AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0582730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582730 MtrunA17_CPg0492851 71.385 325 34 5 65 330 1 325 2.87e-151 427
Msa0582730 MtrunA17_Chr4g0015731 71.385 325 34 5 65 330 1 325 2.87e-151 427
Msa0582730 MtrunA17_Chr4g0016821 71.385 325 34 5 65 330 1 325 2.87e-151 427
Msa0582730 MtrunA17_Chr4g0016991 93.846 65 4 0 266 330 1 65 4.93e-36 124
Msa0582730 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 1.09e-34 124
Msa0582730 MtrunA17_CPg0492871 96.721 61 2 0 1 61 86 146 4.52e-34 124
Msa0582730 MtrunA17_Chr4g0015721 96.721 61 2 0 1 61 86 146 4.52e-34 124
Msa0582730 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 5.68e-34 124
Msa0582730 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 4.20e-32 114
Msa0582730 MtrunA17_Chr4g0016981 89.286 28 3 0 108 135 42 69 4.49e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582730 ATCG00540.1 65.312 320 52 5 70 330 1 320 9.12e-133 381
Msa0582730 ATCG00530.1 67.241 58 19 0 3 60 88 145 4.03e-18 82.4

Find 76 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 4_2:-1179158 Msa0582730:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 4_2:-1180567 Msa0582730:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 4_2:-1179173 Msa0582730:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 4_2:-1180566 Msa0582730:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 4_2:-1179587 Msa0582730:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 4_2:+1179250 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 4_2:+1180572 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 4_2:+1179847 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 4_2:-1179484 Msa0582730:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 4_2:+1179575 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 4_2:-1179238 Msa0582730:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 4_2:-1180534 Msa0582730:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 4_2:-1179383 Msa0582730:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 4_2:-1179483 Msa0582730:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 4_2:+1179485 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 4_2:-1179751 Msa0582730:intron
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 4_2:+1180644 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 4_2:-1179233 Msa0582730:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 4_2:+1179235 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 4_2:+1179766 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 4_2:-1180533 Msa0582730:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 4_2:+1179527 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 4_2:+1179932 None:intergenic
GATCATGAGCAATACGGAAA+TGG 0.442149 4_2:+1179974 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 4_2:+1180623 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 4_2:-1179586 Msa0582730:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 4_2:+1179443 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 4_2:-1180580 Msa0582730:CDS
ACCTCTGAAACAAGAAGTTC+TGG 0.468226 4_2:+1179294 None:intergenic
TACAGAAATGCAAAATCGTA+TGG 0.481344 4_2:+1180611 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 4_2:+1179799 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 4_2:+1180025 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 4_2:-1179360 Msa0582730:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 4_2:+1179798 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 4_2:+1179569 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 4_2:+1179933 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 4_2:+1179980 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 4_2:-1179190 Msa0582730:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 4_2:+1179968 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 4_2:+1179885 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 4_2:-1179490 Msa0582730:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 4_2:-1179231 Msa0582730:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 4_2:+1179442 None:intergenic
ACTATATTTCTTCCCAGGAA+CGG 0.533921 4_2:+1179574 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 4_2:-1179232 Msa0582730:CDS
CTAAGTGGTTATTCTATTAG+GGG 0.545375 4_2:-1180565 Msa0582730:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 4_2:+1179300 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 4_2:+1179539 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 4_2:-1179476 Msa0582730:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 4_2:+1180617 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 4_2:+1179520 None:intergenic
AAAATCCGAGAGAAGCTACC+GGG 0.554646 4_2:-1179890 Msa0582730:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 4_2:+1179979 None:intergenic
AGTGATTGATATTATACGCC+AGG 0.566254 4_2:-1179318 Msa0582730:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 4_2:+1179521 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 4_2:-1179248 Msa0582730:CDS
GGGGTCAGATTTATCCCGAC+GGG 0.575656 4_2:-1179457 Msa0582730:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 4_2:-1179478 Msa0582730:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 4_2:-1179347 Msa0582730:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 4_2:+1179544 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 4_2:+1179184 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 4_2:-1179891 Msa0582730:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 4_2:-1179230 Msa0582730:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 4_2:-1179491 Msa0582730:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 4_2:-1179494 Msa0582730:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 4_2:-1179244 Msa0582730:CDS
ATTAGCACATACAATCCGCC+CGG 0.633238 4_2:+1179872 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 4_2:-1179351 Msa0582730:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 4_2:+1179576 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 4_2:-1179482 Msa0582730:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 4_2:-1179477 Msa0582730:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 4_2:-1179247 Msa0582730:CDS
AGGGGTCAGATTTATCCCGA+CGG 0.672516 4_2:-1179458 Msa0582730:CDS
TAGATATTGAGGTCCACAAG+CGG 0.694168 4_2:-1179827 Msa0582730:intron
GTATCGGGAAGTACCGCTTG+TGG 0.704583 4_2:+1179814 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 4_2:-1179887 Msa0582730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + chr4_2:1179299-1179318 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr4_2:1179300-1179319 Msa0582730:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr4_2:1179435-1179454 Msa0582730:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr4_2:1179695-1179714 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr4_2:1180374-1180393 Msa0582730:intron 15.0%
!! AAAAAAGAAACAATTTGAAA+AGG - chr4_2:1180641-1180660 Msa0582730:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + chr4_2:1179299-1179318 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr4_2:1179300-1179319 Msa0582730:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr4_2:1179435-1179454 Msa0582730:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr4_2:1179695-1179714 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr4_2:1180374-1180393 Msa0582730:intron 15.0%
!! AAAAAAGAAACAATTTGAAA+AGG - chr4_2:1180641-1180660 Msa0582730:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr4_2:1179428-1179447 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr4_2:1179536-1179555 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr4_2:1179627-1179646 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr4_2:1179696-1179715 Msa0582730:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr4_2:1180109-1180128 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + chr4_2:1180156-1180175 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - chr4_2:1180154-1180173 Msa0582730:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr4_2:1180158-1180177 Msa0582730:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr4_2:1180263-1180282 Msa0582730:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr4_2:1179428-1179447 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr4_2:1179536-1179555 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr4_2:1179627-1179646 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr4_2:1179696-1179715 Msa0582730:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr4_2:1180109-1180128 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + chr4_2:1180156-1180175 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - chr4_2:1180154-1180173 Msa0582730:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr4_2:1180158-1180177 Msa0582730:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr4_2:1180263-1180282 Msa0582730:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr4_2:1179177-1179196 Msa0582730:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr4_2:1179188-1179207 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr4_2:1179190-1179209 Msa0582730:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr4_2:1179191-1179210 Msa0582730:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr4_2:1179223-1179242 Msa0582730:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr4_2:1179224-1179243 Msa0582730:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr4_2:1179387-1179406 Msa0582730:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr4_2:1179466-1179485 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr4_2:1179645-1179664 Msa0582730:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr4_2:1179650-1179669 Msa0582730:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr4_2:1179651-1179670 Msa0582730:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr4_2:1179691-1179710 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr4_2:1179708-1179727 Msa0582730:intron 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr4_2:1179738-1179757 Msa0582730:intron 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr4_2:1179745-1179764 Msa0582730:intron 25.0%
! TATATAGATCATGAGCAATA+CGG + chr4_2:1179792-1179811 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr4_2:1179994-1180013 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr4_2:1180016-1180035 Msa0582730:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr4_2:1180108-1180127 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr4_2:1180377-1180396 Msa0582730:intron 25.0%
!!! TTATTTTGGCACAAATCTTT+TGG - chr4_2:1180613-1180632 Msa0582730:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr4_2:1179177-1179196 Msa0582730:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr4_2:1179188-1179207 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr4_2:1179190-1179209 Msa0582730:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr4_2:1179191-1179210 Msa0582730:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr4_2:1179223-1179242 Msa0582730:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr4_2:1179224-1179243 Msa0582730:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr4_2:1179387-1179406 Msa0582730:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr4_2:1179466-1179485 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr4_2:1179645-1179664 Msa0582730:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr4_2:1179650-1179669 Msa0582730:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr4_2:1179651-1179670 Msa0582730:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr4_2:1179691-1179710 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr4_2:1179708-1179727 Msa0582730:intron 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr4_2:1179738-1179757 Msa0582730:intron 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr4_2:1179745-1179764 Msa0582730:intron 25.0%
! TATATAGATCATGAGCAATA+CGG + chr4_2:1179792-1179811 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr4_2:1179994-1180013 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr4_2:1180016-1180035 Msa0582730:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr4_2:1180108-1180127 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr4_2:1180377-1180396 Msa0582730:intron 25.0%
!!! TTATTTTGGCACAAATCTTT+TGG - chr4_2:1180613-1180632 Msa0582730:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + chr4_2:1179143-1179162 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr4_2:1179149-1179168 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr4_2:1179192-1179211 Msa0582730:CDS 30.0%
! TATCTAAAATGACTGGAAAG+TGG + chr4_2:1179421-1179440 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr4_2:1179488-1179507 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr4_2:1179614-1179633 Msa0582730:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr4_2:1179684-1179703 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr4_2:1179735-1179754 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr4_2:1179827-1179846 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr4_2:1179828-1179847 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr4_2:1179919-1179938 Msa0582730:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr4_2:1179962-1179981 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr4_2:1180006-1180025 Msa0582730:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr4_2:1180015-1180034 Msa0582730:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr4_2:1180017-1180036 Msa0582730:CDS 30.0%
!!! ATTTTACCAGGGTTTTGAAT+TGG - chr4_2:1180063-1180082 Msa0582730:intron 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr4_2:1180105-1180124 Msa0582730:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr4_2:1180191-1180210 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr4_2:1180266-1180285 Msa0582730:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr4_2:1180510-1180529 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr4_2:1180509-1180528 Msa0582730:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr4_2:1180510-1180529 Msa0582730:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr4_2:1180599-1180618 Msa0582730:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + chr4_2:1179143-1179162 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr4_2:1179149-1179168 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr4_2:1179192-1179211 Msa0582730:CDS 30.0%
! TATCTAAAATGACTGGAAAG+TGG + chr4_2:1179421-1179440 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr4_2:1179488-1179507 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr4_2:1179614-1179633 Msa0582730:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr4_2:1179684-1179703 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr4_2:1179735-1179754 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr4_2:1179827-1179846 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr4_2:1179828-1179847 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr4_2:1179919-1179938 Msa0582730:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr4_2:1179962-1179981 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr4_2:1180006-1180025 Msa0582730:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr4_2:1180015-1180034 Msa0582730:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr4_2:1180017-1180036 Msa0582730:CDS 30.0%
!!! ATTTTACCAGGGTTTTGAAT+TGG - chr4_2:1180063-1180082 Msa0582730:intron 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr4_2:1180105-1180124 Msa0582730:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr4_2:1180191-1180210 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr4_2:1180266-1180285 Msa0582730:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr4_2:1180510-1180529 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr4_2:1180509-1180528 Msa0582730:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr4_2:1180510-1180529 Msa0582730:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr4_2:1180599-1180618 Msa0582730:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - chr4_2:1179318-1179337 Msa0582730:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr4_2:1179323-1179342 Msa0582730:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr4_2:1179337-1179356 Msa0582730:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr4_2:1179357-1179376 Msa0582730:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr4_2:1179838-1179857 Msa0582730:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr4_2:1179839-1179858 Msa0582730:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr4_2:1179845-1179864 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr4_2:1179846-1179865 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr4_2:1179913-1179932 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr4_2:1179961-1179980 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr4_2:1180030-1180049 Msa0582730:CDS 35.0%
!!! GTGCTGTTCTTATTTTACCA+GGG - chr4_2:1180052-1180071 Msa0582730:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr4_2:1180186-1180205 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr4_2:1180216-1180235 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr4_2:1180267-1180286 Msa0582730:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr4_2:1180341-1180360 Msa0582730:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr4_2:1180397-1180416 Msa0582730:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr4_2:1180406-1180425 Msa0582730:intron 35.0%
AGTGATTGATATTATACGCC+AGG - chr4_2:1180439-1180458 Msa0582730:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - chr4_2:1179318-1179337 Msa0582730:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr4_2:1179323-1179342 Msa0582730:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr4_2:1179337-1179356 Msa0582730:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr4_2:1179357-1179376 Msa0582730:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr4_2:1179838-1179857 Msa0582730:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr4_2:1179839-1179858 Msa0582730:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr4_2:1179845-1179864 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr4_2:1179846-1179865 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr4_2:1179913-1179932 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr4_2:1179961-1179980 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr4_2:1180030-1180049 Msa0582730:CDS 35.0%
!!! GTGCTGTTCTTATTTTACCA+GGG - chr4_2:1180052-1180071 Msa0582730:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr4_2:1180186-1180205 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr4_2:1180216-1180235 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr4_2:1180267-1180286 Msa0582730:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr4_2:1180341-1180360 Msa0582730:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr4_2:1180397-1180416 Msa0582730:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr4_2:1180406-1180425 Msa0582730:intron 35.0%
AGTGATTGATATTATACGCC+AGG - chr4_2:1180439-1180458 Msa0582730:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr4_2:1179116-1179135 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr4_2:1179137-1179156 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr4_2:1179322-1179341 Msa0582730:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr4_2:1179336-1179355 Msa0582730:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr4_2:1179781-1179800 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr4_2:1179786-1179805 None:intergenic 40.0%
TTGTGGACCTCAATATCTAC+AGG + chr4_2:1179929-1179948 None:intergenic 40.0%
TAGATATTGAGGTCCACAAG+CGG - chr4_2:1179930-1179949 Msa0582730:CDS 40.0%
!!! GGTGCTGTTCTTATTTTACC+AGG - chr4_2:1180051-1180070 Msa0582730:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr4_2:1180184-1180203 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr4_2:1180185-1180204 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr4_2:1180239-1180258 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr4_2:1180240-1180259 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr4_2:1180274-1180293 Msa0582730:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr4_2:1180318-1180337 None:intergenic 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr4_2:1180462-1180481 Msa0582730:intron 40.0%
!! ACCTCTGAAACAAGAAGTTC+TGG + chr4_2:1180466-1180485 None:intergenic 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr4_2:1180519-1180538 Msa0582730:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr4_2:1180576-1180595 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr4_2:1180584-1180603 Msa0582730:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr4_2:1179116-1179135 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr4_2:1179137-1179156 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr4_2:1179322-1179341 Msa0582730:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr4_2:1179336-1179355 Msa0582730:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr4_2:1179781-1179800 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr4_2:1179786-1179805 None:intergenic 40.0%
TTGTGGACCTCAATATCTAC+AGG + chr4_2:1179929-1179948 None:intergenic 40.0%
TAGATATTGAGGTCCACAAG+CGG - chr4_2:1179930-1179949 Msa0582730:CDS 40.0%
!!! GGTGCTGTTCTTATTTTACC+AGG - chr4_2:1180051-1180070 Msa0582730:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr4_2:1180184-1180203 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr4_2:1180185-1180204 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr4_2:1180239-1180258 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr4_2:1180240-1180259 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr4_2:1180274-1180293 Msa0582730:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr4_2:1180318-1180337 None:intergenic 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr4_2:1180462-1180481 Msa0582730:intron 40.0%
!! ACCTCTGAAACAAGAAGTTC+TGG + chr4_2:1180466-1180485 None:intergenic 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr4_2:1180519-1180538 Msa0582730:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr4_2:1180576-1180595 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr4_2:1180584-1180603 Msa0582730:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr4_2:1179329-1179348 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr4_2:1179780-1179799 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr4_2:1179866-1179885 Msa0582730:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr4_2:1179867-1179886 Msa0582730:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr4_2:1179888-1179907 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr4_2:1180275-1180294 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr4_2:1180273-1180292 Msa0582730:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr4_2:1180275-1180294 Msa0582730:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr4_2:1180317-1180336 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr4_2:1180460-1180479 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr4_2:1180513-1180532 Msa0582730:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr4_2:1180525-1180544 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr4_2:1180524-1180543 Msa0582730:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr4_2:1180525-1180544 Msa0582730:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr4_2:1180567-1180586 Msa0582730:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr4_2:1179329-1179348 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr4_2:1179780-1179799 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr4_2:1179866-1179885 Msa0582730:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr4_2:1179867-1179886 Msa0582730:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr4_2:1179888-1179907 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr4_2:1180275-1180294 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr4_2:1180273-1180292 Msa0582730:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr4_2:1180275-1180294 Msa0582730:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr4_2:1180317-1180336 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr4_2:1180460-1180479 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr4_2:1180513-1180532 Msa0582730:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr4_2:1180525-1180544 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr4_2:1180524-1180543 Msa0582730:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr4_2:1180525-1180544 Msa0582730:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr4_2:1180567-1180586 Msa0582730:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr4_2:1179544-1179563 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr4_2:1179544-1179563 None:intergenic 5.0%
TCGGGCGAAATACGATCAGA+GGG + chr4_2:1180090-1180109 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr4_2:1180221-1180240 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr4_2:1180233-1180252 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr4_2:1180299-1180318 Msa0582730:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr4_2:1180410-1180429 Msa0582730:intron 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr4_2:1180526-1180545 Msa0582730:CDS 50.0%
TCGGGCGAAATACGATCAGA+GGG + chr4_2:1180090-1180109 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr4_2:1180221-1180240 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr4_2:1180233-1180252 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr4_2:1180299-1180318 Msa0582730:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr4_2:1180410-1180429 Msa0582730:intron 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr4_2:1180526-1180545 Msa0582730:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr4_2:1179946-1179965 None:intergenic 55.0%
GAGGGGCCAATTCAAAACCC+TGG + chr4_2:1180072-1180091 None:intergenic 55.0%
CGGGCGAAATACGATCAGAG+GGG + chr4_2:1180089-1180108 None:intergenic 55.0%
CTCGGGCGAAATACGATCAG+AGG + chr4_2:1180091-1180110 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr4_2:1180300-1180319 Msa0582730:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr4_2:1180527-1180546 Msa0582730:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr4_2:1179946-1179965 None:intergenic 55.0%
GAGGGGCCAATTCAAAACCC+TGG + chr4_2:1180072-1180091 None:intergenic 55.0%
CGGGCGAAATACGATCAGAG+GGG + chr4_2:1180089-1180108 None:intergenic 55.0%
CTCGGGCGAAATACGATCAG+AGG + chr4_2:1180091-1180110 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr4_2:1180300-1180319 Msa0582730:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr4_2:1180527-1180546 Msa0582730:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr4_2:1179870-1179889 Msa0582730:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr4_2:1179875-1179894 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr4_2:1180171-1180190 Msa0582730:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr4_2:1180279-1180298 Msa0582730:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr4_2:1180280-1180299 Msa0582730:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr4_2:1180281-1180300 Msa0582730:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr4_2:1179870-1179889 Msa0582730:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr4_2:1179875-1179894 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr4_2:1180171-1180190 Msa0582730:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr4_2:1180279-1180298 Msa0582730:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr4_2:1180280-1180299 Msa0582730:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr4_2:1180281-1180300 Msa0582730:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr4_2:1180170-1180189 Msa0582730:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr4_2:1180170-1180189 Msa0582730:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 1179090 1180689 1179090 ID=Msa0582730;Name=Msa0582730
chr4_2 mRNA 1179090 1180689 1179090 ID=Msa0582730-mRNA-1;Parent=Msa0582730;Name=Msa0582730-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0|0|6|0|330
chr4_2 exon 1180509 1180689 1180509 ID=Msa0582730-mRNA-1:exon:255;Parent=Msa0582730-mRNA-1
chr4_2 exon 1179851 1180071 1179851 ID=Msa0582730-mRNA-1:exon:254;Parent=Msa0582730-mRNA-1
chr4_2 exon 1179752 1179838 1179752 ID=Msa0582730-mRNA-1:exon:253;Parent=Msa0582730-mRNA-1
chr4_2 exon 1179450 1179633 1179450 ID=Msa0582730-mRNA-1:exon:252;Parent=Msa0582730-mRNA-1
chr4_2 exon 1179305 1179416 1179305 ID=Msa0582730-mRNA-1:exon:251;Parent=Msa0582730-mRNA-1
chr4_2 exon 1179090 1179297 1179090 ID=Msa0582730-mRNA-1:exon:250;Parent=Msa0582730-mRNA-1
chr4_2 CDS 1180509 1180689 1180509 ID=Msa0582730-mRNA-1:cds;Parent=Msa0582730-mRNA-1
chr4_2 CDS 1179851 1180071 1179851 ID=Msa0582730-mRNA-1:cds;Parent=Msa0582730-mRNA-1
chr4_2 CDS 1179752 1179838 1179752 ID=Msa0582730-mRNA-1:cds;Parent=Msa0582730-mRNA-1
chr4_2 CDS 1179450 1179633 1179450 ID=Msa0582730-mRNA-1:cds;Parent=Msa0582730-mRNA-1
chr4_2 CDS 1179305 1179416 1179305 ID=Msa0582730-mRNA-1:cds;Parent=Msa0582730-mRNA-1
chr4_2 CDS 1179090 1179297 1179090 ID=Msa0582730-mRNA-1:cds;Parent=Msa0582730-mRNA-1
Gene Sequence

>Msa0582730

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGCTATCGTCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACGCCAGGACCAGAACTTCTTAGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTGGTTCTTAAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa0582730

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVHKRYFPILYLKQLFEFLMICKLNKFLLMLSSTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSIVNKIIRKEKGGYEITIVDASDGREVIDIIRQDQNFLGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFWFLKKKQFEKVQLSEMNF*