AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0791170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791170 MtrunA17_Chr1g0202801 90.323 186 3 2 1 171 1 186 1.92e-118 336
Msa0791170 MtrunA17_Chr7g0274161 47.619 63 26 1 71 133 59 114 7.19e-12 60.5
Msa0791170 MtrunA17_Chr1g0190751 42.500 80 43 2 71 147 59 138 3.12e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791170 AT5G52440.1 54.974 191 59 5 2 167 5 193 1.44e-54 174

Find 49 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCCTGAAGCTCTTGTAAT+TGG 0.190403 5_3:+2008059 Msa0791170:CDS
TGGTTTATGCGTCTCTCTTT+GGG 0.224648 5_3:+2008030 Msa0791170:CDS
TTGGAATGGTTTGAAGAATC+TGG 0.237555 5_3:+2007864 Msa0791170:CDS
GTGGTTTATGCGTCTCTCTT+TGG 0.244905 5_3:+2008029 Msa0791170:CDS
CCCCTGAAGCTCTTGTAATT+GGG 0.280358 5_3:+2008060 Msa0791170:CDS
AATGCAGGTTGCTCGAAATC+TGG 0.293696 5_3:+2010259 Msa0791170:intron
GAACATGTTCCTCCTAGTTT+AGG 0.340162 5_3:-2007784 None:intergenic
ACCCCAATTACAAGAGCTTC+AGG 0.344512 5_3:-2008062 None:intergenic
CTGACCTCAGCAAGACCTTT+AGG 0.358065 5_3:-2008107 None:intergenic
ACTAACCTGGATCTCTCTAA+TGG 0.439471 5_3:-2010309 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 5_3:+2010440 Msa0791170:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 5_3:-2010488 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 5_3:+2010447 Msa0791170:CDS
GAAGAGTACGTATTCTGAGT+TGG 0.463633 5_3:-2010489 None:intergenic
TGGAATGGTTTGAAGAATCT+GGG 0.464571 5_3:+2007865 Msa0791170:CDS
TATGCGTCTCTCTTTGGGGT+GGG 0.475454 5_3:+2008035 Msa0791170:CDS
TTCTTCTTCAACAGATGGTA+TGG 0.478180 5_3:-2010768 None:intergenic
ACCCACCATTAGAGAGATCC+AGG 0.479518 5_3:+2010304 Msa0791170:CDS
GATAGAAAGGGTCGGTGTAA+AGG 0.500755 5_3:+2008002 Msa0791170:intron
CCCTGAAGCTCTTGTAATTG+GGG 0.510021 5_3:+2008061 Msa0791170:CDS
CAAGACCAATCTCCCGTTCA+AGG 0.514273 5_3:-2010452 None:intergenic
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 5_3:+2010260 Msa0791170:intron
CCCCAATTACAAGAGCTTCA+GGG 0.521995 5_3:-2008061 None:intergenic
CCCAATTACAAGAGCTTCAG+GGG 0.523540 5_3:-2008060 None:intergenic
TATTTGATAAAATGCATATG+AGG 0.523669 5_3:-2010660 None:intergenic
AAAGACGGTGACCCAATGAA+TGG 0.530058 5_3:-2007834 None:intergenic
CTAAATTCTTCTTCAACAGA+TGG 0.539946 5_3:-2010773 None:intergenic
CTGAGAACCATTGGTACTAT+CGG 0.543826 5_3:-2010547 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 5_3:+2010439 Msa0791170:CDS
TAGATGCTGGATAACTCACT+AGG 0.558919 5_3:-2010582 None:intergenic
AACAGCAGTCTGAGAACCAT+TGG 0.563019 5_3:-2010556 None:intergenic
GGTTTATGCGTCTCTCTTTG+GGG 0.565629 5_3:+2008031 Msa0791170:CDS
TTATGCGTCTCTCTTTGGGG+TGG 0.571962 5_3:+2008034 Msa0791170:CDS
TTGGTACTATCGGTGGATAG+TGG 0.581780 5_3:-2010537 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 5_3:-2010305 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 5_3:-2010306 None:intergenic
