AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1016670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1016670 MtrunA17_Chr7g0232051 91.905 210 17 0 1 210 1 210 6.15e-144 401
Msa1016670 MtrunA17_Chr4g0018621 31.132 212 115 5 46 229 66 274 1.64e-24 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1016670 AT4G25170.1 27.232 224 119 5 47 226 118 341 1.31e-21 92.0
Msa1016670 AT4G25170.2 25.523 239 119 5 47 226 118 356 1.40e-19 86.3
Msa1016670 AT5G61490.1 30.412 194 113 6 47 226 70 255 2.98e-17 78.6

Find 40 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAATTAAAACAGGTATTT+TGG 0.160458 7_1:+33868078 Msa1016670:three_prime_UTR
CTTCTGGAGTTGCCTGATTC+AGG 0.234726 7_1:+33867361 Msa1016670:CDS
TAGCCATGATTACAATTAAA+AGG 0.291956 7_1:-33867939 None:intergenic
TGTGTTGCAGCAAAGGCTTC+TGG 0.299635 7_1:+33867345 Msa1016670:CDS
TTAATACATATACAAATAAA+TGG 0.310791 7_1:-33868047 None:intergenic
TTATCTTCTTGTTGCTGTAA+TGG 0.335551 7_1:+33865972 Msa1016670:CDS
ATCATCTGATGAAGCCATTT+GGG 0.369589 7_1:+33867306 Msa1016670:CDS
TGCAATCTCAAGGATATAAT+AGG 0.380708 7_1:+33866821 Msa1016670:CDS
TATCATCTGATGAAGCCATT+TGG 0.380798 7_1:+33867305 Msa1016670:CDS
GCAAGCTGATCCTGCTGTTA+AGG 0.385703 7_1:+33866867 Msa1016670:CDS
AATTAAAAGTAAATTAAAAC+AGG 0.396226 7_1:+33868070 Msa1016670:three_prime_UTR
ACTCTTATGATTATGATTCA+AGG 0.400681 7_1:+33866794 Msa1016670:CDS
GTAAAATACAGACCTGAATC+AGG 0.413501 7_1:-33867373 None:intergenic
AACAATCATCATTCATCAAT+GGG 0.416947 7_1:+33865891 Msa1016670:exon
TCAGCATAGAAATCTTAAAC+TGG 0.423620 7_1:+33867758 Msa1016670:CDS
AAACAATCATCATTCATCAA+TGG 0.432468 7_1:+33865890 Msa1016670:exon
TCTCTTTGCTCTGAACCCTT+AGG 0.432849 7_1:-33867733 None:intergenic
TGACACTGTTCCATCTCAAA+TGG 0.457616 7_1:+33866052 Msa1016670:CDS
AGCTAAAGGTAAAAGACCTA+AGG 0.478956 7_1:+33867717 Msa1016670:intron
ATTACAGCAACAAGAAGATA+AGG 0.483282 7_1:-33865970 None:intergenic
CCTGGGATTGAAAACGCAAC+AGG 0.490744 7_1:+33867859 Msa1016670:CDS
TATCATGAAAGGAAAAGTCT+TGG 0.499321 7_1:+33867789 Msa1016670:CDS
AATGATTTATTCAAGTACCC+TGG 0.511965 7_1:+33867841 Msa1016670:CDS
TAAGAAATGTGTTGCAGCAA+AGG 0.518969 7_1:+33867338 Msa1016670:CDS
TCCTCAACTTCCATTTGAGA+TGG 0.521148 7_1:-33866062 None:intergenic
TTATTGGCGTTACTCAATTG+AGG 0.521377 7_1:-33865945 None:intergenic
GATGGAACAGTGTCAAATAC+AGG 0.521605 7_1:-33866044 None:intergenic
TCTTATGACAGCATCCCAAA+TGG 0.524517 7_1:-33867320 None:intergenic
ATGATTTATTCAAGTACCCT+GGG 0.528335 7_1:+33867842 Msa1016670:CDS
AGAAAACAAGAGATAACATC+AGG 0.536095 7_1:+33866005 Msa1016670:CDS
TGGATATTTCATATCATGAA+AGG 0.540393 7_1:+33867778 Msa1016670:CDS
AAGAGAGAAACCTTAACAGC+AGG 0.544699 7_1:-33866877 None:intergenic
TCAAGGATTGTGCAATCTCA+AGG 0.559981 7_1:+33866811 Msa1016670:CDS
CATCATTCATCAATGGGAGG+TGG 0.560723 7_1:+33865897 Msa1016670:exon
TACAATTAAAAGGATAACAA+TGG 0.569576 7_1:-33867929 None:intergenic
GCTAAAGGTAAAAGACCTAA+GGG 0.576611 7_1:+33867718 Msa1016670:intron
TCCATCTCAAATGGAAGTTG+AGG 0.577676 7_1:+33866061 Msa1016670:CDS
GATCTGTTGATCTATGATTG+TGG 0.615202 7_1:-33866767 None:intergenic
AAACAAGAGATAACATCAGG+TGG 0.661795 7_1:+33866008 Msa1016670:CDS
AATCATCATTCATCAATGGG+AGG 0.669157 7_1:+33865894 Msa1016670:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAGAAATATAATTAATTT+AGG + chr7_1:33866273-33866292 Msa1016670:intron 10.0%
!! TTAATACATATACAAATAAA+TGG - chr7_1:33868050-33868069 None:intergenic 10.0%
!! AATTAAAAGTAAATTAAAAC+AGG + chr7_1:33868070-33868089 Msa1016670:three_prime_UTR 10.0%
!! CTAAGAAATATAATTAATTT+AGG + chr7_1:33866273-33866292 Msa1016670:intron 10.0%
!! TTAATACATATACAAATAAA+TGG - chr7_1:33868050-33868069 None:intergenic 10.0%
!! AATTAAAAGTAAATTAAAAC+AGG + chr7_1:33868070-33868089 Msa1016670:three_prime_UTR 10.0%
!! TTCAAAATACAATCAATAAT+TGG + chr7_1:33866942-33866961 Msa1016670:intron 15.0%
!!! TGATTTTATCAAATTATTAG+CGG - chr7_1:33867533-33867552 None:intergenic 15.0%
!! TCGTAAAATGAAATATATAA+TGG + chr7_1:33867638-33867657 Msa1016670:intron 15.0%
!! TTCAAAATACAATCAATAAT+TGG + chr7_1:33866942-33866961 Msa1016670:intron 15.0%
!!! TGATTTTATCAAATTATTAG+CGG - chr7_1:33867533-33867552 None:intergenic 15.0%
!! TCGTAAAATGAAATATATAA+TGG + chr7_1:33867638-33867657 Msa1016670:intron 15.0%
!!! TTAGATGAAATTGTTTGTTT+TGG + chr7_1:33866202-33866221 Msa1016670:intron 20.0%
!!! GAAAAATAAAAGGAACTTTT+GGG + chr7_1:33866347-33866366 Msa1016670:intron 20.0%
!!! TCAATGTAGTTTTTTTTTTG+AGG + chr7_1:33866497-33866516 Msa1016670:intron 20.0%
!!! CAATGTAGTTTTTTTTTTGA+GGG + chr7_1:33866498-33866517 Msa1016670:intron 20.0%
!!! ACTCAATATAAAAGATTTTG+AGG - chr7_1:33866571-33866590 None:intergenic 20.0%
!!! TTGATTGTATTTTGAAACTA+TGG - chr7_1:33866938-33866957 None:intergenic 20.0%
!!! TTCTTAGTGAATATTTCTTT+TGG - chr7_1:33867452-33867471 None:intergenic 20.0%
!! AATTTAGTGTAATTATGTGT+TGG + chr7_1:33867556-33867575 Msa1016670:intron 20.0%
!! TACAATTAAAAGGATAACAA+TGG - chr7_1:33867932-33867951 None:intergenic 20.0%
!!! TATCCTTTTAATTGTAATCA+TGG + chr7_1:33867936-33867955 Msa1016670:CDS 20.0%
!!! GTAAATTAAAACAGGTATTT+TGG + chr7_1:33868078-33868097 Msa1016670:three_prime_UTR 20.0%
!!! TTAGATGAAATTGTTTGTTT+TGG + chr7_1:33866202-33866221 Msa1016670:intron 20.0%
!!! GAAAAATAAAAGGAACTTTT+GGG + chr7_1:33866347-33866366 Msa1016670:intron 20.0%
!!! TCAATGTAGTTTTTTTTTTG+AGG + chr7_1:33866497-33866516 Msa1016670:intron 20.0%
!!! CAATGTAGTTTTTTTTTTGA+GGG + chr7_1:33866498-33866517 Msa1016670:intron 20.0%
!!! ACTCAATATAAAAGATTTTG+AGG - chr7_1:33866571-33866590 None:intergenic 20.0%
!!! TTGATTGTATTTTGAAACTA+TGG - chr7_1:33866938-33866957 None:intergenic 20.0%
!!! TTCTTAGTGAATATTTCTTT+TGG - chr7_1:33867452-33867471 None:intergenic 20.0%
!! AATTTAGTGTAATTATGTGT+TGG + chr7_1:33867556-33867575 Msa1016670:intron 20.0%
!! TACAATTAAAAGGATAACAA+TGG - chr7_1:33867932-33867951 None:intergenic 20.0%
!!! TATCCTTTTAATTGTAATCA+TGG + chr7_1:33867936-33867955 Msa1016670:CDS 20.0%
!!! GTAAATTAAAACAGGTATTT+TGG + chr7_1:33868078-33868097 Msa1016670:three_prime_UTR 20.0%
! AAACAATCATCATTCATCAA+TGG + chr7_1:33865890-33865909 Msa1016670:exon 25.0%
! AACAATCATCATTCATCAAT+GGG + chr7_1:33865891-33865910 Msa1016670:exon 25.0%
!!! ACAAGAAGATAAGGTTTTAT+TGG - chr7_1:33865964-33865983 None:intergenic 25.0%
! AAGAGTAAGAAGTAACATAA+GGG - chr7_1:33866144-33866163 None:intergenic 25.0%
! AAAGAGTAAGAAGTAACATA+AGG - chr7_1:33866145-33866164 None:intergenic 25.0%
!!! ACTCTTTTGAGATAAATTAG+AGG + chr7_1:33866158-33866177 Msa1016670:intron 25.0%
!! CGAAAAATAAAAGGAACTTT+TGG + chr7_1:33866346-33866365 Msa1016670:intron 25.0%
!!! GTAATTTTTTCGTGACAATA+TGG + chr7_1:33866416-33866435 Msa1016670:intron 25.0%
!! TCTTTTATATTGAGTCCTAA+TGG + chr7_1:33866576-33866595 Msa1016670:intron 25.0%
!! GGAAATAAAGCTGAATATTT+TGG - chr7_1:33866628-33866647 None:intergenic 25.0%
!! ACTTTTTACAAGTTCTACAA+AGG - chr7_1:33866649-33866668 None:intergenic 25.0%
!! GAACTTGTAAAAAGTTTTTC+AGG + chr7_1:33866654-33866673 Msa1016670:intron 25.0%
! ACTCTTATGATTATGATTCA+AGG + chr7_1:33866794-33866813 Msa1016670:CDS 25.0%
!!! TATTTTACTAACTTGTGGAA+TGG + chr7_1:33867388-33867407 Msa1016670:intron 25.0%
!! TTAGTGAATATTTCTTTTGG+TGG - chr7_1:33867449-33867468 None:intergenic 25.0%
! AAATATTCACTAAGAAGAGA+AGG + chr7_1:33867456-33867475 Msa1016670:intron 25.0%
! AGAAGGAATGATATAAAACA+CGG + chr7_1:33867473-33867492 Msa1016670:intron 25.0%
!! ATATTTCATTTTACGAAGCA+TGG - chr7_1:33867634-33867653 None:intergenic 25.0%
! TGGATATTTCATATCATGAA+AGG + chr7_1:33867778-33867797 Msa1016670:CDS 25.0%
! TAGCCATGATTACAATTAAA+AGG - chr7_1:33867942-33867961 None:intergenic 25.0%
! AAACAATCATCATTCATCAA+TGG + chr7_1:33865890-33865909 Msa1016670:exon 25.0%
! AACAATCATCATTCATCAAT+GGG + chr7_1:33865891-33865910 Msa1016670:exon 25.0%
!!! ACAAGAAGATAAGGTTTTAT+TGG - chr7_1:33865964-33865983 None:intergenic 25.0%
! AAGAGTAAGAAGTAACATAA+GGG - chr7_1:33866144-33866163 None:intergenic 25.0%
! AAAGAGTAAGAAGTAACATA+AGG - chr7_1:33866145-33866164 None:intergenic 25.0%
!!! ACTCTTTTGAGATAAATTAG+AGG + chr7_1:33866158-33866177 Msa1016670:intron 25.0%
!! CGAAAAATAAAAGGAACTTT+TGG + chr7_1:33866346-33866365 Msa1016670:intron 25.0%
!!! GTAATTTTTTCGTGACAATA+TGG + chr7_1:33866416-33866435 Msa1016670:intron 25.0%
!! TCTTTTATATTGAGTCCTAA+TGG + chr7_1:33866576-33866595 Msa1016670:intron 25.0%
!! GGAAATAAAGCTGAATATTT+TGG - chr7_1:33866628-33866647 None:intergenic 25.0%
!! ACTTTTTACAAGTTCTACAA+AGG - chr7_1:33866649-33866668 None:intergenic 25.0%
!! GAACTTGTAAAAAGTTTTTC+AGG + chr7_1:33866654-33866673 Msa1016670:intron 25.0%
! ACTCTTATGATTATGATTCA+AGG + chr7_1:33866794-33866813 Msa1016670:CDS 25.0%
!!! TATTTTACTAACTTGTGGAA+TGG + chr7_1:33867388-33867407 Msa1016670:intron 25.0%
