Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0460230 | -0.817352 | 3.448288e-52 | -8.615850e-47 |
| Msa0042210 | Msa0460230 | -0.808691 | 2.734216e-50 | -8.615850e-47 |
| Msa0047660 | Msa0460230 | -0.865235 | 6.841011e-65 | -8.615850e-47 |
| Msa0070120 | Msa0460230 | 0.802349 | 5.850888e-49 | -8.615850e-47 |
| Msa0086620 | Msa0460230 | -0.810225 | 1.281294e-50 | -8.615850e-47 |
| Msa0111730 | Msa0460230 | 0.827307 | 1.681638e-54 | -8.615850e-47 |
| Msa0117650 | Msa0460230 | 0.813251 | 2.812937e-51 | -8.615850e-47 |
| Msa0122930 | Msa0460230 | -0.803654 | 3.144630e-49 | -8.615850e-47 |
| Msa0123960 | Msa0460230 | -0.800218 | 1.597653e-48 | -8.615850e-47 |
| Msa0129770 | Msa0460230 | 0.824674 | 7.100615e-54 | -8.615850e-47 |
| Msa0145590 | Msa0460230 | -0.808698 | 2.725711e-50 | -8.615850e-47 |
| Msa0161230 | Msa0460230 | 0.820099 | 8.201108e-53 | -8.615850e-47 |
| Msa0162170 | Msa0460230 | -0.808124 | 3.612925e-50 | -8.615850e-47 |
| Msa0167570 | Msa0460230 | -0.809328 | 1.997348e-50 | -8.615850e-47 |
| Msa0185040 | Msa0460230 | 0.801353 | 9.370837e-49 | -8.615850e-47 |
| Msa0367380 | Msa0460230 | -0.820334 | 7.244436e-53 | -8.615850e-47 |
| Msa0382050 | Msa0460230 | -0.827126 | 1.858234e-54 | -8.615850e-47 |
| Msa0386230 | Msa0460230 | -0.817923 | 2.562909e-52 | -8.615850e-47 |
| Msa0397420 | Msa0460230 | -0.805670 | 1.193419e-49 | -8.615850e-47 |
| Msa0431550 | Msa0460230 | -0.803994 | 2.671866e-49 | -8.615850e-47 |
| Msa0444770 | Msa0460230 | -0.838793 | 2.328221e-57 | -8.615850e-47 |
| Msa0460230 | Msa0462240 | -0.827296 | 1.692246e-54 | -8.615850e-47 |
| Msa0460230 | Msa0474660 | -0.801939 | 7.105756e-49 | -8.615850e-47 |
| Msa0460230 | Msa0484590 | -0.809437 | 1.892774e-50 | -8.615850e-47 |
| Msa0460230 | Msa0492330 | -0.813759 | 2.174880e-51 | -8.615850e-47 |
| Msa0460230 | Msa0506700 | -0.800679 | 1.286986e-48 | -8.615850e-47 |
| Msa0460230 | Msa0514630 | -0.820317 | 7.312558e-53 | -8.615850e-47 |
| Msa0460230 | Msa0525180 | -0.810397 | 1.176094e-50 | -8.615850e-47 |
| Msa0460230 | Msa0548420 | 0.802692 | 4.971792e-49 | -8.615850e-47 |
| Msa0460230 | Msa0561450 | -0.809692 | 1.668888e-50 | -8.615850e-47 |
| Msa0460230 | Msa0580890 | -0.802167 | 6.378959e-49 | -8.615850e-47 |
| Msa0460230 | Msa0588040 | 0.813537 | 2.434430e-51 | -8.615850e-47 |
| Msa0460230 | Msa0597370 | -0.804730 | 1.877240e-49 | -8.615850e-47 |
| Msa0460230 | Msa0608250 | -0.850786 | 1.355856e-60 | -8.615850e-47 |
| Msa0460230 | Msa0619030 | -0.847194 | 1.349020e-59 | -8.615850e-47 |
| Msa0460230 | Msa0622450 | -0.803118 | 4.060217e-49 | -8.615850e-47 |
| Msa0460230 | Msa0637590 | 0.830323 | 3.133973e-55 | -8.615850e-47 |
| Msa0460230 | Msa0637700 | 0.803080 | 4.134028e-49 | -8.615850e-47 |
| Msa0460230 | Msa0644340 | 0.805565 | 1.255602e-49 | -8.615850e-47 |
| Msa0460230 | Msa0666950 | 0.802947 | 4.405792e-49 | -8.615850e-47 |
| Msa0460230 | Msa0673620 | -0.801307 | 9.576633e-49 | -8.615850e-47 |
| Msa0460230 | Msa0684030 | -0.800913 | 1.152792e-48 | -8.615850e-47 |
| Msa0460230 | Msa0689840 | 0.801447 | 8.967465e-49 | -8.615850e-47 |
| Msa0460230 | Msa0691320 | -0.855150 | 7.653862e-62 | -8.615850e-47 |
| Msa0460230 | Msa0706790 | -0.824077 | 9.814797e-54 | -8.615850e-47 |