TGGTCCTAAAGGTCTTGCTG+AGG 0.586660 5_3:+2008103 Msa0791170:CDS
ATGTTATTATGTCCTAAACT+AGG 0.587873 5_3:+2007772 Msa0791170:CDS
AGATTCTTCAAACCATTCCA+AGG 0.595262 5_3:-2007862 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 5_3:-2010511 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 5_3:-2010451 None:intergenic
AGATGCTGGATAACTCACTA+GGG 0.619034 5_3:-2010581 None:intergenic
CATTCCAAGGAGAGAAAAGA+CGG 0.620612 5_3:-2007849 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 5_3:+2010540 Msa0791170:CDS
AGAACCATTGGTACTATCGG+TGG 0.637633 5_3:-2010544 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 5_3:-2010526 None:intergenic
TTATTATGTCCTAAACTAGG+AGG 0.663899 5_3:+2007775 Msa0791170:CDS
TAGTTTAGGACATAATAACA+TGG 0.692470 5_3:-2007770 None:intergenic
GGGTCGGTGTAAAGGTAACG+TGG 0.723610 5_3:+2008010 Msa0791170:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGGATATTAATTAGAAT+TGG - chr5_3:2008900-2008919 None:intergenic 15.0%
!!! TATTTTGTAAAATGTATAGA+GGG - chr5_3:2009926-2009945 None:intergenic 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG + chr5_3:2010600-2010619 Msa0791170:CDS 15.0%
!!! AATACGAAAAAATGGTTTTT+GGG - chr5_3:2007904-2007923 None:intergenic 20.0%
!!! TAATACGAAAAAATGGTTTT+TGG - chr5_3:2007905-2007924 None:intergenic 20.0%
!!! AAACCATTTTTTCGTATTAT+AGG + chr5_3:2007906-2007925 Msa0791170:intron 20.0%
!! ATACCTATAATACGAAAAAA+TGG - chr5_3:2007912-2007931 None:intergenic 20.0%
!! CAATTTAATCTGAATTACAT+AGG - chr5_3:2008175-2008194 None:intergenic 20.0%
!! AATGAATTATGAACACTTTA+AGG + chr5_3:2008811-2008830 Msa0791170:intron 20.0%
!! TTTATATCAATGTTCATTGA+AGG - chr5_3:2009096-2009115 None:intergenic 20.0%
!!! ACATAAAAGTAACAACTTTT+GGG - chr5_3:2009559-2009578 None:intergenic 20.0%
!!! AACATAAAAGTAACAACTTT+TGG - chr5_3:2009560-2009579 None:intergenic 20.0%
!! AATGTATAATAATACTTTCG+TGG + chr5_3:2009790-2009809 Msa0791170:intron 20.0%
!! GTCAAAAAAACAAAGATATA+CGG - chr5_3:2009878-2009897 None:intergenic 20.0%
!!! TGTTTTTTTGACATTGTTTA+AGG + chr5_3:2009886-2009905 Msa0791170:intron 20.0%
!!! GTTTTTTTGACATTGTTTAA+GGG + chr5_3:2009887-2009906 Msa0791170:intron 20.0%
!!! CTATTTTGTAAAATGTATAG+AGG - chr5_3:2009927-2009946 None:intergenic 20.0%
!! TCTCATTCAAAAATAATCAT+TGG - chr5_3:2010043-2010062 None:intergenic 20.0%
!!! AAAATAATTGTTGTTGCTAT+TGG + chr5_3:2010130-2010149 Msa0791170:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG - chr5_3:2010598-2010617 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG + chr5_3:2010601-2010620 Msa0791170:CDS 20.0%
!! TATTTGATAAAATGCATATG+AGG - chr5_3:2010663-2010682 None:intergenic 20.0%
!! TAGTTTAGGACATAATAACA+TGG - chr5_3:2007773-2007792 None:intergenic 25.0%
! ATGTTATTATGTCCTAAACT+AGG + chr5_3:2007772-2007791 Msa0791170:CDS 25.0%
! TGAATGGAGATAAAAATGTT+GGG - chr5_3:2007821-2007840 None:intergenic 25.0%
