AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0441800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441800 MtrunA17_Chr3g0079511 92.754 138 7 1 70 204 20 157 5.60e-86 250
Msa0441800 MtrunA17_Chr3g0079501 80.702 57 11 0 1 57 1 57 9.22e-27 97.4
Msa0441800 MtrunA17_Chr4g0033921 36.842 133 77 4 74 201 81 211 3.16e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441800 AT2G30695.2 54.815 135 58 1 73 204 63 197 7.63e-47 153
Msa0441800 AT2G30695.3 54.815 135 58 1 73 204 63 197 7.63e-47 153
Msa0441800 AT2G30695.1 54.815 135 58 1 73 204 63 197 7.63e-47 153
Msa0441800 AT2G30695.4 51.724 58 28 0 73 130 63 120 2.51e-14 67.4

Find 54 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATGATGTGTTTCAGAAAA+TGG 0.139014 3_3:+10284405 Msa0441800:CDS
TAACAGTTATGTTATCTTAC+AGG 0.237471 3_3:+10282031 Msa0441800:five_prime_UTR
ACCTCTAATAAAATGTCTTT+TGG 0.275489 3_3:-10285243 None:intergenic
GGAGAAACACAAATGTTCTT+TGG 0.276961 3_3:-10287710 None:intergenic
CCAGGATTTCGTAGAGTAAA+AGG 0.298327 3_3:+10284448 Msa0441800:CDS
CAGATAAGCATCGAGGTATC+TGG 0.342280 3_3:+10284361 Msa0441800:intron
ATGGAGTGACATTGCTTCTT+CGG 0.375429 3_3:+10286329 Msa0441800:three_prime_UTR
TTTATATGTTAAAATCTTAC+CGG 0.375682 3_3:+10286306 Msa0441800:three_prime_UTR
AATACTATTTGAACCCACTT+TGG 0.400074 3_3:-10287629 None:intergenic
CTACAAAATGAATTTAACTT+TGG 0.404253 3_3:+10287524 Msa0441800:three_prime_UTR
TCTGTCTTTCTTTGAAGCAT+GGG 0.424747 3_3:+10282392 Msa0441800:CDS
TTCTGTCTTTCTTTGAAGCA+TGG 0.425898 3_3:+10282391 Msa0441800:CDS
TTGCTTAAATCAAGTGTTTG+AGG 0.431774 3_3:+10282096 Msa0441800:five_prime_UTR
GAAATAAAATTCACAAAGAA+AGG 0.452603 3_3:-10282460 None:intergenic
GAACATTTGTGTTTCTCCAT+AGG 0.469255 3_3:+10287715 Msa0441800:three_prime_UTR
AGATCTTGAAACTACATTTG+AGG 0.477759 3_3:+10286224 Msa0441800:CDS
CTCAACTGTGGCTGAGTATG+TGG 0.495219 3_3:+10285314 Msa0441800:CDS
AAAATCACGGTGGCATTTCG+CGG 0.495444 3_3:+10286431 Msa0441800:three_prime_UTR
CTTTCTTTGAAGCATGGGCA+CGG 0.495628 3_3:+10282397 Msa0441800:CDS
CTCTAACACTCACTCTCCTA+TGG 0.497232 3_3:-10287731 None:intergenic
AAACAATTTCATTCCAAAGT+GGG 0.497975 3_3:+10287616 Msa0441800:three_prime_UTR
AGAAGCAATGTCACTCCATC+CGG 0.498714 3_3:-10286325 None:intergenic
GGACATCACTCTACAAACTC+TGG 0.519633 3_3:+10287477 Msa0441800:three_prime_UTR
ACAACACAGAATTTCAAATG+AGG 0.522251 3_3:-10282147 None:intergenic
GCTTCAAAAGTAGAATTGAC+AGG 0.524464 3_3:+10286281 Msa0441800:exon
CATCTTAAATCTAACTCCAC+AGG 0.526554 3_3:+10282211 Msa0441800:CDS
TATGTTAAAATCTTACCGGA+TGG 0.533410 3_3:+10286310 Msa0441800:three_prime_UTR
TGATGATGTTAGAGAACTAA+AGG 0.538789 3_3:+10283429 Msa0441800:CDS
ACTCTACGAAATCCTGGGAT+CGG 0.550289 3_3:-10284442 None:intergenic
CTTGAAACTACATTTGAGGA+AGG 0.550589 3_3:+10286228 Msa0441800:CDS
AACAGTTATGTTATCTTACA+GGG 0.557820 3_3:+10282032 Msa0441800:five_prime_UTR
GTGGTTATTATCACATATAG+AGG 0.558010 3_3:+10282120 Msa0441800:five_prime_UTR
GATAAAACACAGGCAGAGAG+TGG 0.567975 3_3:+10282333 Msa0441800:CDS
TCCATAGCATTGCTCTTAGG+AGG 0.569679 3_3:-10286502 None:intergenic
AAAACAATTTCATTCCAAAG+TGG 0.573412 3_3:+10287615 Msa0441800:three_prime_UTR
TGCTTCTTCGGTCTGAACCA+AGG 0.577590 3_3:+10286341 Msa0441800:three_prime_UTR
AAAGCTGCACAACCGATCCC+AGG 0.580477 3_3:+10284430 Msa0441800:CDS
ATCTCTTGAAAGCAATGTAG+TGG 0.582364 3_3:+10287555 Msa0441800:three_prime_UTR
TCTCTTAAAATGATTCAAAG+TGG 0.591059 3_3:+10286366 Msa0441800:three_prime_UTR
CTGATTGCTATGAATCATCA+TGG 0.598147 3_3:+10287675 Msa0441800:three_prime_UTR
TACAAACTCTGGAGCAGCCG+CGG 0.613220 3_3:+10287488 Msa0441800:three_prime_UTR
TGTGGCTGAGTATGTGGAGA+AGG 0.628591 3_3:+10285320 Msa0441800:CDS
TAAATCAAGTGTTTGAGGTG+TGG 0.633895 3_3:+10282101 Msa0441800:five_prime_UTR
GGAAATAATCAACTCAACTG+TGG 0.634122 3_3:+10285302 Msa0441800:CDS
GCTTGCAGATGATAAAACAC+AGG 0.649255 3_3:+10282323 Msa0441800:intron
ATCAATGCGTGAGAAAACAT+AGG 0.655741 3_3:+10287456 Msa0441800:three_prime_UTR
TGTCATCTAAGTGAAAATCA+CGG 0.658079 3_3:+10286418 Msa0441800:three_prime_UTR
GTAGTTCTTAAAATCAACCG+CGG 0.706727 3_3:-10287505 None:intergenic
AGCATGGGCACGGTGCAGCG+AGG 0.712524 3_3:+10282407 Msa0441800:CDS
TTCTGTCCAGATAAGCATCG+AGG 0.718719 3_3:+10284354 Msa0441800:intron
GGATTTCGTAGAGTAAAAGG+AGG 0.718882 3_3:+10284451 Msa0441800:CDS