| Msa0460230 | Msa0706860 | -0.822354 | 2.477178e-53 | -8.615850e-47 |
| Msa0460230 | Msa0743370 | 0.803854 | 2.858255e-49 | -8.615850e-47 |
| Msa0460230 | Msa0750200 | -0.807540 | 4.808131e-50 | -8.615850e-47 |
| Msa0460230 | Msa0753590 | -0.814735 | 1.324494e-51 | -8.615850e-47 |
| Msa0460230 | Msa0784780 | -0.824824 | 6.548368e-54 | -8.615850e-47 |
| Msa0460230 | Msa0792490 | -0.811959 | 5.393731e-51 | -8.615850e-47 |
| Msa0460230 | Msa0829250 | -0.803658 | 3.138924e-49 | -8.615850e-47 |
| Msa0460230 | Msa0853200 | -0.807686 | 4.477690e-50 | -8.615850e-47 |
| Msa0460230 | Msa0858250 | -0.829697 | 4.451546e-55 | -8.615850e-47 |
| Msa0460230 | Msa0882480 | -0.818033 | 2.420732e-52 | -8.615850e-47 |
| Msa0460230 | Msa0901660 | -0.818501 | 1.896960e-52 | -8.615850e-47 |
| Msa0460230 | Msa0913500 | 0.800722 | 1.261592e-48 | -8.615850e-47 |
| Msa0460230 | Msa0925940 | 0.856035 | 4.221695e-62 | -8.615850e-47 |
| Msa0460230 | Msa0958960 | -0.804493 | 2.103441e-49 | -8.615850e-47 |
| Msa0460230 | Msa1002550 | -0.804469 | 2.127878e-49 | -8.615850e-47 |
| Msa0460230 | Msa1035050 | 0.802053 | 6.734275e-49 | -8.615850e-47 |
| Msa0460230 | Msa1058550 | -0.823422 | 1.396933e-53 | -8.615850e-47 |
| Msa0460230 | Msa1068010 | -0.801576 | 8.437395e-49 | -8.615850e-47 |
| Msa0460230 | Msa1130150 | -0.815553 | 8.716988e-52 | -8.615850e-47 |
| Msa0460230 | Msa1156100 | -0.820852 | 5.510656e-53 | -8.615850e-47 |
| Msa0460230 | Msa1184930 | 0.818337 | 2.065980e-52 | -8.615850e-47 |
| Msa0460230 | Msa1191270 | 0.807904 | 4.024182e-50 | -8.615850e-47 |
| Msa0460230 | Msa1197740 | -0.803308 | 3.708803e-49 | -8.615850e-47 |
| Msa0460230 | Msa1203320 | -0.812252 | 4.653980e-51 | -8.615850e-47 |
| Msa0460230 | Msa1215540 | -0.806916 | 6.519886e-50 | -8.615850e-47 |
| Msa0460230 | Msa1239210 | 0.811640 | 6.328401e-51 | -8.615850e-47 |
| Msa0460230 | Msa1251440 | -0.804239 | 2.376646e-49 | -8.615850e-47 |
| Msa0460230 | Msa1263520 | 0.801813 | 7.541890e-49 | -8.615850e-47 |
| Msa0460230 | Msa1269200 | 0.815840 | 7.523840e-52 | -8.615850e-47 |
| Msa0460230 | Msa1287100 | -0.820846 | 5.529015e-53 | -8.615850e-47 |
| Msa0460230 | Msa1303690 | -0.803717 | 3.050550e-49 | -8.615850e-47 |
| Msa0460230 | Msa1350130 | -0.817920 | 2.567978e-52 | -8.615850e-47 |
| Msa0460230 | Msa1363170 | -0.804548 | 2.048901e-49 | -8.615850e-47 |
| Msa0460230 | Msa1373930 | -0.812696 | 3.723586e-51 | -8.615850e-47 |
| Msa0460230 | Msa1395250 | 0.810528 | 1.102349e-50 | -8.615850e-47 |
| Msa0460230 | Msa1404810 | -0.803891 | 2.808004e-49 | -8.615850e-47 |
| Msa0460230 | Msa1408230 | -0.805226 | 1.478612e-49 | -8.615850e-47 |
| Msa0314020 | Msa0460230 | 0.804705 | 1.900215e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCTGTCTACGGAGTATT+TGG | 0.191922 | 3_3:-57296772 | Msa0460230:CDS |
| TCACAGAATTCACTCATATC+AGG | 0.325016 | 3_3:-57298006 | Msa0460230:CDS |
| ATGCAATGGCATCAACATAA+AGG | 0.335212 | 3_3:+57297968 | None:intergenic |
| TTGCAATTGGCATCACTGTT+GGG | 0.370285 | 3_3:+57296718 | None:intergenic |
| CTGATTCTTATAATTGCAAT+TGG | 0.380687 | 3_3:+57296705 | None:intergenic |
| ACGGAGTATTTGGGAAGCTT+TGG | 0.388916 | 3_3:-57296762 | Msa0460230:CDS |
| AATTATAAGAATCAGCAATA+TGG | 0.406684 | 3_3:-57296697 | Msa0460230:CDS |
| CAAAACCTTCTTCCACCATA+TGG | 0.426864 | 3_3:+57297938 | None:intergenic |
| CTCACTGGAAAGTGGCGTTT+CGG | 0.439054 | 3_3:-57296612 | Msa0460230:CDS |
| TGCAATGGCATCAACATAAA+GGG | 0.440995 | 3_3:+57297969 | None:intergenic |
| CATATCAGGATATGTACAAT+TGG | 0.450883 | 3_3:-57297992 | Msa0460230:CDS |
| TACTTCCATATGGTGGAAGA+AGG | 0.457126 | 3_3:-57297943 | Msa0460230:CDS |
| AGTCTGTCTACGGAGTATTT+GGG | 0.463571 | 3_3:-57296771 | Msa0460230:CDS |
| GGAAAGTGGCGTTTCGGAAG+AGG | 0.477952 | 3_3:-57296606 | Msa0460230:CDS |
| ATTGCAATTGGCATCACTGT+TGG | 0.490412 | 3_3:+57296717 | None:intergenic |
| AGAAAAGAAGTTGTTGCTGC+AGG | 0.497973 | 3_3:+57296655 | None:intergenic |
| TGTTATTCTTAGTCTGTCTA+CGG | 0.511522 | 3_3:-57296781 | Msa0460230:intron |
| TTCGGAAGAGGTGGATATGA+AGG | 0.535582 | 3_3:-57296594 | None:intergenic |
| TGCAATTGGCATCACTGTTG+GGG | 0.544430 | 3_3:+57296719 | None:intergenic |
| GGTGGATGAGTATGCCTCAC+TGG | 0.556234 | 3_3:-57296627 | Msa0460230:CDS |
| TATGAGTGAATTCTGTGAAA+AGG | 0.560563 | 3_3:+57298011 | None:intergenic |
| GAGTATGCCTCACTGGAAAG+TGG | 0.595100 | 3_3:-57296620 | Msa0460230:CDS |
| GAAGCTTTGGCCTAAAAGCA+AGG | 0.600662 | 3_3:-57296749 | Msa0460230:CDS |
| AAGAATCAGCAATATGGTGA+AGG | 0.604744 | 3_3:-57296691 | Msa0460230:CDS |
| CATATGGAAGTAAAATGCAA+TGG | 0.610452 | 3_3:+57297954 | None:intergenic |
| AAGTGGCGTTTCGGAAGAGG+TGG | 0.614767 | 3_3:-57296603 | Msa0460230:CDS |
| TCGGTTACATCAATCACCAC+AGG | 0.631138 | 3_3:-57297892 | Msa0460230:intron |
| TGATTGATGTAACCGAAGGA+AGG | 0.674739 | 3_3:+57297899 | None:intergenic |
| CGAAACGCCACTTTCCAGTG+AGG | 0.677018 | 3_3:+57296613 | None:intergenic |
| GTGGTGATTGATGTAACCGA+AGG | 0.752317 | 3_3:+57297895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAATATTAATATTTGTT+TGG | + | chr3_3:57297358-57297377 | None:intergenic | 10.0% |
| !! | TTGTAATATTAATATTTGTT+TGG | + | chr3_3:57297358-57297377 | None:intergenic | 10.0% |
| !! | ACGTATGAAAAAACAAATAT+TGG | - | chr3_3:57297042-57297061 | Msa0460230:intron | 20.0% |
| !!! | GATTTTTAATAATAAAGGGA+TGG | + | chr3_3:57297298-57297317 | None:intergenic | 20.0% |
| !!! | GTTTGGATCTTTTTTTTTTT+TGG | + | chr3_3:57297341-57297360 | None:intergenic | 20.0% |
| !! | TAATATACCACTTGATATTA+AGG | + | chr3_3:57297547-57297566 | None:intergenic | 20.0% |
| !!! | TATATTCCAATTTTCTTGTT+TGG | - | chr3_3:57297747-57297766 | Msa0460230:intron | 20.0% |
| !!! | ATATTCCAATTTTCTTGTTT+GGG | - | chr3_3:57297748-57297767 | Msa0460230:intron | 20.0% |
| !! | AATTATAAGAATCAGCAATA+TGG | - | chr3_3:57297920-57297939 | Msa0460230:CDS | 20.0% |
| !! | ACGTATGAAAAAACAAATAT+TGG | - | chr3_3:57297042-57297061 | Msa0460230:intron | 20.0% |
| !!! | GATTTTTAATAATAAAGGGA+TGG | + | chr3_3:57297298-57297317 | None:intergenic | 20.0% |
| !!! | GTTTGGATCTTTTTTTTTTT+TGG | + | chr3_3:57297341-57297360 | None:intergenic | 20.0% |
| !! | TAATATACCACTTGATATTA+AGG | + | chr3_3:57297547-57297566 | None:intergenic | 20.0% |
| !!! | TATATTCCAATTTTCTTGTT+TGG | - | chr3_3:57297747-57297766 | Msa0460230:intron | 20.0% |
| !!! | ATATTCCAATTTTCTTGTTT+GGG | - | chr3_3:57297748-57297767 | Msa0460230:intron | 20.0% |
| !! | AATTATAAGAATCAGCAATA+TGG | - | chr3_3:57297920-57297939 | Msa0460230:CDS | 20.0% |
| ! | ATGTATAATTCATTCAGCTA+TGG | - | chr3_3:57296793-57296812 | Msa0460230:intron | 25.0% |
| ! | ATATTGGAAGAAATCTCTTA+AGG | - | chr3_3:57297058-57297077 | Msa0460230:intron | 25.0% |
| ! | TATTGGAAGAAATCTCTTAA+GGG | - | chr3_3:57297059-57297078 | Msa0460230:intron | 25.0% |
| !! | TTTTAATAATAAAGGGATGG+AGG | + | chr3_3:57297295-57297314 | None:intergenic | 25.0% |
| ! | TGATTAACCTTAATATCAAG+TGG | - | chr3_3:57297537-57297556 | Msa0460230:intron | 25.0% |
| ! | ATTGGAATATACTATGTAAG+TGG | + | chr3_3:57297738-57297757 | None:intergenic | 25.0% |
| ! | CTGATTCTTATAATTGCAAT+TGG | + | chr3_3:57297915-57297934 | None:intergenic | 25.0% |
| ! | ATGTATAATTCATTCAGCTA+TGG | - | chr3_3:57296793-57296812 | Msa0460230:intron | 25.0% |
| ! | ATATTGGAAGAAATCTCTTA+AGG | - | chr3_3:57297058-57297077 | Msa0460230:intron | 25.0% |
| ! | TATTGGAAGAAATCTCTTAA+GGG | - | chr3_3:57297059-57297078 | Msa0460230:intron | 25.0% |
| !! | TTTTAATAATAAAGGGATGG+AGG | + | chr3_3:57297295-57297314 | None:intergenic | 25.0% |
| ! | TGATTAACCTTAATATCAAG+TGG | - | chr3_3:57297537-57297556 | Msa0460230:intron | 25.0% |
| ! | ATTGGAATATACTATGTAAG+TGG | + | chr3_3:57297738-57297757 | None:intergenic | 25.0% |
| ! | CTGATTCTTATAATTGCAAT+TGG | + | chr3_3:57297915-57297934 | None:intergenic | 25.0% |
| TATGAGTGAATTCTGTGAAA+AGG | + | chr3_3:57296609-57296628 | None:intergenic | 30.0% | |
| CATATCAGGATATGTACAAT+TGG | - | chr3_3:57296625-57296644 | Msa0460230:CDS | 30.0% | |
| CATATGGAAGTAAAATGCAA+TGG | + | chr3_3:57296666-57296685 | None:intergenic | 30.0% | |
| ! | CATTGCATTTTACTTCCATA+TGG | - | chr3_3:57296664-57296683 | Msa0460230:CDS | 30.0% |
| TATACATAATCTAGCACATG+TGG | + | chr3_3:57296780-57296799 | None:intergenic | 30.0% | |
| GAGTCTCTAAATCATTTAGT+CGG | - | chr3_3:57296999-57297018 | Msa0460230:intron | 30.0% | |
| AGTCTCTAAATCATTTAGTC+GGG | - | chr3_3:57297000-57297019 | Msa0460230:intron | 30.0% | |
| TAATATCATTATCAGCACCA+AGG | - | chr3_3:57297436-57297455 | Msa0460230:intron | 30.0% | |
| TAAGGTTAATCAGAATGTGA+GGG | + | chr3_3:57297529-57297548 | None:intergenic | 30.0% | |
| TTAAGGTTAATCAGAATGTG+AGG | + | chr3_3:57297530-57297549 | None:intergenic | 30.0% | |
| CTGCAACGTATTAAATAAAC+CGG | - | chr3_3:57297587-57297606 | Msa0460230:intron | 30.0% | |
| AGAAACCCAAACAAGAAAAT+TGG | + | chr3_3:57297756-57297775 | None:intergenic | 30.0% | |
| TGTTATTCTTAGTCTGTCTA+CGG | - | chr3_3:57297836-57297855 | Msa0460230:intron | 30.0% | |
| ! | CAACAACTTCTTTTCTTCTT+TGG | - | chr3_3:57297969-57297988 | Msa0460230:CDS | 30.0% |
| TATGAGTGAATTCTGTGAAA+AGG | + | chr3_3:57296609-57296628 | None:intergenic | 30.0% | |
| CATATCAGGATATGTACAAT+TGG | - | chr3_3:57296625-57296644 | Msa0460230:CDS | 30.0% | |
| CATATGGAAGTAAAATGCAA+TGG | + | chr3_3:57296666-57296685 | None:intergenic | 30.0% | |
| ! | CATTGCATTTTACTTCCATA+TGG | - | chr3_3:57296664-57296683 | Msa0460230:CDS | 30.0% |
| TATACATAATCTAGCACATG+TGG | + | chr3_3:57296780-57296799 | None:intergenic | 30.0% | |
| GAGTCTCTAAATCATTTAGT+CGG | - | chr3_3:57296999-57297018 | Msa0460230:intron | 30.0% | |
| AGTCTCTAAATCATTTAGTC+GGG | - | chr3_3:57297000-57297019 | Msa0460230:intron | 30.0% | |
| TAATATCATTATCAGCACCA+AGG | - | chr3_3:57297436-57297455 | Msa0460230:intron | 30.0% | |
| TAAGGTTAATCAGAATGTGA+GGG | + | chr3_3:57297529-57297548 | None:intergenic | 30.0% | |