!! TTAGTGAATATTTCTTTTGG+TGG - chr7_1:33867449-33867468 None:intergenic 25.0%
! AAATATTCACTAAGAAGAGA+AGG + chr7_1:33867456-33867475 Msa1016670:intron 25.0%
! AGAAGGAATGATATAAAACA+CGG + chr7_1:33867473-33867492 Msa1016670:intron 25.0%
!! ATATTTCATTTTACGAAGCA+TGG - chr7_1:33867634-33867653 None:intergenic 25.0%
! TGGATATTTCATATCATGAA+AGG + chr7_1:33867778-33867797 Msa1016670:CDS 25.0%
! TAGCCATGATTACAATTAAA+AGG - chr7_1:33867942-33867961 None:intergenic 25.0%
ATTACAGCAACAAGAAGATA+AGG - chr7_1:33865973-33865992 None:intergenic 30.0%
TTATCTTCTTGTTGCTGTAA+TGG + chr7_1:33865972-33865991 Msa1016670:CDS 30.0%
AGAAAACAAGAGATAACATC+AGG + chr7_1:33866005-33866024 Msa1016670:CDS 30.0%
AGATAAATTAGAGGTCTTCT+TGG + chr7_1:33866167-33866186 Msa1016670:intron 30.0%
GATAAATTAGAGGTCTTCTT+GGG + chr7_1:33866168-33866187 Msa1016670:intron 30.0%
! ATTTTTCGCAGCAACAAATA+TGG - chr7_1:33866334-33866353 None:intergenic 30.0%
TTGTTGCTGCGAAAAATAAA+AGG + chr7_1:33866337-33866356 Msa1016670:intron 30.0%
TGTCAATGTAGTTGAAATTG+CGG + chr7_1:33866525-33866544 Msa1016670:intron 30.0%
ATGTTATGAGTACAACCATT+AGG - chr7_1:33866594-33866613 None:intergenic 30.0%
!!! AAAGTTTTTCAGGAATCATG+TGG + chr7_1:33866664-33866683 Msa1016670:intron 30.0%
TCTGACACAACAAATTGAAA+AGG - chr7_1:33866728-33866747 None:intergenic 30.0%
TGCAATCTCAAGGATATAAT+AGG + chr7_1:33866821-33866840 Msa1016670:CDS 30.0%
TTGAGTTATATGTCGTACAT+TGG + chr7_1:33866976-33866995 Msa1016670:intron 30.0%
! GTCTGTATTTTACTAACTTG+TGG + chr7_1:33867383-33867402 Msa1016670:intron 30.0%
TATCAAATTATTAGCGGTGT+TGG - chr7_1:33867527-33867546 None:intergenic 30.0%
! GTGTAATTATGTGTTGGTAT+CGG + chr7_1:33867562-33867581 Msa1016670:intron 30.0%
TGGAAGAAAACAATGTTAGA+TGG - chr7_1:33867694-33867713 None:intergenic 30.0%
TCAGCATAGAAATCTTAAAC+TGG + chr7_1:33867758-33867777 Msa1016670:CDS 30.0%
TATCATGAAAGGAAAAGTCT+TGG + chr7_1:33867789-33867808 Msa1016670:CDS 30.0%
AATGATTTATTCAAGTACCC+TGG + chr7_1:33867841-33867860 Msa1016670:CDS 30.0%
ATGATTTATTCAAGTACCCT+GGG + chr7_1:33867842-33867861 Msa1016670:CDS 30.0%
CACAGTTAGATGAAAAAGTT+AGG + chr7_1:33867890-33867909 Msa1016670:CDS 30.0%
!!! GGTATTTTGGTTAGTATTTG+CGG + chr7_1:33868091-33868110 Msa1016670:three_prime_UTR 30.0%
ATTACAGCAACAAGAAGATA+AGG - chr7_1:33865973-33865992 None:intergenic 30.0%
TTATCTTCTTGTTGCTGTAA+TGG + chr7_1:33865972-33865991 Msa1016670:CDS 30.0%
AGAAAACAAGAGATAACATC+AGG + chr7_1:33866005-33866024 Msa1016670:CDS 30.0%
AGATAAATTAGAGGTCTTCT+TGG + chr7_1:33866167-33866186 Msa1016670:intron 30.0%
GATAAATTAGAGGTCTTCTT+GGG + chr7_1:33866168-33866187 Msa1016670:intron 30.0%
! ATTTTTCGCAGCAACAAATA+TGG - chr7_1:33866334-33866353 None:intergenic 30.0%
TTGTTGCTGCGAAAAATAAA+AGG + chr7_1:33866337-33866356 Msa1016670:intron 30.0%
TGTCAATGTAGTTGAAATTG+CGG + chr7_1:33866525-33866544 Msa1016670:intron 30.0%
ATGTTATGAGTACAACCATT+AGG - chr7_1:33866594-33866613 None:intergenic 30.0%
!!! AAAGTTTTTCAGGAATCATG+TGG + chr7_1:33866664-33866683 Msa1016670:intron 30.0%
TCTGACACAACAAATTGAAA+AGG - chr7_1:33866728-33866747 None:intergenic 30.0%
TGCAATCTCAAGGATATAAT+AGG + chr7_1:33866821-33866840 Msa1016670:CDS 30.0%
TTGAGTTATATGTCGTACAT+TGG + chr7_1:33866976-33866995 Msa1016670:intron 30.0%
! GTCTGTATTTTACTAACTTG+TGG + chr7_1:33867383-33867402 Msa1016670:intron 30.0%
TATCAAATTATTAGCGGTGT+TGG - chr7_1:33867527-33867546 None:intergenic 30.0%
! GTGTAATTATGTGTTGGTAT+CGG + chr7_1:33867562-33867581 Msa1016670:intron 30.0%
TGGAAGAAAACAATGTTAGA+TGG - chr7_1:33867694-33867713 None:intergenic 30.0%
TCAGCATAGAAATCTTAAAC+TGG + chr7_1:33867758-33867777 Msa1016670:CDS 30.0%
TATCATGAAAGGAAAAGTCT+TGG + chr7_1:33867789-33867808 Msa1016670:CDS 30.0%
AATGATTTATTCAAGTACCC+TGG + chr7_1:33867841-33867860 Msa1016670:CDS 30.0%
ATGATTTATTCAAGTACCCT+GGG + chr7_1:33867842-33867861 Msa1016670:CDS 30.0%
CACAGTTAGATGAAAAAGTT+AGG + chr7_1:33867890-33867909 Msa1016670:CDS 30.0%
AATCATCATTCATCAATGGG+AGG + chr7_1:33865894-33865913 Msa1016670:exon 35.0%
TTATTGGCGTTACTCAATTG+AGG - chr7_1:33865948-33865967 None:intergenic 35.0%
AAACAAGAGATAACATCAGG+TGG + chr7_1:33866008-33866027 Msa1016670:CDS 35.0%
GCATTTCGCAGCAATATAAA+GGG - chr7_1:33866465-33866484 None:intergenic 35.0%
CTTTATATTGCTGCGAAATG+CGG + chr7_1:33866464-33866483 Msa1016670:intron 35.0%
GATCTGTTGATCTATGATTG+TGG - chr7_1:33866770-33866789 None:intergenic 35.0%
TCGTACATTGGATAAGAAAG+TGG + chr7_1:33866988-33867007 Msa1016670:intron 35.0%
CGTACATTGGATAAGAAAGT+GGG + chr7_1:33866989-33867008 Msa1016670:intron 35.0%
! AACTCATTGCGTTAAGGTTT+TGG + chr7_1:33867044-33867063 Msa1016670:intron 35.0%
! TGTGTTGATGAAATGTGTCT+CGG + chr7_1:33867252-33867271 Msa1016670:intron 35.0%
TATCATCTGATGAAGCCATT+TGG + chr7_1:33867305-33867324 Msa1016670:CDS 35.0%
ATCATCTGATGAAGCCATTT+GGG + chr7_1:33867306-33867325 Msa1016670:CDS 35.0%
TAAGAAATGTGTTGCAGCAA+AGG + chr7_1:33867338-33867357 Msa1016670:CDS 35.0%
GTAAAATACAGACCTGAATC+AGG - chr7_1:33867376-33867395 None:intergenic 35.0%
! TTAGGTCTTTTACCTTTAGC+TGG - chr7_1:33867718-33867737 None:intergenic 35.0%
AGCTAAAGGTAAAAGACCTA+AGG + chr7_1:33867717-33867736 Msa1016670:intron 35.0%
GCTAAAGGTAAAAGACCTAA+GGG + chr7_1:33867718-33867737 Msa1016670:intron 35.0%
AATCATCATTCATCAATGGG+AGG + chr7_1:33865894-33865913 Msa1016670:exon 35.0%
TTATTGGCGTTACTCAATTG+AGG - chr7_1:33865948-33865967 None:intergenic 35.0%
AAACAAGAGATAACATCAGG+TGG + chr7_1:33866008-33866027 Msa1016670:CDS 35.0%
GCATTTCGCAGCAATATAAA+GGG - chr7_1:33866465-33866484 None:intergenic 35.0%
CTTTATATTGCTGCGAAATG+CGG + chr7_1:33866464-33866483 Msa1016670:intron 35.0%
GATCTGTTGATCTATGATTG+TGG - chr7_1:33866770-33866789 None:intergenic 35.0%
TCGTACATTGGATAAGAAAG+TGG + chr7_1:33866988-33867007 Msa1016670:intron 35.0%
CGTACATTGGATAAGAAAGT+GGG + chr7_1:33866989-33867008 Msa1016670:intron 35.0%
! AACTCATTGCGTTAAGGTTT+TGG + chr7_1:33867044-33867063 Msa1016670:intron 35.0%
! TGTGTTGATGAAATGTGTCT+CGG + chr7_1:33867252-33867271 Msa1016670:intron 35.0%
TATCATCTGATGAAGCCATT+TGG + chr7_1:33867305-33867324 Msa1016670:CDS 35.0%
ATCATCTGATGAAGCCATTT+GGG + chr7_1:33867306-33867325 Msa1016670:CDS 35.0%
TAAGAAATGTGTTGCAGCAA+AGG + chr7_1:33867338-33867357 Msa1016670:CDS 35.0%
GTAAAATACAGACCTGAATC+AGG - chr7_1:33867376-33867395 None:intergenic 35.0%
! TTAGGTCTTTTACCTTTAGC+TGG - chr7_1:33867718-33867737 None:intergenic 35.0%
AGCTAAAGGTAAAAGACCTA+AGG + chr7_1:33867717-33867736 Msa1016670:intron 35.0%
GCTAAAGGTAAAAGACCTAA+GGG + chr7_1:33867718-33867737 Msa1016670:intron 35.0%
GATGGAACAGTGTCAAATAC+AGG - chr7_1:33866047-33866066 None:intergenic 40.0%
TGACACTGTTCCATCTCAAA+TGG + chr7_1:33866052-33866071 Msa1016670:CDS 40.0%
TCCATCTCAAATGGAAGTTG+AGG + chr7_1:33866061-33866080 Msa1016670:CDS 40.0%
TCCTCAACTTCCATTTGAGA+TGG - chr7_1:33866065-33866084 None:intergenic 40.0%
CGCATTTCGCAGCAATATAA+AGG - chr7_1:33866466-33866485 None:intergenic 40.0%
TTGCGGTTATGTTGTCATTG+CGG + chr7_1:33866542-33866561 Msa1016670:intron 40.0%
TCAAGGATTGTGCAATCTCA+AGG + chr7_1:33866811-33866830 Msa1016670:CDS 40.0%
AAGAGAGAAACCTTAACAGC+AGG - chr7_1:33866880-33866899 None:intergenic 40.0%
CACATGAACTCATTGCGTTA+AGG + chr7_1:33867038-33867057 Msa1016670:intron 40.0%
TTAATCCTTAAAGCCGTGTC+GGG - chr7_1:33867153-33867172 None:intergenic 40.0%
CTTAATCCTTAAAGCCGTGT+CGG - chr7_1:33867154-33867173 None:intergenic 40.0%
TCTTATGACAGCATCCCAAA+TGG - chr7_1:33867323-33867342 None:intergenic 40.0%
! TTATGTGTTGGTATCGGACA+CGG + chr7_1:33867568-33867587 Msa1016670:intron 40.0%
! GATTAAGCGTGTCTTGTTGT+TGG - chr7_1:33867601-33867620 None:intergenic 40.0%
! GTTTTCTTCCATCCAGCTAA+AGG + chr7_1:33867703-33867722 Msa1016670:intron 40.0%
! GTCTTTTACCTTTAGCTGGA+TGG - chr7_1:33867714-33867733 None:intergenic 40.0%
GATGGAACAGTGTCAAATAC+AGG - chr7_1:33866047-33866066 None:intergenic 40.0%
TGACACTGTTCCATCTCAAA+TGG + chr7_1:33866052-33866071 Msa1016670:CDS 40.0%
TCCATCTCAAATGGAAGTTG+AGG + chr7_1:33866061-33866080 Msa1016670:CDS 40.0%
TCCTCAACTTCCATTTGAGA+TGG - chr7_1:33866065-33866084 None:intergenic 40.0%
CGCATTTCGCAGCAATATAA+AGG - chr7_1:33866466-33866485 None:intergenic 40.0%
TTGCGGTTATGTTGTCATTG+CGG + chr7_1:33866542-33866561 Msa1016670:intron 40.0%
TCAAGGATTGTGCAATCTCA+AGG + chr7_1:33866811-33866830 Msa1016670:CDS 40.0%
AAGAGAGAAACCTTAACAGC+AGG - chr7_1:33866880-33866899 None:intergenic 40.0%
CACATGAACTCATTGCGTTA+AGG + chr7_1:33867038-33867057 Msa1016670:intron 40.0%
TTAATCCTTAAAGCCGTGTC+GGG - chr7_1:33867153-33867172 None:intergenic 40.0%
CTTAATCCTTAAAGCCGTGT+CGG - chr7_1:33867154-33867173 None:intergenic 40.0%
TCTTATGACAGCATCCCAAA+TGG - chr7_1:33867323-33867342 None:intergenic 40.0%
! TTATGTGTTGGTATCGGACA+CGG + chr7_1:33867568-33867587 Msa1016670:intron 40.0%
! GATTAAGCGTGTCTTGTTGT+TGG - chr7_1:33867601-33867620 None:intergenic 40.0%
! GTTTTCTTCCATCCAGCTAA+AGG + chr7_1:33867703-33867722 Msa1016670:intron 40.0%
! GTCTTTTACCTTTAGCTGGA+TGG - chr7_1:33867714-33867733 None:intergenic 40.0%
CATCATTCATCAATGGGAGG+TGG + chr7_1:33865897-33865916 Msa1016670:exon 45.0%
TAGTGTCTCTCTCACTTGTG+TGG + chr7_1:33867076-33867095 Msa1016670:intron 45.0%
AACAAGACACGCTTAATCCG+AGG + chr7_1:33867603-33867622 Msa1016670:intron 45.0%
! TCTCTTTGCTCTGAACCCTT+AGG - chr7_1:33867736-33867755 None:intergenic 45.0%
! CTGTTGCGTTTTCAATCCCA+GGG - chr7_1:33867861-33867880 None:intergenic 45.0%
CATCATTCATCAATGGGAGG+TGG + chr7_1:33865897-33865916 Msa1016670:exon 45.0%
TAGTGTCTCTCTCACTTGTG+TGG + chr7_1:33867076-33867095 Msa1016670:intron 45.0%
AACAAGACACGCTTAATCCG+AGG + chr7_1:33867603-33867622 Msa1016670:intron 45.0%
! TCTCTTTGCTCTGAACCCTT+AGG - chr7_1:33867736-33867755 None:intergenic 45.0%
! CTGTTGCGTTTTCAATCCCA+GGG - chr7_1:33867861-33867880 None:intergenic 45.0%
GCAAGCTGATCCTGCTGTTA+AGG + chr7_1:33866867-33866886 Msa1016670:CDS 50.0%
TCTGCCAGTCTGCTTTGATG+CGG + chr7_1:33867103-33867122 Msa1016670:intron 50.0%
TGTGTTGCAGCAAAGGCTTC+TGG + chr7_1:33867345-33867364 Msa1016670:CDS 50.0%
!! CTTCTGGAGTTGCCTGATTC+AGG + chr7_1:33867361-33867380 Msa1016670:CDS 50.0%
TACGAAGCATGGACACTCCT+CGG - chr7_1:33867623-33867642 None:intergenic 50.0%
! CCTGTTGCGTTTTCAATCCC+AGG - chr7_1:33867862-33867881 None:intergenic 50.0%
CCTGGGATTGAAAACGCAAC+AGG + chr7_1:33867859-33867878 Msa1016670:CDS 50.0%
GCAAGCTGATCCTGCTGTTA+AGG + chr7_1:33866867-33866886 Msa1016670:CDS 50.0%
TCTGCCAGTCTGCTTTGATG+CGG + chr7_1:33867103-33867122 Msa1016670:intron 50.0%
TGTGTTGCAGCAAAGGCTTC+TGG + chr7_1:33867345-33867364 Msa1016670:CDS 50.0%
!! CTTCTGGAGTTGCCTGATTC+AGG + chr7_1:33867361-33867380 Msa1016670:CDS 50.0%
TACGAAGCATGGACACTCCT+CGG - chr7_1:33867623-33867642 None:intergenic 50.0%
! CCTGTTGCGTTTTCAATCCC+AGG - chr7_1:33867862-33867881 None:intergenic 50.0%
CCTGGGATTGAAAACGCAAC+AGG + chr7_1:33867859-33867878 Msa1016670:CDS 50.0%
CTGCCAGTCTGCTTTGATGC+GGG + chr7_1:33867104-33867123 Msa1016670:intron 55.0%
AAAGCCGTGTCGGGTCATGA+GGG - chr7_1:33867144-33867163 None:intergenic 55.0%
TAAAGCCGTGTCGGGTCATG+AGG - chr7_1:33867145-33867164 None:intergenic 55.0%
CATGACCCGACACGGCTTTA+AGG + chr7_1:33867145-33867164 Msa1016670:intron 55.0%
CTGCCAGTCTGCTTTGATGC+GGG + chr7_1:33867104-33867123 Msa1016670:intron 55.0%
AAAGCCGTGTCGGGTCATGA+GGG - chr7_1:33867144-33867163 None:intergenic 55.0%
TAAAGCCGTGTCGGGTCATG+AGG - chr7_1:33867145-33867164 None:intergenic 55.0%
CATGACCCGACACGGCTTTA+AGG + chr7_1:33867145-33867164 Msa1016670:intron 55.0%
CCACCCGCATCAAAGCAGAC+TGG - chr7_1:33867110-33867129 None:intergenic 60.0%
CCAGTCTGCTTTGATGCGGG+TGG + chr7_1:33867107-33867126 Msa1016670:intron 60.0%
GCTTTGATGCGGGTGGTCCT+TGG + chr7_1:33867114-33867133 Msa1016670:intron 60.0%
ACTCCCCTCATGACCCGACA+CGG + chr7_1:33867137-33867156 Msa1016670:intron 60.0%
AAGCCGTGTCGGGTCATGAG+GGG - chr7_1:33867143-33867162 None:intergenic 60.0%
CCACCCGCATCAAAGCAGAC+TGG - chr7_1:33867110-33867129 None:intergenic 60.0%
CCAGTCTGCTTTGATGCGGG+TGG + chr7_1:33867107-33867126 Msa1016670:intron 60.0%
GCTTTGATGCGGGTGGTCCT+TGG + chr7_1:33867114-33867133 Msa1016670:intron 60.0%
ACTCCCCTCATGACCCGACA+CGG + chr7_1:33867137-33867156 Msa1016670:intron 60.0%
AAGCCGTGTCGGGTCATGAG+GGG - chr7_1:33867143-33867162 None:intergenic 60.0%
CGGGTCATGAGGGGAGTCCA+AGG - chr7_1:33867134-33867153 None:intergenic 65.0%
CGGGTCATGAGGGGAGTCCA+AGG - chr7_1:33867134-33867153 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 33865883 33868111 33865883 ID=Msa1016670;Name=Msa1016670
chr7_1 mRNA 33865883 33868111 33865883 ID=Msa1016670-mRNA-1;Parent=Msa1016670;Name=Msa1016670-mRNA-1;_AED=0.23;_eAED=0.23;_QI=26|1|1|1|1|1|4|127|232
chr7_1 exon 33865883 33866105 33865883 ID=Msa1016670-mRNA-1:exon:6554;Parent=Msa1016670-mRNA-1
chr7_1 exon 33866747 33866888 33866747 ID=Msa1016670-mRNA-1:exon:6555;Parent=Msa1016670-mRNA-1
chr7_1 exon 33867289 33867382 33867289 ID=Msa1016670-mRNA-1:exon:6556;Parent=Msa1016670-mRNA-1
chr7_1 exon 33867719 33868111 33867719 ID=Msa1016670-mRNA-1:exon:6557;Parent=Msa1016670-mRNA-1
chr7_1 five_prime_UTR 33865883 33865908 33865883 ID=Msa1016670-mRNA-1:five_prime_utr;Parent=Msa1016670-mRNA-1
chr7_1 CDS 33865909 33866105 33865909 ID=Msa1016670-mRNA-1:cds;Parent=Msa1016670-mRNA-1
chr7_1 CDS 33866747 33866888 33866747 ID=Msa1016670-mRNA-1:cds;Parent=Msa1016670-mRNA-1
chr7_1 CDS 33867289 33867382 33867289 ID=Msa1016670-mRNA-1:cds;Parent=Msa1016670-mRNA-1
chr7_1 CDS 33867719 33867984 33867719 ID=Msa1016670-mRNA-1:cds;Parent=Msa1016670-mRNA-1
chr7_1 three_prime_UTR 33867985 33868111 33867985 ID=Msa1016670-mRNA-1:three_prime_utr;Parent=Msa1016670-mRNA-1
Gene Sequence

>Msa1016670

ATGGGAGGTGGAACTATGCATATTGATCATCTTGTACCTCAATTGAGTAACGCCAATAAAACCTTATCTTCTTGTTGCTGTAATGGTCAGTTCTGCAGAAAACAAGAGATAACATCAGGTGGTAATCTCTATACTCCTGTATTTGACACTGTTCCATCTCAAATGGAAGTTGAGGATGCAATTTCAGCTCTTCAAGAATTTATGAAAGCAGTATCAACCACAATCATAGATCAACAGATCGCAGACTCTTATGATTATGATTCAAGGATTGTGCAATCTCAAGGATATAATAGGCTTTACAATGCTCTTCAGTTGCTGCAAGCTGATCCTGCTGTTAAGAGTTTAGTGATTTCACTATCATCTGATGAAGCCATTTGGGATGCTGTCATAAGAAATGTGTTGCAGCAAAGGCTTCTGGAGTTGCCTGATTCAGCTAAAGGTAAAAGACCTAAGGGTTCAGAGCAAAGAGAGATCAGCATAGAAATCTTAAACTGGATATTTCATATCATGAAAGGAAAAGTCTTGGAACTGATACAAAGTTTTCAGTCACTTATGAATGATTTATTCAAGTACCCTGGGATTGAAAACGCAACAGGAGATACATCACAGTTAGATGAAAAAGTTAGGTCATCTACACTTCTTTCCATTGTTATCCTTTTAATTGTAATCATGGCTAGATATCAAAGTCGTCAAGTCTAA

Protein sequence

>Msa1016670

MGGGTMHIDHLVPQLSNANKTLSSCCCNGQFCRKQEITSGGNLYTPVFDTVPSQMEVEDAISALQEFMKAVSTTIIDQQIADSYDYDSRIVQSQGYNRLYNALQLLQADPAVKSLVISLSSDEAIWDAVIRNVLQQRLLELPDSAKGKRPKGSEQREISIEILNWIFHIMKGKVLELIQSFQSLMNDLFKYPGIENATGDTSQLDEKVRSSTLLSIVILLIVIMARYQSRQV*