AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744450 MtrunA17_Chr5g0447981 96.296 162 5 1 1 161 1 162 4.87e-113 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744450 AT2G04790.10 62.069 145 52 2 15 156 36 180 6.53e-65 197
Msa0744450 AT2G04790.15 62.069 145 52 2 15 156 34 178 8.22e-65 196
Msa0744450 AT2G04790.2 62.069 145 52 2 15 156 17 161 1.06e-64 195
Msa0744450 AT2G04790.13 65.152 132 43 2 15 143 36 167 1.10e-61 188
Msa0744450 AT2G04790.14 65.152 132 43 2 15 143 34 165 1.19e-61 188
Msa0744450 AT2G04790.1 65.152 132 43 2 15 143 17 148 1.93e-61 187
Msa0744450 AT2G04790.9 64.935 77 25 1 15 89 36 112 6.21e-32 111
Msa0744450 AT2G04790.12 64.935 77 25 1 15 89 36 112 6.21e-32 111
Msa0744450 AT2G04790.3 64.935 77 25 1 15 89 17 93 1.04e-31 109
Msa0744450 AT2G04790.4 64.935 77 25 1 15 89 17 93 1.04e-31 109
Msa0744450 AT2G04790.5 64.935 77 25 1 15 89 36 112 1.54e-31 110
Msa0744450 AT2G04790.6 64.935 77 25 1 15 89 36 112 1.54e-31 110
Msa0744450 AT2G04790.16 64.935 77 25 1 15 89 17 93 2.30e-31 109
Msa0744450 AT2G04790.8 72.727 44 12 0 15 58 36 79 3.13e-18 75.1
Msa0744450 AT2G04790.11 72.727 44 12 0 15 58 36 79 3.13e-18 75.1
Msa0744450 AT2G04790.7 72.727 44 12 0 15 58 36 79 3.13e-18 75.1

Find 66 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACTCCCTTAATATT+TGG 0.106470 5_1:+65261204 Msa0744450:CDS
ACAAAGAGTTATTATGTATT+TGG 0.125917 5_1:-65262412 None:intergenic
ATCACTTTCCTCGATTTATT+TGG 0.194419 5_1:-65262324 None:intergenic
GCTGCAAATCCCAAATATTA+AGG 0.224867 5_1:-65261214 None:intergenic
AGAAAATGAGAGATGGAATT+TGG 0.232207 5_1:+65262125 Msa0744450:three_prime_UTR
TGCTTACTCCCTTAATATTT+GGG 0.251158 5_1:+65261205 Msa0744450:CDS
TTATTGTTATGAGGTTATTC+TGG 0.280458 5_1:+65262235 Msa0744450:intron
ATTCTGCATCTGAACTAATA+TGG 0.297613 5_1:-65262587 None:intergenic
TATATATCTTCAGGATCTTT+TGG 0.303960 5_1:-65261443 None:intergenic
ATGTGGCAGCAATGCCTCTA+AGG 0.323320 5_1:+65261147 Msa0744450:CDS
GTTTCTCAAACAGTTCAATA+TGG 0.354692 5_1:-65262084 None:intergenic
CCTCGATTTATTTGGCTTTG+AGG 0.364586 5_1:-65262316 None:intergenic
TTGGGATTTGCAGCATTTCA+TGG 0.365079 5_1:+65261223 Msa0744450:CDS
TATGACATGTTATTGTTATG+AGG 0.373101 5_1:+65262226 Msa0744450:intron
AATTTCTTCTCTTATATAAG+AGG 0.389578 5_1:-65262557 None:intergenic
GGTCCCTTTGAAGCCCTTAG+AGG 0.394810 5_1:-65261161 None:intergenic
AACACTCCAGTTCCTTGATT+AGG 0.408937 5_1:-65262667 None:intergenic
TAAATCGAGGAAAGTGATCT+TGG 0.409500 5_1:+65262329 Msa0744450:three_prime_UTR
TTCCCTTACAAAAGTAGGAT+TGG 0.418880 5_1:+65261037 Msa0744450:five_prime_UTR
TTAGTTTCCCTTACAAAAGT+AGG 0.421319 5_1:+65261032 Msa0744450:five_prime_UTR
ACATGTCCTAATCAAGGAAC+TGG 0.425053 5_1:+65262661 Msa0744450:three_prime_UTR
CAAACCTTCCTCACCTTCAA+AGG 0.430343 5_1:+65261253 Msa0744450:CDS
TGTAGCAAACACTTAACATA+TGG 0.431558 5_1:+65262448 Msa0744450:three_prime_UTR
CTGCAAATCCCAAATATTAA+GGG 0.434798 5_1:-65261213 None:intergenic
AGTTATTATGTATTTGGAAT+GGG 0.438875 5_1:-65262406 None:intergenic