AGTTATGTTATCTTACAGGG+TGG 0.719636 3_3:+10282035 Msa0441800:five_prime_UTR
CATCTAAGTGAAAATCACGG+TGG 0.807475 3_3:+10286421 Msa0441800:three_prime_UTR
TATCTGGAAACAGAACACAG+AGG 0.877907 3_3:+10284377 Msa0441800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTTAATTAT+AGG + chr3_3:10285860-10285879 Msa0441800:intron 0.0%
!!! TATTATTATCATTTTCTATT+TGG - chr3_3:10284685-10284704 None:intergenic 10.0%
!! AACTATAAAAACATAAAAAT+AGG - chr3_3:10284938-10284957 None:intergenic 10.0%
!!! TTGTTTAATATTTCATTTTC+CGG + chr3_3:10283014-10283033 Msa0441800:intron 15.0%
!!! TATTTATGTGGATTTTAAAT+TGG + chr3_3:10284479-10284498 Msa0441800:intron 15.0%
!!! AGAAGATTAATTCATTTTTA+TGG + chr3_3:10285191-10285210 Msa0441800:intron 15.0%
!!! TTTCAAGTATTTTTTTTCAT+TGG + chr3_3:10285893-10285912 Msa0441800:intron 15.0%
!! TTTATATGTTAAAATCTTAC+CGG + chr3_3:10286306-10286325 Msa0441800:three_prime_UTR 15.0%
!! TTATTAAAACATTTCTTAAC+CGG + chr3_3:10286581-10286600 Msa0441800:intron 15.0%
!! TTTAATATAAAAAACATAGC+CGG - chr3_3:10286610-10286629 None:intergenic 15.0%
!!! AATGTAGATTTAAAGTTTAT+TGG + chr3_3:10286928-10286947 Msa0441800:intron 15.0%
!!! ATTTTTTATTATTTGCAAGA+AGG - chr3_3:10287176-10287195 None:intergenic 15.0%
!! GGAAGAAAAAAACAATAAAA+AGG - chr3_3:10282256-10282275 None:intergenic 20.0%
!! GAAATAAAATTCACAAAGAA+AGG - chr3_3:10282463-10282482 None:intergenic 20.0%
!!! GAGGGTTTTTTAATTAAAAT+AGG + chr3_3:10282825-10282844 Msa0441800:intron 20.0%
!! TAATTTCAACTTAAATGAGA+AGG + chr3_3:10282959-10282978 Msa0441800:intron 20.0%
!! CACAAAATAATGAGTAAATT+TGG - chr3_3:10283063-10283082 None:intergenic 20.0%
!!! AAATCCGTTTCTTTTTTATA+GGG + chr3_3:10283205-10283224 Msa0441800:intron 20.0%
!! TAACATGTAAATTATGATCA+AGG - chr3_3:10283318-10283337 None:intergenic 20.0%
!! ATAGCTCAGAAAATTATAAA+CGG + chr3_3:10283573-10283592 Msa0441800:intron 20.0%
!! ATTGAAAATGAGTTTATAAG+TGG + chr3_3:10283668-10283687 Msa0441800:intron 20.0%
!! TTGAAAATGAGTTTATAAGT+GGG + chr3_3:10283669-10283688 Msa0441800:intron 20.0%
!!! TGGATGAGATTTTATAAAAA+TGG + chr3_3:10283867-10283886 Msa0441800:intron 20.0%
!!! GGATGAGATTTTATAAAAAT+GGG + chr3_3:10283868-10283887 Msa0441800:intron 20.0%
!! TAAATTCTAAGTAGACTATA+TGG + chr3_3:10283943-10283962 Msa0441800:intron 20.0%
!! TAAATATGATGTGTACATAA+CGG - chr3_3:10284077-10284096 None:intergenic 20.0%
!! CTAAAAAAGTAAATAGTTTC+TGG - chr3_3:10284564-10284583 None:intergenic 20.0%
!!! TTTTTTTCTCCTTATATCAA+AGG + chr3_3:10284795-10284814 Msa0441800:intron 20.0%
!! AAAGAAAGAAAACTTACATT+TGG - chr3_3:10284887-10284906 None:intergenic 20.0%
!!! TTAATGTCTCTTTTAAAGTT+TGG + chr3_3:10285022-10285041 Msa0441800:intron 20.0%
!!! ATGATTTTTCTTGAATTGTA+AGG + chr3_3:10285073-10285092 Msa0441800:intron 20.0%
!!! TGATTTTTCTTGAATTGTAA+GGG + chr3_3:10285074-10285093 Msa0441800:intron 20.0%
!!! GATAACTTGTTTAAAAACAT+TGG - chr3_3:10285280-10285299 None:intergenic 20.0%
!!! TGTTTTTAAACAAGTTATCA+AGG + chr3_3:10285281-10285300 Msa0441800:CDS 20.0%
!! GAAATACTATAATTAGCAAA+CGG - chr3_3:10285353-10285372 None:intergenic 20.0%
!! AGAACATAAAAGATCATAAA+AGG - chr3_3:10285635-10285654 None:intergenic 20.0%
!!! CAAATGTTTTAGTGTATATT+CGG - chr3_3:10286479-10286498 None:intergenic 20.0%
!!! ATGTTTTAATAACAATGATG+TGG - chr3_3:10286573-10286592 None:intergenic 20.0%
!!! AATTTTCTCATGCAAATAAT+TGG - chr3_3:10286903-10286922 None:intergenic 20.0%
!! TTTATTGGAATAATTTGACT+TGG + chr3_3:10286943-10286962 Msa0441800:intron 20.0%
!! ATGAAATAAAACTAAACTTG+AGG + chr3_3:10287207-10287226 Msa0441800:intron 20.0%
!!! CTACAAAATGAATTTAACTT+TGG + chr3_3:10287524-10287543 Msa0441800:three_prime_UTR 20.0%
! TAACAGTTATGTTATCTTAC+AGG + chr3_3:10282031-10282050 Msa0441800:five_prime_UTR 25.0%
! AACAGTTATGTTATCTTACA+GGG + chr3_3:10282032-10282051 Msa0441800:five_prime_UTR 25.0%
! AAACAATAAAAAGGAGAAAG+AGG - chr3_3:10282247-10282266 None:intergenic 25.0%
! TTTGGATAAACAACCTAATT+CGG + chr3_3:10282565-10282584 Msa0441800:intron 25.0%
!!! CTTATTTCTATAAGTTCTGT+AGG - chr3_3:10282662-10282681 None:intergenic 25.0%
!! ATAGTTTTCCACTTATGAAA+AGG + chr3_3:10282851-10282870 Msa0441800:intron 25.0%
!! TATAAAGACCTTTTCATAAG+TGG - chr3_3:10282862-10282881 None:intergenic 25.0%
! CTTATGAAAAGGTCTTTATA+AGG + chr3_3:10282862-10282881 Msa0441800:intron 25.0%
! TATAAGGTTATAGATGTTCA+TGG + chr3_3:10282878-10282897 Msa0441800:intron 25.0%
! GTTCAAAAACTTCATAGTTA+TGG + chr3_3:10282986-10283005 Msa0441800:intron 25.0%
!!! GAAATCCGTTTCTTTTTTAT+AGG + chr3_3:10283204-10283223 Msa0441800:intron 25.0%
! TGTTCCCTATAAAAAAGAAA+CGG - chr3_3:10283212-10283231 None:intergenic 25.0%
! AGGATTGAAATAACTTATGA+AGG - chr3_3:10283298-10283317 None:intergenic 25.0%
! AAGTTTAAATAGTAAGAGAG+AGG + chr3_3:10283474-10283493 Msa0441800:intron 25.0%
! AGTTTAAATAGTAAGAGAGA+GGG + chr3_3:10283475-10283494 Msa0441800:intron 25.0%
! TAGCTCAGAAAATTATAAAC+GGG + chr3_3:10283574-10283593 Msa0441800:intron 25.0%
! TTCTAGCCATCTTATAATTT+CGG - chr3_3:10283745-10283764 None:intergenic 25.0%
!!! TTACATATTCCATTTGGTTT+TGG - chr3_3:10283983-10284002 None:intergenic 25.0%
! TTCAACTTACATATTCCATT+TGG - chr3_3:10283989-10284008 None:intergenic 25.0%
! ATGATTATTATCAGACTTGT+TGG - chr3_3:10284720-10284739 None:intergenic 25.0%
! ATATTGCTGCAAAAAAATTG+AGG + chr3_3:10284845-10284864 Msa0441800:intron 25.0%
! AATGAAGACATGCATAAAAA+AGG + chr3_3:10284995-10285014 Msa0441800:intron 25.0%
! AGAAAAATCATGTCTTAACA+TGG - chr3_3:10285064-10285083 None:intergenic 25.0%
!! GATTTTTCTTGAATTGTAAG+GGG + chr3_3:10285075-10285094 Msa0441800:intron 25.0%
!! AATACACAGTTTAGTTTAAC+AGG + chr3_3:10285137-10285156 Msa0441800:intron 25.0%
!! ACCAAAAGACATTTTATTAG+AGG + chr3_3:10285242-10285261 Msa0441800:CDS 25.0%
!! ACCTCTAATAAAATGTCTTT+TGG - chr3_3:10285246-10285265 None:intergenic 25.0%
! ACTTGTTTAAAAACATTGGA+AGG - chr3_3:10285276-10285295 None:intergenic 25.0%
! AACATAGCTATGTAATTTAC+TGG - chr3_3:10285391-10285410 None:intergenic 25.0%
! TGACAAATTTGAATGTGTAT+TGG - chr3_3:10285734-10285753 None:intergenic 25.0%
! AGAAGGATATAAACCAATAA+TGG - chr3_3:10285762-10285781 None:intergenic 25.0%
!!! ATTATTGGTTTATATCCTTC+TGG + chr3_3:10285761-10285780 Msa0441800:intron 25.0%
! ACAGTGAAGATTTAATTGAA+TGG - chr3_3:10285824-10285843 None:intergenic 25.0%
!! TTTTGCTTGTTCTGTTAAAA+CGG + chr3_3:10286129-10286148 Msa0441800:intron 25.0%
!!! AATCATTTTAAGAGATTCCT+TGG - chr3_3:10286361-10286380 None:intergenic 25.0%
! TCTCTTAAAATGATTCAAAG+TGG + chr3_3:10286366-10286385 Msa0441800:three_prime_UTR 25.0%
!! CTTTTCCCAAATTTCATAAA+GGG - chr3_3:10286969-10286988 None:intergenic 25.0%
!! TCTTTTCCCAAATTTCATAA+AGG - chr3_3:10286970-10286989 None:intergenic 25.0%
! ATGAAATTTGGGAAAAGATT+TGG + chr3_3:10286972-10286991 Msa0441800:intron 25.0%
! ATATGCTCATAGCAAATAAT+TGG - chr3_3:10287087-10287106 None:intergenic 25.0%
!!! AATTATTTGCTATGAGCATA+TGG + chr3_3:10287086-10287105 Msa0441800:intron 25.0%
!!! ATTATTTGCTATGAGCATAT+GGG + chr3_3:10287087-10287106 Msa0441800:intron 25.0%
! AAACTCATTTACTTGTTTAC+AGG - chr3_3:10287235-10287254 None:intergenic 25.0%
!! TTTTCAGCATGCATATTTTA+AGG + chr3_3:10287415-10287434 Msa0441800:three_prime_UTR 25.0%
!! AATGTAGTGGTATTTTCTTT+TGG + chr3_3:10287568-10287587 Msa0441800:three_prime_UTR 25.0%
! AAAACAATTTCATTCCAAAG+TGG + chr3_3:10287615-10287634 Msa0441800:three_prime_UTR 25.0%
! AAACAATTTCATTCCAAAGT+GGG + chr3_3:10287616-10287635 Msa0441800:three_prime_UTR 25.0%
TTGCTTAAATCAAGTGTTTG+AGG + chr3_3:10282096-10282115 Msa0441800:five_prime_UTR 30.0%
GTGGTTATTATCACATATAG+AGG + chr3_3:10282120-10282139 Msa0441800:five_prime_UTR 30.0%
ACAACACAGAATTTCAAATG+AGG - chr3_3:10282150-10282169 None:intergenic 30.0%
TAAAAAGGAGAAAGAGGAAA+AGG - chr3_3:10282241-10282260 None:intergenic 30.0%
! TTCCATTGTCTTGTTCTTTA+TGG + chr3_3:10282272-10282291 Msa0441800:intron 30.0%
TACCATAAAGAACAAGACAA+TGG - chr3_3:10282277-10282296 None:intergenic 30.0%
!!! GTGGAAGATTTTGTTTTGTA+TGG + chr3_3:10282352-10282371 Msa0441800:CDS 30.0%
AATAAGCAGAAAACAACTCA+TGG + chr3_3:10282676-10282695 Msa0441800:intron 30.0%
! AGACTATTTGAGAAAGCATA+TGG - chr3_3:10282720-10282739 None:intergenic 30.0%
!! GATTAGCTTTAAGCTTATGA+GGG + chr3_3:10282807-10282826 Msa0441800:intron 30.0%
! ATTTCTCAATACTAACTTGC+CGG - chr3_3:10283036-10283055 None:intergenic 30.0%
! TGATGATGTTAGAGAACTAA+AGG + chr3_3:10283429-10283448 Msa0441800:CDS 30.0%
GGAGAAAAATCATAGAAGAT+AGG + chr3_3:10283508-10283527 Msa0441800:intron 30.0%
TCAGAAAATTATAAACGGGA+TGG + chr3_3:10283578-10283597 Msa0441800:intron 30.0%
CAGAAAATTATAAACGGGAT+GGG + chr3_3:10283579-10283598 Msa0441800:intron 30.0%
AGAAAATTATAAACGGGATG+GGG + chr3_3:10283580-10283599 Msa0441800:intron 30.0%
! ATGTGGATTTTAAATTGGCA+TGG + chr3_3:10284484-10284503 Msa0441800:intron 30.0%
ACGTTAGTAGATATCATGAA+AGG + chr3_3:10284599-10284618 Msa0441800:intron 30.0%
!! TAGATATCATGAAAGGTACT+TGG + chr3_3:10284606-10284625 Msa0441800:intron 30.0%
!! AGATATCATGAAAGGTACTT+GGG + chr3_3:10284607-10284626 Msa0441800:intron 30.0%
! AATATCTGGTTAGTCAAACT+TGG - chr3_3:10284639-10284658 None:intergenic 30.0%
AATGTCAGTCCTTTGATATA+AGG - chr3_3:10284807-10284826 None:intergenic 30.0%
! ATGTAAAGTACAAAGTACTC+TGG - chr3_3:10285489-10285508 None:intergenic 30.0%
! AAGGAAAAACTGACAGATTT+TGG - chr3_3:10285616-10285635 None:intergenic 30.0%
ATTTGTCACATCACCATTAT+TGG + chr3_3:10285746-10285765 Msa0441800:intron 30.0%
ACTGTACTAAAAAAACCAGA+AGG - chr3_3:10285779-10285798 None:intergenic 30.0%
!!! TCTGGTTTTTTTAGTACAGT+TGG + chr3_3:10285779-10285798 Msa0441800:intron 30.0%
!! TTTTTAGTACAGTTGGTGTT+TGG + chr3_3:10285786-10285805 Msa0441800:intron 30.0%
! AAAATACTTGAAAGAGCACA+TGG - chr3_3:10285886-10285905 None:intergenic 30.0%
! TGCTGATTGTAGAAAATAGT+GGG - chr3_3:10286070-10286089 None:intergenic 30.0%
! TTGCTGATTGTAGAAAATAG+TGG - chr3_3:10286071-10286090 None:intergenic 30.0%
AGATCTTGAAACTACATTTG+AGG + chr3_3:10286224-10286243 Msa0441800:CDS 30.0%
TATGTTAAAATCTTACCGGA+TGG + chr3_3:10286310-10286329 Msa0441800:three_prime_UTR 30.0%
TGTCATCTAAGTGAAAATCA+CGG + chr3_3:10286418-10286437 Msa0441800:three_prime_UTR 30.0%
TCAATAGTATTCCATCAGAT+TGG + chr3_3:10286758-10286777 Msa0441800:intron 30.0%
CAATAGTATTCCATCAGATT+GGG + chr3_3:10286759-10286778 Msa0441800:intron 30.0%
TGCAAATAATTGGCAGATAT+GGG - chr3_3:10286893-10286912 None:intergenic 30.0%
ATGCAAATAATTGGCAGATA+TGG - chr3_3:10286894-10286913 None:intergenic 30.0%
!!! TTGGGAAAAGATTTGGTTTT+TGG + chr3_3:10286979-10286998 Msa0441800:intron 30.0%
AATTGGCAGAAATAAGGATT+TGG - chr3_3:10287070-10287089 None:intergenic 30.0%
GCAAATAATTGGCAGAAATA+AGG - chr3_3:10287076-10287095 None:intergenic 30.0%
! CTTTTCATAAACTGAAACTG+TGG - chr3_3:10287359-10287378 None:intergenic 30.0%
AATACTATTTGAACCCACTT+TGG - chr3_3:10287632-10287651 None:intergenic 30.0%
AGTTATGTTATCTTACAGGG+TGG + chr3_3:10282035-10282054 Msa0441800:five_prime_UTR 35.0%
! TAAATCAAGTGTTTGAGGTG+TGG + chr3_3:10282101-10282120 Msa0441800:five_prime_UTR 35.0%
CATCTTAAATCTAACTCCAC+AGG + chr3_3:10282211-10282230 Msa0441800:CDS 35.0%
!! TTCTGTCTTTCTTTGAAGCA+TGG + chr3_3:10282391-10282410 Msa0441800:CDS 35.0%
!! TCTGTCTTTCTTTGAAGCAT+GGG + chr3_3:10282392-10282411 Msa0441800:CDS 35.0%
ATACTATGTAACATGACCTG+AGG + chr3_3:10282505-10282524 Msa0441800:intron 35.0%
TACTATGTAACATGACCTGA+GGG + chr3_3:10282506-10282525 Msa0441800:intron 35.0%
GAACGTCATATTCTTGACTT+AGG + chr3_3:10282537-10282556 Msa0441800:intron 35.0%
TTCTTGACTTAGGACATGTT+TGG + chr3_3:10282547-10282566 Msa0441800:intron 35.0%
TATAATCCAAACAGTTCCGT+AGG + chr3_3:10282775-10282794 Msa0441800:intron 35.0%
GCTTAAAGCTAATCCAAGAA+GGG - chr3_3:10282801-10282820 None:intergenic 35.0%
AGCTTAAAGCTAATCCAAGA+AGG - chr3_3:10282802-10282821 None:intergenic 35.0%
!! GGATTAGCTTTAAGCTTATG+AGG + chr3_3:10282806-10282825 Msa0441800:intron 35.0%
TCTCACATTCTTTGATTGCT+CGG + chr3_3:10283107-10283126 Msa0441800:intron 35.0%
! AATTTCTTCTGCTCGTTTTG+AGG + chr3_3:10283381-10283400 Msa0441800:CDS 35.0%
TTAAATAGTAAGAGAGAGGG+AGG + chr3_3:10283478-10283497 Msa0441800:intron 35.0%
TAAATAGTAAGAGAGAGGGA+GGG + chr3_3:10283479-10283498 Msa0441800:intron 35.0%
AATCATAGAAGATAGGCAGA+AGG + chr3_3:10283515-10283534 Msa0441800:intron 35.0%
ATCATAGAAGATAGGCAGAA+GGG + chr3_3:10283516-10283535 Msa0441800:intron 35.0%
! AGGGAATCAAAGGCATAATA+TGG + chr3_3:10283535-10283554 Msa0441800:intron 35.0%
! GAATCAAAGGCATAATATGG+TGG + chr3_3:10283538-10283557 Msa0441800:intron 35.0%
AAAACCAACTTATAGAGGGA+GGG - chr3_3:10283701-10283720 None:intergenic 35.0%
CAGCAAAACCAACTTATAGA+GGG - chr3_3:10283705-10283724 None:intergenic 35.0%
GCCATCTTATAATTTCGGTT+GGG - chr3_3:10283740-10283759 None:intergenic 35.0%
AGCCATCTTATAATTTCGGT+TGG - chr3_3:10283741-10283760 None:intergenic 35.0%
AAAGTCCATCAAAGATCCAT+TGG + chr3_3:10283763-10283782 Msa0441800:intron 35.0%
AAGTCCATCAAAGATCCATT+GGG + chr3_3:10283764-10283783 Msa0441800:intron 35.0%
AATCCTACCAAATAGACTTG+TGG - chr3_3:10283908-10283927 None:intergenic 35.0%
TGAGTTAGACCAAAACCAAA+TGG + chr3_3:10283971-10283990 Msa0441800:intron 35.0%
! TAAGTTGAAGTACAGCTGAT+TGG + chr3_3:10284000-10284019 Msa0441800:intron 35.0%
GTCATCACATCTAACTTCTA+AGG + chr3_3:10284277-10284296 Msa0441800:intron 35.0%
CGATGATGTGTTTCAGAAAA+TGG + chr3_3:10284405-10284424 Msa0441800:CDS 35.0%
! CTTTTACTCTACGAAATCCT+GGG - chr3_3:10284450-10284469 None:intergenic 35.0%
! AAGGAGGTGAAGTATTTATG+TGG + chr3_3:10284467-10284486 Msa0441800:intron 35.0%
! TGTTCTCTTTTCCTTTGCTA+AGG - chr3_3:10284530-10284549 None:intergenic 35.0%
!! GATATCATGAAAGGTACTTG+GGG + chr3_3:10284608-10284627 Msa0441800:intron 35.0%
!!! ATCAGACTTGTTGGTGATTT+TGG - chr3_3:10284711-10284730 None:intergenic 35.0%
! TTCGAAAGAAAACCGTTTTG+AGG - chr3_3:10284770-10284789 None:intergenic 35.0%
CAAAAAAATTGAGGACAACC+AGG + chr3_3:10284854-10284873 Msa0441800:intron 35.0%
!!! GACATTTTATTAGAGGTGCT+TGG + chr3_3:10285249-10285268 Msa0441800:CDS 35.0%
GGAAATAATCAACTCAACTG+TGG + chr3_3:10285302-10285321 Msa0441800:CDS 35.0%
AGAACATCTTCTGTTGTCTA+AGG + chr3_3:10285585-10285604 Msa0441800:intron 35.0%
TGTGTATTGGAAACCCTATT+CGG - chr3_3:10285721-10285740 None:intergenic 35.0%
!! CACAAAGTGTTGTCAAATAG+TGG + chr3_3:10286000-10286019 Msa0441800:intron 35.0%
TTGTCAAATAGTGGCTATAG+CGG + chr3_3:10286009-10286028 Msa0441800:intron 35.0%
CTGTTAAAACGGATATTTGC+TGG + chr3_3:10286140-10286159 Msa0441800:intron 35.0%
TTTGCTGGAAAATTCTTTGC+AGG + chr3_3:10286155-10286174 Msa0441800:intron 35.0%
CTTGAAACTACATTTGAGGA+AGG + chr3_3:10286228-10286247 Msa0441800:CDS 35.0%
GCTTCAAAAGTAGAATTGAC+AGG + chr3_3:10286281-10286300 Msa0441800:exon 35.0%
TAACAATGATGTGGACCAAT+AGG - chr3_3:10286564-10286583 None:intergenic 35.0%
TTTCTTTGCTGAGTGACTTA+AGG - chr3_3:10286853-10286872 None:intergenic 35.0%
ACTTGGCCCTTTATGAAATT+TGG + chr3_3:10286960-10286979 Msa0441800:intron 35.0%
CTTGGCCCTTTATGAAATTT+GGG + chr3_3:10286961-10286980 Msa0441800:intron 35.0%
! TGAAACTTGAAGGTTGGTTA+TGG + chr3_3:10287026-10287045 Msa0441800:intron 35.0%
! GAAACTTGAAGGTTGGTTAT+GGG + chr3_3:10287027-10287046 Msa0441800:intron 35.0%
! AAACTTGAAGGTTGGTTATG+GGG + chr3_3:10287028-10287047 Msa0441800:intron 35.0%
! TATGTTTTCTCACGCATTGA+TGG - chr3_3:10287457-10287476 None:intergenic 35.0%
ATCAATGCGTGAGAAAACAT+AGG + chr3_3:10287456-10287475 Msa0441800:three_prime_UTR 35.0%
GTAGTTCTTAAAATCAACCG+CGG - chr3_3:10287508-10287527 None:intergenic 35.0%
ATCTCTTGAAAGCAATGTAG+TGG + chr3_3:10287555-10287574 Msa0441800:three_prime_UTR 35.0%
CTGATTGCTATGAATCATCA+TGG + chr3_3:10287675-10287694 Msa0441800:three_prime_UTR 35.0%
GGAGAAACACAAATGTTCTT+TGG - chr3_3:10287713-10287732 None:intergenic 35.0%
GAACATTTGTGTTTCTCCAT+AGG + chr3_3:10287715-10287734 Msa0441800:three_prime_UTR 35.0%
AAGAGGAAAAGGTTAACCTG+TGG - chr3_3:10282230-10282249 None:intergenic 40.0%
GCTTGCAGATGATAAAACAC+AGG + chr3_3:10282323-10282342 Msa0441800:intron 40.0%
TATGATGAGCAGACCGAATT+AGG - chr3_3:10282581-10282600 None:intergenic 40.0%
TCATGGAGAAGTTAAACCGA+CGG + chr3_3:10282895-10282914 Msa0441800:intron 40.0%
CTCACATTCTTTGATTGCTC+GGG + chr3_3:10283108-10283127 Msa0441800:intron 40.0%
TCACATTCTTTGATTGCTCG+GGG + chr3_3:10283109-10283128 Msa0441800:intron 40.0%
GCAGACAGAGAAAGAAAAAC+TGG - chr3_3:10283273-10283292 None:intergenic 40.0%
TTATAAACGGGATGGGGTTA+TGG + chr3_3:10283586-10283605 Msa0441800:intron 40.0%
TATAAACGGGATGGGGTTAT+GGG + chr3_3:10283587-10283606 Msa0441800:intron 40.0%
TTAACACTGGTCATTGGTCA+TGG - chr3_3:10283639-10283658 None:intergenic 40.0%
TGACTCTTAACACTGGTCAT+TGG - chr3_3:10283645-10283664 None:intergenic 40.0%
CAATGTGTGACTCTTAACAC+TGG - chr3_3:10283652-10283671 None:intergenic 40.0%
CAAAACCAACTTATAGAGGG+AGG - chr3_3:10283702-10283721 None:intergenic 40.0%
CCAGCAAAACCAACTTATAG+AGG - chr3_3:10283706-10283725 None:intergenic 40.0%
!!! CCTCTATAAGTTGGTTTTGC+TGG + chr3_3:10283703-10283722 Msa0441800:intron 40.0%
GCCCAACCGAAATTATAAGA+TGG + chr3_3:10283736-10283755 Msa0441800:intron 40.0%
GTGTGTTACGAGTTCTACAT+TGG + chr3_3:10283847-10283866 Msa0441800:intron 40.0%
TCTCCACAAGTCTATTTGGT+AGG + chr3_3:10283902-10283921 Msa0441800:intron 40.0%
TTGAAGTACAGCTGATTGGT+AGG + chr3_3:10284004-10284023 Msa0441800:intron 40.0%
CGACAAAAGATCGAATTGCA+AGG + chr3_3:10284178-10284197 Msa0441800:intron 40.0%
TATCTGGAAACAGAACACAG+AGG + chr3_3:10284377-10284396 Msa0441800:CDS 40.0%
! CCTTTTACTCTACGAAATCC+TGG - chr3_3:10284451-10284470 None:intergenic 40.0%
CCAGGATTTCGTAGAGTAAA+AGG + chr3_3:10284448-10284467 Msa0441800:CDS 40.0%
GGATTTCGTAGAGTAAAAGG+AGG + chr3_3:10284451-10284470 Msa0441800:CDS 40.0%
! CAGATTGATAGCCTTAGCAA+AGG + chr3_3:10284516-10284535 Msa0441800:intron 40.0%
GACTAACCAGATATTACGTG+CGG + chr3_3:10284644-10284663 Msa0441800:intron 40.0%
AAACTTCCGCACGTAATATC+TGG - chr3_3:10284653-10284672 None:intergenic 40.0%
TGTCATCTGACTCCTCAAAA+CGG + chr3_3:10284755-10284774 Msa0441800:intron 40.0%
! GACATTTTTCACGTGCTTCT+TGG + chr3_3:10284821-10284840 Msa0441800:intron 40.0%
! CTTACATTTGGCGTTTTTCC+TGG - chr3_3:10284875-10284894 None:intergenic 40.0%
! TTCATTGATACACACCGACT+TGG - chr3_3:10284981-10285000 None:intergenic 40.0%
!! ACCATGCTTGCTATTACACA+AGG + chr3_3:10285456-10285475 Msa0441800:intron 40.0%
TCCTTGTGTAATAGCAAGCA+TGG - chr3_3:10285460-10285479 None:intergenic 40.0%
ATGCTACCTAAAAGGCTTCA+AGG - chr3_3:10285529-10285548 None:intergenic 40.0%
!! GAAGCCTTTTAGGTAGCATT+TGG + chr3_3:10285530-10285549 Msa0441800:intron 40.0%
ACATCTTCTGTTGTCTAAGG+TGG + chr3_3:10285588-10285607 Msa0441800:intron 40.0%
AAATATCCTGCCTACCGAAT+AGG + chr3_3:10285704-10285723 Msa0441800:intron 40.0%
AATATCCTGCCTACCGAATA+GGG + chr3_3:10285705-10285724 Msa0441800:intron 40.0%
TATTGGAAACCCTATTCGGT+AGG - chr3_3:10285717-10285736 None:intergenic 40.0%
TGGTCAGAGTTGTCAAATAG+TGG + chr3_3:10285913-10285932 Msa0441800:intron 40.0%
GCTATAGCACTATAGTACAG+TGG + chr3_3:10285937-10285956 Msa0441800:intron 40.0%
! TTTGTGCTGATGGCATATAG+CGG - chr3_3:10285986-10286005 None:intergenic 40.0%
TTGACAACACTTTGTGCTGA+TGG - chr3_3:10285996-10286015 None:intergenic 40.0%
ATGGAGTGACATTGCTTCTT+CGG + chr3_3:10286329-10286348 Msa0441800:three_prime_UTR 40.0%
CATCTAAGTGAAAATCACGG+TGG + chr3_3:10286421-10286440 Msa0441800:three_prime_UTR 40.0%
TTGACCACTTTCCTTCCTAT+TGG + chr3_3:10286546-10286565 Msa0441800:intron 40.0%
AATGATGTGGACCAATAGGA+AGG - chr3_3:10286560-10286579 None:intergenic 40.0%
AACATTTCTTAACCGGCAAC+CGG + chr3_3:10286588-10286607 Msa0441800:intron 40.0%
TAAAAAACATAGCCGGTTGC+CGG - chr3_3:10286603-10286622 None:intergenic 40.0%
! GACAAGAAGCTCAATTTTGC+AGG + chr3_3:10286794-10286813 Msa0441800:intron 40.0%
TTGGCAGATATGGGTTTGAA+TGG - chr3_3:10286884-10286903 None:intergenic 40.0%
TTATGGGGTTGTTGTGATAC+CGG + chr3_3:10287043-10287062 Msa0441800:intron 40.0%
GCAGAAATAAGGATTTGGAC+CGG - chr3_3:10287065-10287084 None:intergenic 40.0%
TTGCAAGAAGGAAGAAGATC+TGG - chr3_3:10287164-10287183 None:intergenic 40.0%
! GTTTAAAGAGAAGTGTGACG+TGG + chr3_3:10287251-10287270 Msa0441800:intron 40.0%
GATAAAACACAGGCAGAGAG+TGG + chr3_3:10282333-10282352 Msa0441800:CDS 45.0%
!! CTTTCTTTGAAGCATGGGCA+CGG + chr3_3:10282397-10282416 Msa0441800:CDS 45.0%
!! GTGCAGCGAGGATTTTGAAA+AGG + chr3_3:10282419-10282438 Msa0441800:CDS 45.0%
CATGGAGAAGTTAAACCGAC+GGG + chr3_3:10282896-10282915 Msa0441800:intron 45.0%
CCTGATAACACAGAAGCAGT+AGG - chr3_3:10283248-10283267 None:intergenic 45.0%
CCTACTGCTTCTGTGTTATC+AGG + chr3_3:10283245-10283264 Msa0441800:intron 45.0%
GATAGGCAGAAGGGAATCAA+AGG + chr3_3:10283525-10283544 Msa0441800:intron 45.0%
TCATCCCTCCCTCTATAAGT+TGG + chr3_3:10283694-10283713 Msa0441800:intron 45.0%
GTGTCCCAATGGATCTTTGA+TGG - chr3_3:10283771-10283790 None:intergenic 45.0%
ATGTCCAATCCTAGGTGTGA+GGG + chr3_3:10283822-10283841 Msa0441800:intron 45.0%
CCAAATAGACTTGTGGAGAG+AGG - chr3_3:10283901-10283920 None:intergenic 45.0%
CCTCTCTCCACAAGTCTATT+TGG + chr3_3:10283898-10283917 Msa0441800:intron 45.0%
! TTCTGTCCAGATAAGCATCG+AGG + chr3_3:10284354-10284373 Msa0441800:intron 45.0%
CAGATACCTCGATGCTTATC+TGG - chr3_3:10284363-10284382 None:intergenic 45.0%
!! CAGATAAGCATCGAGGTATC+TGG + chr3_3:10284361-10284380 Msa0441800:intron 45.0%
ACTCTACGAAATCCTGGGAT+CGG - chr3_3:10284445-10284464 None:intergenic 45.0%
! ACGTGCGGAAGTTTTCTGTT+TGG + chr3_3:10284659-10284678 Msa0441800:intron 45.0%
!! ATTGATACACACCGACTTGG+TGG - chr3_3:10284978-10284997 None:intergenic 45.0%
AAAAGGCTTCAAGGTGGCTA+TGG - chr3_3:10285520-10285539 None:intergenic 45.0%
! TAGCCACCTTGAAGCCTTTT+AGG + chr3_3:10285520-10285539 Msa0441800:intron 45.0%
CTACCTAAAAGGCTTCAAGG+TGG - chr3_3:10285526-10285545 None:intergenic 45.0%
CACGCCAAATGCTACCTAAA+AGG - chr3_3:10285537-10285556 None:intergenic 45.0%
AGAAGCAATGTCACTCCATC+CGG - chr3_3:10286328-10286347 None:intergenic 45.0%
AAAATCACGGTGGCATTTCG+CGG + chr3_3:10286431-10286450 Msa0441800:three_prime_UTR 45.0%
TCCTCCTAAGAGCAATGCTA+TGG + chr3_3:10286501-10286520 Msa0441800:intron 45.0%
TCCATAGCATTGCTCTTAGG+AGG - chr3_3:10286505-10286524 None:intergenic 45.0%
CTGTCCATAGCATTGCTCTT+AGG - chr3_3:10286508-10286527 None:intergenic 45.0%
TGGACCAATAGGAAGGAAAG+TGG - chr3_3:10286553-10286572 None:intergenic 45.0%
!! TGATTTGAGGCATTGCGTAG+GGG - chr3_3:10286662-10286681 None:intergenic 45.0%
!! GTGATTTGAGGCATTGCGTA+GGG - chr3_3:10286663-10286682 None:intergenic 45.0%
! CGTCAAGCTTTGGTGATTTG+AGG - chr3_3:10286675-10286694 None:intergenic 45.0%
GTGACTTAAGGACTGAGTTG+TGG - chr3_3:10286841-10286860 None:intergenic 45.0%
! ATGGGTTGTTGTGATAGCCA+TGG + chr3_3:10287105-10287124 Msa0441800:intron 45.0%
TGGGTTGTTGTGATAGCCAT+GGG + chr3_3:10287106-10287125 Msa0441800:intron 45.0%
ATCAGTCGCTTGTACACTCT+CGG - chr3_3:10287301-10287320 None:intergenic 45.0%
ATGGCTCTTCCTCCTAATGA+TGG + chr3_3:10287327-10287346 Msa0441800:intron 45.0%
TGGTGTTCACCATCATTAGG+AGG - chr3_3:10287339-10287358 None:intergenic 45.0%
CTGTGGTGTTCACCATCATT+AGG - chr3_3:10287342-10287361 None:intergenic 45.0%
GGACATCACTCTACAAACTC+TGG + chr3_3:10287477-10287496 Msa0441800:three_prime_UTR 45.0%
GCTAATCCAAGAAGGGCCTA+CGG - chr3_3:10282794-10282813 None:intergenic 50.0%
AGTTAAACCGACGGGACTAC+AGG + chr3_3:10282904-10282923 Msa0441800:intron 50.0%
CGGGGAAACTAATCCTCACA+TGG + chr3_3:10283127-10283146 Msa0441800:intron 50.0%
CACATGCATAGTGCCATGTG+AGG - chr3_3:10283143-10283162 None:intergenic 50.0%
ATAGTAAGAGAGAGGGAGGG+AGG + chr3_3:10283482-10283501 Msa0441800:intron 50.0%
TAGTAAGAGAGAGGGAGGGA+GGG + chr3_3:10283483-10283502 Msa0441800:intron 50.0%
CTGGTCATTGGTCATGGACT+CGG - chr3_3:10283633-10283652 None:intergenic 50.0%
TCCATTGGGACACCCACTAT+CGG + chr3_3:10283778-10283797 Msa0441800:intron 50.0%
TGCTCCAGATGTCCAATCCT+AGG + chr3_3:10283814-10283833 Msa0441800:intron 50.0%
CACACCTAGGATTGGACATC+TGG - chr3_3:10283821-10283840 None:intergenic 50.0%
GATGTCCAATCCTAGGTGTG+AGG + chr3_3:10283821-10283840 Msa0441800:intron 50.0%
ACATCCCTCACACCTAGGAT+TGG - chr3_3:10283829-10283848 None:intergenic 50.0%
AACACACATCCCTCACACCT+AGG - chr3_3:10283834-10283853 None:intergenic 50.0%
AGCAACCTTGACCACCAAGT+CGG + chr3_3:10284964-10284983 Msa0441800:intron 50.0%
CTCAACTGTGGCTGAGTATG+TGG + chr3_3:10285314-10285333 Msa0441800:CDS 50.0%
TGTGGCTGAGTATGTGGAGA+AGG + chr3_3:10285320-10285339 Msa0441800:CDS 50.0%
TGCTTCTTCGGTCTGAACCA+AGG + chr3_3:10286341-10286360 Msa0441800:three_prime_UTR 50.0%
!! GGTGATTTGAGGCATTGCGT+AGG - chr3_3:10286664-10286683 None:intergenic 50.0%
ACCAAAGCTTGACGTAGTCG+TGG + chr3_3:10286681-10286700 Msa0441800:intron 50.0%
CCAAAGCTTGACGTAGTCGT+GGG + chr3_3:10286682-10286701 Msa0441800:intron 50.0%
GTAGTCGTGGGAAGGACAAT+TGG + chr3_3:10286694-10286713 Msa0441800:intron 50.0%
AGGGGCTGAAACTTGAAGGT+TGG + chr3_3:10287020-10287039 Msa0441800:intron 50.0%
!! TAGCCATGGGTGTTGCTACA+TGG + chr3_3:10287119-10287138 Msa0441800:intron 50.0%
!! AGCCATGGGTGTTGCTACAT+GGG + chr3_3:10287120-10287139 Msa0441800:intron 50.0%
CGGACACTCTCTCATGGATT+GGG - chr3_3:10287277-10287296 None:intergenic 50.0%
!! CCAATCCATGAGAGAGTGTC+CGG + chr3_3:10287275-10287294 Msa0441800:intron 50.0%
ACAAGCGACTGATGCTAGCA+TGG + chr3_3:10287308-10287327 Msa0441800:intron 50.0%
GTAACATGACCTGAGGGCTG+AGG + chr3_3:10282512-10282531 Msa0441800:intron 55.0%
GAAGGGCCTACGGAACTGTT+TGG - chr3_3:10282784-10282803 None:intergenic 55.0%
ACAGTTCCGTAGGCCCTTCT+TGG + chr3_3:10282785-10282804 Msa0441800:intron 55.0%
AAGCTCTCCTGTAGTCCCGT+CGG - chr3_3:10282914-10282933 None:intergenic 55.0%
CCATTGGGACACCCACTATC+GGG + chr3_3:10283779-10283798 Msa0441800:intron 55.0%
