AlfalfaGEDB | Msa0791170

M. sativa cultivar zhongmu-4 / Msa0791170

KEGG: K03116
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377
PFAM: PF02416.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791170	XP_003592219.1	90.323	186	3	2	1	171	1	186	2.09e-114	336

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791170	sp\|Q94G16\|TATB_PEA	77.049	183	27	3	4	171	6	188	6.21e-95	279

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791170	G7IEN7	90.323	186	3	2	1	171	1	186	9.99e-115	336

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0791170	0.836333	9.951552e-57	-8.615850e-47
Msa0001040	Msa0791170	0.812331	4.474269e-51	-8.615850e-47
Msa0001420	Msa0791170	0.879821	9.108133e-70	-8.615850e-47
Msa0001510	Msa0791170	0.897732	1.056749e-76	-8.615850e-47
Msa0001540	Msa0791170	0.906382	1.575114e-80	-8.615850e-47
Msa0002060	Msa0791170	0.829604	4.689596e-55	-8.615850e-47
Msa0002110	Msa0791170	0.801469	8.872039e-49	-8.615850e-47
Msa0002690	Msa0791170	0.889844	1.682670e-73	-8.615850e-47
Msa0002700	Msa0791170	0.889706	1.905626e-73	-8.615850e-47
Msa0003340	Msa0791170	0.814204	1.735729e-51	-8.615850e-47

Showing 1 to 10 of 2,422 entries

Previous1 2 3 4 5…243Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791170	MtrunA17_Chr1g0202801	90.323	186	3	2	1	171	1	186	1.92e-118	336
Msa0791170	MtrunA17_Chr7g0274161	47.619	63	26	1	71	133	59	114	7.19e-12	60.5
Msa0791170	MtrunA17_Chr1g0190751	42.500	80	43	2	71	147	59	138	3.12e-11	58.5

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791170	AT5G52440.1	54.974	191	59	5	2	167	5	193	1.44e-54	174

Showing 1 to 1 of 1 entries

Previous1Next

Find 49 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGGTGACCCAATGAA+TGG	0.530058	5_3:-2007834	None:intergenic
AACAGCAGTCTGAGAACCAT+TGG	0.563019	5_3:-2010556	None:intergenic
AACCTGGATCTCTCTAATGG+TGG	0.586086	5_3:-2010306	None:intergenic
AAGACCAATCTCCCGTTCAA+GGG	0.614541	5_3:-2010451	None:intergenic
AAGAGTACGTATTCTGAGTT+GGG	0.445136	5_3:-2010488	None:intergenic
AATGCAGGTTGCTCGAAATC+TGG	0.293696	5_3:+2010259	Msa0791170:intron
AATTTAAGAGTACCCTTGAA+CGG	0.550071	5_3:+2010439	Msa0791170:CDS
ACCCACCATTAGAGAGATCC+AGG	0.479518	5_3:+2010304	Msa0791170:CDS
ACCCCAATTACAAGAGCTTC+AGG	0.344512	5_3:-2008062	None:intergenic
ACCTGGATCTCTCTAATGGT+GGG	0.582822	5_3:-2010305	None:intergenic

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTATTATGTCCTAAACTAGG+AGG	+	chr5_3:2007775-2007794	Msa0791170:CDS	30.0%
CATACTATTTCACTTTGTCA+AGG	+	chr5_3:2008256-2008275	Msa0791170:intron	30.0%
ACTTTCTGATTTATGTGGTT+CGG	+	chr5_3:2008312-2008331	Msa0791170:intron	30.0%
CTTATTTCGATAGGTTCTTT+AGG	-	chr5_3:2008474-2008493	None:intergenic	30.0%
TGCTTAAAATGCTATAAGAC+CGG	-	chr5_3:2008628-2008647	None:intergenic	30.0%
CACTTTATATAGTGATCCTA+AGG	-	chr5_3:2008755-2008774	None:intergenic	30.0%
AATTGGTTGAATGTTGTTCA+AGG	-	chr5_3:2008883-2008902	None:intergenic	30.0%
TCCAATTATATCTAACACCA+AGG	+	chr5_3:2008913-2008932	Msa0791170:intron	30.0%
TGATACACAAACAAGCTATA+GGG	-	chr5_3:2009132-2009151	None:intergenic	30.0%
TTGATACACAAACAAGCTAT+AGG	-	chr5_3:2009133-2009152	None:intergenic	30.0%

Showing 1 to 10 of 195 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	2007739	2010802	2007739	ID=Msa0791170;Name=Msa0791170
chr5_3	mRNA	2007739	2010802	2007739	ID=Msa0791170-mRNA-1;Parent=Msa0791170;Name=Msa0791170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.66\|0.5\|1\|0.66\|0.5\|4\|170\|186
chr5_3	exon	2007739	2007918	2007739	ID=Msa0791170-mRNA-1:exon:817;Parent=Msa0791170-mRNA-1
chr5_3	exon	2008011	2008124	2008011	ID=Msa0791170-mRNA-1:exon:818;Parent=Msa0791170-mRNA-1
chr5_3	exon	2010266	2010325	2010266	ID=Msa0791170-mRNA-1:exon:819;Parent=Msa0791170-mRNA-1
chr5_3	exon	2010426	2010802	2010426	ID=Msa0791170-mRNA-1:exon:820;Parent=Msa0791170-mRNA-1
chr5_3	CDS	2007739	2007918	2007739	ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3	CDS	2008011	2008124	2008011	ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3	CDS	2010266	2010325	2010266	ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3	CDS	2010426	2010632	2010426	ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3	three_prime_UTR	2010633	2010802	2010633	ID=Msa0791170-mRNA-1:three_prime_utr;Parent=Msa0791170-mRNA-1

Gene Sequence

>Msa0791170

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAACCATTTTTTCGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAGTGAGTTATCCAGCATCTATTTTATTTTTATCTGCGGGGCAGTTTAG

Protein sequence

>Msa0791170

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKNHFFGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPSELSSIYFIFICGAV*