AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074597

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074597.t1 MTR_4g088920 92.513 748 34 1 1 726 166 913 0.0 1418
MS.gene074597.t1 MTR_5g068600 29.072 657 366 20 3 602 84 697 1.76e-57 208
MS.gene074597.t1 MTR_5g068600 28.972 642 357 19 18 602 198 797 7.86e-57 207
MS.gene074597.t1 MTR_1g045670 28.218 202 113 4 249 418 743 944 4.30e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074597.t1 AT1G65070 52.203 749 280 11 3 726 181 876 0.0 728
MS.gene074597.t1 AT1G65070 52.120 731 272 11 3 708 181 858 0.0 704
MS.gene074597.t1 AT1G65070 53.981 628 222 7 3 607 181 764 0.0 643
MS.gene074597.t1 AT1G65070 55.738 488 152 5 3 468 181 626 2.05e-176 519
MS.gene074597.t1 AT5G54090 29.144 549 303 14 99 597 278 790 6.29e-55 202
MS.gene074597.t1 AT3G24320 25.871 201 117 4 250 418 498 698 2.58e-11 67.8
MS.gene074597.t1 AT3G24320 25.871 201 117 4 250 418 743 943 3.37e-11 67.4

Find 164 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAATTCATTGGACTTTC+TGG 0.056329 4.3:-24164818 None:intergenic
CTCTGGAGCAACATACTTTA+TGG 0.200265 4.3:+24161305 MS.gene074597:CDS
CTCCGCTCTTGCTGCTGTTC+TGG 0.212629 4.3:-24162521 None:intergenic
AAACCTTGCAACCAACTTAT+AGG 0.224407 4.3:+24162390 MS.gene074597:CDS
CGAAAAGCAACTAAAAGATT+TGG 0.258652 4.3:+24163226 MS.gene074597:CDS
ACATCATATACTCCACAATT+TGG 0.262844 4.3:+24163359 MS.gene074597:CDS
CTTGTTCTCATTGATGAAAT+TGG 0.280062 4.3:+24162203 MS.gene074597:CDS
ATAGTACCTAAACTGAAAAT+TGG 0.281975 4.3:-24161531 None:intergenic
CCAGAAAGTCCAATGAATTA+TGG 0.282003 4.3:+24164818 MS.gene074597:CDS
TTGCATAGATTGCAATCTTT+TGG 0.292449 4.3:+24161059 MS.gene074597:CDS
CTAGAATGTGCGTGGGCATC+AGG 0.296994 4.3:+24161232 MS.gene074597:CDS
AGCAATGGTGATATTTATTA+TGG 0.313667 4.3:+24164596 MS.gene074597:CDS
TTGCATCCTCTAACTCTTGT+TGG 0.316694 4.3:-24163172 None:intergenic
TTCAAATCTATTGCTTCTTT+CGG 0.318025 4.3:-24161330 None:intergenic
AGGTCAAACCAAGGAAGTTT+TGG 0.325111 4.3:-24161924 None:intergenic
AACCTTGCAACCAACTTATA+GGG 0.326348 4.3:+24162391 MS.gene074597:CDS
TCATTAGATCAGAACGAAAA+AGG 0.327607 4.3:+24161115 MS.gene074597:CDS
CTTGGCAGGCAGATGCATTC+CGG 0.328681 4.3:-24161895 None:intergenic
TTCTTAGATGTTTGCACCGC+TGG 0.347990 4.3:-24164620 None:intergenic
GATCGACGCTTAGTAATAAA+TGG 0.355822 4.3:-24161210 None:intergenic
GAAAAGCAACTAAAAGATTT+GGG 0.371137 4.3:+24163227 MS.gene074597:CDS
ATCAGAGATAAAATATTTGT+TGG 0.373046 4.3:+24161440 MS.gene074597:CDS
TCTGAGTTGGGTAATGGAAA+TGG 0.381561 4.3:+24161708 MS.gene074597:CDS
ATTACAAAGAGAACTGAATA+TGG 0.386756 4.3:-24164716 None:intergenic
AACTAGTTCTCCCACTCATC+AGG 0.387558 4.3:+24163538 MS.gene074597:CDS
CAAGGTCTTCTGCCTCCCTT+TGG 0.387704 4.3:-24163106 None:intergenic
AGGGTTCTCTGGGGATGTAT+TGG 0.387828 4.3:+24162410 MS.gene074597:CDS
GTTCTGAATGCCAGCAGCTC+TGG 0.388227 4.3:+24161288 MS.gene074597:CDS
AACCAACTTATAGGGTTCTC+TGG 0.388468 4.3:+24162399 MS.gene074597:CDS
GTAATACATGGGATGGGCAC+TGG 0.389103 4.3:+24164734 MS.gene074597:CDS
TTGTAATTTCCTAATGGGCT+TGG 0.389277 4.3:+24161020 None:intergenic
GAAACAATCTTGGTACAGTA+TGG 0.389406 4.3:+24163449 MS.gene074597:CDS
TTAAGCATAGCGCAATCTAT+TGG 0.392431 4.3:+24162446 MS.gene074597:CDS
AATTCTTCTGAGTTGGGTAA+TGG 0.397648 4.3:+24161702 MS.gene074597:CDS
TCCTAATGGGCTTGGAGCGC+AGG 0.398236 4.3:+24161028 None:intergenic
AATGCTCTATCAGTCATTAC+AGG 0.405453 4.3:+24162547 MS.gene074597:CDS
GTTCATAATTTCTGCATGAA+TGG 0.405550 4.3:-24162612 None:intergenic
CAAGTCCGTGTGAAGGGATT+GGG 0.412733 4.3:+24163386 MS.gene074597:CDS
GTCATCTCAGGACCTAATAC+TGG 0.416951 4.3:+24161819 MS.gene074597:CDS
GTTGACTTCAAAATTAGATC+TGG 0.420665 4.3:+24161783 MS.gene074597:CDS
TGCTGATCTAAGTACTTTGA+AGG 0.425952 4.3:+24162322 MS.gene074597:CDS
TCAGTTCTCTTTGTAATACA+TGG 0.427691 4.3:+24164722 MS.gene074597:CDS
ATTTGAACAACATGGAAGTT+AGG 0.428354 4.3:+24161346 MS.gene074597:CDS
ACTAGAGTGGTGGTCATCTC+AGG 0.432380 4.3:+24161807 MS.gene074597:CDS
TAATACATGGGATGGGCACT+GGG 0.432402 4.3:+24164735 MS.gene074597:CDS
GTCTGGAAATTCTTCTGAGT+TGG 0.433211 4.3:+24161695 MS.gene074597:CDS
GCATTCAGAACTATACCTTC+TGG 0.438902 4.3:-24161276 None:intergenic
TCTGGAAATTCTTCTGAGTT+GGG 0.439306 4.3:+24161696 MS.gene074597:CDS
GCCTATGCTCAATGGATGAA+TGG 0.442164 4.3:+24161501 MS.gene074597:CDS
GCAAGTCCGTGTGAAGGGAT+TGG 0.444020 4.3:+24163385 MS.gene074597:CDS
TGAGTGGGAGAACTAGTTGC+AGG 0.444981 4.3:-24163533 None:intergenic
ACGGGTCCAACAAGAGTTAG+AGG 0.448882 4.3:+24163166 MS.gene074597:CDS
ACAGTACATCCATAATTCAT+TGG 0.451719 4.3:-24164827 None:intergenic
TATGGCAAAGGAAGCTCAAC+GGG 0.452879 4.3:+24163148 MS.gene074597:CDS
AGAAAAGTCCAAAACTTCCT+TGG 0.454680 4.3:+24161916 MS.gene074597:CDS
AATCCTGGACTCTTTATTGA+AGG 0.459366 4.3:+24161146 MS.gene074597:CDS
TAGACGTGAAACGATGCTTA+TGG 0.459950 4.3:+24163130 MS.gene074597:CDS
CTTTAATTATTGAATTGAGT+TGG 0.464631 4.3:-24163256 None:intergenic
GTTAAAGGCTCAAGCTGAAA+AGG 0.465641 4.3:+24162583 MS.gene074597:CDS
TTCAAACTCTGAAGCGGCCG+AGG 0.466077 4.3:+24161371 MS.gene074597:CDS
ACCAACTTATAGGGTTCTCT+GGG 0.467907 4.3:+24162400 MS.gene074597:CDS
TTCAATGAAAACGTTGGGCC+TGG 0.468162 4.3:+24161854 MS.gene074597:CDS
GCAGGATTCTTTGCACTTGG+TGG 0.477236 4.3:-24163515 None:intergenic
CCGCAGATATTGTAAGATAC+TGG 0.478412 4.3:-24162264 None:intergenic
GTATGTTGCTCCAGAGCTGC+TGG 0.478675 4.3:-24161298 None:intergenic
GCCACAGTGGTAGAATTGCC+TGG 0.478854 4.3:+24163419 MS.gene074597:CDS
CAATGACATTGCGGTCGTGC+AGG 0.479424 4.3:+24161581 MS.gene074597:CDS
CTCATTGATGAAATTGGTAG+TGG 0.480474 4.3:+24162209 MS.gene074597:CDS
AGAGGATGCAAAATCTCAAA+TGG 0.483805 4.3:+24163184 MS.gene074597:CDS
ATCTAAGTACTTTGAAGGAA+AGG 0.486923 4.3:+24162327 MS.gene074597:CDS
TCTAAGTACTTTGAAGGAAA+GGG 0.492540 4.3:+24162328 MS.gene074597:CDS
GATAATGTCACACTAAGGTC+TGG 0.494415 4.3:+24161678 MS.gene074597:CDS
ACTGCTTCAATGAAAACGTT+GGG 0.494465 4.3:+24161849 MS.gene074597:CDS
CAAGAGCTGCCTATGCTCAA+TGG 0.496220 4.3:+24161493 MS.gene074597:CDS
CCTATGCTCAATGGATGAAT+GGG 0.497615 4.3:+24161502 MS.gene074597:CDS
GTTGCAGGATTCTTTGCACT+TGG 0.499764 4.3:-24163518 None:intergenic
CTATTGTAGAAACCACTGAA+TGG 0.501864 4.3:+24164542 MS.gene074597:intron
CGATTTAACAGTAAATATTG+AGG 0.507073 4.3:+24161608 MS.gene074597:CDS
ACCTGCTTTCCCTGATGAGT+GGG 0.510949 4.3:-24163548 None:intergenic
TCTCTTTGTAATACATGGGA+TGG 0.512107 4.3:+24164727 MS.gene074597:CDS
TATGCGGCATCCATTACTCC+TGG 0.512692 4.3:+24161632 MS.gene074597:CDS
CGCTGATTGTCATCTCAAGA+TGG 0.514272 4.3:-24164685 None:intergenic
ACCACTGAATGGAAAATCCC+GGG 0.517125 4.3:+24164553 MS.gene074597:CDS
ATGCGATCAGCGCCACTGAT+GGG 0.523837 4.3:-24163335 None:intergenic
AACCCTATAAGTTGGTTGCA+AGG 0.524314 4.3:-24162393 None:intergenic
GCATCGTTTCACGTCTATCA+AGG 0.526470 4.3:-24163124 None:intergenic
CCACAGTGGTAGAATTGCCT+GGG 0.526487 4.3:+24163420 MS.gene074597:CDS
TCCCACTCATCAGGGAAAGC+AGG 0.529174 4.3:+24163547 MS.gene074597:CDS
TTCAGTTTAGGTACTATTGG+AGG 0.531767 4.3:+24161537 MS.gene074597:CDS
GTTCTGATCTAATGATCTCC+AGG 0.531958 4.3:-24161107 None:intergenic
ACTCAAAATTGCTCTTTCCT+CGG 0.533024 4.3:-24161388 None:intergenic
AACCACTGAATGGAAAATCC+CGG 0.535658 4.3:+24164552 MS.gene074597:CDS
CTTCCTTCAATAAAGAGTCC+AGG 0.535939 4.3:-24161149 None:intergenic
CAGTTCTCTTTGTAATACAT+GGG 0.538091 4.3:+24164723 MS.gene074597:CDS
TGGGCATCAGGGCTTCGTAT+AGG 0.539792 4.3:+24161244 MS.gene074597:CDS
TAATTGACCATGCACAAAAG+TGG 0.545555 4.3:+24162483 MS.gene074597:CDS
GGAGAGCAAGTCCGTGTGAA+GGG 0.549755 4.3:+24163380 MS.gene074597:CDS
CCCCAGAGAACCCTATAAGT+TGG 0.550494 4.3:-24162401 None:intergenic
CGGACTTGCTCTCCAAATTG+TGG 0.554429 4.3:-24163371 None:intergenic
TGGGGATGATGAAACAATCT+TGG 0.554483 4.3:+24163439 MS.gene074597:CDS
GTTCATCTCTAAGTTACCCC+GGG 0.556248 4.3:-24164570 None:intergenic
TCTGCGGGAACATGTTAACT+TGG 0.556527 4.3:+24162280 MS.gene074597:CDS
AGAGACGACTCCAGGAGTAA+TGG 0.558135 4.3:-24161642 None:intergenic
AACCAGAACAGCAGCAAGAG+CGG 0.560885 4.3:+24162519 MS.gene074597:CDS
GATTTAACAGTAAATATTGA+GGG 0.563255 4.3:+24161609 MS.gene074597:CDS
TATAGGTATTTGCTTCCAGA+AGG 0.564358 4.3:+24161261 MS.gene074597:CDS
TGATAGAGCAAGTGAAGACC+TGG 0.568238 4.3:+24161089 MS.gene074597:CDS
CTCTTTGTAATACATGGGAT+GGG 0.569356 4.3:+24164728 MS.gene074597:CDS
AGGTTGCAATTCTGTTGAAG+AGG 0.570911 4.3:+24161557 MS.gene074597:CDS
GCATCACTTATGTCAAAAGC+CGG 0.571118 4.3:+24161876 MS.gene074597:CDS
AACTGATCCTTCAGAAGGTG+TGG 0.571658 4.3:+24162232 MS.gene074597:CDS
CAGTATCTTACAATATCTGC+GGG 0.572845 4.3:+24162265 MS.gene074597:CDS
TTCCTCCCAATCCCTTCACA+CGG 0.581458 4.3:-24163391 None:intergenic
GCCACTGATGGGAGAACCAA+CGG 0.582829 4.3:-24163324 None:intergenic
AAGATTGTTTCATCATCCCC+AGG 0.584283 4.3:-24163437 None:intergenic
AACTGCTTCAATGAAAACGT+TGG 0.585712 4.3:+24161848 MS.gene074597:CDS
TGGAGAGCAAGTCCGTGTGA+AGG 0.586036 4.3:+24163379 MS.gene074597:CDS
TGAAACGATGCTTATGGCAA+AGG 0.587621 4.3:+24163136 MS.gene074597:CDS
TTAGAGATGAACAGCAGCAA+TGG 0.589819 4.3:+24164581 MS.gene074597:CDS
TGTTCATCTCTAAGTTACCC+CGG 0.590270 4.3:-24164571 None:intergenic
ACTAGTTCTCCCACTCATCA+GGG 0.590763 4.3:+24163539 MS.gene074597:CDS
GCCGTTGGTTCTCCCATCAG+TGG 0.592897 4.3:+24163323 MS.gene074597:CDS
TTTCAGATAATGTCACACTA+AGG 0.593354 4.3:+24161673 MS.gene074597:CDS
TACCTGCTTTCCCTGATGAG+TGG 0.594282 4.3:-24163549 None:intergenic
TAGAATGTGCGTGGGCATCA+GGG 0.594705 4.3:+24161233 MS.gene074597:CDS
AATGCGATCAGCGCCACTGA+TGG 0.596091 4.3:-24163336 None:intergenic
GCGTCGATCTAGAATGTGCG+TGG 0.598379 4.3:+24161224 MS.gene074597:CDS
AATTGACCATGCACAAAAGT+GGG 0.600519 4.3:+24162484 MS.gene074597:CDS
TAGGCTTTCAAACTCTGAAG+CGG 0.601365 4.3:+24161365 MS.gene074597:CDS
ATCTCAGGACCTAATACTGG+AGG 0.603222 4.3:+24161822 MS.gene074597:CDS
GAAAGAGCCACACCTTCTGA+AGG 0.603440 4.3:-24162239 None:intergenic
AGCAATAGATTTGAACAACA+TGG 0.612310 4.3:+24161338 MS.gene074597:CDS
GTCCGTGTGAAGGGATTGGG+AGG 0.612668 4.3:+24163389 MS.gene074597:CDS
CCAGTATCTTACAATATCTG+CGG 0.612724 4.3:+24162264 MS.gene074597:CDS
CCCATTCATCCATTGAGCAT+AGG 0.615621 4.3:-24161502 None:intergenic
GGATCTACGAGGTATGCGAC+TGG 0.616506 4.3:+24164649 MS.gene074597:CDS
GCTTCTAAAAGCGCGTCACA+AGG 0.619119 4.3:+24161738 MS.gene074597:CDS
AATTAGATCTGGAACTAGAG+TGG 0.621351 4.3:+24161794 MS.gene074597:CDS
AAAGCTCATACTCCTGCCGT+TGG 0.625973 4.3:+24163308 MS.gene074597:CDS
CAGTAAATATTGAGGGTATG+CGG 0.626418 4.3:+24161616 MS.gene074597:CDS
TTATGGCAAAGGAAGCTCAA+CGG 0.627066 4.3:+24163147 MS.gene074597:CDS
AGTGGAACTGATCCTTCAGA+AGG 0.631076 4.3:+24162227 MS.gene074597:CDS
CTGATGGGAGAACCAACGGC+AGG 0.643450 4.3:-24163320 None:intergenic
TTCCAGTGAAAATTCCATTG+CGG 0.649211 4.3:-24162369 None:intergenic
CGTCGATCTAGAATGTGCGT+GGG 0.653354 4.3:+24161225 MS.gene074597:CDS
TGACCATGCACAAAAGTGGG+TGG 0.654188 4.3:+24162487 MS.gene074597:CDS
GGGTAATGGAAATGGAACAA+TGG 0.655085 4.3:+24161716 MS.gene074597:CDS
GAACAGCAGCAAGAGCGGAG+AGG 0.655853 4.3:+24162524 MS.gene074597:CDS
GCAAACATCTAAGAATACTG+TGG 0.660918 4.3:+24164628 MS.gene074597:CDS
GCTCTATCAGTCATTACAGG+AGG 0.665919 4.3:+24162550 MS.gene074597:CDS
TCTCAGGACCTAATACTGGA+GGG 0.667789 4.3:+24161823 MS.gene074597:CDS
TAGATCTGGAACTAGAGTGG+TGG 0.673809 4.3:+24161797 MS.gene074597:CDS
ACTTAGATCAGCATAATGAG+TGG 0.681388 4.3:-24162312 None:intergenic
CACAGTGGTAGAATTGCCTG+GGG 0.691114 4.3:+24163421 MS.gene074597:CDS
TGATATTTATTATGGTCCAG+CGG 0.693969 4.3:+24164604 MS.gene074597:CDS
AATTATGAACGTGTACTCTG+AGG 0.698166 4.3:+24162625 MS.gene074597:CDS
AATACATGGGATGGGCACTG+GGG 0.701367 4.3:+24164736 MS.gene074597:CDS
TGAAGAGGACAATGACATTG+CGG 0.707528 4.3:+24161572 MS.gene074597:CDS
CCCAGGCAATTCTACCACTG+TGG 0.714085 4.3:-24163420 None:intergenic
GGGAGGAAAATTAGCCACAG+TGG 0.714859 4.3:+24163406 MS.gene074597:CDS
CCACTGAATGGAAAATCCCG+GGG 0.744139 4.3:+24164554 MS.gene074597:CDS
AAGAATACTGTGGATCTACG+AGG 0.748281 4.3:+24164638 MS.gene074597:CDS
GGTTCAAAATGAGTGACACG+AGG 0.753470 4.3:-24164797 None:intergenic
CCAACTTATAGGGTTCTCTG+GGG 0.797932 4.3:+24162401 MS.gene074597:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATCATG+TGG + chr4.3:24162055-24162074 MS.gene074597:intron 10.0%
!!! AATTTAGAATTGATATATTT+TGG + chr4.3:24163985-24164004 MS.gene074597:intron 10.0%
!! AAATACCTTTCAATAAAATT+TGG - chr4.3:24163921-24163940 None:intergenic 15.0%
!! AATTTCAGATAAACTTTAAA+AGG - chr4.3:24162743-24162762 None:intergenic 15.0%
!! ATAATGATTATCATACTATA+TGG - chr4.3:24162716-24162735 None:intergenic 15.0%
!! ATATAAGTAAAAGAAGTTAT+TGG + chr4.3:24163885-24163904 MS.gene074597:intron 15.0%
!!! AAGGTATTTTATATTTAATC+TGG + chr4.3:24163932-24163951 MS.gene074597:intron 15.0%
!!! AATTTTGTCTAAATCAAATT+AGG - chr4.3:24164405-24164424 None:intergenic 15.0%
!!! ATTTCAGATAAACTTTAAAA+GGG - chr4.3:24162742-24162761 None:intergenic 15.0%
!!! TTACTATTTTAGTAAGAATT+GGG + chr4.3:24164102-24164121 MS.gene074597:intron 15.0%
!! ATATTTAAATTAACAGCTCT+TGG - chr4.3:24162893-24162912 None:intergenic 20.0%
!! ATCAGAGATAAAATATTTGT+TGG + chr4.3:24161440-24161459 MS.gene074597:CDS 20.0%
!! CTTTAATTATTGAATTGAGT+TGG - chr4.3:24163259-24163278 None:intergenic 20.0%
!! GATTTAACAGTAAATATTGA+GGG + chr4.3:24161609-24161628 MS.gene074597:CDS 20.0%
!! TTGCAAAATAACTTTCTTAA+TGG - chr4.3:24163665-24163684 None:intergenic 20.0%
!!! ATTATCTAAAATATTCTTCG+TGG + chr4.3:24163851-24163870 MS.gene074597:intron 20.0%
!!! CATTTTTTCTTTTGAAGTAA+TGG + chr4.3:24163955-24163974 MS.gene074597:intron 20.0%
!!! CTTATTATATTTGAAACTAG+AGG - chr4.3:24163752-24163771 None:intergenic 20.0%
!!! GAAATCCAAATTTTATTGAA+AGG + chr4.3:24163913-24163932 MS.gene074597:intron 20.0%
!!! GTTACTATTTTAGTAAGAAT+TGG + chr4.3:24164101-24164120 MS.gene074597:intron 20.0%
!!! TACTATTTTAGTAAGAATTG+GGG + chr4.3:24164103-24164122 MS.gene074597:intron 20.0%
!!! TTAAGAAGCCAATTTTAAAA+AGG - chr4.3:24164382-24164401 None:intergenic 20.0%
! AAAAAAGTTCAGATATTACC+TGG - chr4.3:24161974-24161993 None:intergenic 25.0%
! AAATAGTAACAAATACTCTC+CGG - chr4.3:24164091-24164110 None:intergenic 25.0%
! AGCAATGGTGATATTTATTA+TGG + chr4.3:24164596-24164615 MS.gene074597:CDS 25.0%
! ATAGTACCTAAACTGAAAAT+TGG - chr4.3:24161534-24161553 None:intergenic 25.0%
! ATCCAAAAAAGTCTATGTTT+GGG - chr4.3:24164014-24164033 None:intergenic 25.0%
! ATTAATAGATATCCAATCCT+CGG + chr4.3:24162861-24162880 MS.gene074597:intron 25.0%
! ATTACAAAGAGAACTGAATA+TGG - chr4.3:24164719-24164738 None:intergenic 25.0%
! ATTCAATGTGCCTATATTAT+AGG - chr4.3:24164332-24164351 None:intergenic 25.0%
! CAATTTCCAAATATGATGTT+AGG - chr4.3:24164295-24164314 None:intergenic 25.0%
! CGATTTAACAGTAAATATTG+AGG + chr4.3:24161608-24161627 MS.gene074597:CDS 25.0%
! CTAACATCATATTTGGAAAT+TGG + chr4.3:24164293-24164312 MS.gene074597:intron 25.0%
! GAAAAGCAACTAAAAGATTT+GGG + chr4.3:24163227-24163246 MS.gene074597:CDS 25.0%
! GGTATTTATTACAGAAAAAC+AGG - chr4.3:24164267-24164286 None:intergenic 25.0%
! GTTGTTCTATCATGTAATTT+GGG + chr4.3:24164147-24164166 MS.gene074597:intron 25.0%
! TATCCAAAAAAGTCTATGTT+TGG - chr4.3:24164015-24164034 None:intergenic 25.0%
! TTAATATAGTTAACCTGTCA+AGG + chr4.3:24163615-24163634 MS.gene074597:intron 25.0%
! TTATTATAGTTTCTTCTCCT+TGG + chr4.3:24162689-24162708 MS.gene074597:intron 25.0%
! TTCAAATCTATTGCTTCTTT+CGG - chr4.3:24161333-24161352 None:intergenic 25.0%
! TTCAGATCATCCTATAATAT+AGG + chr4.3:24164319-24164338 MS.gene074597:intron 25.0%
!! AAAATCTCTCAACTTTTAGT+GGG + chr4.3:24162132-24162151 MS.gene074597:intron 25.0%
!! ATATGTCCAATTTTCAGTTT+AGG + chr4.3:24161525-24161544 MS.gene074597:CDS 25.0%
!! ATTTTCAGTTTAGGTACTAT+TGG + chr4.3:24161534-24161553 MS.gene074597:CDS 25.0%
!! GTTTTTCTGTAATAAATACC+AGG + chr4.3:24164267-24164286 MS.gene074597:intron 25.0%
!! TAACGGCATTATGAAAATTT+TGG - chr4.3:24162932-24162951 None:intergenic 25.0%
!! TTTTTGGATATATCCAATAG+CGG + chr4.3:24164025-24164044 MS.gene074597:intron 25.0%
!!! AAGTATCGTCTCAAATTTTT+CGG + chr4.3:24161169-24161188 MS.gene074597:CDS 25.0%
!!! ATCTGTCTCCTTTTTAAAAT+TGG + chr4.3:24164371-24164390 MS.gene074597:intron 25.0%
AAAAAGGAACATAGAAATCC+TGG + chr4.3:24161131-24161150 MS.gene074597:CDS 30.0%
AATTACATGATAGAACAACG+AGG - chr4.3:24164146-24164165 None:intergenic 30.0%
ACAGTACATCCATAATTCAT+TGG - chr4.3:24164830-24164849 None:intergenic 30.0%
ACATCATATACTCCACAATT+TGG + chr4.3:24163359-24163378 MS.gene074597:CDS 30.0%
AGCAATAGATTTGAACAACA+TGG + chr4.3:24161338-24161357 MS.gene074597:CDS 30.0%
AGTAATCTTATCTAGTGAGT+TGG + chr4.3:24163687-24163706 MS.gene074597:intron 30.0%
ATTTGAACAACATGGAAGTT+AGG + chr4.3:24161346-24161365 MS.gene074597:CDS 30.0%
CAGTTCTCTTTGTAATACAT+GGG + chr4.3:24164723-24164742 MS.gene074597:CDS 30.0%
CATTACAGGAGGAAAAAAAT+CGG + chr4.3:24162561-24162580 MS.gene074597:CDS 30.0%
CGAAAAGCAACTAAAAGATT+TGG + chr4.3:24163226-24163245 MS.gene074597:CDS 30.0%
CGTTGTTCTATCATGTAATT+TGG + chr4.3:24164146-24164165 MS.gene074597:intron 30.0%
CTTGTTCTCATTGATGAAAT+TGG + chr4.3:24162203-24162222 MS.gene074597:CDS 30.0%
GAATATGTAAATAGCTAGAG+GGG + chr4.3:24164051-24164070 MS.gene074597:intron 30.0%
GATCTTTGCAAAAGAAGAAA+AGG - chr4.3:24163087-24163106 None:intergenic 30.0%
GGAATATGTAAATAGCTAGA+GGG + chr4.3:24164050-24164069 MS.gene074597:intron 30.0%
GGATTGGATATCTATTAATG+AGG - chr4.3:24162860-24162879 None:intergenic 30.0%
GTAATCTTATCTAGTGAGTT+GGG + chr4.3:24163688-24163707 MS.gene074597:intron 30.0%
GTTCATAATTTCTGCATGAA+TGG - chr4.3:24162615-24162634 None:intergenic 30.0%
TCAGTTCTCTTTGTAATACA+TGG + chr4.3:24164722-24164741 MS.gene074597:CDS 30.0%
TCATTAGATCAGAACGAAAA+AGG + chr4.3:24161115-24161134 MS.gene074597:CDS 30.0%
TCCAAAAAAGTCTATGTTTG+GGG - chr4.3:24164013-24164032 None:intergenic 30.0%
TGATATTTATTATGGTCCAG+CGG + chr4.3:24164604-24164623 MS.gene074597:CDS 30.0%
TTAATAGATATCCAATCCTC+GGG + chr4.3:24162862-24162881 MS.gene074597:intron 30.0%
TTATCATACTATATGGACCA+AGG - chr4.3:24162709-24162728 None:intergenic 30.0%
TTTCAGATAATGTCACACTA+AGG + chr4.3:24161673-24161692 MS.gene074597:CDS 30.0%
! AAGTTGAGAGATTTTGTTCA+AGG - chr4.3:24162127-24162146 None:intergenic 30.0%
! AGTATCGTCTCAAATTTTTC+GGG + chr4.3:24161170-24161189 MS.gene074597:CDS 30.0%
! AGTTGAGAGATTTTGTTCAA+GGG - chr4.3:24162126-24162145 None:intergenic 30.0%
! ATCTAAGTACTTTGAAGGAA+AGG + chr4.3:24162327-24162346 MS.gene074597:CDS 30.0%
! ATGAAAATTTTGGATGGAAG+AGG - chr4.3:24162922-24162941 None:intergenic 30.0%
! CAAAATCTCTCAACTTTTAG+TGG + chr4.3:24162131-24162150 MS.gene074597:intron 30.0%
! GGCATTATGAAAATTTTGGA+TGG - chr4.3:24162928-24162947 None:intergenic 30.0%
! GTTGACTTCAAAATTAGATC+TGG + chr4.3:24161783-24161802 MS.gene074597:CDS 30.0%
! TCTAAGTACTTTGAAGGAAA+GGG + chr4.3:24162328-24162347 MS.gene074597:CDS 30.0%
! TTCTTTTGCAAAGATCCAAA+GGG + chr4.3:24163091-24163110 MS.gene074597:intron 30.0%
! TTGCATAGATTGCAATCTTT+TGG + chr4.3:24161059-24161078 MS.gene074597:CDS 30.0%
! TTTCATAATGCCGTTATTTC+TGG + chr4.3:24162936-24162955 MS.gene074597:intron 30.0%
!! TTCATAATGCCGTTATTTCT+GGG + chr4.3:24162937-24162956 MS.gene074597:intron 30.0%
!!! GATCTAATTTTGAAGTCAAC+TGG - chr4.3:24161783-24161802 None:intergenic 30.0%
AAACCTTGCAACCAACTTAT+AGG + chr4.3:24162390-24162409 MS.gene074597:CDS 35.0%
AACCTTGCAACCAACTTATA+GGG + chr4.3:24162391-24162410 MS.gene074597:CDS 35.0%
AACTGCTTCAATGAAAACGT+TGG + chr4.3:24161848-24161867 MS.gene074597:CDS 35.0%
AATCCTGGACTCTTTATTGA+AGG + chr4.3:24161146-24161165 MS.gene074597:CDS 35.0%
AATGCTCTATCAGTCATTAC+AGG + chr4.3:24162547-24162566 MS.gene074597:CDS 35.0%
AATTATGAACGTGTACTCTG+AGG + chr4.3:24162625-24162644 MS.gene074597:CDS 35.0%
AATTGACCATGCACAAAAGT+GGG + chr4.3:24162484-24162503 MS.gene074597:CDS 35.0%
ACCACAAAATCAAAGTGTGA+TGG + chr4.3:24162796-24162815 MS.gene074597:intron 35.0%
ACTCAAAATTGCTCTTTCCT+CGG - chr4.3:24161391-24161410 None:intergenic 35.0%
ACTGCTTCAATGAAAACGTT+GGG + chr4.3:24161849-24161868 MS.gene074597:CDS 35.0%
ACTTAGATCAGCATAATGAG+TGG - chr4.3:24162315-24162334 None:intergenic 35.0%
AGAAAAGTCCAAAACTTCCT+TGG + chr4.3:24161916-24161935 MS.gene074597:CDS 35.0%
AGAAGAAAAGGAAAAGAGTG+AGG - chr4.3:24163075-24163094 None:intergenic 35.0%
AGAGGATGCAAAATCTCAAA+TGG + chr4.3:24163184-24163203 MS.gene074597:CDS 35.0%
CAAATATGATGTTAGGAACC+TGG - chr4.3:24164288-24164307 None:intergenic 35.0%
CAGGTTCCTAACATCATATT+TGG + chr4.3:24164286-24164305 MS.gene074597:intron 35.0%
CAGTATCTTACAATATCTGC+GGG + chr4.3:24162265-24162284 MS.gene074597:CDS 35.0%
CCAGAAAGTCCAATGAATTA+TGG + chr4.3:24164818-24164837 MS.gene074597:CDS 35.0%
CCAGTATCTTACAATATCTG+CGG + chr4.3:24162264-24162283 MS.gene074597:CDS 35.0%
CCATAATTCATTGGACTTTC+TGG - chr4.3:24164821-24164840 None:intergenic 35.0%
CTATTGTAGAAACCACTGAA+TGG + chr4.3:24164542-24164561 MS.gene074597:intron 35.0%
CTCATTGATGAAATTGGTAG+TGG + chr4.3:24162209-24162228 MS.gene074597:CDS 35.0%
CTCTTTGTAATACATGGGAT+GGG + chr4.3:24164728-24164747 MS.gene074597:CDS 35.0%
GAAACAATCTTGGTACAGTA+TGG + chr4.3:24163449-24163468 MS.gene074597:CDS 35.0%
GAAGAAAAGGAAAAGAGTGA+GGG - chr4.3:24163074-24163093 None:intergenic 35.0%
GATCGACGCTTAGTAATAAA+TGG - chr4.3:24161213-24161232 None:intergenic 35.0%
GCAAACATCTAAGAATACTG+TGG + chr4.3:24164628-24164647 MS.gene074597:CDS 35.0%
GGAGGAAAAAAATCGGTTAA+AGG + chr4.3:24162568-24162587 MS.gene074597:CDS 35.0%
GGATATCTATTAATGAGGCA+CGG - chr4.3:24162855-24162874 None:intergenic 35.0%
GGGAATATGTAAATAGCTAG+AGG + chr4.3:24164049-24164068 MS.gene074597:intron 35.0%
TAATAGATATCCAATCCTCG+GGG + chr4.3:24162863-24162882 MS.gene074597:intron 35.0%
TAATTGACCATGCACAAAAG+TGG + chr4.3:24162483-24162502 MS.gene074597:CDS 35.0%
TATAGGTATTTGCTTCCAGA+AGG + chr4.3:24161261-24161280 MS.gene074597:CDS 35.0%
TATCATGTAATTTGGGTGAC+CGG + chr4.3:24164154-24164173 MS.gene074597:intron 35.0%
TCTCTTTGTAATACATGGGA+TGG + chr4.3:24164727-24164746 MS.gene074597:CDS 35.0%
TCTGGAAATTCTTCTGAGTT+GGG + chr4.3:24161696-24161715 MS.gene074597:CDS 35.0%
TGCTGATCTAAGTACTTTGA+AGG + chr4.3:24162322-24162341 MS.gene074597:CDS 35.0%
TTAAGCATAGCGCAATCTAT+TGG + chr4.3:24162446-24162465 MS.gene074597:CDS 35.0%
TTCAGTTTAGGTACTATTGG+AGG + chr4.3:24161537-24161556 MS.gene074597:CDS 35.0%
TTCCAGTGAAAATTCCATTG+CGG - chr4.3:24162372-24162391 None:intergenic 35.0%
! AATTAGATCTGGAACTAGAG+TGG + chr4.3:24161794-24161813 MS.gene074597:CDS 35.0%
! AATTCTTCTGAGTTGGGTAA+TGG + chr4.3:24161702-24161721 MS.gene074597:CDS 35.0%
! ACCATTTTCCCCAGAAATAA+CGG - chr4.3:24162949-24162968 None:intergenic 35.0%
! AGTATGAGCTTTTACAATGG+AGG - chr4.3:24163300-24163319 None:intergenic 35.0%
! CAGTAAATATTGAGGGTATG+CGG + chr4.3:24161616-24161635 MS.gene074597:CDS 35.0%
! CTTCTTTTGCAAAGATCCAA+AGG + chr4.3:24163090-24163109 MS.gene074597:intron 35.0%
!! AGGAGTATGAGCTTTTACAA+TGG - chr4.3:24163303-24163322 None:intergenic 35.0%
!! GAGAACAAGTGATTGTTTTG+AGG - chr4.3:24162192-24162211 None:intergenic 35.0%
!! TATCCGTAAGTTTTTGGAAG+TGG + chr4.3:24162166-24162185 MS.gene074597:CDS 35.0%
!! TCATAATGCCGTTATTTCTG+GGG + chr4.3:24162938-24162957 MS.gene074597:intron 35.0%
!! TCCATCACACTTTGATTTTG+TGG - chr4.3:24162800-24162819 None:intergenic 35.0%
!!! AGGAAGTTTTGGACTTTTCT+TGG - chr4.3:24161916-24161935 None:intergenic 35.0%
!!! ATGTTTTGAAAATGCCGCAA+TGG + chr4.3:24162355-24162374 MS.gene074597:CDS 35.0%
!!! TCCCCAAACATAGACTTTTT+TGG + chr4.3:24164009-24164028 MS.gene074597:intron 35.0%
AACATTCAAGACCCAACAGA+TGG - chr4.3:24164437-24164456 None:intergenic 40.0%
AACCAACTTATAGGGTTCTC+TGG + chr4.3:24162399-24162418 MS.gene074597:CDS 40.0%
AACCACTGAATGGAAAATCC+CGG + chr4.3:24164552-24164571 MS.gene074597:CDS 40.0%
AAGAATACTGTGGATCTACG+AGG + chr4.3:24164638-24164657 MS.gene074597:CDS 40.0%
AAGATTGTTTCATCATCCCC+AGG - chr4.3:24163440-24163459 None:intergenic 40.0%
ACATTCAAGACCCAACAGAT+GGG - chr4.3:24164436-24164455 None:intergenic 40.0%
ACCAACTTATAGGGTTCTCT+GGG + chr4.3:24162400-24162419 MS.gene074597:CDS 40.0%
AGGCCACTTCCAAAAACTTA+CGG - chr4.3:24162172-24162191 None:intergenic 40.0%
AGGTTGCAATTCTGTTGAAG+AGG + chr4.3:24161557-24161576 MS.gene074597:CDS 40.0%
CCGCAGATATTGTAAGATAC+TGG - chr4.3:24162267-24162286 None:intergenic 40.0%
CCTATGCTCAATGGATGAAT+GGG + chr4.3:24161502-24161521 MS.gene074597:CDS 40.0%
CTCATTGCTTTGCACTTTCT+TGG + chr4.3:24163034-24163053 MS.gene074597:intron 40.0%
CTCCAATATCTGCAAGGATA+AGG - chr4.3:24161947-24161966 None:intergenic 40.0%
CTTCCTTCAATAAAGAGTCC+AGG - chr4.3:24161152-24161171 None:intergenic 40.0%
GACATTCAATTACAGACTGC+AGG - chr4.3:24162998-24163017 None:intergenic 40.0%
GACCTTATCCTTGCAGATAT+TGG + chr4.3:24161942-24161961 MS.gene074597:intron 40.0%
GATAAGACAGTTAGAGAGGA+AGG + chr4.3:24163720-24163739 MS.gene074597:intron 40.0%
GATAATGTCACACTAAGGTC+TGG + chr4.3:24161678-24161697 MS.gene074597:CDS 40.0%
GCATCACTTATGTCAAAAGC+CGG + chr4.3:24161876-24161895 MS.gene074597:CDS 40.0%
GCATTCAGAACTATACCTTC+TGG - chr4.3:24161279-24161298 None:intergenic 40.0%
GTCTGGAAATTCTTCTGAGT+TGG + chr4.3:24161695-24161714 MS.gene074597:CDS 40.0%
GTTAAAGGCTCAAGCTGAAA+AGG + chr4.3:24162583-24162602 MS.gene074597:CDS 40.0%
GTTCTGATCTAATGATCTCC+AGG - chr4.3:24161110-24161129 None:intergenic 40.0%
TAGACGTGAAACGATGCTTA+TGG + chr4.3:24163130-24163149 MS.gene074597:CDS 40.0%
TCTGTACACTAACGCTTTGA+AGG + chr4.3:24164467-24164486 MS.gene074597:intron 40.0%
TGAAACGATGCTTATGGCAA+AGG + chr4.3:24163136-24163155 MS.gene074597:CDS 40.0%
TGAAGAGGACAATGACATTG+CGG + chr4.3:24161572-24161591 MS.gene074597:CDS 40.0%
TGGGGATGATGAAACAATCT+TGG + chr4.3:24163439-24163458 MS.gene074597:CDS 40.0%
TGTCAAGGAAGAAAACAGAG+TGG + chr4.3:24163630-24163649 MS.gene074597:intron 40.0%
TGTTCATCTCTAAGTTACCC+CGG - chr4.3:24164574-24164593 None:intergenic 40.0%
TTACATATTCCCTCCGCTAT+TGG - chr4.3:24164041-24164060 None:intergenic 40.0%
TTAGAGATGAACAGCAGCAA+TGG + chr4.3:24164581-24164600 MS.gene074597:CDS 40.0%
TTAGTAAGAATTGGGGCATG+TGG + chr4.3:24164110-24164129 MS.gene074597:intron 40.0%
TTATGGCAAAGGAAGCTCAA+CGG + chr4.3:24163147-24163166 MS.gene074597:CDS 40.0%
TTGCATCCTCTAACTCTTGT+TGG - chr4.3:24163175-24163194 None:intergenic 40.0%
TTGGATATATCCAATAGCGG+AGG + chr4.3:24164028-24164047 MS.gene074597:intron 40.0%
TTGGGATAAGACAGTTAGAG+AGG + chr4.3:24163716-24163735 MS.gene074597:intron 40.0%
! ACTCTGTTTTCTTCCTTGAC+AGG - chr4.3:24163631-24163650 None:intergenic 40.0%
! AGGTCAAACCAAGGAAGTTT+TGG - chr4.3:24161927-24161946 None:intergenic 40.0%
! CAAGGGACTGCAATTTTGAA+GGG - chr4.3:24162109-24162128 None:intergenic 40.0%
! CTCACGTATCCGTAAGTTTT+TGG + chr4.3:24162160-24162179 MS.gene074597:CDS 40.0%
! CTTATCTAGTGAGTTGGGAA+CGG + chr4.3:24163693-24163712 MS.gene074597:intron 40.0%
! CTTTTGACATAAGTGATGCC+AGG - chr4.3:24161875-24161894 None:intergenic 40.0%
! TAGGCTTTCAAACTCTGAAG+CGG + chr4.3:24161365-24161384 MS.gene074597:CDS 40.0%
! TCAAGGGACTGCAATTTTGA+AGG - chr4.3:24162110-24162129 None:intergenic 40.0%
! TGGATATATCCAATAGCGGA+GGG + chr4.3:24164029-24164048 MS.gene074597:intron 40.0%
! TTTTGCAAAGATCCAAAGGG+AGG + chr4.3:24163094-24163113 MS.gene074597:intron 40.0%
!! AACCCTATAAGTTGGTTGCA+AGG - chr4.3:24162396-24162415 None:intergenic 40.0%
!! AAGTGTGATGGATGTTGTGA+AGG + chr4.3:24162808-24162827 MS.gene074597:intron 40.0%
!! CTCTGGAGCAACATACTTTA+TGG + chr4.3:24161305-24161324 MS.gene074597:CDS 40.0%
!! GGGTAATGGAAATGGAACAA+TGG + chr4.3:24161716-24161735 MS.gene074597:CDS 40.0%
!! TCTGAGTTGGGTAATGGAAA+TGG + chr4.3:24161708-24161727 MS.gene074597:CDS 40.0%
!!! AGTTTTGGACTTTTCTTGGC+AGG - chr4.3:24161912-24161931 None:intergenic 40.0%
!!! ATTTTGAAGTCAACTGGCAC+AGG - chr4.3:24161777-24161796 None:intergenic 40.0%
!!! TTTTGAAGTCAACTGGCACA+GGG - chr4.3:24161776-24161795 None:intergenic 40.0%
AAATAGCTAGAGGGGTTGAG+AGG + chr4.3:24164059-24164078 MS.gene074597:intron 45.0%
AACTGATCCTTCAGAAGGTG+TGG + chr4.3:24162232-24162251 MS.gene074597:CDS 45.0%
AAGGAAAAGAGTGAGGGAGA+CGG - chr4.3:24163068-24163087 None:intergenic 45.0%
AATAGCTAGAGGGGTTGAGA+GGG + chr4.3:24164060-24164079 MS.gene074597:intron 45.0%
ACCACTGAATGGAAAATCCC+GGG + chr4.3:24164553-24164572 MS.gene074597:CDS 45.0%
AGTGGAACTGATCCTTCAGA+AGG + chr4.3:24162227-24162246 MS.gene074597:CDS 45.0%
ATCTCAGGACCTAATACTGG+AGG + chr4.3:24161822-24161841 MS.gene074597:CDS 45.0%
CCAACTTATAGGGTTCTCTG+GGG + chr4.3:24162401-24162420 MS.gene074597:CDS 45.0%
CCCATTCATCCATTGAGCAT+AGG - chr4.3:24161505-24161524 None:intergenic 45.0%
GCAAGGATAAGGTCAAACCA+AGG - chr4.3:24161936-24161955 None:intergenic 45.0%
GCATCGTTTCACGTCTATCA+AGG - chr4.3:24163127-24163146 None:intergenic 45.0%
GCCTATGCTCAATGGATGAA+TGG + chr4.3:24161501-24161520 MS.gene074597:CDS 45.0%
GCTCTATCAGTCATTACAGG+AGG + chr4.3:24162550-24162569 MS.gene074597:CDS 45.0%
GGTGATCTCCAATATCTGCA+AGG - chr4.3:24161953-24161972 None:intergenic 45.0%
GGTTCAAAATGAGTGACACG+AGG - chr4.3:24164800-24164819 None:intergenic 45.0%
GTCATCTCAGGACCTAATAC+TGG + chr4.3:24161819-24161838 MS.gene074597:CDS 45.0%
GTTCATCTCTAAGTTACCCC+GGG - chr4.3:24164573-24164592 None:intergenic 45.0%
GTTGCAGGATTCTTTGCACT+TGG - chr4.3:24163521-24163540 None:intergenic 45.0%
TAATACATGGGATGGGCACT+GGG + chr4.3:24164735-24164754 MS.gene074597:CDS 45.0%
TATGGCAAAGGAAGCTCAAC+GGG + chr4.3:24163148-24163167 MS.gene074597:CDS 45.0%
TCTCAGGACCTAATACTGGA+GGG + chr4.3:24161823-24161842 MS.gene074597:CDS 45.0%
TCTGCGGGAACATGTTAACT+TGG + chr4.3:24162280-24162299 MS.gene074597:CDS 45.0%
TGATAGAGCAAGTGAAGACC+TGG + chr4.3:24161089-24161108 MS.gene074597:CDS 45.0%
TGCAGATATTGGAGATCACC+AGG + chr4.3:24161953-24161972 MS.gene074597:intron 45.0%
TTCAATGAAAACGTTGGGCC+TGG + chr4.3:24161854-24161873 MS.gene074597:CDS 45.0%
TTCTTAGATGTTTGCACCGC+TGG - chr4.3:24164623-24164642 None:intergenic 45.0%
! AACTAGTTCTCCCACTCATC+AGG + chr4.3:24163538-24163557 MS.gene074597:CDS 45.0%
! ACTAGTTCTCCCACTCATCA+GGG + chr4.3:24163539-24163558 MS.gene074597:CDS 45.0%
! CGCTGATTGTCATCTCAAGA+TGG - chr4.3:24164688-24164707 None:intergenic 45.0%
! GCAGTTTTCCCTCCAGTATT+AGG - chr4.3:24161834-24161853 None:intergenic 45.0%
! TAGATCTGGAACTAGAGTGG+TGG + chr4.3:24161797-24161816 MS.gene074597:CDS 45.0%
! TGCCGCAATGGAATTTTCAC+TGG + chr4.3:24162367-24162386 MS.gene074597:CDS 45.0%
!! GCCGTTATTTCTGGGGAAAA+TGG + chr4.3:24162945-24162964 MS.gene074597:intron 45.0%
!! TGTTTTCTAGAGACGACTCC+AGG - chr4.3:24161653-24161672 None:intergenic 45.0%
!!! CGTCTCAAATTTTTCGGGCT+GGG + chr4.3:24161175-24161194 MS.gene074597:CDS 45.0%
!!! GTCTCAAATTTTTCGGGCTG+GGG + chr4.3:24161176-24161195 MS.gene074597:CDS 45.0%
!!! TCGTCTCAAATTTTTCGGGC+TGG + chr4.3:24161174-24161193 MS.gene074597:CDS 45.0%
!!! TCTCAAATTTTTCGGGCTGG+GGG + chr4.3:24161177-24161196 MS.gene074597:CDS 45.0%
AAAGCTCATACTCCTGCCGT+TGG + chr4.3:24163308-24163327 MS.gene074597:CDS 50.0%
AACCAGAACAGCAGCAAGAG+CGG + chr4.3:24162519-24162538 MS.gene074597:CDS 50.0%
ACCTGCTTTCCCTGATGAGT+GGG - chr4.3:24163551-24163570 None:intergenic 50.0%
ACGGGTCCAACAAGAGTTAG+AGG + chr4.3:24163166-24163185 MS.gene074597:CDS 50.0%
ACTAGAGTGGTGGTCATCTC+AGG + chr4.3:24161807-24161826 MS.gene074597:CDS 50.0%
AGAGACGACTCCAGGAGTAA+TGG - chr4.3:24161645-24161664 None:intergenic 50.0%
ATTTGCACCTGCCCATCTGT+TGG + chr4.3:24164422-24164441 MS.gene074597:intron 50.0%
CAAGAGCTGCCTATGCTCAA+TGG + chr4.3:24161493-24161512 MS.gene074597:CDS 50.0%
CAAGTCCGTGTGAAGGGATT+GGG + chr4.3:24163386-24163405 MS.gene074597:CDS 50.0%
CACAGTGGTAGAATTGCCTG+GGG + chr4.3:24163421-24163440 MS.gene074597:CDS 50.0%
CCACAGTGGTAGAATTGCCT+GGG + chr4.3:24163420-24163439 MS.gene074597:CDS 50.0%
CCACTGAATGGAAAATCCCG+GGG + chr4.3:24164554-24164573 MS.gene074597:CDS 50.0%
CCCCAGAGAACCCTATAAGT+TGG - chr4.3:24162404-24162423 None:intergenic 50.0%
GAAAGAGCCACACCTTCTGA+AGG - chr4.3:24162242-24162261 None:intergenic 50.0%
GCAGGATTCTTTGCACTTGG+TGG - chr4.3:24163518-24163537 None:intergenic 50.0%
GGGAGGAAAATTAGCCACAG+TGG + chr4.3:24163406-24163425 MS.gene074597:CDS 50.0%
GTAATACATGGGATGGGCAC+TGG + chr4.3:24164734-24164753 MS.gene074597:CDS 50.0%
TACCTGCTTTCCCTGATGAG+TGG - chr4.3:24163552-24163571 None:intergenic 50.0%
TAGAATGTGCGTGGGCATCA+GGG + chr4.3:24161233-24161252 MS.gene074597:CDS 50.0%
TATGCGGCATCCATTACTCC+TGG + chr4.3:24161632-24161651 MS.gene074597:CDS 50.0%
TGACCATGCACAAAAGTGGG+TGG + chr4.3:24162487-24162506 MS.gene074597:CDS 50.0%
TGAGTGGGAGAACTAGTTGC+AGG - chr4.3:24163536-24163555 None:intergenic 50.0%
TTCCTCCCAATCCCTTCACA+CGG - chr4.3:24163394-24163413 None:intergenic 50.0%
TTTGCACCTGCCCATCTGTT+GGG + chr4.3:24164423-24164442 MS.gene074597:intron 50.0%
! AATACATGGGATGGGCACTG+GGG + chr4.3:24164736-24164755 MS.gene074597:CDS 50.0%
! AGGGTTCTCTGGGGATGTAT+TGG + chr4.3:24162410-24162429 MS.gene074597:CDS 50.0%
! CGGACTTGCTCTCCAAATTG+TGG - chr4.3:24163374-24163393 None:intergenic 50.0%
! CGTCGATCTAGAATGTGCGT+GGG + chr4.3:24161225-24161244 MS.gene074597:CDS 50.0%
! CTAGTGAGTTGGGAACGGTT+GGG + chr4.3:24163698-24163717 MS.gene074597:intron 50.0%
! GCTTCTAAAAGCGCGTCACA+AGG + chr4.3:24161738-24161757 MS.gene074597:CDS 50.0%
! TCTAGTGAGTTGGGAACGGT+TGG + chr4.3:24163697-24163716 MS.gene074597:intron 50.0%
!! TCTCCACCCACTTTTGTGCA+TGG - chr4.3:24162493-24162512 None:intergenic 50.0%
AATGCGATCAGCGCCACTGA+TGG - chr4.3:24163339-24163358 None:intergenic 55.0%
ATGCGATCAGCGCCACTGAT+GGG - chr4.3:24163338-24163357 None:intergenic 55.0%
CAAGGTCTTCTGCCTCCCTT+TGG - chr4.3:24163109-24163128 None:intergenic 55.0%
CAATGACATTGCGGTCGTGC+AGG + chr4.3:24161581-24161600 MS.gene074597:CDS 55.0%
CCCAGGCAATTCTACCACTG+TGG - chr4.3:24163423-24163442 None:intergenic 55.0%
CTAGAATGTGCGTGGGCATC+AGG + chr4.3:24161232-24161251 MS.gene074597:CDS 55.0%
CTTGGCAGGCAGATGCATTC+CGG - chr4.3:24161898-24161917 None:intergenic 55.0%
GAGTGAGGGAGACGGATAGA+CGG - chr4.3:24163060-24163079 None:intergenic 55.0%
GCAAGTCCGTGTGAAGGGAT+TGG + chr4.3:24163385-24163404 MS.gene074597:CDS 55.0%
GCCACAGTGGTAGAATTGCC+TGG + chr4.3:24163419-24163438 MS.gene074597:CDS 55.0%
GCCACTGATGGGAGAACCAA+CGG - chr4.3:24163327-24163346 None:intergenic 55.0%
GGAGAGCAAGTCCGTGTGAA+GGG + chr4.3:24163380-24163399 MS.gene074597:CDS 55.0%
GGATCTACGAGGTATGCGAC+TGG + chr4.3:24164649-24164668 MS.gene074597:CDS 55.0%
GTATGTTGCTCCAGAGCTGC+TGG - chr4.3:24161301-24161320 None:intergenic 55.0%
TCAAGACCCAACAGATGGGC+AGG - chr4.3:24164432-24164451 None:intergenic 55.0%
TCCCACTCATCAGGGAAAGC+AGG + chr4.3:24163547-24163566 MS.gene074597:CDS 55.0%
TCTTGGCTATCCCCGAGGAT+TGG - chr4.3:24162876-24162895 None:intergenic 55.0%
TGAGGCACGGCATGATGTGT+TGG - chr4.3:24162842-24162861 None:intergenic 55.0%
TGGAGAGCAAGTCCGTGTGA+AGG + chr4.3:24163379-24163398 MS.gene074597:CDS 55.0%
TGGGCATCAGGGCTTCGTAT+AGG + chr4.3:24161244-24161263 MS.gene074597:CDS 55.0%
! CCCCGGGATTTTCCATTCAG+TGG - chr4.3:24164557-24164576 None:intergenic 55.0%
! GCGTCGATCTAGAATGTGCG+TGG + chr4.3:24161224-24161243 MS.gene074597:CDS 55.0%
! GTTCTGAATGCCAGCAGCTC+TGG + chr4.3:24161288-24161307 MS.gene074597:CDS 55.0%
!! TTCAAACTCTGAAGCGGCCG+AGG + chr4.3:24161371-24161390 MS.gene074597:CDS 55.0%
ACAGCTCTTGGCTATCCCCG+AGG - chr4.3:24162881-24162900 None:intergenic 60.0%
AGGGGTTGAGAGGGAGAGAC+CGG + chr4.3:24164069-24164088 MS.gene074597:intron 60.0%
CTCCGCTCTTGCTGCTGTTC+TGG - chr4.3:24162524-24162543 None:intergenic 60.0%
CTGATGGGAGAACCAACGGC+AGG - chr4.3:24163323-24163342 None:intergenic 60.0%
GAACAGCAGCAAGAGCGGAG+AGG + chr4.3:24162524-24162543 MS.gene074597:CDS 60.0%
GTCCGTGTGAAGGGATTGGG+AGG + chr4.3:24163389-24163408 MS.gene074597:CDS 60.0%
!! GCCGTTGGTTCTCCCATCAG+TGG + chr4.3:24163323-24163342 MS.gene074597:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 24161033 24164865 24161033 ID=MS.gene074597
chr4.3 mRNA 24161033 24164865 24161033 ID=MS.gene074597.t1;Parent=MS.gene074597
chr4.3 exon 24161033 24161937 24161033 ID=MS.gene074597.t1.exon1;Parent=MS.gene074597.t1
chr4.3 CDS 24161033 24161937 24161033 ID=cds.MS.gene074597.t1;Parent=MS.gene074597.t1
chr4.3 exon 24162151 24162646 24162151 ID=MS.gene074597.t1.exon2;Parent=MS.gene074597.t1
chr4.3 CDS 24162151 24162646 24162151 ID=cds.MS.gene074597.t1;Parent=MS.gene074597.t1
chr4.3 exon 24163104 24163568 24163104 ID=MS.gene074597.t1.exon3;Parent=MS.gene074597.t1
chr4.3 CDS 24163104 24163568 24163104 ID=cds.MS.gene074597.t1;Parent=MS.gene074597.t1
chr4.3 exon 24164551 24164865 24164551 ID=MS.gene074597.t1.exon4;Parent=MS.gene074597.t1
chr4.3 CDS 24164551 24164865 24164551 ID=cds.MS.gene074597.t1;Parent=MS.gene074597.t1
Gene Sequence

>MS.gene074597

ATGGGCTTGGAGCGCAGGATAGAATTTTGCATAGATTGCAATCTTTTGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAACGAAAAAGGAACATAGAAATCCTGGACTCTTTATTGAAGGAAGTATCGTCTCAAATTTTTCGGGCTGGGGGTATTGACAGACCATTTATTACTAAGCGTCGATCTAGAATGTGCGTGGGCATCAGGGCTTCGTATAGGTATTTGCTTCCAGAAGGTATAGTTCTGAATGCCAGCAGCTCTGGAGCAACATACTTTATGGAACCGAAAGAAGCAATAGATTTGAACAACATGGAAGTTAGGCTTTCAAACTCTGAAGCGGCCGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAAATATTTGTTGGATAAAATTCTTGAGATTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGATATGTCCAATTTTCAGTTTAGGTACTATTGGAGGTTGCAATTCTGTTGAAGAGGACAATGACATTGCGGTCGTGCAGGATGACGATTTAACAGTAAATATTGAGGGTATGCGGCATCCATTACTCCTGGAGTCGTCTCTAGAAAACATTTCAGATAATGTCACACTAAGGTCTGGAAATTCTTCTGAGTTGGGTAATGGAAATGGAACAATGGCTTCTAAAAGCGCGTCACAAGGCATAACAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGATCTGGAACTAGAGTGGTGGTCATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCAATGAAAACGTTGGGCCTGGCATCACTTATGTCAAAAGCCGGAATGCATCTGCCTGCCAAGAAAAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCAGATATTGGAGATCACCAGGTAATATCTGAACTTTTTTATGCATGATGAAGATTTTTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATCATGTGGCTGTTTCATTTGTGTCTGATCTTTTTCTCCCTTCAAAATTGCAGTCCCTTGAACAAAATCTCTCAACTTTTAGTGGGCACATCTCACGTATCCGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATTGGTAGTGGAACTGATCCTTCAGAAGGTGTGGCTCTTTCTGCCAGTATCTTACAATATCTGCGGGAACATGTTAACTTGGCTGTTGTGACCACTCATTATGCTGATCTAAGTACTTTGAAGGAAAGGGATACATGTTTTGAAAATGCCGCAATGGAATTTTCACTGGAAACCTTGCAACCAACTTATAGGGTTCTCTGGGGATGTATTGGTGATTCAAATGCATTAAGCATAGCGCAATCTATTGGCTTTGATAAAAATATAATTGACCATGCACAAAAGTGGGTGGAGAAATTAAAACCAGAACAGCAGCAAGAGCGGAGAGGAATGCTCTATCAGTCATTACAGGAGGAAAAAAATCGGTTAAAGGCTCAAGCTGAAAAGGCTGCTTCCATTCATGCAGAAATTATGAACGTGTACTCTGAGGTACAATCTAGCTGTTCAGTTAGAAAGAGATAATGTGTTTCTTTATTATAGTTTCTTCTCCTTGGTCCATATAGTATGATAATCATTATTGTCCCTTTTAAAGTTTATCTGAAATTTGCATCGTTCATAAGTAATGACTCAGTAAATTGACCACAAAATCAAAGTGTGATGGATGTTGTGAAGGTCTTTTGACCAACACATCATGCCGTGCCTCATTAATAGATATCCAATCCTCGGGGATAGCCAAGAGCTGTTAATTTAAATATGTAGCGCCTCTTCCATCCAAAATTTTCATAATGCCGTTATTTCTGGGGAAAATGGTTCAGCGTAAGAATTGTAGAGCATTTGCCTGCAGTCTGTAATTGAATGTCATCATATTTGCTGTTGCTCATTGCTTTGCACTTTCTTGGCCGTCTATCCGTCTCCCTCACTCTTTTCCTTTTCTTCTTTTGCAAAGATCCAAAGGGAGGCAGAAGACCTTGATAGACGTGAAACGATGCTTATGGCAAAGGAAGCTCAACGGGTCCAACAAGAGTTAGAGGATGCAAAATCTCAAATGGAAATTGTAATACAGAAATTCGAAAAGCAACTAAAAGATTTGGGACGCAACCAACTCAATTCAATAATTAAAGAATCTGAAACTGCAATTGCCTCCATTGTAAAAGCTCATACTCCTGCCGTTGGTTCTCCCATCAGTGGCGCTGATCGCATTACATCATATACTCCACAATTTGGAGAGCAAGTCCGTGTGAAGGGATTGGGAGGAAAATTAGCCACAGTGGTAGAATTGCCTGGGGATGATGAAACAATCTTGGTACAGTATGGTAAAGTGAAAGTACGTGTGAAGAAAAATCGCATCAGAGCTATTCCACCAAGTGCAAAGAATCCTGCAACTAGTTCTCCCACTCATCAGGGAAAGCAGGTATGTACAAAGAAATCTTTGCTGTCATATAAATAATCTAATTCAATTAATATAGTTAACCTGTCAAGGAAGAAAACAGAGTGGTATATGTTTCCATTAAGAAAGTTATTTTGCAAGCAGTAATCTTATCTAGTGAGTTGGGAACGGTTGGGATAAGACAGTTAGAGAGGAAGGTTACTTCCTCTAGTTTCAAATATAATAAGAAGAAAAAAAGTAGTTCGCGCTAGTTAAGAATACTATAAAATCATATTTAATTTTTTGATGTAATAAAAAATATATTGTATTATCTAAAATATTCTTCGTGGAAACTTGTTTCATATAAGTAAAAGAAGTTATTGGAAAATGAAATCCAAATTTTATTGAAAGGTATTTTATATTTAATCTGGCATTTTTTCTTTTGAAGTAATGGTAAAATTAATTTAGAATTGATATATTTTGGATCCCCAAACATAGACTTTTTTGGATATATCCAATAGCGGAGGGAATATGTAAATAGCTAGAGGGGTTGAGAGGGAGAGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTAGCTTTCTCCTGTTTTTCTGTAATAAATACCAGGTTCCTAACATCATATTTGGAAATTGGAACTTCAGATCATCCTATAATATAGGCACATTGAATTGAATTTTCTATAAAATTAATCTGTCTCCTTTTTAAAATTGGCTTCTTAACCTAATTTGATTTAGACAAAATTTGCACCTGCCCATCTGTTGGGTCTTGAATGTTTGTAGAATTTTCTGTACACTAACGCTTTGAAGGATGACAGTAATTGATCTATATCAAACTGCTGAGTTTGAACACTGTTGATTTACTATTGTAGAAACCACTGAATGGAAAATCCCGGGGTAACTTAGAGATGAACAGCAGCAATGGTGATATTTATTATGGTCCAGCGGTGCAAACATCTAAGAATACTGTGGATCTACGAGGTATGCGACTGGAAGAAGCTGCGATCCATCTTGAGATGACAATCAGCGCAAGTCAGCCATATTCAGTTCTCTTTGTAATACATGGGATGGGCACTGGGGCTGTTAAAGATCGTGCACTTGCTATTCTGCAAAAGCATCCTCGTGTCACTCATTTTGAACCAGAAAGTCCAATGAATTATGGATGTACTGTTGCACGTGTTAAGTGA
Protein sequence

>MS.gene074597.t1

MGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFRAGGIDRPFITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASEIANSESEIKYLLDKILEIDLAFARAAYAQWMNGICPIFSLGTIGGCNSVEEDNDIAVVQDDDLTVNIEGMRHPLLLESSLENISDNVTLRSGNSSELGNGNGTMASKSASQGITDFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPCGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVNLAVVTTHYADLSTLKERDTCFENAAMEFSLETLQPTYRVLWGCIGDSNALSIAQSIGFDKNIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSEIQREAEDLDRRETMLMAKEAQRVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKESETAIASIVKAHTPAVGSPISGADRITSYTPQFGEQVRVKGLGGKLATVVELPGDDETILVQYGKVKVRVKKNRIRAIPPSAKNPATSSPTHQGKQKPLNGKSRGNLEMNSSNGDIYYGPAVQTSKNTVDLRGMRLEEAAIHLEMTISASQPYSVLFVIHGMGTGAVKDRALAILQKHPRVTHFEPESPMNYGCTVARVK