| TTAAGGTTAATCAGAATGTG+AGG | + | chr3_3:57297530-57297549 | None:intergenic | 30.0% | |
| CTGCAACGTATTAAATAAAC+CGG | - | chr3_3:57297587-57297606 | Msa0460230:intron | 30.0% | |
| AGAAACCCAAACAAGAAAAT+TGG | + | chr3_3:57297756-57297775 | None:intergenic | 30.0% | |
| TGTTATTCTTAGTCTGTCTA+CGG | - | chr3_3:57297836-57297855 | Msa0460230:intron | 30.0% | |
| ! | CAACAACTTCTTTTCTTCTT+TGG | - | chr3_3:57297969-57297988 | Msa0460230:CDS | 30.0% |
| TCACAGAATTCACTCATATC+AGG | - | chr3_3:57296611-57296630 | Msa0460230:CDS | 35.0% | |
| TGCAATGGCATCAACATAAA+GGG | + | chr3_3:57296651-57296670 | None:intergenic | 35.0% | |
| ATGCAATGGCATCAACATAA+AGG | + | chr3_3:57296652-57296671 | None:intergenic | 35.0% | |
| ! | TGCATTTTACTTCCATATGG+TGG | - | chr3_3:57296667-57296686 | Msa0460230:CDS | 35.0% |
| !!! | CTTACTTTTTCACCTTCCTT+CGG | - | chr3_3:57296706-57296725 | Msa0460230:CDS | 35.0% |
| ACACATATGAATTGTACCTG+TGG | + | chr3_3:57296744-57296763 | None:intergenic | 35.0% | |
| CAGCTTTCACAAGAAACATA+TGG | + | chr3_3:57296825-57296844 | None:intergenic | 35.0% | |
| ATTATGCATATGCTTAGACG+AGG | - | chr3_3:57296930-57296949 | Msa0460230:intron | 35.0% | |
| GTCTCTAAATCATTTAGTCG+GGG | - | chr3_3:57297001-57297020 | Msa0460230:intron | 35.0% | |
| TCTCTAAATCATTTAGTCGG+GGG | - | chr3_3:57297002-57297021 | Msa0460230:intron | 35.0% | |
| ACACTTACATGAGAATAGCT+TGG | - | chr3_3:57297092-57297111 | Msa0460230:intron | 35.0% | |
| TACATAATTTGAGCGAGAAG+TGG | - | chr3_3:57297203-57297222 | Msa0460230:intron | 35.0% | |
| AAGAACTGTATGTATCTCAG+AGG | - | chr3_3:57297252-57297271 | Msa0460230:intron | 35.0% | |
| TAATAAAGGGATGGAGGATT+AGG | + | chr3_3:57297289-57297308 | None:intergenic | 35.0% | |
| CAGATAGTAGATGTAAGTTC+AGG | + | chr3_3:57297410-57297429 | None:intergenic | 35.0% | |
| TTAGAGTCAAGTTTCGTGTT+AGG | + | chr3_3:57297482-57297501 | None:intergenic | 35.0% | |
| TGTTAAAGGCAGATTAAGCA+CGG | - | chr3_3:57297629-57297648 | Msa0460230:intron | 35.0% | |
| AGTGCTTGGTATAAAGAAAC+AGG | + | chr3_3:57297705-57297724 | None:intergenic | 35.0% | |
| TGCAGTTACTGTTACATTGA+AGG | - | chr3_3:57297776-57297795 | Msa0460230:intron | 35.0% | |
| AAGAATCAGCAATATGGTGA+AGG | - | chr3_3:57297926-57297945 | Msa0460230:CDS | 35.0% | |
| ! | CAACTTCTTTTCTTCTTTGG+TGG | - | chr3_3:57297972-57297991 | Msa0460230:CDS | 35.0% |
| TCACAGAATTCACTCATATC+AGG | - | chr3_3:57296611-57296630 | Msa0460230:CDS | 35.0% | |
| TGCAATGGCATCAACATAAA+GGG | + | chr3_3:57296651-57296670 | None:intergenic | 35.0% | |
| ATGCAATGGCATCAACATAA+AGG | + | chr3_3:57296652-57296671 | None:intergenic | 35.0% | |
| ! | TGCATTTTACTTCCATATGG+TGG | - | chr3_3:57296667-57296686 | Msa0460230:CDS | 35.0% |
| !!! | CTTACTTTTTCACCTTCCTT+CGG | - | chr3_3:57296706-57296725 | Msa0460230:CDS | 35.0% |
| ACACATATGAATTGTACCTG+TGG | + | chr3_3:57296744-57296763 | None:intergenic | 35.0% | |
| CAGCTTTCACAAGAAACATA+TGG | + | chr3_3:57296825-57296844 | None:intergenic | 35.0% | |
| ATTATGCATATGCTTAGACG+AGG | - | chr3_3:57296930-57296949 | Msa0460230:intron | 35.0% | |
| GTCTCTAAATCATTTAGTCG+GGG | - | chr3_3:57297001-57297020 | Msa0460230:intron | 35.0% | |
| TCTCTAAATCATTTAGTCGG+GGG | - | chr3_3:57297002-57297021 | Msa0460230:intron | 35.0% | |