! ATGAATGGAGATAAAAATGT+TGG - chr5_3:2007822-2007841 None:intergenic 25.0%
!! ACATTTTTATCTCCATTCAT+TGG + chr5_3:2007822-2007841 Msa0791170:CDS 25.0%
!! CATTTTTATCTCCATTCATT+GGG + chr5_3:2007823-2007842 Msa0791170:CDS 25.0%
!! TCAACTTCTATTATCTCTTT+TGG + chr5_3:2007943-2007962 Msa0791170:intron 25.0%
!! CAACTTCTATTATCTCTTTT+GGG + chr5_3:2007944-2007963 Msa0791170:intron 25.0%
!! TACTCATTTTGTAGATAGAA+AGG + chr5_3:2007989-2008008 Msa0791170:intron 25.0%
!! ACTCATTTTGTAGATAGAAA+GGG + chr5_3:2007990-2008009 Msa0791170:intron 25.0%
! TTATCACTTTCTGATTTATG+TGG + chr5_3:2008307-2008326 Msa0791170:intron 25.0%
! TGATTTCAACTTATTTCGAT+AGG - chr5_3:2008483-2008502 None:intergenic 25.0%
! TCTAATTGATATCTAACACT+TGG - chr5_3:2008663-2008682 None:intergenic 25.0%
! AATTAGTTGAATACTGTTTG+AGG + chr5_3:2008682-2008701 Msa0791170:intron 25.0%
! AGTTGTCATTAGTTATTAGT+TGG - chr5_3:2008848-2008867 None:intergenic 25.0%
! ACATGTTATTGACATTAGAA+AGG + chr5_3:2009007-2009026 Msa0791170:intron 25.0%
! ATTGTGAATATTTACGTTTG+TGG + chr5_3:2009207-2009226 Msa0791170:intron 25.0%
!!! TGTTAATTTTCAAGCAGATT+TGG - chr5_3:2009312-2009331 None:intergenic 25.0%
! AGAAAATATGAACTATGAAG+CGG - chr5_3:2009360-2009379 None:intergenic 25.0%
! GAATATGTATATTCATACAG+TGG + chr5_3:2009608-2009627 Msa0791170:intron 25.0%
! TGGACATGAAATTAATAACT+GGG + chr5_3:2009628-2009647 Msa0791170:intron 25.0%
! ATGCTACAAATAAGTTTGAA+AGG + chr5_3:2009698-2009717 Msa0791170:intron 25.0%
! TGCTACAAATAAGTTTGAAA+GGG + chr5_3:2009699-2009718 Msa0791170:intron 25.0%
! ACATTTAGTATTACGAATGA+AGG - chr5_3:2009775-2009794 None:intergenic 25.0%
! ATTATTTATACCCTGAATGT+CGG - chr5_3:2010007-2010026 None:intergenic 25.0%
! TGAGATTAACTTTAGATAGT+TGG + chr5_3:2010058-2010077 Msa0791170:intron 25.0%
! AACAAATTTAATCTACACTC+TGG - chr5_3:2010347-2010366 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG + chr5_3:2010602-2010621 Msa0791170:CDS 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG - chr5_3:2010734-2010753 None:intergenic 25.0%
TTATTATGTCCTAAACTAGG+AGG + chr5_3:2007775-2007794 Msa0791170:CDS 30.0%
! ATTTTGTAGATAGAAAGGGT+CGG + chr5_3:2007994-2008013 Msa0791170:intron 30.0%
!!! GTTGTTGCTTTGTTAGTTTT+TGG + chr5_3:2008083-2008102 Msa0791170:CDS 30.0%
!!! TTGTTAGTTTTTGGTCCTAA+AGG + chr5_3:2008092-2008111 Msa0791170:CDS 30.0%
CATACTATTTCACTTTGTCA+AGG + chr5_3:2008256-2008275 Msa0791170:intron 30.0%
ACTTTCTGATTTATGTGGTT+CGG + chr5_3:2008312-2008331 Msa0791170:intron 30.0%
CTTATTTCGATAGGTTCTTT+AGG - chr5_3:2008474-2008493 None:intergenic 30.0%
TGCTTAAAATGCTATAAGAC+CGG - chr5_3:2008628-2008647 None:intergenic 30.0%
CACTTTATATAGTGATCCTA+AGG - chr5_3:2008755-2008774 None:intergenic 30.0%
AATTGGTTGAATGTTGTTCA+AGG - chr5_3:2008883-2008902 None:intergenic 30.0%
TCCAATTATATCTAACACCA+AGG + chr5_3:2008913-2008932 Msa0791170:intron 30.0%
!! ACCTTGGTGTTAGATATAAT+TGG - chr5_3:2008917-2008936 None:intergenic 30.0%