AAAGCTGCACAACCGATCCC+AGG + chr3_3:10284430-10284449 Msa0441800:CDS 55.0%
!! ACACACCGACTTGGTGGTCA+AGG - chr3_3:10284972-10284991 None:intergenic 55.0%
GGAAACCCTATTCGGTAGGC+AGG - chr3_3:10285713-10285732 None:intergenic 55.0%
CCCACGACTACGTCAAGCTT+TGG - chr3_3:10286685-10286704 None:intergenic 55.0%
AGCTTGACGTAGTCGTGGGA+AGG + chr3_3:10286686-10286705 Msa0441800:intron 55.0%
CAGTCTCGCACCCAATCTGA+TGG - chr3_3:10286772-10286791 None:intergenic 55.0%
CACCCATGTAGCAACACCCA+TGG - chr3_3:10287125-10287144 None:intergenic 55.0%
CCGGACACTCTCTCATGGAT+TGG - chr3_3:10287278-10287297 None:intergenic 55.0%
!! TACAAACTCTGGAGCAGCCG+CGG + chr3_3:10287488-10287507 Msa0441800:three_prime_UTR 55.0%
TAAGAGAGAGGGAGGGAGGG+AGG + chr3_3:10283486-10283505 Msa0441800:intron 60.0%
AAGAGAGAGGGAGGGAGGGA+GGG + chr3_3:10283487-10283506 Msa0441800:intron 60.0%
!! CCCGATAGTGGGTGTCCCAA+TGG - chr3_3:10283782-10283801 None:intergenic 60.0%
ACACCCACTATCGGGCTGCT+CGG + chr3_3:10283787-10283806 Msa0441800:intron 60.0%
GTCGCTTGTACACTCTCGGC+CGG - chr3_3:10287297-10287316 None:intergenic 60.0%
GACGTTCAGCCTCAGCCCTC+AGG - chr3_3:10282524-10282543 None:intergenic 65.0%
CACCCACTATCGGGCTGCTC+GGG + chr3_3:10283788-10283807 Msa0441800:intron 65.0%
GACCCGAGCAGCCCGATAGT+GGG - chr3_3:10283793-10283812 None:intergenic 65.0%
TGACCCGAGCAGCCCGATAG+TGG - chr3_3:10283794-10283813 None:intergenic 65.0%
CTCGGCCGGACACTCTCTCA+TGG - chr3_3:10287283-10287302 None:intergenic 65.0%
AGCATGGGCACGGTGCAGCG+AGG + chr3_3:10282407-10282426 Msa0441800:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 10282020 10287741 10282020 ID=Msa0441800;Name=Msa0441800
chr3_3 mRNA 10282020 10287741 10282020 ID=Msa0441800-mRNA-1;Parent=Msa0441800;Name=Msa0441800-mRNA-1;_AED=0.17;_eAED=0.17;_QI=168|0.66|0.71|1|0.66|0.57|7|614|204
chr3_3 exon 10282020 10282232 10282020 ID=Msa0441800-mRNA-1:exon:2251;Parent=Msa0441800-mRNA-1
chr3_3 exon 10282331 10282490 10282331 ID=Msa0441800-mRNA-1:exon:2252;Parent=Msa0441800-mRNA-1
chr3_3 exon 10283374 10283450 10283374 ID=Msa0441800-mRNA-1:exon:2253;Parent=Msa0441800-mRNA-1
chr3_3 exon 10284364 10284477 10284364 ID=Msa0441800-mRNA-1:exon:2254;Parent=Msa0441800-mRNA-1
chr3_3 exon 10285240 10285341 10285240 ID=Msa0441800-mRNA-1:exon:2255;Parent=Msa0441800-mRNA-1
chr3_3 exon 10286177 10286511 10286177 ID=Msa0441800-mRNA-1:exon:2256;Parent=Msa0441800-mRNA-1
chr3_3 exon 10287346 10287741 10287346 ID=Msa0441800-mRNA-1:exon:2257;Parent=Msa0441800-mRNA-1
chr3_3 five_prime_UTR 10282020 10282187 10282020 ID=Msa0441800-mRNA-1:five_prime_utr;Parent=Msa0441800-mRNA-1
chr3_3 CDS 10282188 10282232 10282188 ID=Msa0441800-mRNA-1:cds;Parent=Msa0441800-mRNA-1
chr3_3 CDS 10282331 10282490 10282331 ID=Msa0441800-mRNA-1:cds;Parent=Msa0441800-mRNA-1
chr3_3 CDS 10283374 10283450 10283374 ID=Msa0441800-mRNA-1:cds;Parent=Msa0441800-mRNA-1
chr3_3 CDS 10284364 10284477 10284364 ID=Msa0441800-mRNA-1:cds;Parent=Msa0441800-mRNA-1
chr3_3 CDS 10285240 10285341 10285240 ID=Msa0441800-mRNA-1:cds;Parent=Msa0441800-mRNA-1
chr3_3 CDS 10286177 10286293 10286177 ID=Msa0441800-mRNA-1:cds;Parent=Msa0441800-mRNA-1
chr3_3 three_prime_UTR 10286294 10286511 10286294 ID=Msa0441800-mRNA-1:three_prime_utr;Parent=Msa0441800-mRNA-1
chr3_3 three_prime_UTR 10287346 10287741 10287346 ID=Msa0441800-mRNA-1:three_prime_utr;Parent=Msa0441800-mRNA-1
Gene Sequence

>Msa0441800

ATGCATACAGCATCTCAAAGCTTCATCTTAAATCTAACTCCACAGATGATAAAACACAGGCAGAGAGTGGAAGATTTTGTTTTGTATGGCTCGAATTCTAGACATTTCTGTCTTTCTTTGAAGCATGGGCACGGTGCAGCGAGGATTTTGAAAAGGCATTATTTTTTTTTTCTTCCTTTCTTTGTGAATTTTATTTCAGTTGCATATACTGAAATTTCTTCTGCTCGTTTTGAGGAGTTCTCTGTCTCTACTGTTGACACTGATGATGTTAGAGAACTAAAGATAAGCATCGAGGTATCTGGAAACAGAACACAGAGGACTTTCGATGATGTGTTTCAGAAAATGGTAAAAGCTGCACAACCGATCCCAGGATTTCGTAGAGTAAAAGGAGGTGAAATACCAAAAGACATTTTATTAGAGGTGCTTGGACCTTCCAATGTTTTTAAACAAGTTATCAAGGAAATAATCAACTCAACTGTGGCTGAGTATGTGGAGAAGGAGAGTTTAAGAGTCAGCAGTGACTTGAGAGTTGAGCAAAGCTTTGAAGATCTTGAAACTACATTTGAGGAAGGAGAAAAGTTTAGCTTTGATGTTGTACTTCAGCTTCAAAAGTAG
Protein sequence

>Msa0441800

MHTASQSFILNLTPQMIKHRQRVEDFVLYGSNSRHFCLSLKHGHGAARILKRHYFFFLPFFVNFISVAYTEISSARFEEFSVSTVDTDDVRELKISIEVSGNRTQRTFDDVFQKMVKAAQPIPGFRRVKGGEIPKDILLEVLGPSNVFKQVIKEIINSTVAEYVEKESLRVSSDLRVEQSFEDLETTFEEGEKFSFDVVLQLQK*