| ACACTTACATGAGAATAGCT+TGG | - | chr3_3:57297092-57297111 | Msa0460230:intron | 35.0% | |
| TACATAATTTGAGCGAGAAG+TGG | - | chr3_3:57297203-57297222 | Msa0460230:intron | 35.0% | |
| AAGAACTGTATGTATCTCAG+AGG | - | chr3_3:57297252-57297271 | Msa0460230:intron | 35.0% | |
| TAATAAAGGGATGGAGGATT+AGG | + | chr3_3:57297289-57297308 | None:intergenic | 35.0% | |
| CAGATAGTAGATGTAAGTTC+AGG | + | chr3_3:57297410-57297429 | None:intergenic | 35.0% | |
| TTAGAGTCAAGTTTCGTGTT+AGG | + | chr3_3:57297482-57297501 | None:intergenic | 35.0% | |
| TGTTAAAGGCAGATTAAGCA+CGG | - | chr3_3:57297629-57297648 | Msa0460230:intron | 35.0% | |
| AGTGCTTGGTATAAAGAAAC+AGG | + | chr3_3:57297705-57297724 | None:intergenic | 35.0% | |
| TGCAGTTACTGTTACATTGA+AGG | - | chr3_3:57297776-57297795 | Msa0460230:intron | 35.0% | |
| AAGAATCAGCAATATGGTGA+AGG | - | chr3_3:57297926-57297945 | Msa0460230:CDS | 35.0% | |
| ! | CAACTTCTTTTCTTCTTTGG+TGG | - | chr3_3:57297972-57297991 | Msa0460230:CDS | 35.0% |
| ! | TACTTCCATATGGTGGAAGA+AGG | - | chr3_3:57296674-57296693 | Msa0460230:CDS | 40.0% |
| CAAAACCTTCTTCCACCATA+TGG | + | chr3_3:57296682-57296701 | None:intergenic | 40.0% | |
| CGAAGGAAGGTGAAAAAGTA+AGG | + | chr3_3:57296708-57296727 | None:intergenic | 40.0% | |
| TGATTGATGTAACCGAAGGA+AGG | + | chr3_3:57296721-57296740 | None:intergenic | 40.0% | |
| !! | TGAAAGCTGATTTGTCAAGC+AGG | - | chr3_3:57296836-57296855 | Msa0460230:intron | 40.0% |
| GTATGTATCTCAGAGGATGA+TGG | - | chr3_3:57297259-57297278 | Msa0460230:intron | 40.0% | |
| TCCTGTGTTTGACCTGTTAA+AGG | - | chr3_3:57297615-57297634 | Msa0460230:intron | 40.0% | |
| GTGCTTAATCTGCCTTTAAC+AGG | + | chr3_3:57297630-57297649 | None:intergenic | 40.0% | |
| CGAAATTCTATCAGGGTCAT+CGG | + | chr3_3:57297662-57297681 | None:intergenic | 40.0% | |
| CGATGACCCTGATAGAATTT+CGG | - | chr3_3:57297660-57297679 | Msa0460230:intron | 40.0% | |
| TCTCTGCCGAAATTCTATCA+GGG | + | chr3_3:57297669-57297688 | None:intergenic | 40.0% | |
| AAGAAACAGGACTGTGTGAA+GGG | + | chr3_3:57297692-57297711 | None:intergenic | 40.0% | |
| AAAGAAACAGGACTGTGTGA+AGG | + | chr3_3:57297693-57297712 | None:intergenic | 40.0% | |
| AACAAAGAGACTGTTGTCGT+CGG | - | chr3_3:57297800-57297819 | Msa0460230:intron | 40.0% | |
| ! | TAGTCTGTCTACGGAGTATT+TGG | - | chr3_3:57297845-57297864 | Msa0460230:intron | 40.0% |
| ! | AGTCTGTCTACGGAGTATTT+GGG | - | chr3_3:57297846-57297865 | Msa0460230:intron | 40.0% |
| TTGCAATTGGCATCACTGTT+GGG | + | chr3_3:57297902-57297921 | None:intergenic | 40.0% | |
| ATTGCAATTGGCATCACTGT+TGG | + | chr3_3:57297903-57297922 | None:intergenic | 40.0% | |
| AGAAAAGAAGTTGTTGCTGC+AGG | + | chr3_3:57297965-57297984 | None:intergenic | 40.0% | |
| ! | TACTTCCATATGGTGGAAGA+AGG | - | chr3_3:57296674-57296693 | Msa0460230:CDS | 40.0% |
| CAAAACCTTCTTCCACCATA+TGG | + | chr3_3:57296682-57296701 | None:intergenic | 40.0% | |
| CGAAGGAAGGTGAAAAAGTA+AGG | + | chr3_3:57296708-57296727 | None:intergenic | 40.0% | |
| TGATTGATGTAACCGAAGGA+AGG | + | chr3_3:57296721-57296740 | None:intergenic | 40.0% | |
| !! | TGAAAGCTGATTTGTCAAGC+AGG | - | chr3_3:57296836-57296855 | Msa0460230:intron | 40.0% |
| GTATGTATCTCAGAGGATGA+TGG | - | chr3_3:57297259-57297278 | Msa0460230:intron | 40.0% | |
| TCCTGTGTTTGACCTGTTAA+AGG | - | chr3_3:57297615-57297634 | Msa0460230:intron | 40.0% | |
| GTGCTTAATCTGCCTTTAAC+AGG | + | chr3_3:57297630-57297649 | None:intergenic | 40.0% | |
| CGAAATTCTATCAGGGTCAT+CGG | + | chr3_3:57297662-57297681 | None:intergenic | 40.0% | |
| CGATGACCCTGATAGAATTT+CGG | - | chr3_3:57297660-57297679 | Msa0460230:intron | 40.0% | |
| TCTCTGCCGAAATTCTATCA+GGG | + | chr3_3:57297669-57297688 | None:intergenic | 40.0% | |
| AAGAAACAGGACTGTGTGAA+GGG | + | chr3_3:57297692-57297711 | None:intergenic | 40.0% | |
| AAAGAAACAGGACTGTGTGA+AGG | + | chr3_3:57297693-57297712 | None:intergenic | 40.0% | |
| AACAAAGAGACTGTTGTCGT+CGG | - | chr3_3:57297800-57297819 | Msa0460230:intron | 40.0% | |
| ! | TAGTCTGTCTACGGAGTATT+TGG | - | chr3_3:57297845-57297864 | Msa0460230:intron | 40.0% |
| ! | AGTCTGTCTACGGAGTATTT+GGG | - | chr3_3:57297846-57297865 | Msa0460230:intron | 40.0% |
| TTGCAATTGGCATCACTGTT+GGG | + | chr3_3:57297902-57297921 | None:intergenic | 40.0% | |
| ATTGCAATTGGCATCACTGT+TGG | + | chr3_3:57297903-57297922 | None:intergenic | 40.0% | |
| AGAAAAGAAGTTGTTGCTGC+AGG | + | chr3_3:57297965-57297984 | None:intergenic | 40.0% | |
| GTGGTGATTGATGTAACCGA+AGG | + | chr3_3:57296725-57296744 | None:intergenic | 45.0% | |
| TCGGTTACATCAATCACCAC+AGG | - | chr3_3:57296725-57296744 | Msa0460230:CDS | 45.0% | |
| GTAGATGTAAGTTCAGGCTC+AGG | + | chr3_3:57297404-57297423 | None:intergenic | 45.0% | |
| CAGAATGTGAGGGTTAAGCT+TGG | + | chr3_3:57297519-57297538 | None:intergenic | 45.0% | |
| GCCTTTAACAGGTCAAACAC+AGG | + | chr3_3:57297619-57297638 | None:intergenic | 45.0% | |
| GTCTCTGCCGAAATTCTATC+AGG | + | chr3_3:57297670-57297689 | None:intergenic | 45.0% | |
| GTGGAAGTCATGTAAGTGCT+TGG | + | chr3_3:57297719-57297738 | None:intergenic | 45.0% | |
| ! | ACGGAGTATTTGGGAAGCTT+TGG | - | chr3_3:57297855-57297874 | Msa0460230:intron | 45.0% |
| ! | GAAGCTTTGGCCTAAAAGCA+AGG | - | chr3_3:57297868-57297887 | Msa0460230:intron | 45.0% |
| TGCAATTGGCATCACTGTTG+GGG | + | chr3_3:57297901-57297920 | None:intergenic | 45.0% | |
| GTGGTGATTGATGTAACCGA+AGG | + | chr3_3:57296725-57296744 | None:intergenic | 45.0% | |
| TCGGTTACATCAATCACCAC+AGG | - | chr3_3:57296725-57296744 | Msa0460230:CDS | 45.0% | |
| GTAGATGTAAGTTCAGGCTC+AGG | + | chr3_3:57297404-57297423 | None:intergenic | 45.0% | |
| CAGAATGTGAGGGTTAAGCT+TGG | + | chr3_3:57297519-57297538 | None:intergenic | 45.0% | |
| GCCTTTAACAGGTCAAACAC+AGG | + | chr3_3:57297619-57297638 | None:intergenic | 45.0% | |
| GTCTCTGCCGAAATTCTATC+AGG | + | chr3_3:57297670-57297689 | None:intergenic | 45.0% | |
| GTGGAAGTCATGTAAGTGCT+TGG | + | chr3_3:57297719-57297738 | None:intergenic | 45.0% | |
| ! | ACGGAGTATTTGGGAAGCTT+TGG | - | chr3_3:57297855-57297874 | Msa0460230:intron | 45.0% |
| ! | GAAGCTTTGGCCTAAAAGCA+AGG | - | chr3_3:57297868-57297887 | Msa0460230:intron | 45.0% |
| TGCAATTGGCATCACTGTTG+GGG | + | chr3_3:57297901-57297920 | None:intergenic | 45.0% | |
| !!! | TTTAGATTTTTAATAATAAA+GGG | + | chr3_3:57297302-57297321 | None:intergenic | 5.0% |
| !!! | ATTTAGATTTTTAATAATAA+AGG | + | chr3_3:57297303-57297322 | None:intergenic | 5.0% |
| !!! | TTTAGATTTTTAATAATAAA+GGG | + | chr3_3:57297302-57297321 | None:intergenic | 5.0% |
| !!! | ATTTAGATTTTTAATAATAA+AGG | + | chr3_3:57297303-57297322 | None:intergenic | 5.0% |
| TTAGTCGGGGGTTTGATCTC+TGG | - | chr3_3:57297014-57297033 | Msa0460230:intron | 50.0% | |
| CACCAAGGCTATCCACCTTA+AGG | - | chr3_3:57297451-57297470 | Msa0460230:intron | 50.0% | |
| AGCCTTAAGGTGGATAGCCT+TGG | + | chr3_3:57297456-57297475 | None:intergenic | 50.0% | |
| TGTTAGGTGCAGCCTTAAGG+TGG | + | chr3_3:57297466-57297485 | None:intergenic | 50.0% | |
| TCGTGTTAGGTGCAGCCTTA+AGG | + | chr3_3:57297469-57297488 | None:intergenic | 50.0% | |
| GGTCAAACACAGGATGCAAC+CGG | + | chr3_3:57297609-57297628 | None:intergenic | 50.0% | |
| !! | GGGCACTCTACCTTGCTTTT+AGG | + | chr3_3:57297881-57297900 | None:intergenic | 50.0% |
| GAGTATGCCTCACTGGAAAG+TGG | - | chr3_3:57297997-57298016 | Msa0460230:CDS | 50.0% | |
| CTCACTGGAAAGTGGCGTTT+CGG | - | chr3_3:57298005-57298024 | Msa0460230:CDS | 50.0% | |
| TTAGTCGGGGGTTTGATCTC+TGG | - | chr3_3:57297014-57297033 | Msa0460230:intron | 50.0% | |
| CACCAAGGCTATCCACCTTA+AGG | - | chr3_3:57297451-57297470 | Msa0460230:intron | 50.0% | |
| AGCCTTAAGGTGGATAGCCT+TGG | + | chr3_3:57297456-57297475 | None:intergenic | 50.0% | |
| TGTTAGGTGCAGCCTTAAGG+TGG | + | chr3_3:57297466-57297485 | None:intergenic | 50.0% | |
| TCGTGTTAGGTGCAGCCTTA+AGG | + | chr3_3:57297469-57297488 | None:intergenic | 50.0% | |
| GGTCAAACACAGGATGCAAC+CGG | + | chr3_3:57297609-57297628 | None:intergenic | 50.0% | |
| !! | GGGCACTCTACCTTGCTTTT+AGG | + | chr3_3:57297881-57297900 | None:intergenic | 50.0% |
| GAGTATGCCTCACTGGAAAG+TGG | - | chr3_3:57297997-57298016 | Msa0460230:CDS | 50.0% | |
| CTCACTGGAAAGTGGCGTTT+CGG | - | chr3_3:57298005-57298024 | Msa0460230:CDS | 50.0% | |
| CAGCAGCAGCTTCAAGAAGC+AGG | + | chr3_3:57297570-57297589 | None:intergenic | 55.0% | |
| GGTGGATGAGTATGCCTCAC+TGG | - | chr3_3:57297990-57298009 | Msa0460230:CDS | 55.0% | |
| ! | CGAAACGCCACTTTCCAGTG+AGG | + | chr3_3:57298007-57298026 | None:intergenic | 55.0% |
| GGAAAGTGGCGTTTCGGAAG+AGG | - | chr3_3:57298011-57298030 | Msa0460230:CDS | 55.0% | |
| AAGTGGCGTTTCGGAAGAGG+TGG | - | chr3_3:57298014-57298033 | Msa0460230:CDS | 55.0% | |
| CAGCAGCAGCTTCAAGAAGC+AGG | + | chr3_3:57297570-57297589 | None:intergenic | 55.0% | |
| GGTGGATGAGTATGCCTCAC+TGG | - | chr3_3:57297990-57298009 | Msa0460230:CDS | 55.0% | |
| ! | CGAAACGCCACTTTCCAGTG+AGG | + | chr3_3:57298007-57298026 | None:intergenic | 55.0% |
| GGAAAGTGGCGTTTCGGAAG+AGG | - | chr3_3:57298011-57298030 | Msa0460230:CDS | 55.0% | |
| AAGTGGCGTTTCGGAAGAGG+TGG | - | chr3_3:57298014-57298033 | Msa0460230:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 57296597 | 57298042 | 57296597 | ID=Msa0460230;Name=Msa0460230 |
| chr3_3 | mRNA | 57296597 | 57298042 | 57296597 | ID=Msa0460230-mRNA-1;Parent=Msa0460230;Name=Msa0460230-mRNA-1;_AED=0.81;_eAED=1.00;_QI=0|0|0|0.5|0|0|2|0|114 |
| chr3_3 | exon | 57297893 | 57298042 | 57297893 | ID=Msa0460230-mRNA-1:exon:11667;Parent=Msa0460230-mRNA-1 |
| chr3_3 | exon | 57296597 | 57296791 | 57296597 | ID=Msa0460230-mRNA-1:exon:11666;Parent=Msa0460230-mRNA-1 |
| chr3_3 | CDS | 57297893 | 57298042 | 57297893 | ID=Msa0460230-mRNA-1:cds;Parent=Msa0460230-mRNA-1 |
| chr3_3 | CDS | 57296597 | 57296791 | 57296597 | ID=Msa0460230-mRNA-1:cds;Parent=Msa0460230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
