Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22292.t1 | KEH27405.1 | 87.2 | 632 | 30 | 1 | 7 | 587 | 1 | 632 | 1.30E-285 | 991.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22292.t1 | O22437 | 82.0 | 638 | 52 | 6 | 7 | 587 | 1 | 632 | 1.9e-266 | 919.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22292.t1 | G7K9A4 | 87.2 | 632 | 30 | 1 | 7 | 587 | 1 | 632 | 9.2e-286 | 991.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene22292 | 0.800687 | 1.28E-48 | -1.69E-46 |
| MS.gene049351 | MS.gene22292 | 0.880549 | 5.01E-70 | -1.69E-46 |
| MS.gene049356 | MS.gene22292 | 0.848383 | 6.35E-60 | -1.69E-46 |
| MS.gene049369 | MS.gene22292 | 0.84367 | 1.21E-58 | -1.69E-46 |
| MS.gene049389 | MS.gene22292 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene22292 | 0.857165 | 1.97E-62 | -1.69E-46 |
| MS.gene049491 | MS.gene22292 | 0.848869 | 4.66E-60 | -1.69E-46 |
| MS.gene049614 | MS.gene22292 | 0.82004 | 8.46E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene22292 | 0.837001 | 6.72E-57 | -1.69E-46 |
| MS.gene049662 | MS.gene22292 | 0.832435 | 9.47E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene22292 | 0.823294 | 1.50E-53 | -1.69E-46 |
| MS.gene049760 | MS.gene22292 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene049828 | MS.gene22292 | 0.84064 | 7.70E-58 | -1.69E-46 |
| MS.gene049907 | MS.gene22292 | 0.86243 | 5.10E-64 | -1.69E-46 |
| MS.gene050076 | MS.gene22292 | 0.846205 | 2.51E-59 | -1.69E-46 |
| MS.gene050099 | MS.gene22292 | 0.817284 | 3.57E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene22292 | 0.820229 | 7.66E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene22292 | 0.900932 | 4.46E-78 | -1.69E-46 |
| MS.gene050432 | MS.gene22292 | 0.868107 | 8.35E-66 | -1.69E-46 |
| MS.gene050520 | MS.gene22292 | 0.841127 | 5.74E-58 | -1.69E-46 |
| MS.gene05053 | MS.gene22292 | 0.800698 | 1.28E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene22292 | 0.840984 | 6.26E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene22292 | 0.879912 | 8.46E-70 | -1.69E-46 |
| MS.gene050770 | MS.gene22292 | 0.881936 | 1.59E-70 | -1.69E-46 |
| MS.gene050772 | MS.gene22292 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene22292 | 0.852001 | 6.15E-61 | -1.69E-46 |
| MS.gene050812 | MS.gene22292 | 0.836392 | 9.62E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene22292 | 0.869366 | 3.27E-66 | -1.69E-46 |
| MS.gene05105 | MS.gene22292 | 0.855504 | 6.03E-62 | -1.69E-46 |
| MS.gene051228 | MS.gene22292 | 0.811918 | 5.50E-51 | -1.69E-46 |
| MS.gene051255 | MS.gene22292 | 0.852708 | 3.87E-61 | -1.69E-46 |
| MS.gene051360 | MS.gene22292 | 0.848125 | 7.48E-60 | -1.69E-46 |
| MS.gene051387 | MS.gene22292 | 0.869946 | 2.11E-66 | -1.69E-46 |
| MS.gene051471 | MS.gene22292 | 0.833256 | 5.92E-56 | -1.69E-46 |
| MS.gene051666 | MS.gene22292 | 0.807798 | 4.24E-50 | -1.69E-46 |
| MS.gene051877 | MS.gene22292 | 0.833011 | 6.81E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene22292 | 0.854378 | 1.28E-61 | -1.69E-46 |
| MS.gene052188 | MS.gene22292 | 0.87852 | 2.63E-69 | -1.69E-46 |
| MS.gene052207 | MS.gene22292 | 0.821826 | 3.28E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene22292 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene22292 | 0.823612 | 1.26E-53 | -1.69E-46 |
| MS.gene052290 | MS.gene22292 | 0.847612 | 1.04E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene22292 | 0.860006 | 2.79E-63 | -1.69E-46 |