TCTCTTGAGTGACATAGAAA+TGG 0.440683 5_1:+65261076 Msa0744450:exon
TACATAGTATTTCATCCATA+TGG 0.446699 5_1:+65262632 Msa0744450:three_prime_UTR
ACCAACCAGCATTTGCTTCG+CGG 0.449071 5_1:-65261646 None:intergenic
AATAGGATTGAAACCTTTGA+AGG 0.455552 5_1:-65261266 None:intergenic
AGGACATGTTTATCACCATA+TGG 0.457084 5_1:-65262647 None:intergenic
TCAGATGCAGAATCTAAATC+TGG 0.470856 5_1:+65262597 Msa0744450:three_prime_UTR
AATGCCTCTAAGGGCTTCAA+AGG 0.472734 5_1:+65261157 Msa0744450:CDS
GAGTTATTATGTATTTGGAA+TGG 0.473480 5_1:-65262407 None:intergenic
AGTGCCGCATATATATCTTC+AGG 0.473960 5_1:-65261452 None:intergenic
TGGGAAACAGATTTGAGAAT+CGG 0.477510 5_1:+65261721 Msa0744450:CDS
AGAAGAAGATGCTGTGGAAA+TGG 0.484961 5_1:+65261678 Msa0744450:CDS
CGAAGCAAATGCTGGTTGGT+TGG 0.522860 5_1:+65261649 Msa0744450:CDS
GGTTTGGTCAGACAACTCAT+TGG 0.526406 5_1:+65261948 Msa0744450:intron
TGATAAACATGTCCTAATCA+AGG 0.529038 5_1:+65262655 Msa0744450:three_prime_UTR
GAAACCTTTGAAGGTGAGGA+AGG 0.532186 5_1:-65261257 None:intergenic
AGGCAGAGAGGAAGTGTATG+TGG 0.544412 5_1:+65261130 Msa0744450:CDS
TGAATTACCTCTAGCTACCC+TGG 0.544685 5_1:-65262001 None:intergenic
TTATCTGGTAGAGCTGTGCC+AGG 0.545939 5_1:+65261482 Msa0744450:CDS
TCAAAGACAAGAATGGTAAG+AGG 0.550312 5_1:+65261110 Msa0744450:CDS
GATTGCCGCGAAGCAAATGC+TGG 0.556329 5_1:+65261641 Msa0744450:CDS
ACTTGTATCAAAGACAAGAA+TGG 0.568325 5_1:+65261103 Msa0744450:CDS
TGTGGCAGCAATGCCTCTAA+GGG 0.570128 5_1:+65261148 Msa0744450:CDS
CTCAAAGAGAAAATGAGAGA+TGG 0.572299 5_1:+65262118 Msa0744450:three_prime_UTR
GATTGTCGCGATTATACCAA+TGG 0.578050 5_1:+65261751 Msa0744450:CDS
ATGCCTCTAAGGGCTTCAAA+GGG 0.584284 5_1:+65261158 Msa0744450:CDS
GATTGAAACCTTTGAAGGTG+AGG 0.593749 5_1:-65261261 None:intergenic
GCTGAAACGTTTGAGAAACC+AGG 0.597971 5_1:+65261983 Msa0744450:CDS
GCAGCAGACATAAGCAATTG+TGG 0.599579 5_1:-65261185 None:intergenic
TCTCAGGAGCTGTTCTTGTG+AGG 0.603725 5_1:+65261608 Msa0744450:intron
GAAATCATAGCATGATCTAG+AGG 0.605723 5_1:-65262060 None:intergenic
GAGGAAAGTGATCTTGGACA+TGG 0.610289 5_1:+65262335 Msa0744450:three_prime_UTR
ATTGAACTGTTTGAGAAACA+TGG 0.613758 5_1:+65262088 Msa0744450:three_prime_UTR
GCCGCGAAGCAAATGCTGGT+TGG 0.618375 5_1:+65261645 Msa0744450:CDS
CTGTTTGAGAAACATGGCAT+AGG 0.625516 5_1:+65262094 Msa0744450:three_prime_UTR
AAGAATGGTAAGAGGCAGAG+AGG 0.650232 5_1:+65261118 Msa0744450:CDS
CTGAAACGTTTGAGAAACCA+GGG 0.653890 5_1:+65261984 Msa0744450:CDS
CCTCAAAGCCAAATAAATCG+AGG 0.665555 5_1:+65262316 Msa0744450:three_prime_UTR
TGAGAAACCAGGGTAGCTAG+AGG 0.673317 5_1:+65261994 Msa0744450:CDS
AGATCCTGAAGATATATATG+CGG 0.681441 5_1:+65261448 Msa0744450:CDS
ATATGCAGAAGAAGATGCTG+TGG 0.682714 5_1:+65261672 Msa0744450:CDS
GCAGACATAAGCAATTGTGG+TGG 0.708742 5_1:-65261182 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCGTTAAAAAAAAGTTT+AGG + chr5_1:65261314-65261333 Msa0744450:intron 15.0%
!! ATAAAGAAAGTGAATATTTA+TGG - chr5_1:65261561-65261580 None:intergenic 15.0%
!!! TTTTCGTTAAAAAAAAGTTT+AGG + chr5_1:65261314-65261333 Msa0744450:intron 15.0%
!! ATAAAGAAAGTGAATATTTA+TGG - chr5_1:65261561-65261580 None:intergenic 15.0%
!!! TATTGCTTGTATTTATTTTC+AGG + chr5_1:65261400-65261419 Msa0744450:intron 20.0%
!! AAGTGAATTCAACAAAAAAT+GGG + chr5_1:65261702-65261721 Msa0744450:CDS 20.0%
!! TTTAAACAACTTATTACCAT+TGG - chr5_1:65261770-65261789 None:intergenic 20.0%
!! TGATAATATACAAACACTTA+TGG - chr5_1:65261837-65261856 None:intergenic 20.0%
!!! AGTTATTATGTATTTGGAAT+GGG - chr5_1:65262409-65262428 None:intergenic 20.0%
!! ACAAAGAGTTATTATGTATT+TGG - chr5_1:65262415-65262434 None:intergenic 20.0%
!! AATTTCTTCTCTTATATAAG+AGG - chr5_1:65262560-65262579 None:intergenic 20.0%
!!! TATTGCTTGTATTTATTTTC+AGG + chr5_1:65261400-65261419 Msa0744450:intron 20.0%
!! AAGTGAATTCAACAAAAAAT+GGG + chr5_1:65261702-65261721 Msa0744450:CDS 20.0%
!! TTTAAACAACTTATTACCAT+TGG - chr5_1:65261770-65261789 None:intergenic 20.0%
!! TGATAATATACAAACACTTA+TGG - chr5_1:65261837-65261856 None:intergenic 20.0%
!!! AGTTATTATGTATTTGGAAT+GGG - chr5_1:65262409-65262428 None:intergenic 20.0%
!! ACAAAGAGTTATTATGTATT+TGG - chr5_1:65262415-65262434 None:intergenic 20.0%
!! AATTTCTTCTCTTATATAAG+AGG - chr5_1:65262560-65262579 None:intergenic 20.0%
! ACGAAAAACCTATAAAATGT+AGG - chr5_1:65261301-65261320 None:intergenic 25.0%
!! TATATATCTTCAGGATCTTT+TGG - chr5_1:65261446-65261465 None:intergenic 25.0%
! GAGAATTATATGAACAGAAT+TGG - chr5_1:65261592-65261611 None:intergenic 25.0%
! ATTCTGTTCATATAATTCTC+AGG + chr5_1:65261592-65261611 Msa0744450:intron 25.0%
! CAAGTGAATTCAACAAAAAA+TGG + chr5_1:65261701-65261720 Msa0744450:CDS 25.0%
! TGCTACATAATTCTTTACAT+AGG - chr5_1:65261813-65261832 None:intergenic 25.0%
!! TTCAATCTGAATTGAACTTT+TGG + chr5_1:65261915-65261934 Msa0744450:intron 25.0%
!! TGAACTTTTGGTCAATTTAT+AGG + chr5_1:65261927-65261946 Msa0744450:intron 25.0%
!! TTTTGGTCAATTTATAGGTT+TGG + chr5_1:65261932-65261951 Msa0744450:intron 25.0%
!! ACATGTTGACATATAGTTTT+TGG - chr5_1:65262163-65262182 None:intergenic 25.0%
! CAACATGTAATTAACTTACT+AGG + chr5_1:65262175-65262194 Msa0744450:intron 25.0%
! TTACTAGGAGACTAAAATAA+AGG + chr5_1:65262190-65262209 Msa0744450:intron 25.0%
! TATGACATGTTATTGTTATG+AGG + chr5_1:65262226-65262245 Msa0744450:intron 25.0%
! TTATTGTTATGAGGTTATTC+TGG + chr5_1:65262235-65262254 Msa0744450:intron 25.0%
! GAGTTATTATGTATTTGGAA+TGG - chr5_1:65262410-65262429 None:intergenic 25.0%
! TACATAGTATTTCATCCATA+TGG + chr5_1:65262632-65262651 Msa0744450:three_prime_UTR 25.0%
! ACGAAAAACCTATAAAATGT+AGG - chr5_1:65261301-65261320 None:intergenic 25.0%
!! TATATATCTTCAGGATCTTT+TGG - chr5_1:65261446-65261465 None:intergenic 25.0%
! GAGAATTATATGAACAGAAT+TGG - chr5_1:65261592-65261611 None:intergenic 25.0%
! ATTCTGTTCATATAATTCTC+AGG + chr5_1:65261592-65261611 Msa0744450:intron 25.0%
! CAAGTGAATTCAACAAAAAA+TGG + chr5_1:65261701-65261720 Msa0744450:CDS 25.0%
! TGCTACATAATTCTTTACAT+AGG - chr5_1:65261813-65261832 None:intergenic 25.0%
!! TTCAATCTGAATTGAACTTT+TGG + chr5_1:65261915-65261934 Msa0744450:intron 25.0%
!! TGAACTTTTGGTCAATTTAT+AGG + chr5_1:65261927-65261946 Msa0744450:intron 25.0%
!! TTTTGGTCAATTTATAGGTT+TGG + chr5_1:65261932-65261951 Msa0744450:intron 25.0%
!! ACATGTTGACATATAGTTTT+TGG - chr5_1:65262163-65262182 None:intergenic 25.0%
! CAACATGTAATTAACTTACT+AGG + chr5_1:65262175-65262194 Msa0744450:intron 25.0%
! TTACTAGGAGACTAAAATAA+AGG + chr5_1:65262190-65262209 Msa0744450:intron 25.0%
! TATGACATGTTATTGTTATG+AGG + chr5_1:65262226-65262245 Msa0744450:intron 25.0%
! TTATTGTTATGAGGTTATTC+TGG + chr5_1:65262235-65262254 Msa0744450:intron 25.0%
! GAGTTATTATGTATTTGGAA+TGG - chr5_1:65262410-65262429 None:intergenic 25.0%
! TACATAGTATTTCATCCATA+TGG + chr5_1:65262632-65262651 Msa0744450:three_prime_UTR 25.0%
TTAGTTTCCCTTACAAAAGT+AGG + chr5_1:65261032-65261051 Msa0744450:five_prime_UTR 30.0%
!! ATCCAATCCTACTTTTGTAA+GGG - chr5_1:65261042-65261061 None:intergenic 30.0%
!! TATCCAATCCTACTTTTGTA+AGG - chr5_1:65261043-65261062 None:intergenic 30.0%
ACTTGTATCAAAGACAAGAA+TGG + chr5_1:65261103-65261122 Msa0744450:CDS 30.0%
TGCTTACTCCCTTAATATTT+GGG + chr5_1:65261205-65261224 Msa0744450:CDS 30.0%
CTGCAAATCCCAAATATTAA+GGG - chr5_1:65261216-65261235 None:intergenic 30.0%
AATAGGATTGAAACCTTTGA+AGG - chr5_1:65261269-65261288 None:intergenic 30.0%
! ATTCCTCTCCTACATTTTAT+AGG + chr5_1:65261290-65261309 Msa0744450:intron 30.0%
AAACCTATAAAATGTAGGAG+AGG - chr5_1:65261296-65261315 None:intergenic 30.0%
AGATCCTGAAGATATATATG+CGG + chr5_1:65261448-65261467 Msa0744450:CDS 30.0%
! TAACTTGTGAACTTTCTGAT+TGG + chr5_1:65261525-65261544 Msa0744450:intron 30.0%
GTTTCTCAAACAGTTCAATA+TGG - chr5_1:65262087-65262106 None:intergenic 30.0%
ATTGAACTGTTTGAGAAACA+TGG + chr5_1:65262088-65262107 Msa0744450:three_prime_UTR 30.0%
AGAAAATGAGAGATGGAATT+TGG + chr5_1:65262125-65262144 Msa0744450:three_prime_UTR 30.0%
!!! GTTGACATATAGTTTTTGGT+TGG - chr5_1:65262159-65262178 None:intergenic 30.0%
AGGAGACTAAAATAAAGGAA+TGG + chr5_1:65262195-65262214 Msa0744450:intron 30.0%
ATCACTTTCCTCGATTTATT+TGG - chr5_1:65262327-65262346 None:intergenic 30.0%
TGTAGCAAACACTTAACATA+TGG + chr5_1:65262448-65262467 Msa0744450:three_prime_UTR 30.0%
ATTCTGCATCTGAACTAATA+TGG - chr5_1:65262590-65262609 None:intergenic 30.0%
TGATAAACATGTCCTAATCA+AGG + chr5_1:65262655-65262674 Msa0744450:three_prime_UTR 30.0%
TTAGTTTCCCTTACAAAAGT+AGG + chr5_1:65261032-65261051 Msa0744450:five_prime_UTR 30.0%
!! ATCCAATCCTACTTTTGTAA+GGG - chr5_1:65261042-65261061 None:intergenic 30.0%
!! TATCCAATCCTACTTTTGTA+AGG - chr5_1:65261043-65261062 None:intergenic 30.0%
ACTTGTATCAAAGACAAGAA+TGG + chr5_1:65261103-65261122 Msa0744450:CDS 30.0%
TGCTTACTCCCTTAATATTT+GGG + chr5_1:65261205-65261224 Msa0744450:CDS 30.0%
CTGCAAATCCCAAATATTAA+GGG - chr5_1:65261216-65261235 None:intergenic 30.0%
AATAGGATTGAAACCTTTGA+AGG - chr5_1:65261269-65261288 None:intergenic 30.0%
! ATTCCTCTCCTACATTTTAT+AGG + chr5_1:65261290-65261309 Msa0744450:intron 30.0%
AAACCTATAAAATGTAGGAG+AGG - chr5_1:65261296-65261315 None:intergenic 30.0%
AGATCCTGAAGATATATATG+CGG + chr5_1:65261448-65261467 Msa0744450:CDS 30.0%
! TAACTTGTGAACTTTCTGAT+TGG + chr5_1:65261525-65261544 Msa0744450:intron 30.0%
GTTTCTCAAACAGTTCAATA+TGG - chr5_1:65262087-65262106 None:intergenic 30.0%
ATTGAACTGTTTGAGAAACA+TGG + chr5_1:65262088-65262107 Msa0744450:three_prime_UTR 30.0%
AGAAAATGAGAGATGGAATT+TGG + chr5_1:65262125-65262144 Msa0744450:three_prime_UTR 30.0%
!!! GTTGACATATAGTTTTTGGT+TGG - chr5_1:65262159-65262178 None:intergenic 30.0%
AGGAGACTAAAATAAAGGAA+TGG + chr5_1:65262195-65262214 Msa0744450:intron 30.0%
ATCACTTTCCTCGATTTATT+TGG - chr5_1:65262327-65262346 None:intergenic 30.0%
TGTAGCAAACACTTAACATA+TGG + chr5_1:65262448-65262467 Msa0744450:three_prime_UTR 30.0%
ATTCTGCATCTGAACTAATA+TGG - chr5_1:65262590-65262609 None:intergenic 30.0%
TGATAAACATGTCCTAATCA+AGG + chr5_1:65262655-65262674 Msa0744450:three_prime_UTR 30.0%
TTCCCTTACAAAAGTAGGAT+TGG + chr5_1:65261037-65261056 Msa0744450:five_prime_UTR 35.0%
TCTCTTGAGTGACATAGAAA+TGG + chr5_1:65261076-65261095 Msa0744450:exon 35.0%
TCAAAGACAAGAATGGTAAG+AGG + chr5_1:65261110-65261129 Msa0744450:CDS 35.0%
CTGCTTACTCCCTTAATATT+TGG + chr5_1:65261204-65261223 Msa0744450:CDS 35.0%
GCTGCAAATCCCAAATATTA+AGG - chr5_1:65261217-65261236 None:intergenic 35.0%
AATGTAGGAGAGGAATGAAT+AGG - chr5_1:65261286-65261305 None:intergenic 35.0%
AATTAAGTCCAAATCTGACC+TGG - chr5_1:65261503-65261522 None:intergenic 35.0%
TGGGAAACAGATTTGAGAAT+CGG + chr5_1:65261721-65261740 Msa0744450:CDS 35.0%
GAAATCATAGCATGATCTAG+AGG - chr5_1:65262063-65262082 None:intergenic 35.0%
! CATCTCTCATTTTCTCTTTG+AGG - chr5_1:65262120-65262139 None:intergenic 35.0%
CTCAAAGAGAAAATGAGAGA+TGG + chr5_1:65262118-65262137 Msa0744450:three_prime_UTR 35.0%
TAAATCGAGGAAAGTGATCT+TGG + chr5_1:65262329-65262348 Msa0744450:three_prime_UTR 35.0%
TCAGATGCAGAATCTAAATC+TGG + chr5_1:65262597-65262616 Msa0744450:three_prime_UTR 35.0%
AGGACATGTTTATCACCATA+TGG - chr5_1:65262650-65262669 None:intergenic 35.0%
TTCCCTTACAAAAGTAGGAT+TGG + chr5_1:65261037-65261056 Msa0744450:five_prime_UTR 35.0%
TCTCTTGAGTGACATAGAAA+TGG + chr5_1:65261076-65261095 Msa0744450:exon 35.0%
TCAAAGACAAGAATGGTAAG+AGG + chr5_1:65261110-65261129 Msa0744450:CDS 35.0%
CTGCTTACTCCCTTAATATT+TGG + chr5_1:65261204-65261223 Msa0744450:CDS 35.0%
GCTGCAAATCCCAAATATTA+AGG - chr5_1:65261217-65261236 None:intergenic 35.0%
AATGTAGGAGAGGAATGAAT+AGG - chr5_1:65261286-65261305 None:intergenic 35.0%
AATTAAGTCCAAATCTGACC+TGG - chr5_1:65261503-65261522 None:intergenic 35.0%
TGGGAAACAGATTTGAGAAT+CGG + chr5_1:65261721-65261740 Msa0744450:CDS 35.0%
GAAATCATAGCATGATCTAG+AGG - chr5_1:65262063-65262082 None:intergenic 35.0%
! CATCTCTCATTTTCTCTTTG+AGG - chr5_1:65262120-65262139 None:intergenic 35.0%
CTCAAAGAGAAAATGAGAGA+TGG + chr5_1:65262118-65262137 Msa0744450:three_prime_UTR 35.0%
TAAATCGAGGAAAGTGATCT+TGG + chr5_1:65262329-65262348 Msa0744450:three_prime_UTR 35.0%
TCAGATGCAGAATCTAAATC+TGG + chr5_1:65262597-65262616 Msa0744450:three_prime_UTR 35.0%
AGGACATGTTTATCACCATA+TGG - chr5_1:65262650-65262669 None:intergenic 35.0%
TTGGGATTTGCAGCATTTCA+TGG + chr5_1:65261223-65261242 Msa0744450:CDS 40.0%
! GATTGAAACCTTTGAAGGTG+AGG - chr5_1:65261264-65261283 None:intergenic 40.0%
AGTGCCGCATATATATCTTC+AGG - chr5_1:65261455-65261474 None:intergenic 40.0%
ATATGCAGAAGAAGATGCTG+TGG + chr5_1:65261672-65261691 Msa0744450:CDS 40.0%
AGAAGAAGATGCTGTGGAAA+TGG + chr5_1:65261678-65261697 Msa0744450:CDS 40.0%
GATTGTCGCGATTATACCAA+TGG + chr5_1:65261751-65261770 Msa0744450:CDS 40.0%
CTGAAACGTTTGAGAAACCA+GGG + chr5_1:65261984-65262003 Msa0744450:CDS 40.0%
CTGTTTGAGAAACATGGCAT+AGG + chr5_1:65262094-65262113 Msa0744450:three_prime_UTR 40.0%
!! CCTCGATTTATTTGGCTTTG+AGG - chr5_1:65262319-65262338 None:intergenic 40.0%
CCTCAAAGCCAAATAAATCG+AGG + chr5_1:65262316-65262335 Msa0744450:three_prime_UTR 40.0%
ACATGTCCTAATCAAGGAAC+TGG + chr5_1:65262661-65262680 Msa0744450:three_prime_UTR 40.0%
AACACTCCAGTTCCTTGATT+AGG - chr5_1:65262670-65262689 None:intergenic 40.0%
TTGGGATTTGCAGCATTTCA+TGG + chr5_1:65261223-65261242 Msa0744450:CDS 40.0%
! GATTGAAACCTTTGAAGGTG+AGG - chr5_1:65261264-65261283 None:intergenic 40.0%
AGTGCCGCATATATATCTTC+AGG - chr5_1:65261455-65261474 None:intergenic 40.0%
ATATGCAGAAGAAGATGCTG+TGG + chr5_1:65261672-65261691 Msa0744450:CDS 40.0%
AGAAGAAGATGCTGTGGAAA+TGG + chr5_1:65261678-65261697 Msa0744450:CDS 40.0%
GATTGTCGCGATTATACCAA+TGG + chr5_1:65261751-65261770 Msa0744450:CDS 40.0%
CTGAAACGTTTGAGAAACCA+GGG + chr5_1:65261984-65262003 Msa0744450:CDS 40.0%
CTGTTTGAGAAACATGGCAT+AGG + chr5_1:65262094-65262113 Msa0744450:three_prime_UTR 40.0%
!! CCTCGATTTATTTGGCTTTG+AGG - chr5_1:65262319-65262338 None:intergenic 40.0%
CCTCAAAGCCAAATAAATCG+AGG + chr5_1:65262316-65262335 Msa0744450:three_prime_UTR 40.0%
ACATGTCCTAATCAAGGAAC+TGG + chr5_1:65262661-65262680 Msa0744450:three_prime_UTR 40.0%
AACACTCCAGTTCCTTGATT+AGG - chr5_1:65262670-65262689 None:intergenic 40.0%
AAGAATGGTAAGAGGCAGAG+AGG + chr5_1:65261118-65261137 Msa0744450:CDS 45.0%
! AATGCCTCTAAGGGCTTCAA+AGG + chr5_1:65261157-65261176 Msa0744450:CDS 45.0%
! ATGCCTCTAAGGGCTTCAAA+GGG + chr5_1:65261158-65261177 Msa0744450:CDS 45.0%
GCAGACATAAGCAATTGTGG+TGG - chr5_1:65261185-65261204 None:intergenic 45.0%
GCAGCAGACATAAGCAATTG+TGG - chr5_1:65261188-65261207 None:intergenic 45.0%
CAAACCTTCCTCACCTTCAA+AGG + chr5_1:65261253-65261272 Msa0744450:CDS 45.0%
! GAAACCTTTGAAGGTGAGGA+AGG - chr5_1:65261260-65261279 None:intergenic 45.0%
TTAGACGCTCTCTAAGCTTG+AGG - chr5_1:65261372-65261391 None:intergenic 45.0%
! GGTTTGGTCAGACAACTCAT+TGG + chr5_1:65261948-65261967 Msa0744450:intron 45.0%
GCTGAAACGTTTGAGAAACC+AGG + chr5_1:65261983-65262002 Msa0744450:CDS 45.0%
TGAATTACCTCTAGCTACCC+TGG - chr5_1:65262004-65262023 None:intergenic 45.0%
GAGGAAAGTGATCTTGGACA+TGG + chr5_1:65262335-65262354 Msa0744450:three_prime_UTR 45.0%
AAGAATGGTAAGAGGCAGAG+AGG + chr5_1:65261118-65261137 Msa0744450:CDS 45.0%
! AATGCCTCTAAGGGCTTCAA+AGG + chr5_1:65261157-65261176 Msa0744450:CDS 45.0%
! ATGCCTCTAAGGGCTTCAAA+GGG + chr5_1:65261158-65261177 Msa0744450:CDS 45.0%
GCAGACATAAGCAATTGTGG+TGG - chr5_1:65261185-65261204 None:intergenic 45.0%
GCAGCAGACATAAGCAATTG+TGG - chr5_1:65261188-65261207 None:intergenic 45.0%
CAAACCTTCCTCACCTTCAA+AGG + chr5_1:65261253-65261272 Msa0744450:CDS 45.0%
! GAAACCTTTGAAGGTGAGGA+AGG - chr5_1:65261260-65261279 None:intergenic 45.0%
TTAGACGCTCTCTAAGCTTG+AGG - chr5_1:65261372-65261391 None:intergenic 45.0%
! GGTTTGGTCAGACAACTCAT+TGG + chr5_1:65261948-65261967 Msa0744450:intron 45.0%
GCTGAAACGTTTGAGAAACC+AGG + chr5_1:65261983-65262002 Msa0744450:CDS 45.0%
TGAATTACCTCTAGCTACCC+TGG - chr5_1:65262004-65262023 None:intergenic 45.0%
GAGGAAAGTGATCTTGGACA+TGG + chr5_1:65262335-65262354 Msa0744450:three_prime_UTR 45.0%
! AGGCAGAGAGGAAGTGTATG+TGG + chr5_1:65261130-65261149 Msa0744450:CDS 50.0%
ATGTGGCAGCAATGCCTCTA+AGG + chr5_1:65261147-65261166 Msa0744450:CDS 50.0%
TGTGGCAGCAATGCCTCTAA+GGG + chr5_1:65261148-65261167 Msa0744450:CDS 50.0%
GTCCGAATGTTCACCATCGA+CGG + chr5_1:65261345-65261364 Msa0744450:intron 50.0%
GTCCGTCGATGGTGAACATT+CGG - chr5_1:65261350-65261369 None:intergenic 50.0%
!! GCGGCACTAGCAGTTTTATC+TGG + chr5_1:65261467-65261486 Msa0744450:CDS 50.0%
TTATCTGGTAGAGCTGTGCC+AGG + chr5_1:65261482-65261501 Msa0744450:CDS 50.0%
TCTCAGGAGCTGTTCTTGTG+AGG + chr5_1:65261608-65261627 Msa0744450:intron 50.0%
ACCAACCAGCATTTGCTTCG+CGG - chr5_1:65261649-65261668 None:intergenic 50.0%
! CGAAGCAAATGCTGGTTGGT+TGG + chr5_1:65261649-65261668 Msa0744450:CDS 50.0%
TGAGAAACCAGGGTAGCTAG+AGG + chr5_1:65261994-65262013 Msa0744450:CDS 50.0%
! AGGCAGAGAGGAAGTGTATG+TGG + chr5_1:65261130-65261149 Msa0744450:CDS 50.0%
ATGTGGCAGCAATGCCTCTA+AGG + chr5_1:65261147-65261166 Msa0744450:CDS 50.0%
TGTGGCAGCAATGCCTCTAA+GGG + chr5_1:65261148-65261167 Msa0744450:CDS 50.0%
GTCCGAATGTTCACCATCGA+CGG + chr5_1:65261345-65261364 Msa0744450:intron 50.0%
GTCCGTCGATGGTGAACATT+CGG - chr5_1:65261350-65261369 None:intergenic 50.0%
!! GCGGCACTAGCAGTTTTATC+TGG + chr5_1:65261467-65261486 Msa0744450:CDS 50.0%
TTATCTGGTAGAGCTGTGCC+AGG + chr5_1:65261482-65261501 Msa0744450:CDS 50.0%
TCTCAGGAGCTGTTCTTGTG+AGG + chr5_1:65261608-65261627 Msa0744450:intron 50.0%
ACCAACCAGCATTTGCTTCG+CGG - chr5_1:65261649-65261668 None:intergenic 50.0%
! CGAAGCAAATGCTGGTTGGT+TGG + chr5_1:65261649-65261668 Msa0744450:CDS 50.0%
TGAGAAACCAGGGTAGCTAG+AGG + chr5_1:65261994-65262013 Msa0744450:CDS 50.0%
!! GGTCCCTTTGAAGCCCTTAG+AGG - chr5_1:65261164-65261183 None:intergenic 55.0%
CTAAGCTTGAGGTCCGTCGA+TGG - chr5_1:65261361-65261380 None:intergenic 55.0%
GAGCTGTGCCAGGTCAGATT+TGG + chr5_1:65261492-65261511 Msa0744450:intron 55.0%
GATTGCCGCGAAGCAAATGC+TGG + chr5_1:65261641-65261660 Msa0744450:CDS 55.0%
!! GGTCCCTTTGAAGCCCTTAG+AGG - chr5_1:65261164-65261183 None:intergenic 55.0%
CTAAGCTTGAGGTCCGTCGA+TGG - chr5_1:65261361-65261380 None:intergenic 55.0%
GAGCTGTGCCAGGTCAGATT+TGG + chr5_1:65261492-65261511 Msa0744450:intron 55.0%
GATTGCCGCGAAGCAAATGC+TGG + chr5_1:65261641-65261660 Msa0744450:CDS 55.0%
GCCGCGAAGCAAATGCTGGT+TGG + chr5_1:65261645-65261664 Msa0744450:CDS 60.0%
GCCGCGAAGCAAATGCTGGT+TGG + chr5_1:65261645-65261664 Msa0744450:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 65261031 65262708 65261031 ID=Msa0744450;Name=Msa0744450
chr5_1 mRNA 65261031 65262708 65261031 ID=Msa0744450-mRNA-1;Parent=Msa0744450;Name=Msa0744450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|0.6|0.5|6|619|161
chr5_1 exon 65261031 65261274 65261031 ID=Msa0744450-mRNA-1:exon:19347;Parent=Msa0744450-mRNA-1
chr5_1 exon 65261422 65261503 65261422 ID=Msa0744450-mRNA-1:exon:19348;Parent=Msa0744450-mRNA-1
chr5_1 exon 65261614 65261772 65261614 ID=Msa0744450-mRNA-1:exon:19349;Parent=Msa0744450-mRNA-1
chr5_1 exon 65261949 65262015 65261949 ID=Msa0744450-mRNA-1:exon:19350;Parent=Msa0744450-mRNA-1
chr5_1 exon 65262036 65262184 65262036 ID=Msa0744450-mRNA-1:exon:19351;Parent=Msa0744450-mRNA-1
chr5_1 exon 65262241 65262708 65262241 ID=Msa0744450-mRNA-1:exon:19352;Parent=Msa0744450-mRNA-1
chr5_1 five_prime_UTR 65261031 65261094 65261031 ID=Msa0744450-mRNA-1:five_prime_utr;Parent=Msa0744450-mRNA-1
chr5_1 CDS 65261095 65261274 65261095 ID=Msa0744450-mRNA-1:cds;Parent=Msa0744450-mRNA-1
chr5_1 CDS 65261422 65261503 65261422 ID=Msa0744450-mRNA-1:cds;Parent=Msa0744450-mRNA-1
chr5_1 CDS 65261614 65261772 65261614 ID=Msa0744450-mRNA-1:cds;Parent=Msa0744450-mRNA-1
chr5_1 CDS 65261949 65262013 65261949 ID=Msa0744450-mRNA-1:cds;Parent=Msa0744450-mRNA-1
chr5_1 three_prime_UTR 65262014 65262015 65262014 ID=Msa0744450-mRNA-1:three_prime_utr;Parent=Msa0744450-mRNA-1
chr5_1 three_prime_UTR 65262036 65262184 65262036 ID=Msa0744450-mRNA-1:three_prime_utr;Parent=Msa0744450-mRNA-1
chr5_1 three_prime_UTR 65262241 65262708 65262241 ID=Msa0744450-mRNA-1:three_prime_utr;Parent=Msa0744450-mRNA-1
Gene Sequence

>Msa0744450

ATGGAATCACTTGTATCAAAGACAAGAATGGTAAGAGGCAGAGAGGAAGTGTATGTGGCAGCAATGCCTCTAAGGGCTTCAAAGGGACCACCACAATTGCTTATGTCTGCTGCTTACTCCCTTAATATTTGGGATTTGCAGCATTTCATGGTCATCATCAAACCTTCCTCACCTTCAAAGGTTCTAGTTTTTGATTTTCAACCAAAAGATCCTGAAGATATATATGCGGCACTAGCAGTTTTATCTGGTAGAGCTGTGCCAGGAGCTGTTCTTGTGAGGAAGTTAAAAAGATTGCCGCGAAGCAAATGCTGGTTGGTTGGATATGCAGAAGAAGATGCTGTGGAAATGGCAAGTGAATTCAACAAAAAATGGGAAACAGATTTGAGAATCGGTGTTAATGATTGTCGCGATTATACCAATGGTTTGGTCAGACAACTCATTGGTGAAGAAGATGTGCTGAAACGTTTGAGAAACCAGGGTAGCTAG

Protein sequence

>Msa0744450

MESLVSKTRMVRGREEVYVAAMPLRASKGPPQLLMSAAYSLNIWDLQHFMVIIKPSSPSKVLVFDFQPKDPEDIYAALAVLSGRAVPGAVLVRKLKRLPRSKCWLVGYAEEDAVEMASEFNKKWETDLRIGVNDCRDYTNGLVRQLIGEEDVLKRLRNQGS*