!! ACAATTCTAGAGTGTTTAGT+TGG + chr5_3:2009033-2009052 Msa0791170:intron 30.0%
TGATACACAAACAAGCTATA+GGG - chr5_3:2009132-2009151 None:intergenic 30.0%
TTGATACACAAACAAGCTAT+AGG - chr5_3:2009133-2009152 None:intergenic 30.0%
! TGAATTTATCTGTTGCTTAG+TGG - chr5_3:2009390-2009409 None:intergenic 30.0%
ACTAAGCAACAGATAAATTC+AGG + chr5_3:2009389-2009408 Msa0791170:intron 30.0%
GTGGACATGAAATTAATAAC+TGG + chr5_3:2009627-2009646 Msa0791170:intron 30.0%
! GACATTTTATTCAATTGCCA+AGG - chr5_3:2009677-2009696 None:intergenic 30.0%
GCTACAAATAAGTTTGAAAG+GGG + chr5_3:2009700-2009719 Msa0791170:intron 30.0%
AAGCTTAGTATCATGAATGA+AGG - chr5_3:2009844-2009863 None:intergenic 30.0%
CAAAGATATACGGATATGTT+CGG - chr5_3:2009868-2009887 None:intergenic 30.0%
TTTGACATTGTTTAAGGGAA+AGG + chr5_3:2009892-2009911 Msa0791170:intron 30.0%
ATTGTTTAAGGGAAAGGATA+AGG + chr5_3:2009898-2009917 Msa0791170:intron 30.0%
TGTATCTAATAAGCCTCAAA+GGG - chr5_3:2010102-2010121 None:intergenic 30.0%
ATGTATCTAATAAGCCTCAA+AGG - chr5_3:2010103-2010122 None:intergenic 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG - chr5_3:2010325-2010344 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG + chr5_3:2010439-2010458 Msa0791170:CDS 30.0%
GAAAAATAGCATGCATATGA+TGG - chr5_3:2010697-2010716 None:intergenic 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG - chr5_3:2010735-2010754 None:intergenic 30.0%
CTAAATTCTTCTTCAACAGA+TGG - chr5_3:2010776-2010795 None:intergenic 30.0%
AGATTCTTCAAACCATTCCA+AGG - chr5_3:2007865-2007884 None:intergenic 35.0%
TTGGAATGGTTTGAAGAATC+TGG + chr5_3:2007864-2007883 Msa0791170:CDS 35.0%
TGGAATGGTTTGAAGAATCT+GGG + chr5_3:2007865-2007884 Msa0791170:CDS 35.0%
!! ATTTATGTGGTTCGGTACAT+AGG + chr5_3:2008320-2008339 Msa0791170:intron 35.0%
! TTATAGCATTTTAAGCAGCC+AGG + chr5_3:2008631-2008650 Msa0791170:intron 35.0%
! ACTTGTGATTAGTTGCTAGT+TGG + chr5_3:2008717-2008736 Msa0791170:intron 35.0%
AGAAGCAAAGGATGTCTATA+AGG + chr5_3:2008971-2008990 Msa0791170:intron 35.0%
AGTTGGAAAGAAGTTTCCTT+TGG + chr5_3:2009050-2009069 Msa0791170:intron 35.0%
AGTGACAATTGATAAGCCAA+AGG - chr5_3:2009069-2009088 None:intergenic 35.0%
ATCAGCATCTGGGTATTATT+TGG - chr5_3:2009271-2009290 None:intergenic 35.0%
AAATAATACCCAGATGCTGA+TGG + chr5_3:2009270-2009289 Msa0791170:intron 35.0%
! GCAGATTTGGTACATATTAC+AGG - chr5_3:2009299-2009318 None:intergenic 35.0%
GTAAAAAACCAAGATAGAGC+AGG - chr5_3:2009421-2009440 None:intergenic 35.0%
ATTACGAATGAAGGAATCTC+AGG - chr5_3:2009766-2009785 None:intergenic 35.0%
ATGAAGGAATCACAGAACAT+GGG - chr5_3:2009828-2009847 None:intergenic 35.0%
AATGAAGGAATCACAGAACA+TGG - chr5_3:2009829-2009848 None:intergenic 35.0%
AGTAGAAGATAATGCATTGC+CGG + chr5_3:2009964-2009983 Msa0791170:intron 35.0%
TGAAAGTTATACCGACATTC+AGG + chr5_3:2009993-2010012 Msa0791170:intron 35.0%
GAAAGTTATACCGACATTCA+GGG + chr5_3:2009994-2010013 Msa0791170:intron 35.0%
! ATTGTTGTTGCTATTGGTGA+TGG + chr5_3:2010136-2010155 Msa0791170:intron 35.0%
! TTGGTTGTTGTTATTGGTGA+TGG + chr5_3:2010186-2010205 Msa0791170:intron 35.0%
!!! TTACTTTTTTGATAGCCCCT+CGG + chr5_3:2010228-2010247 Msa0791170:intron 35.0%
AAATCAAAGAATCAACCGAG+TGG - chr5_3:2010379-2010398 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG + chr5_3:2010440-2010459 Msa0791170:CDS 35.0%
! AAGAGTACGTATTCTGAGTT+GGG - chr5_3:2010491-2010510 None:intergenic 35.0%
TTCTTCTTCAACAGATGGTA+TGG - chr5_3:2010771-2010790 None:intergenic 35.0%
GAACATGTTCCTCCTAGTTT+AGG - chr5_3:2007787-2007806 None:intergenic 40.0%
CATTCCAAGGAGAGAAAAGA+CGG - chr5_3:2007852-2007871 None:intergenic 40.0%
TGGTTTATGCGTCTCTCTTT+GGG + chr5_3:2008030-2008049 Msa0791170:CDS 40.0%
TTCGGTACATAGGTTGTGTT+TGG + chr5_3:2008330-2008349 Msa0791170:intron 40.0%
! TGAGTCTTTGAGAGAGCTTA+GGG - chr5_3:2008532-2008551 None:intergenic 40.0%
! TTGAGTCTTTGAGAGAGCTT+AGG - chr5_3:2008533-2008552 None:intergenic 40.0%
CTACTTTGCAAGAGAAGCAA+AGG + chr5_3:2008959-2008978 Msa0791170:intron 40.0%
! GGTATTATTTGGCTTCTTGG+AGG - chr5_3:2009260-2009279 None:intergenic 40.0%
! CTGGGTATTATTTGGCTTCT+TGG - chr5_3:2009263-2009282 None:intergenic 40.0%
GGATTAAACCTGCTCTATCT+TGG + chr5_3:2009410-2009429 Msa0791170:intron 40.0%
ATCTTAGTGGCGGTTAAGAT+GGG - chr5_3:2009456-2009475 None:intergenic 40.0%
CGATCAATTCATCTTAGTGG+CGG - chr5_3:2009466-2009485 None:intergenic 40.0%
CGCCACTAAGATGAATTGAT+CGG + chr5_3:2009464-2009483 Msa0791170:intron 40.0%
CTCCGATCAATTCATCTTAG+TGG - chr5_3:2009469-2009488 None:intergenic 40.0%
AGTGTGATACCATGTGTTCT+TGG + chr5_3:2009523-2009542 Msa0791170:intron 40.0%
TATCTGCATCCAAGAACACA+TGG - chr5_3:2009535-2009554 None:intergenic 40.0%
GGTATAACTTTCACAGCAAC+CGG - chr5_3:2009986-2010005 None:intergenic 40.0%
AATTCACTAGAGTCCCTTTG+AGG + chr5_3:2010086-2010105 Msa0791170:intron 40.0%
! CAAGGCTTGGTTGTTGTTAT+TGG + chr5_3:2010180-2010199 Msa0791170:intron 40.0%
ACTAACCTGGATCTCTCTAA+TGG - chr5_3:2010312-2010331 None:intergenic 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG + chr5_3:2010404-2010423 Msa0791170:intron 40.0%
ACGTCCTAAAAGAGCAAACA+TGG - chr5_3:2010411-2010430 None:intergenic 40.0%
! GAAGAGTACGTATTCTGAGT+TGG - chr5_3:2010492-2010511 None:intergenic 40.0%
CTGAGAACCATTGGTACTAT+CGG - chr5_3:2010550-2010569 None:intergenic 40.0%
AGATGCTGGATAACTCACTA+GGG - chr5_3:2010584-2010603 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG - chr5_3:2010585-2010604 None:intergenic 40.0%
AAAGACGGTGACCCAATGAA+TGG - chr5_3:2007837-2007856 None:intergenic 45.0%
! CGTCTTTTCTCTCCTTGGAA+TGG + chr5_3:2007850-2007869 Msa0791170:CDS 45.0%
GATAGAAAGGGTCGGTGTAA+AGG + chr5_3:2008002-2008021 Msa0791170:intron 45.0%
GTGGTTTATGCGTCTCTCTT+TGG + chr5_3:2008029-2008048 Msa0791170:CDS 45.0%
GGTTTATGCGTCTCTCTTTG+GGG + chr5_3:2008031-2008050 Msa0791170:CDS 45.0%
CCCAATTACAAGAGCTTCAG+GGG - chr5_3:2008063-2008082 None:intergenic 45.0%
CCCCTGAAGCTCTTGTAATT+GGG + chr5_3:2008060-2008079 Msa0791170:CDS 45.0%
CCCCAATTACAAGAGCTTCA+GGG - chr5_3:2008064-2008083 None:intergenic 45.0%
CCCTGAAGCTCTTGTAATTG+GGG + chr5_3:2008061-2008080 Msa0791170:CDS 45.0%
ACCCCAATTACAAGAGCTTC+AGG - chr5_3:2008065-2008084 None:intergenic 45.0%
TCCAAACAGACTCCTTGTCA+AGG + chr5_3:2008600-2008619 Msa0791170:intron 45.0%
TCCTTGACAAGGAGTCTGTT+TGG - chr5_3:2008604-2008623 None:intergenic 45.0%
! TTGGTGATATGAGCTGCCTT+AGG + chr5_3:2008736-2008755 Msa0791170:intron 45.0%
ACAGGTATCCATCAGCATCT+GGG - chr5_3:2009281-2009300 None:intergenic 45.0%
TACAGGTATCCATCAGCATC+TGG - chr5_3:2009282-2009301 None:intergenic 45.0%
TCTTAGTGGCGGTTAAGATG+GGG - chr5_3:2009455-2009474 None:intergenic 45.0%
CATCTTAGTGGCGGTTAAGA+TGG - chr5_3:2009457-2009476 None:intergenic 45.0%
CTGCATTCAAAGAAACCGAG+GGG - chr5_3:2010246-2010265 None:intergenic 45.0%
CCTGCATTCAAAGAAACCGA+GGG - chr5_3:2010247-2010266 None:intergenic 45.0%
ACCTGCATTCAAAGAAACCG+AGG - chr5_3:2010248-2010267 None:intergenic 45.0%
AATGCAGGTTGCTCGAAATC+TGG + chr5_3:2010259-2010278 Msa0791170:intron 45.0%
ATGCAGGTTGCTCGAAATCT+GGG + chr5_3:2010260-2010279 Msa0791170:intron 45.0%
ACCTGGATCTCTCTAATGGT+GGG - chr5_3:2010308-2010327 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG - chr5_3:2010309-2010328 None:intergenic 45.0%
! TTTGTTGTGCCAATGCCACT+CGG + chr5_3:2010361-2010380 Msa0791170:intron 45.0%
AAGAATCAACCGAGTGGCAT+TGG - chr5_3:2010373-2010392 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG - chr5_3:2010454-2010473 None:intergenic 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG - chr5_3:2010514-2010533 None:intergenic 45.0%
TTGGTACTATCGGTGGATAG+TGG - chr5_3:2010540-2010559 None:intergenic 45.0%
CTATCCACCGATAGTACCAA+TGG + chr5_3:2010540-2010559 Msa0791170:CDS 45.0%
AGAACCATTGGTACTATCGG+TGG - chr5_3:2010547-2010566 None:intergenic 45.0%
AACAGCAGTCTGAGAACCAT+TGG - chr5_3:2010559-2010578 None:intergenic 45.0%
! GTCACCGTCTTTTCTCTCCT+TGG + chr5_3:2007845-2007864 Msa0791170:CDS 50.0%
! TTATGCGTCTCTCTTTGGGG+TGG + chr5_3:2008034-2008053 Msa0791170:CDS 50.0%
!! TATGCGTCTCTCTTTGGGGT+GGG + chr5_3:2008035-2008054 Msa0791170:CDS 50.0%
GCCCCTGAAGCTCTTGTAAT+TGG + chr5_3:2008059-2008078 Msa0791170:CDS 50.0%
TGGTCCTAAAGGTCTTGCTG+AGG + chr5_3:2008103-2008122 Msa0791170:CDS 50.0%
CTGACCTCAGCAAGACCTTT+AGG - chr5_3:2008110-2008129 None:intergenic 50.0%
! ATAAGACCGGCTCCTTGACA+AGG - chr5_3:2008615-2008634 None:intergenic 50.0%
! GCATTTTAAGCAGCCAGGAG+AGG + chr5_3:2008636-2008655 Msa0791170:intron 50.0%
TCTAACACTTGGACCTCTCC+TGG - chr5_3:2008652-2008671 None:intergenic 50.0%
CAAGTTGTCAAGAGCGACCT+TGG - chr5_3:2008933-2008952 None:intergenic 50.0%
TTAGTGGCGGTTAAGATGGG+GGG - chr5_3:2009453-2009472 None:intergenic 50.0%
