TCCAAAGTAACATTTTTCTT+TGG | + | chr3_1:79165783-79165802 | Msa0378400:intron | 25.0% |
| !! | ACCAAAGAAAAATGTTACTT+TGG | - | chr3_1:79165787-79165806 | None:intergenic | 25.0% |
| !!! | TGTATATTTTAGTATGATCG+AGG | + | chr3_1:79166045-79166064 | Msa0378400:three_prime_UTR | 25.0% |
| !!! | TGGAACAGTTAGTTTTATTA+TGG | + | chr3_1:79166070-79166089 | Msa0378400:three_prime_UTR | 25.0% |
| !!! | AAACTTACTTCTAAAACAAG+GGG | - | chr3_1:79166138-79166157 | None:intergenic | 25.0% |
| !!! | GAAAACTTACTTCTAAAACA+AGG | - | chr3_1:79166140-79166159 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGTTTTTGTTTC+TGG | - | chr3_1:79162521-79162540 | None:intergenic | 30.0% |
| AACAAGAGTAATGGTGAAAT+TGG | + | chr3_1:79162568-79162587 | Msa0378400:CDS | 30.0% | |
| AGAAGAATTGGAAATGGAAT+TGG | - | chr3_1:79162599-79162618 | None:intergenic | 30.0% | |
| TATGAATCGAATTATGCAAG+TGG | + | chr3_1:79162805-79162824 | Msa0378400:intron | 30.0% | |
| TGACGATTTCTGTTATGTTA+AGG | + | chr3_1:79162846-79162865 | Msa0378400:intron | 30.0% | |
| TTATGTTAAGGCACAATCTT+TGG | + | chr3_1:79162858-79162877 | Msa0378400:intron | 30.0% | |
| TTTGACAGGAATATTATTGC+AGG | + | chr3_1:79162890-79162909 | Msa0378400:intron | 30.0% | |
| TTGACAGGAATATTATTGCA+GGG | + | chr3_1:79162891-79162910 | Msa0378400:intron | 30.0% | |
| ! | CATTTAACTTACATGTCAAG+TGG | - | chr3_1:79163064-79163083 | None:intergenic | 30.0% |
| CGGTTTCTAAATCATATGTA+TGG | + | chr3_1:79163154-79163173 | Msa0378400:intron | 30.0% | |
| ! | GATTGTGGAATTTTTACTAC+AGG | + | chr3_1:79163291-79163310 | Msa0378400:intron | 30.0% |
| GTGCTCTGTAATATTTGTAT+AGG | - | chr3_1:79163317-79163336 | None:intergenic | 30.0% | |
| ATACAAATATTACAGAGCAC+AGG | + | chr3_1:79163317-79163336 | Msa0378400:CDS | 30.0% | |
| CTGATACTTCAACTACAAAA+TGG | - | chr3_1:79163367-79163386 | None:intergenic | 30.0% | |
| TTGTACAGCTGTACTATAAA+AGG | - | chr3_1:79163532-79163551 | None:intergenic | 30.0% | |
| AGAACTTTATATGCAATGGT+TGG | - | chr3_1:79163670-79163689 | None:intergenic | 30.0% | |
| ACAACGACTACAAAAACAAA+AGG | - | chr3_1:79163873-79163892 | None:intergenic | 30.0% | |
| AATCAGATGCATTCGTAATT+TGG | - | chr3_1:79163993-79164012 | None:intergenic | 30.0% | |
| GAATGCATCTGATTTATAGT+GGG | + | chr3_1:79163999-79164018 | Msa0378400:CDS | 30.0% | |
| ! | AGATTTTATAGCTCACAACA+TGG | + | chr3_1:79164274-79164293 | Msa0378400:intron | 30.0% |
| TGCTTCATAACCATTTGAAT+TGG | + | chr3_1:79164597-79164616 | Msa0378400:intron | 30.0% | |
| ATTGGACACCCAAAATTTAA+TGG | + | chr3_1:79164615-79164634 | Msa0378400:intron | 30.0% | |
| AGTATACCAATGCAAATTTG+AGG | - | chr3_1:79164831-79164850 | None:intergenic | 30.0% | |
| AAAGGAAAGCAAACATGATT+GGG | - | chr3_1:79164907-79164926 | None:intergenic | 30.0% | |
| ! | ACTATTTGAAATAAAGCGGA+TGG | + | chr3_1:79165130-79165149 | Msa0378400:intron | 30.0% |
| ! | ACTTATTGGAATTTTGTTGC+AGG | + | chr3_1:79165155-79165174 | Msa0378400:intron | 30.0% |
| TCTAACAAACTTGAATATGG+AGG | - | chr3_1:79165245-79165264 | None:intergenic | 30.0% | |
| TGCTCTAACAAACTTGAATA+TGG | - | chr3_1:79165248-79165267 | None:intergenic | 30.0% | |
| ! | CAAATGCATTTTATAGTGAC+CGG | + | chr3_1:79165327-79165346 | Msa0378400:intron | 30.0% |
| CATGTCCAATAAATAAACTG+TGG | - | chr3_1:79165470-79165489 | None:intergenic | 30.0% | |
| GATCATAAATTTATCCTTGC+AGG | + | chr3_1:79165511-79165530 | Msa0378400:intron | 30.0% | |
| TACACTGATCAGAAATACAT+GGG | - | chr3_1:79165624-79165643 | None:intergenic | 30.0% | |
| TTACACTGATCAGAAATACA+TGG | - | chr3_1:79165625-79165644 | None:intergenic | 30.0% | |
| ! | ATGTATTTCTGATCAGTGTA+AGG | + | chr3_1:79165624-79165643 | Msa0378400:intron | 30.0% |
| ! | TGTATTTCTGATCAGTGTAA+GGG | + | chr3_1:79165625-79165644 | Msa0378400:intron | 30.0% |
| AAATGAAATTAGCGACACAA+GGG | - | chr3_1:79165672-79165691 | None:intergenic | 30.0% | |
| AAAATGAAATTAGCGACACA+AGG | - | chr3_1:79165673-79165692 | None:intergenic | 30.0% | |
| AAATTCAGTCTCTTCATCTA+TGG | - | chr3_1:79165735-79165754 | None:intergenic | 30.0% | |
| GAACTAAAATGGAAACAGTA+GGG | - | chr3_1:79165929-79165948 | None:intergenic | 30.0% | |
| AGAACTAAAATGGAAACAGT+AGG | - | chr3_1:79165930-79165949 | None:intergenic | 30.0% | |
| !!! | TTCCATTTTAGTTCTTCATC+AGG | + | chr3_1:79165935-79165954 | Msa0378400:three_prime_UTR | 30.0% |
| ATCCTGATGAAGAACTAAAA+TGG | - | chr3_1:79165940-79165959 | None:intergenic | 30.0% | |
| GCATTATCGACAAAAATTTG+AGG | - | chr3_1:79166239-79166258 | None:intergenic | 30.0% | |
| ! | TTTTGTCGATAATGCATTCA+TGG | + | chr3_1:79166244-79166263 | Msa0378400:three_prime_UTR | 30.0% |
| AAAGGAAAATTGAAGTCTCG+GGG | - | chr3_1:79162371-79162390 | None:intergenic | 35.0% | |
| GAAAGGAAAATTGAAGTCTC+GGG | - | chr3_1:79162372-79162391 | None:intergenic | 35.0% | |
| GGAAAGGAAAATTGAAGTCT+CGG | - | chr3_1:79162373-79162392 | None:intergenic | 35.0% | |
| !! | ATTGAGTGTTGAATGAGGAA+AGG | - | chr3_1:79162389-79162408 | None:intergenic | 35.0% |
| ATGCTTCTTTGGTTGAACAT+TGG | - | chr3_1:79162482-79162501 | None:intergenic | 35.0% | |
| !!! | TTTTGGGTTTTTGTTTCTGG+TGG | - | chr3_1:79162518-79162537 | None:intergenic | 35.0% |
| ! | AATTTGAGGCAGAGAAGAAT+TGG | - | chr3_1:79162611-79162630 | None:intergenic | 35.0% |
| CAAGCTTCTTACTTCTTCAA+TGG | + | chr3_1:79162681-79162700 | Msa0378400:CDS | 35.0% | |
| AGAATATTCACAAGTTCTCG+AGG | + | chr3_1:79163016-79163035 | Msa0378400:CDS | 35.0% | |
| CATCAGAGAGATTTCACATT+GGG | - | chr3_1:79163190-79163209 | None:intergenic | 35.0% | |
| TCATCAGAGAGATTTCACAT+TGG | - | chr3_1:79163191-79163210 | None:intergenic | 35.0% | |
| GTGAAATCTCTCTGATGATT+TGG | + | chr3_1:79163193-79163212 | Msa0378400:intron | 35.0% | |
| !!! | TGGATTTTTAGCGTAGTGTT+GGG | - | chr3_1:79163231-79163250 | None:intergenic | 35.0% |
| AACACTACGCTAAAAATCCA+GGG | + | chr3_1:79163231-79163250 | Msa0378400:intron | 35.0% | |
| TTCGGCAAATCTTCATGAAA+TGG | + | chr3_1:79163746-79163765 | Msa0378400:intron | 35.0% | |
| ! | TTTTCCCATTAGCTAGGTTT+GGG | - | chr3_1:79163849-79163868 | None:intergenic | 35.0% |
| ! | ATTTTCCCATTAGCTAGGTT+TGG | - | chr3_1:79163850-79163869 | None:intergenic | 35.0% |
| ! | AAAGGATTTTCCCATTAGCT+AGG | - | chr3_1:79163855-79163874 | None:intergenic | 35.0% |
| TCGTAACTGACCTAAAAACA+TGG | - | chr3_1:79163929-79163948 | None:intergenic | 35.0% | |
| !!! | ATGTTTTTAGGTCAGTTACG+AGG | + | chr3_1:79163928-79163947 | Msa0378400:intron | 35.0% |
| CGAATGCATCTGATTTATAG+TGG | + | chr3_1:79163998-79164017 | Msa0378400:CDS | 35.0% | |
| CATGAGAAAAGACTGACATA+TGG | - | chr3_1:79164029-79164048 | None:intergenic | 35.0% | |
| !!! | CATCTTTTTTGTTTGTCCTC+TGG | - | chr3_1:79164233-79164252 | None:intergenic | 35.0% |
| AGCGAGGTGAATAAATAGAA+GGG | - | chr3_1:79164425-79164444 | None:intergenic | 35.0% | |
| AAGCGAGGTGAATAAATAGA+AGG | - | chr3_1:79164426-79164445 | None:intergenic | 35.0% | |
| TCTATTTATTCACCTCGCTT+TGG | + | chr3_1:79164426-79164445 | Msa0378400:intron | 35.0% | |
| !! | TTTTGGGTGTCCAATTCAAA+TGG | - | chr3_1:79164610-79164629 | None:intergenic | 35.0% |
| AGAAATCACACACTTCAATC+AGG | + | chr3_1:79164693-79164712 | Msa0378400:CDS | 35.0% | |
| GATTACCTAATTGAACTGTG+AGG | - | chr3_1:79164764-79164783 | None:intergenic | 35.0% | |
| CTACATCCTCAAATTTGCAT+TGG | + | chr3_1:79164822-79164841 | Msa0378400:intron | 35.0% | |
| ! | AATTAGCTTACTTCGTTGGA+TGG | + | chr3_1:79164872-79164891 | Msa0378400:intron | 35.0% |
| GAAAGGAAAGCAAACATGAT+TGG | - | chr3_1:79164908-79164927 | None:intergenic | 35.0% | |
| TAAAGCGGATGGTAACTTAT+TGG | + | chr3_1:79165141-79165160 | Msa0378400:intron | 35.0% | |
| GAGAAAATGTCACAGGTAAA+TGG | - | chr3_1:79165302-79165321 | None:intergenic | 35.0% | |
| CGGTCACTATAAAATGCATT+TGG | - | chr3_1:79165329-79165348 | None:intergenic | 35.0% | |
| !! | TGTAGGAGTACTTCAATTTC+CGG | - | chr3_1:79165349-79165368 | None:intergenic | 35.0% |
| ! | AAATCGCTGATGATGTAAGT+AGG | + | chr3_1:79165552-79165571 | Msa0378400:CDS | 35.0% |
| TTATGAACAGGAATTGCTTG+AGG | + | chr3_1:79165691-79165710 | Msa0378400:intron | 35.0% | |
| AGAGACTGAATTTAATGCCT+TGG | + | chr3_1:79165742-79165761 | Msa0378400:CDS | 35.0% | |
| GATTAAATCACATACCACCA+AGG | - | chr3_1:79165762-79165781 | None:intergenic | 35.0% | |
| GGAAAACATACAGAAATGAG+TGG | - | chr3_1:79165824-79165843 | None:intergenic | 35.0% | |
| !! | ATTTTAGTATGATCGAGGAC+TGG | + | chr3_1:79166050-79166069 | Msa0378400:three_prime_UTR | 35.0% |
| TCAACACTCACTAAAACAAG+GGG | - | chr3_1:79166096-79166115 | None:intergenic | 35.0% | |
| GTCAACACTCACTAAAACAA+GGG | - | chr3_1:79166097-79166116 | None:intergenic | 35.0% | |
| TGTCAACACTCACTAAAACA+AGG | - | chr3_1:79166098-79166117 | None:intergenic | 35.0% | |
| !!! | TTGTTTTAGTGAGTGTTGAC+AGG | + | chr3_1:79166097-79166116 | Msa0378400:three_prime_UTR | 35.0% |
| !! | GGTTGATTGAGTGTTGAATG+AGG | - | chr3_1:79162394-79162413 | None:intergenic | 40.0% |
| !! | AGATAATGGGTTGAAAGCGA+GGG | - | chr3_1:79162450-79162469 | None:intergenic | 40.0% |
| !! | TTGGAAGCGCTAGAGATAAT+GGG | - | chr3_1:79162463-79162482 | None:intergenic | 40.0% |
| !! | ATTGGAAGCGCTAGAGATAA+TGG | - | chr3_1:79162464-79162483 | None:intergenic | 40.0% |
| GAAGAAGGAGAATGCTTCTT+TGG | - | chr3_1:79162493-79162512 | None:intergenic | 40.0% | |
| !! | TTGTTTCTGGTGGATGAAGA+AGG | - | chr3_1:79162508-79162527 | None:intergenic | 40.0% |
| AGGCAGAGAAGAATTGGAAA+TGG | - | chr3_1:79162605-79162624 | None:intergenic | 40.0% | |
| AACTAACAAGTGTGGCAAGT+CGG | - | chr3_1:79162708-79162727 | None:intergenic | 40.0% | |
| TTATCACGCATTCCAAAGGA+AGG | - | chr3_1:79162994-79163013 | None:intergenic | 40.0% | |
| !! | TTCCTTTGGAATGCGTGATA+AGG | + | chr3_1:79162993-79163012 | Msa0378400:CDS | 40.0% |
| !!! | CTGGATTTTTAGCGTAGTGT+TGG | - | chr3_1:79163232-79163251 | None:intergenic | 40.0% |
| CAACACTACGCTAAAAATCC+AGG | + | chr3_1:79163230-79163249 | Msa0378400:intron | 40.0% | |
| ATATTACAGAGCACAGGTGA+TGG | + | chr3_1:79163323-79163342 | Msa0378400:CDS | 40.0% | |
| AGCATGGCATAGACATAGTA+GGG | - | chr3_1:79163641-79163660 | None:intergenic | 40.0% | |
| AAGCATGGCATAGACATAGT+AGG | - | chr3_1:79163642-79163661 | None:intergenic | 40.0% | |
| ATGTACCCAAACCTAGCTAA+TGG | + | chr3_1:79163841-79163860 | Msa0378400:intron | 40.0% | |
| TGTACCCAAACCTAGCTAAT+GGG | + | chr3_1:79163842-79163861 | Msa0378400:intron | 40.0% | |
| ! | GACATCTTTGACTTTCATGC+AGG | + | chr3_1:79164158-79164177 | Msa0378400:CDS | 40.0% |
| GTTCTAACTTCTAACACCAG+AGG | + | chr3_1:79164214-79164233 | Msa0378400:intron | 40.0% | |
| GGTGAATAAATAGAAGGGAC+AGG | - | chr3_1:79164420-79164439 | None:intergenic | 40.0% | |
| ! | AGATGGTAAAGATGATGGCT+TGG | + | chr3_1:79164657-79164676 | Msa0378400:intron | 40.0% |
| ACAAAAAGCAGTGGATCAGA+TGG | - | chr3_1:79165207-79165226 | None:intergenic | 40.0% | |
| CTATTGCCTCTGTTAAACAG+TGG | + | chr3_1:79165269-79165288 | Msa0378400:intron | 40.0% | |
| TGGTAGAGAGAAAATGTCAC+AGG | - | chr3_1:79165309-79165328 | None:intergenic | 40.0% | |
| !! | TATGATCAGCTCTAGAACAC+TGG | - | chr3_1:79165498-79165517 | None:intergenic | 40.0% |
| TTATCCTTGCAGGATCAGAA+TGG | + | chr3_1:79165521-79165540 | Msa0378400:intron | 40.0% | |
| GACTGAATTTAATGCCTTGG+TGG | + | chr3_1:79165745-79165764 | Msa0378400:CDS | 40.0% | |
| ! | GTATGTTTTCCCTTACACAC+AGG | + | chr3_1:79165833-79165852 | Msa0378400:intron | 40.0% |
| ! | TTTTACCCAACAGTGAGTCA+AGG | - | chr3_1:79165875-79165894 | None:intergenic | 40.0% |
| !! | GTCTGAATGCAGAGTTTTGT+GGG | + | chr3_1:79165974-79165993 | Msa0378400:three_prime_UTR | 40.0% |
| !! | GAGATAATGGGTTGAAAGCG+AGG | - | chr3_1:79162451-79162470 | None:intergenic | 45.0% |
| TCGAATTATGCAAGTGGCTG+TGG | + | chr3_1:79162811-79162830 | Msa0378400:intron | 45.0% | |
| CTCCTTATCACGCATTCCAA+AGG | - | chr3_1:79162998-79163017 | None:intergenic | 45.0% | |
| !!! | GGTTTTAGGGGTGAAAGAAG+TGG | + | chr3_1:79163485-79163504 | Msa0378400:intron | 45.0% |
| CGCATCCTCACAGTTCAATT+AGG | + | chr3_1:79164756-79164775 | Msa0378400:intron | 45.0% | |
| TTAGATGGGGGAAAATGCAC+AGG | - | chr3_1:79165063-79165082 | None:intergenic | 45.0% | |
| TTTGCAGCGACAAAAAGCAG+TGG | - | chr3_1:79165216-79165235 | None:intergenic | 45.0% | |
| !!! | ACTGCTTTTTGTCGCTGCAA+AGG | + | chr3_1:79165215-79165234 | Msa0378400:CDS | 45.0% |
| GTGATGCCACTGTTTAACAG+AGG | - | chr3_1:79165278-79165297 | None:intergenic | 45.0% | |
| CATTCCATTCTGATCCTGCA+AGG | - | chr3_1:79165528-79165547 | None:intergenic | 45.0% | |
| GGGAGCTGAGAAGGAAATAA+TGG | - | chr3_1:79165604-79165623 | None:intergenic | 45.0% | |
| GAAATACATGGGAGCTGAGA+AGG | - | chr3_1:79165613-79165632 | None:intergenic | 45.0% | |
| ! | TGTTTTCCCTTACACACAGG+AGG | + | chr3_1:79165836-79165855 | Msa0378400:intron | 45.0% |
| CTTCTTCCTCCTGTGTGTAA+GGG | - | chr3_1:79165845-79165864 | None:intergenic | 45.0% | |
| ! | GGTCTGAATGCAGAGTTTTG+TGG | + | chr3_1:79165973-79165992 | Msa0378400:three_prime_UTR | 45.0% |
| AAATTGAAGTCTCGGGGAGG+AGG | - | chr3_1:79162365-79162384 | None:intergenic | 50.0% | |
| GGAAAATTGAAGTCTCGGGG+AGG | - | chr3_1:79162368-79162387 | None:intergenic | 50.0% | |
| AGTGAGAACGATGAGAAGCG+TGG | - | chr3_1:79162415-79162434 | None:intergenic | 50.0% | |
| ! | GGTAGTGGCGTAGGAATTTG+AGG | - | chr3_1:79162625-79162644 | None:intergenic | 50.0% |
| TACGCCACTACCTAAACCAC+CGG | + | chr3_1:79162633-79162652 | Msa0378400:CDS | 50.0% | |
| TCATCTACGACGAAACCAGC+CGG | - | chr3_1:79162655-79162674 | None:intergenic | 50.0% | |
| GGTTTCGTCGTAGATGACAC+TGG | + | chr3_1:79162658-79162677 | Msa0378400:CDS | 50.0% | |
| TCCTGCGAACAACCTTCCTT+TGG | + | chr3_1:79162979-79162998 | Msa0378400:CDS | 50.0% | |
| TCCAAAGGAAGGTTGTTCGC+AGG | - | chr3_1:79162983-79163002 | None:intergenic | 50.0% | |
| !!! | GGTTTTAGGGGTGAAAGACG+CGG | + | chr3_1:79163134-79163153 | Msa0378400:intron | 50.0% |
| !! | TACAGAGCACAGGTGATGGA+TGG | + | chr3_1:79163327-79163346 | Msa0378400:CDS | 50.0% |
| ! | CAATGGTTGGCTGTGAAGCA+TGG | - | chr3_1:79163657-79163676 | None:intergenic | 50.0% |
| GCAAGTGCAAAAGAAGCAGC+AGG | - | chr3_1:79163971-79163990 | None:intergenic | 50.0% | |
| AGATACTGTCTTACCGCTCG+TGG | + | chr3_1:79164113-79164132 | Msa0378400:intron | 50.0% | |
| GTAACAAAAACCGCCACGAG+CGG | - | chr3_1:79164129-79164148 | None:intergenic | 50.0% | |
| ATCGCCATCAGAGAGTTCAG+AGG | - | chr3_1:79164463-79164482 | None:intergenic | 50.0% | |
| ! | AGATGATGGCTTGGCAACTG+AGG | + | chr3_1:79164666-79164685 | Msa0378400:CDS | 50.0% |
| ! | GATGATGGCTTGGCAACTGA+GGG | + | chr3_1:79164667-79164686 | Msa0378400:CDS | 50.0% |
| TCCCCACTCATTACAGAGTC+TGG | + | chr3_1:79165578-79165597 | Msa0378400:CDS | 50.0% | |
| GCCAGACTCTGTAATGAGTG+GGG | - | chr3_1:79165582-79165601 | None:intergenic | 50.0% | |
| GGCCAGACTCTGTAATGAGT+GGG | - | chr3_1:79165583-79165602 | None:intergenic | 50.0% | |
| TGGCCAGACTCTGTAATGAG+TGG | - | chr3_1:79165584-79165603 | None:intergenic | 50.0% | |
| TCTATGGCGCTAATGACAGC+AGG | - | chr3_1:79165719-79165738 | None:intergenic | 50.0% | |
| GCTTCTTCCTCCTGTGTGTA+AGG | - | chr3_1:79165846-79165865 | None:intergenic | 50.0% | |
| CAACAGTGAGTCAAGGAGTG+CGG | - | chr3_1:79165868-79165887 | None:intergenic | 50.0% | |
| GCACTCCTTGACTCACTGTT+GGG | + | chr3_1:79165867-79165886 | Msa0378400:CDS | 50.0% | |
| ATCAGGATTGCCCCACTGTT+GGG | + | chr3_1:79165952-79165971 | Msa0378400:three_prime_UTR | 50.0% | |
| TGCATTCAGACCCAACAGTG+GGG | - | chr3_1:79165965-79165984 | None:intergenic | 50.0% | |
| CTGCATTCAGACCCAACAGT+GGG | - | chr3_1:79165966-79165985 | None:intergenic | 50.0% | |
| TCTGCATTCAGACCCAACAG+TGG | - | chr3_1:79165967-79165986 | None:intergenic | 50.0% | |
| ! | GGTGGTTTAGGTAGTGGCGT+AGG | - | chr3_1:79162634-79162653 | None:intergenic | 55.0% |
| ACGAAACCAGCCGGTGGTTT+AGG | - | chr3_1:79162646-79162665 | None:intergenic | 55.0% | |
| TACTGTCTTACCGCTCGTGG+CGG | + | chr3_1:79164116-79164135 | Msa0378400:CDS | 55.0% | |
| ! | AGAAGGGACAGGCTCTGACT+AGG | - | chr3_1:79164409-79164428 | None:intergenic | 55.0% |
| GTGGCTTCGAAACCAAAGCG+AGG | - | chr3_1:79164441-79164460 | None:intergenic | 55.0% | |
| GCCACCTCTGAACTCTCTGA+TGG | + | chr3_1:79164456-79164475 | Msa0378400:intron | 55.0% | |
| GCCATCAGAGAGTTCAGAGG+TGG | - | chr3_1:79164460-79164479 | None:intergenic | 55.0% | |
| CGCACTCCTTGACTCACTGT+TGG | + | chr3_1:79165866-79165885 | Msa0378400:CDS | 55.0% | |
| CATCAGGATTGCCCCACTGT+TGG | + | chr3_1:79165951-79165970 | Msa0378400:three_prime_UTR | 55.0% | |
| TGAAGTCTCGGGGAGGAGGA+AGG | - | chr3_1:79162361-79162380 | None:intergenic | 60.0% | |
| CCAGCCGGTGGTTTAGGTAG+TGG | - | chr3_1:79162640-79162659 | None:intergenic | 60.0% | |
| CCACTACCTAAACCACCGGC+TGG | + | chr3_1:79162637-79162656 | Msa0378400:CDS | 60.0% | |
| TCTACGACGAAACCAGCCGG+TGG | - | chr3_1:79162652-79162671 | None:intergenic | 60.0% | |
| ! | GCGTAGTGTTGGGTCACGAG+AGG | - | chr3_1:79163221-79163240 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79162296 | 79166298 | 79162296 | ID=Msa0378400;Name=Msa0378400 |
| chr3_1 | mRNA | 79162296 | 79166298 | 79162296 | ID=Msa0378400-mRNA-1;Parent=Msa0378400;Name=Msa0378400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=29|0.88|0.9|1|1|1|10|399|334 |
| chr3_1 | exon | 79162296 | 79162720 | 79162296 | ID=Msa0378400-mRNA-1:exon:19294;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79162974 | 79163071 | 79162974 | ID=Msa0378400-mRNA-1:exon:19295;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79163313 | 79163355 | 79163313 | ID=Msa0378400-mRNA-1:exon:19296;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79163938 | 79164020 | 79163938 | ID=Msa0378400-mRNA-1:exon:19297;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79164115 | 79164179 | 79164115 | ID=Msa0378400-mRNA-1:exon:19298;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79164659 | 79164714 | 79164659 | ID=Msa0378400-mRNA-1:exon:19299;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79165177 | 79165236 | 79165177 | ID=Msa0378400-mRNA-1:exon:19300;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79165533 | 79165625 | 79165533 | ID=Msa0378400-mRNA-1:exon:19301;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79165701 | 79165766 | 79165701 | ID=Msa0378400-mRNA-1:exon:19302;Parent=Msa0378400-mRNA-1 |
| chr3_1 | exon | 79165855 | 79166298 | 79165855 | ID=Msa0378400-mRNA-1:exon:19303;Parent=Msa0378400-mRNA-1 |
| chr3_1 | five_prime_UTR | 79162296 | 79162324 | 79162296 | ID=Msa0378400-mRNA-1:five_prime_utr;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79162325 | 79162720 | 79162325 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79162974 | 79163071 | 79162974 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79163313 | 79163355 | 79163313 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79163938 | 79164020 | 79163938 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79164115 | 79164179 | 79164115 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79164659 | 79164714 | 79164659 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79165177 | 79165236 | 79165177 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79165533 | 79165625 | 79165533 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79165701 | 79165766 | 79165701 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | CDS | 79165855 | 79165899 | 79165855 | ID=Msa0378400-mRNA-1:cds;Parent=Msa0378400-mRNA-1 |
| chr3_1 | three_prime_UTR | 79165900 | 79166298 | 79165900 | ID=Msa0378400-mRNA-1:three_prime_utr;Parent=Msa0378400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