| MS.gene052322 | MS.gene22292 | 0.827013 | 1.98E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene22292 | 0.90201 | 1.50E-78 | -1.69E-46 |
| MS.gene052340 | MS.gene22292 | 0.81474 | 1.32E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene22292 | 0.821638 | 3.63E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene22292 | 0.840135 | 1.04E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene22292 | 0.825521 | 4.48E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene22292 | 0.856843 | 2.45E-62 | -1.69E-46 |
| MS.gene053009 | MS.gene22292 | 0.844364 | 7.92E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene22292 | 0.823997 | 1.02E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene22292 | 0.81583 | 7.56E-52 | -1.69E-46 |
| MS.gene053107 | MS.gene22292 | 0.811933 | 5.46E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene22292 | 0.841657 | 4.16E-58 | -1.69E-46 |
| MS.gene053209 | MS.gene22292 | 0.862986 | 3.43E-64 | -1.69E-46 |
| MS.gene053322 | MS.gene22292 | 0.859359 | 4.37E-63 | -1.69E-46 |
| MS.gene053632 | MS.gene22292 | 0.807945 | 3.94E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene22292 | 0.801548 | 8.55E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene22292 | 0.860763 | 1.65E-63 | -1.69E-46 |
| MS.gene053836 | MS.gene22292 | 0.827675 | 1.37E-54 | -1.69E-46 |
| MS.gene054010 | MS.gene22292 | 0.805664 | 1.20E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene22292 | 0.812767 | 3.59E-51 | -1.69E-46 |
| MS.gene054012 | MS.gene22292 | 0.801918 | 7.18E-49 | -1.69E-46 |
| MS.gene054013 | MS.gene22292 | 0.800883 | 1.17E-48 | -1.69E-46 |
| MS.gene054123 | MS.gene22292 | 0.895887 | 6.25E-76 | -1.69E-46 |
| MS.gene054376 | MS.gene22292 | 0.882661 | 8.64E-71 | -1.69E-46 |
| MS.gene05455 | MS.gene22292 | 0.850277 | 1.88E-60 | -1.69E-46 |
| MS.gene054802 | MS.gene22292 | 0.870392 | 1.51E-66 | -1.69E-46 |
| MS.gene054803 | MS.gene22292 | 0.874518 | 6.35E-68 | -1.69E-46 |
| MS.gene054804 | MS.gene22292 | 0.87382 | 1.09E-67 | -1.69E-46 |
| MS.gene05505 | MS.gene22292 | 0.8428 | 2.07E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene22292 | 0.831845 | 1.33E-55 | -1.69E-46 |
| MS.gene055254 | MS.gene22292 | 0.836321 | 1.00E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene22292 | 0.877447 | 6.24E-69 | -1.69E-46 |
| MS.gene055390 | MS.gene22292 | 0.8871 | 1.92E-72 | -1.69E-46 |
| MS.gene055397 | MS.gene22292 | 0.850458 | 1.68E-60 | -1.69E-46 |
| MS.gene055412 | MS.gene22292 | 0.856383 | 3.34E-62 | -1.69E-46 |
| MS.gene055422 | MS.gene22292 | 0.867437 | 1.37E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene22292 | 0.844159 | 8.98E-59 | -1.69E-46 |
| MS.gene055499 | MS.gene22292 | 0.865479 | 5.73E-65 | -1.69E-46 |
| MS.gene055604 | MS.gene22292 | 0.832315 | 1.01E-55 | -1.69E-46 |
| MS.gene055633 | MS.gene22292 | 0.839733 | 1.33E-57 | -1.69E-46 |
| MS.gene055647 | MS.gene22292 | 0.837602 | 4.72E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene22292 | 0.803008 | 4.28E-49 | -1.69E-46 |
| MS.gene055802 | MS.gene22292 | 0.841307 | 5.14E-58 | -1.69E-46 |
| MS.gene05592 | MS.gene22292 | 0.842618 | 2.32E-58 | -1.69E-46 |
| MS.gene055930 | MS.gene22292 | 0.819668 | 1.03E-52 | -1.69E-46 |
| MS.gene05602 | MS.gene22292 | 0.868629 | 5.67E-66 | -1.69E-46 |
| MS.gene056191 | MS.gene22292 | 0.817106 | 3.92E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene22292 | 0.880066 | 7.45E-70 | -1.69E-46 |
| MS.gene056410 | MS.gene22292 | 0.876051 | 1.90E-68 | -1.69E-46 |
| MS.gene056449 | MS.gene22292 | 0.821505 | 3.90E-53 | -1.69E-46 |
| MS.gene056452 | MS.gene22292 | 0.813264 | 2.79E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene22292 | 0.81512 | 1.09E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene22292 | 0.855311 | 6.87E-62 | -1.69E-46 |
| MS.gene056611 | MS.gene22292 | 0.810861 | 9.34E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene22292 | 0.812154 | 4.89E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene22292 | 0.829568 | 4.79E-55 | -1.69E-46 |
| MS.gene056719 | MS.gene22292 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene22292 | 0.829027 | 6.48E-55 | -1.69E-46 |
| MS.gene056897 | MS.gene22292 | 0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene056902 | MS.gene22292 | 0.813074 | 3.08E-51 | -1.69E-46 |
| MS.gene056931 | MS.gene22292 | 0.845511 | 3.88E-59 | -1.69E-46 |
| MS.gene056933 | MS.gene22292 | 0.845431 | 4.08E-59 | -1.69E-46 |
| MS.gene056935 | MS.gene22292 | 0.834907 | 2.28E-56 | -1.69E-46 |
| MS.gene056942 | MS.gene22292 | 0.815873 | 7.39E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene22292 | 0.851231 | 1.02E-60 | -1.69E-46 |
| MS.gene05702 | MS.gene22292 | 0.831988 | 1.22E-55 | -1.69E-46 |
| MS.gene057123 | MS.gene22292 | 0.825406 | 4.77E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene22292 | 0.804324 | 2.28E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene22292 | 0.850774 | 1.37E-60 | -1.69E-46 |
| MS.gene057146 | MS.gene22292 | 0.853122 | 2.94E-61 | -1.69E-46 |
| MS.gene057295 | MS.gene22292 | 0.819529 | 1.11E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene22292 | 0.81238 | 4.36E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene22292 | 0.828648 | 8.00E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene22292 | 0.82807 | 1.10E-54 | -1.69E-46 |
| MS.gene057448 | MS.gene22292 | 0.829927 | 3.91E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene22292 | 0.827251 | 1.73E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene22292 | 0.841748 | 3.94E-58 | -1.69E-46 |
| MS.gene057537 | MS.gene22292 | 0.803212 | 3.88E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene22292 | 0.821414 | 4.09E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene22292 | 0.828218 | 1.02E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene22292 | 0.84184 | 3.72E-58 | -1.69E-46 |
| MS.gene058019 | MS.gene22292 | 0.827448 | 1.56E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene22292 | 0.883129 | 5.83E-71 | -1.69E-46 |
| MS.gene05811 | MS.gene22292 | 0.839571 | 1.46E-57 | -1.69E-46 |
| MS.gene058120 | MS.gene22292 | 0.801559 | 8.51E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene22292 | 0.879542 | 1.14E-69 | -1.69E-46 |
| MS.gene058323 | MS.gene22292 | 0.827827 | 1.26E-54 | -1.69E-46 |
| MS.gene058365 | MS.gene22292 | 0.86506 | 7.76E-65 | -1.69E-46 |
| MS.gene05842 | MS.gene22292 | 0.806107 | 9.66E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene22292 | 0.912443 | 1.94E-83 | -1.69E-46 |
| MS.gene058787 | MS.gene22292 | 0.838479 | 2.81E-57 | -1.69E-46 |
| MS.gene05886 | MS.gene22292 | 0.805639 | 1.21E-49 | -1.69E-46 |
| MS.gene058903 | MS.gene22292 | 0.813094 | 3.05E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene22292 | 0.811055 | 8.48E-51 | -1.69E-46 |
| MS.gene058948 | MS.gene22292 | 0.837255 | 5.79E-57 | -1.69E-46 |
| MS.gene058949 | MS.gene22292 | 0.814245 | 1.70E-51 | -1.69E-46 |
| MS.gene058993 | MS.gene22292 | 0.861995 | 6.93E-64 | -1.69E-46 |
| MS.gene05907 | MS.gene22292 | 0.865817 | 4.48E-65 | -1.69E-46 |
| MS.gene059342 | MS.gene22292 | 0.811027 | 8.60E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene22292 | 0.80838 | 3.19E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene22292 | 0.821118 | 4.79E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene22292 | 0.842851 | 2.01E-58 | -1.69E-46 |
| MS.gene059597 | MS.gene22292 | 0.861231 | 1.19E-63 | -1.69E-46 |
| MS.gene05959 | MS.gene22292 | 0.868601 | 5.78E-66 | -1.69E-46 |
| MS.gene059676 | MS.gene22292 | 0.896374 | 3.92E-76 | -1.69E-46 |
| MS.gene059688 | MS.gene22292 | 0.887433 | 1.43E-72 | -1.69E-46 |
| MS.gene059692 | MS.gene22292 | 0.882762 | 7.93E-71 | -1.69E-46 |
| MS.gene059695 | MS.gene22292 | 0.88551 | 7.64E-72 | -1.69E-46 |
| MS.gene059708 | MS.gene22292 | 0.83888 | 2.21E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene22292 | 0.890942 | 6.24E-74 | -1.69E-46 |
| MS.gene05984 | MS.gene22292 | 0.811277 | 7.59E-51 | -1.69E-46 |
| MS.gene05986 | MS.gene22292 | 0.862538 | 4.72E-64 | -1.69E-46 |
| MS.gene059894 | MS.gene22292 | 0.817688 | 2.90E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene22292 | 0.874369 | 7.13E-68 | -1.69E-46 |
| MS.gene059974 | MS.gene22292 | 0.844654 | 6.61E-59 | -1.69E-46 |
| MS.gene060005 | MS.gene22292 | 0.848928 | 4.48E-60 | -1.69E-46 |
| MS.gene060193 | MS.gene22292 | 0.809995 | 1.44E-50 | -1.69E-46 |
| MS.gene060356 | MS.gene22292 | 0.85716 | 1.97E-62 | -1.69E-46 |
| MS.gene06037 | MS.gene22292 | 0.848344 | 6.51E-60 | -1.69E-46 |
| MS.gene060407 | MS.gene22292 | 0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene060559 | MS.gene22292 | 0.84659 | 1.97E-59 | -1.69E-46 |
| MS.gene060569 | MS.gene22292 | 0.813139 | 2.98E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene22292 | 0.861137 | 1.27E-63 | -1.69E-46 |
| MS.gene060818 | MS.gene22292 | 0.83551 | 1.61E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene22292 | 0.857408 | 1.67E-62 | -1.69E-46 |
| MS.gene06090 | MS.gene22292 | 0.84288 | 1.97E-58 | -1.69E-46 |
| MS.gene061041 | MS.gene22292 | 0.835013 | 2.15E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene22292 | 0.827623 | 1.41E-54 | -1.69E-46 |
| MS.gene061051 | MS.gene22292 | -0.852902 | 3.40E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene22292 | 0.900256 | 8.79E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22292.t1 | MTR_5g009070 | 98.163 | 381 | 7 | 0 | 7 | 387 | 1 | 381 | 0.0 | 776 |
| MS.gene22292.t1 | MTR_5g009070 | 100.000 | 183 | 0 | 0 | 405 | 587 | 450 | 632 | 3.62e-120 | 373 |
| MS.gene22292.t1 | MTR_5g009070 | 98.163 | 381 | 7 | 0 | 7 | 387 | 1 | 381 | 0.0 | 773 |
| MS.gene22292.t1 | MTR_5g009070 | 100.000 | 183 | 0 | 0 | 405 | 587 | 450 | 632 | 5.34e-121 | 372 |
| MS.gene22292.t1 | MTR_4g087895 | 39.088 | 307 | 185 | 1 | 78 | 384 | 81 | 385 | 6.43e-62 | 211 |
| MS.gene22292.t1 | MTR_2g015390 | 39.414 | 307 | 184 | 1 | 78 | 384 | 83 | 387 | 3.14e-57 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22292.t1 | AT1G08520 | 78.161 | 348 | 75 | 1 | 40 | 387 | 43 | 389 | 0.0 | 561 |
| MS.gene22292.t1 | AT1G08520 | 95.722 | 187 | 8 | 0 | 401 | 587 | 453 | 639 | 2.15e-117 | 366 |
| MS.gene22292.t1 | AT4G18480 | 36.842 | 361 | 218 | 3 | 26 | 384 | 37 | 389 | 5.57e-62 | 211 |
| MS.gene22292.t1 | AT5G45930 | 37.677 | 353 | 213 | 4 | 36 | 384 | 34 | 383 | 2.75e-61 | 209 |
Find 154 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTCTTGCTGCTGTTAT+TGG | 0.145624 | 5.3:-3157866 | MS.gene22292:CDS |
| TGGAATTGCGACAGAATTTC+AGG | 0.241802 | 5.3:-3155335 | MS.gene22292:CDS |
| CTCCTTCAGTCAATACATTA+AGG | 0.244704 | 5.3:+3156142 | None:intergenic |
| TGTTGATGAAATTAATCTTT+TGG | 0.288162 | 5.3:-3156187 | MS.gene22292:CDS |
| GATAAGGTGCAGCAGCTCTA+AGG | 0.296257 | 5.3:+3148389 | None:intergenic |
| AGAACCCTCGTCAGGGTTAT+AGG | 0.296595 | 5.3:+3156056 | None:intergenic |
| CTGTGGCGAAGTATTTAAAA+TGG | 0.300420 | 5.3:-3155308 | MS.gene22292:CDS |
| AACCAGTGACCTTACTCTTC+TGG | 0.303250 | 5.3:+3157119 | None:intergenic |
| ATGAAAATAGAGAGTGGAAT+TGG | 0.318877 | 5.3:+3158044 | None:intergenic |
| CTTCGCGCTCAATCTGAAAA+TGG | 0.319522 | 5.3:-3157953 | MS.gene22292:CDS |
| CACGGCGCCTCTGTGCTTGT+TGG | 0.321269 | 5.3:+3148922 | None:intergenic |
| AAGCTCGATGCTAGTACTTA+TGG | 0.326021 | 5.3:-3157899 | MS.gene22292:CDS |
| GAAGCATTGGCTTGATATAT+CGG | 0.333120 | 5.3:+3148853 | None:intergenic |
| TGTCAAATCTCCCTTTGTTC+AGG | 0.336864 | 5.3:-3156457 | MS.gene22292:intron |
| TGCTAAGTGTTTAGCTGCTC+TGG | 0.350030 | 5.3:-3150461 | MS.gene22292:CDS |
| TCAACTGCTAATCTCTTTAC+AGG | 0.364991 | 5.3:+3148418 | None:intergenic |
| GAACCTTCTACTACTTCAAT+AGG | 0.368958 | 5.3:+3157167 | None:intergenic |
| AGTAAATATTGTTGAAAGAG+AGG | 0.376476 | 5.3:-3156121 | MS.gene22292:CDS |
| AGGTGCAGCACTTAAGCTTC+TGG | 0.376539 | 5.3:-3147142 | MS.gene22292:CDS |
| ACGGCGCCTCTGTGCTTGTT+GGG | 0.379485 | 5.3:+3148923 | None:intergenic |
| TTTATGCTTCAGATTCCTCT+TGG | 0.379940 | 5.3:-3156321 | MS.gene22292:intron |
| CCGCCTATTGAAGTAGTAGA+AGG | 0.388769 | 5.3:-3157170 | MS.gene22292:CDS |
| AAAGAGAGGGAATCAGCTTT+AGG | 0.389062 | 5.3:-3156107 | MS.gene22292:CDS |
| ATTGGAGGGATTGCTATATC+AGG | 0.389470 | 5.3:-3157245 | MS.gene22292:CDS |
| ACTCGACATGTTTGATGAAA+TGG | 0.393357 | 5.3:+3158001 | None:intergenic |
| CAGAGGCGCCGTGGGAAGGC+TGG | 0.396114 | 5.3:-3148912 | MS.gene22292:CDS |
| TGGAGTTGAAGATTAGTGTA+AGG | 0.396756 | 5.3:+3158064 | None:intergenic |
| TATCTCAAGGATGTTACTAT+TGG | 0.405395 | 5.3:-3154340 | MS.gene22292:CDS |
| AGCTTCGGAACGCTGCGTTT+TGG | 0.406847 | 5.3:+3157974 | None:intergenic |
| TCAGATTGAGCGCGAAGCTT+CGG | 0.408481 | 5.3:+3157959 | None:intergenic |
| AGCAATCAGAAGGGGCCTGC+AGG | 0.411285 | 5.3:+3156080 | None:intergenic |
| GCATCAAAGATAAATTCTTC+AGG | 0.419594 | 5.3:+3148984 | None:intergenic |
| TGGGCACGAGGGATCTGAAT+TGG | 0.428468 | 5.3:+3157139 | None:intergenic |
| ACCAGTGACCTTACTCTTCT+GGG | 0.432028 | 5.3:+3157120 | None:intergenic |
| ATAGCAATCCCTCCAATCCT+AGG | 0.437606 | 5.3:+3157251 | None:intergenic |
| AGGAACTGCTAAAACGATAA+TGG | 0.441397 | 5.3:-3157216 | MS.gene22292:CDS |
| GAAAGGCTTCCGTGTGGTGG+AGG | 0.449203 | 5.3:-3146508 | MS.gene22292:CDS |
| AGGAGTACCTTTGGAAGCAT+TGG | 0.456193 | 5.3:+3148840 | None:intergenic |
| GTCACAGAGGACAGACTCAT+TGG | 0.461495 | 5.3:-3156297 | MS.gene22292:CDS |
| AAGTTATACAAGCAGGGATC+AGG | 0.461637 | 5.3:-3147115 | MS.gene22292:intron |
| TGCTCTGGAGGGACGTGAAA+AGG | 0.461890 | 5.3:-3150446 | MS.gene22292:CDS |
| CTCCTTAATGTATTGACTGA+AGG | 0.462232 | 5.3:-3156144 | MS.gene22292:CDS |
| TTATGAAATGCAGATCATCT+TGG | 0.465025 | 5.3:-3154371 | MS.gene22292:intron |
| GTGGAAGCATGGCATTGAAC+AGG | 0.466542 | 5.3:-3147179 | MS.gene22292:CDS |
| GTTCAATGCCATGCTTCCAC+TGG | 0.469040 | 5.3:+3147182 | None:intergenic |
| GAATTTATCTTTGATGCTGA+AGG | 0.474323 | 5.3:-3148978 | MS.gene22292:CDS |
| ATGCAAACAACATACGGAAT+GGG | 0.475833 | 5.3:-3158106 | MS.gene22292:CDS |
| GCAATCAGAAGGGGCCTGCA+GGG | 0.479613 | 5.3:+3156081 | None:intergenic |
| AGAATCATATTCCACGCGTT+GGG | 0.480306 | 5.3:+3156503 | None:intergenic |
| GCCATTGCAATCGATCTAGA+AGG | 0.482231 | 5.3:+3146544 | None:intergenic |
| GGAGGGTCACCCCTTGCCCA+TGG | 0.485712 | 5.3:-3146490 | MS.gene22292:CDS |
| TTGCCCTTCCAGCCTTCCCA+CGG | 0.486145 | 5.3:+3148904 | None:intergenic |
| AAGAGAATGGCACGTAAAGC+AGG | 0.487735 | 5.3:-3148295 | MS.gene22292:CDS |
| TCACGAACAGAACCCTCGTC+AGG | 0.489907 | 5.3:+3156048 | None:intergenic |
| CATGCAAACAACATACGGAA+TGG | 0.490887 | 5.3:-3158107 | MS.gene22292:CDS |
| GCTACTGACCCTAGGATTGG+AGG | 0.491446 | 5.3:-3157260 | MS.gene22292:CDS |
| TCAGCTTTAGGCACCCCTGC+AGG | 0.492155 | 5.3:-3156095 | MS.gene22292:CDS |
| AACAGGATGCAGAATGCAAA+AGG | 0.496428 | 5.3:-3147162 | MS.gene22292:CDS |
| CTCGTAAAGCCTCAAGTACC+AGG | 0.499131 | 5.3:+3154299 | None:intergenic |
| GCGCCGTGGGAAGGCTGGAA+GGG | 0.499835 | 5.3:-3148907 | MS.gene22292:CDS |
| TGTTCTCCTCCTCAGAAGTA+AGG | 0.501753 | 5.3:+3157921 | None:intergenic |
| GGCTTTACGAGGTGGTGTCC+AGG | 0.504444 | 5.3:-3154287 | MS.gene22292:intron |
| CAGAATCATATTCCACGCGT+TGG | 0.505702 | 5.3:+3156502 | None:intergenic |
| GGCGCCGTGGGAAGGCTGGA+AGG | 0.507433 | 5.3:-3148908 | MS.gene22292:CDS |
| CTGAATAGTACCTGAACAAA+GGG | 0.509664 | 5.3:+3156447 | None:intergenic |
| GTAAATATTGTTGAAAGAGA+GGG | 0.512847 | 5.3:-3156120 | MS.gene22292:CDS |
| TACTTGGGGCTACTGACCCT+AGG | 0.515179 | 5.3:-3157268 | MS.gene22292:CDS |
| GGAGTTGAAGATTAGTGTAA+GGG | 0.517742 | 5.3:+3158065 | None:intergenic |
| TGACATGAGGGCAAAGAGAA+TGG | 0.518308 | 5.3:-3148308 | MS.gene22292:CDS |
| TGGCAGAAAGTTATACAAGC+AGG | 0.519429 | 5.3:-3147122 | MS.gene22292:CDS |
| ATAAGGTGCAGCAGCTCTAA+GGG | 0.521352 | 5.3:+3148390 | None:intergenic |
| CGAGGGATCTGAATTGGCTA+TGG | 0.524852 | 5.3:+3157145 | None:intergenic |
| TGAGCTTCAGCAAGTAAGCC+TGG | 0.525679 | 5.3:+3156225 | None:intergenic |
| AACAAGCACAGAGGCGCCGT+GGG | 0.528819 | 5.3:-3148920 | MS.gene22292:CDS |
| AGCACAGAGGCGCCGTGGGA+AGG | 0.530519 | 5.3:-3148916 | MS.gene22292:CDS |
| GGCACGTAAAGCAGGAGCAT+TGG | 0.535611 | 5.3:-3148287 | MS.gene22292:intron |
| CTTGAAAGGCTTCCGTGTGG+TGG | 0.535913 | 5.3:-3146511 | MS.gene22292:CDS |
| CACCTTATCAAAAGTTGCGA+AGG | 0.536565 | 5.3:-3148375 | MS.gene22292:CDS |
| TGAAATGGCAAAGAGAGAAA+CGG | 0.542028 | 5.3:+3158016 | None:intergenic |
| CGTGGTAAGACCATGGGCAA+GGG | 0.542333 | 5.3:+3146480 | None:intergenic |
| ATTGTTGTAGGTGATATTTG+TGG | 0.543715 | 5.3:-3147211 | MS.gene22292:intron |
| GAAAACCGTGTTGCAGCTGT+TGG | 0.544146 | 5.3:-3155355 | MS.gene22292:CDS |
| TCAATCTGAAAATGGTGCTA+TGG | 0.546998 | 5.3:-3157945 | MS.gene22292:CDS |
| CATTGGATCAGTTGATGTTG+AGG | 0.551202 | 5.3:-3156280 | MS.gene22292:CDS |
| AGTATTTAAAATGGTTGATG+AGG | 0.551410 | 5.3:-3155299 | MS.gene22292:CDS |
| AATTTATCTTTGATGCTGAA+GGG | 0.551889 | 5.3:-3148977 | MS.gene22292:CDS |
| GGATGACAAGGATGAAGAGA+AGG | 0.558689 | 5.3:-3149027 | MS.gene22292:CDS |
| ACCTTACTCTTCTGGGCACG+AGG | 0.558993 | 5.3:+3157127 | None:intergenic |
| GGCACGACTGTTTACCAACC+AGG | 0.559294 | 5.3:-3156243 | MS.gene22292:CDS |
| CTTCAGCAAGTAAGCCTGGT+TGG | 0.561355 | 5.3:+3156229 | None:intergenic |
| TAAGTGTTTAGCTGCTCTGG+AGG | 0.561546 | 5.3:-3150458 | MS.gene22292:CDS |
| CAAAGAACAATTAAAATACC+TGG | 0.562014 | 5.3:-3154317 | MS.gene22292:CDS |
| AAAGGCTTCCGTGTGGTGGA+GGG | 0.562835 | 5.3:-3146507 | MS.gene22292:CDS |
| TGCTATGGTCCTTACTTCTG+AGG | 0.563672 | 5.3:-3157930 | MS.gene22292:CDS |
| GGGGCTACTGACCCTAGGAT+TGG | 0.568553 | 5.3:-3157263 | MS.gene22292:CDS |
| ATTTATCTTTGATGCTGAAG+GGG | 0.570562 | 5.3:-3148976 | MS.gene22292:CDS |
| GGTTATAGGTAGCAATCAGA+AGG | 0.570961 | 5.3:+3156070 | None:intergenic |
| CCGTGGTAAGACCATGGGCA+AGG | 0.574710 | 5.3:+3146479 | None:intergenic |
| CAATCAGAAGGGGCCTGCAG+GGG | 0.574993 | 5.3:+3156082 | None:intergenic |
| ATTAAAATACCTGGTACTTG+AGG | 0.575547 | 5.3:-3154308 | MS.gene22292:CDS |
| TGGCTAGGAAACGTCTTGAA+AGG | 0.581024 | 5.3:-3146525 | MS.gene22292:CDS |
| CAACAAGCACAGAGGCGCCG+TGG | 0.582485 | 5.3:-3148921 | MS.gene22292:CDS |
| GTTGAGGAGTCTGTGAAGAC+TGG | 0.586435 | 5.3:-3156264 | MS.gene22292:CDS |
| CTACTGACCCTAGGATTGGA+GGG | 0.596769 | 5.3:-3157259 | MS.gene22292:CDS |
| ATCGCATTGCAATTAACTTG+AGG | 0.596901 | 5.3:-3156014 | MS.gene22292:intron |
| TCTTTCTGAACAGGATGACA+AGG | 0.597752 | 5.3:-3149039 | MS.gene22292:intron |
| CTGTCCTCTGTGACTCCAAG+AGG | 0.597863 | 5.3:+3156306 | None:intergenic |
| TCTGAATAGTACCTGAACAA+AGG | 0.600732 | 5.3:+3156446 | None:intergenic |
| GGCAGAAAGTTATACAAGCA+GGG | 0.600782 | 5.3:-3147121 | MS.gene22292:CDS |
| CTAGATCGATTGCAATGGCT+AGG | 0.601938 | 5.3:-3146540 | MS.gene22292:CDS |
| TGCATACCGTGGTAAGACCA+TGG | 0.605407 | 5.3:+3146473 | None:intergenic |
| CGCGTGGAATATGATTCTGA+TGG | 0.606136 | 5.3:-3156498 | MS.gene22292:CDS |
| ATATTTGTGGTTGATGCCAG+TGG | 0.606523 | 5.3:-3147198 | MS.gene22292:CDS |
| TTTATCTTTGATGCTGAAGG+GGG | 0.606605 | 5.3:-3148975 | MS.gene22292:CDS |
| GTATCAATAATTCCTTTCCG+TGG | 0.607702 | 5.3:-3146592 | MS.gene22292:CDS |
| GAACTTCAGCTGAATCTCCA+CGG | 0.608553 | 5.3:+3146575 | None:intergenic |
| AGATGATCTTGCCCAACGCG+TGG | 0.610183 | 5.3:-3156514 | MS.gene22292:CDS |
| GTACTTGAGGCTTTACGAGG+TGG | 0.612443 | 5.3:-3154295 | MS.gene22292:CDS |
| ACCTTATCAAAAGTTGCGAA+GGG | 0.620961 | 5.3:-3148374 | MS.gene22292:CDS |
| TGGCCAATAACAGCAGCAAG+AGG | 0.621831 | 5.3:+3157863 | None:intergenic |
| TATCAAGCCAATGCTTCCAA+AGG | 0.621959 | 5.3:-3148847 | MS.gene22292:intron |
| TCAGCTGAATCTCCACGGAA+AGG | 0.621995 | 5.3:+3146580 | None:intergenic |
| GCATACCGTGGTAAGACCAT+GGG | 0.622210 | 5.3:+3146474 | None:intergenic |
| AAGTGTTTAGCTGCTCTGGA+GGG | 0.622335 | 5.3:-3150457 | MS.gene22292:CDS |
| GAGTTGAAGATTAGTGTAAG+GGG | 0.624035 | 5.3:+3158066 | None:intergenic |
| GGTTGATGCCAGTGGAAGCA+TGG | 0.625498 | 5.3:-3147190 | MS.gene22292:CDS |
| GTTATAGGTAGCAATCAGAA+GGG | 0.625655 | 5.3:+3156071 | None:intergenic |
| TTACTTGCTGAAGCTCATAG+AGG | 0.627283 | 5.3:-3156219 | MS.gene22292:CDS |
| TAGCAATCCCTCCAATCCTA+GGG | 0.627946 | 5.3:+3157252 | None:intergenic |
| GTGGTAAGACCATGGGCAAG+GGG | 0.630171 | 5.3:+3146481 | None:intergenic |
| CACGAACAGAACCCTCGTCA+GGG | 0.631145 | 5.3:+3156049 | None:intergenic |
| CTGGTACTTGAGGCTTTACG+AGG | 0.631220 | 5.3:-3154298 | MS.gene22292:CDS |
| ACCTTCTAGATCGATTGCAA+TGG | 0.641122 | 5.3:-3146545 | MS.gene22292:CDS |
| GGCCAATAACAGCAGCAAGA+GGG | 0.644982 | 5.3:+3157864 | None:intergenic |
| CTTGGCTAGAGAGTATCTCA+AGG | 0.645683 | 5.3:-3154353 | MS.gene22292:CDS |
| AGGGGTGACCCTCCACCACA+CGG | 0.649940 | 5.3:+3146499 | None:intergenic |
| TACAGACAATGCAAAGACAC+AGG | 0.654379 | 5.3:-3155275 | MS.gene22292:intron |
| CAATTCCAACAGCTGCAACA+CGG | 0.658426 | 5.3:+3155350 | None:intergenic |
| TGCTACCTATAACCCTGACG+AGG | 0.663872 | 5.3:-3156061 | MS.gene22292:CDS |
| TATGGTCCTTACTTCTGAGG+AGG | 0.667079 | 5.3:-3157927 | MS.gene22292:CDS |
| CCTTACTCTTCTGGGCACGA+GGG | 0.673244 | 5.3:+3157128 | None:intergenic |
| GAGGGATTGCTATATCAGGA+AGG | 0.673630 | 5.3:-3157241 | MS.gene22292:CDS |
| CCTTGCCCATGGTCTTACCA+CGG | 0.679671 | 5.3:-3146479 | None:intergenic |
| ATTGCAATCGATCTAGAAGG+TGG | 0.681426 | 5.3:+3146547 | None:intergenic |
| CCTTCTACTACTTCAATAGG+CGG | 0.685944 | 5.3:+3157170 | None:intergenic |
| ATTGCTATATCAGGAAGGCG+AGG | 0.686132 | 5.3:-3157236 | MS.gene22292:CDS |
| TTATAGGTAGCAATCAGAAG+GGG | 0.696472 | 5.3:+3156072 | None:intergenic |
| TCTTTGCCCAACAAGCACAG+AGG | 0.710858 | 5.3:-3148929 | MS.gene22292:CDS |
| GCTAAAACGATAATGGCACG+TGG | 0.711240 | 5.3:-3157209 | MS.gene22292:CDS |
| GCTACCTATAACCCTGACGA+GGG | 0.713287 | 5.3:-3156060 | MS.gene22292:CDS |
| ACAGAATTTCAGGATAACTG+TGG | 0.720569 | 5.3:-3155325 | MS.gene22292:CDS |
| CGTCTTGAAAGGCTTCCGTG+TGG | 0.726411 | 5.3:-3146514 | MS.gene22292:CDS |
| GGGACGTGAAAAGGTTTACG+CGG | 0.726630 | 5.3:-3150437 | MS.gene22292:CDS |
| GATTCCTCTTGGAGTCACAG+AGG | 0.727534 | 5.3:-3156310 | MS.gene22292:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3146480 | 3158128 | 3146480 | ID=MS.gene22292 |
| chr5.3 | mRNA | 3146480 | 3158128 | 3146480 | ID=MS.gene22292.t1;Parent=MS.gene22292 |
| chr5.3 | exon | 3157862 | 3158128 | 3157862 | ID=MS.gene22292.t1.exon1;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3157862 | 3158128 | 3157862 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3157134 | 3157312 | 3157134 | ID=MS.gene22292.t1.exon2;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3157134 | 3157312 | 3157134 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3156458 | 3156542 | 3156458 | ID=MS.gene22292.t1.exon3;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3156458 | 3156542 | 3156458 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3156015 | 3156331 | 3156015 | ID=MS.gene22292.t1.exon4;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3156015 | 3156331 | 3156015 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3155276 | 3155399 | 3155276 | ID=MS.gene22292.t1.exon5;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3155276 | 3155399 | 3155276 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3154288 | 3154380 | 3154288 | ID=MS.gene22292.t1.exon6;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3154288 | 3154380 | 3154288 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3150420 | 3150515 | 3150420 | ID=MS.gene22292.t1.exon7;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3150420 | 3150515 | 3150420 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3148848 | 3149048 | 3148848 | ID=MS.gene22292.t1.exon8;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3148848 | 3149048 | 3148848 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3148288 | 3148443 | 3148288 | ID=MS.gene22292.t1.exon9;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3148288 | 3148443 | 3148288 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3147116 | 3147223 | 3147116 | ID=MS.gene22292.t1.exon10;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3147116 | 3147223 | 3147116 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| chr5.3 | exon | 3146480 | 3146614 | 3146480 | ID=MS.gene22292.t1.exon11;Parent=MS.gene22292.t1 |
| chr5.3 | CDS | 3146480 | 3146614 | 3146480 | ID=cds.MS.gene22292.t1;Parent=MS.gene22292.t1 |
| Gene Sequence |
| Protein sequence |