CTTAGTGGCGGTTAAGATGG+GGG - chr5_3:2009454-2009473 None:intergenic 50.0%
AATTGCCAAGGAACCGCACA+TGG - chr5_3:2009665-2009684 None:intergenic 50.0%
CCCTCGGTTTCTTTGAATGC+AGG + chr5_3:2010244-2010263 Msa0791170:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG + chr5_3:2010304-2010323 Msa0791170:CDS 50.0%
AGTACCCTTGAACGGGAGAT+TGG + chr5_3:2010447-2010466 Msa0791170:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG - chr5_3:2010455-2010474 None:intergenic 50.0%
GGGTCGGTGTAAAGGTAACG+TGG + chr5_3:2008010-2008029 Msa0791170:intron 55.0%
CAGACTCCTTGTCAAGGAGC+CGG + chr5_3:2008606-2008625 Msa0791170:intron 55.0%
GGCTATCTGTGAGCCATGTG+CGG + chr5_3:2009649-2009668 Msa0791170:intron 55.0%
CTTGTCCCACTACGTGGGAT+CGG - chr5_3:2010164-2010183 None:intergenic 55.0%
! CAAGCCTTGTCCCACTACGT+GGG - chr5_3:2010169-2010188 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG - chr5_3:2010529-2010548 None:intergenic 55.0%
GTGAGCCATGTGCGGTTCCT+TGG + chr5_3:2009657-2009676 Msa0791170:intron 60.0%
!! ATGGTGCCGATCCCACGTAG+TGG + chr5_3:2010155-2010174 Msa0791170:intron 60.0%
!! TGGTGCCGATCCCACGTAGT+GGG + chr5_3:2010156-2010175 Msa0791170:intron 60.0%
! CGATCCCACGTAGTGGGACA+AGG + chr5_3:2010162-2010181 Msa0791170:intron 60.0%
! CCAAGCCTTGTCCCACTACG+TGG - chr5_3:2010170-2010189 None:intergenic 60.0%
! CCACGTAGTGGGACAAGGCT+TGG + chr5_3:2010167-2010186 Msa0791170:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 2007739 2010802 2007739 ID=Msa0791170;Name=Msa0791170
chr5_3 mRNA 2007739 2010802 2007739 ID=Msa0791170-mRNA-1;Parent=Msa0791170;Name=Msa0791170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.5|1|0.66|0.5|4|170|186
chr5_3 exon 2007739 2007918 2007739 ID=Msa0791170-mRNA-1:exon:817;Parent=Msa0791170-mRNA-1
chr5_3 exon 2008011 2008124 2008011 ID=Msa0791170-mRNA-1:exon:818;Parent=Msa0791170-mRNA-1
chr5_3 exon 2010266 2010325 2010266 ID=Msa0791170-mRNA-1:exon:819;Parent=Msa0791170-mRNA-1
chr5_3 exon 2010426 2010802 2010426 ID=Msa0791170-mRNA-1:exon:820;Parent=Msa0791170-mRNA-1
chr5_3 CDS 2007739 2007918 2007739 ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3 CDS 2008011 2008124 2008011 ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3 CDS 2010266 2010325 2010266 ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3 CDS 2010426 2010632 2010426 ID=Msa0791170-mRNA-1:cds;Parent=Msa0791170-mRNA-1
chr5_3 three_prime_UTR 2010633 2010802 2010633 ID=Msa0791170-mRNA-1:three_prime_utr;Parent=Msa0791170-mRNA-1
Gene Sequence

>Msa0791170

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAACCATTTTTTCGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAGTGAGTTATCCAGCATCTATTTTATTTTTATCTGCGGGGCAGTTTAG

Protein sequence

>Msa0791170

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKNHFFGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPSELSSIYFIFICGAV*