Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46487.t1 | XP_013467693.1 | 99.2 | 132 | 1 | 0 | 1 | 132 | 228 | 359 | 2.80E-63 | 251.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46487.t1 | Q1ACB3 | 80.0 | 130 | 26 | 0 | 1 | 130 | 222 | 351 | 4.7e-51 | 201.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46487.t1 | A0A072VUE3 | 99.2 | 132 | 1 | 0 | 1 | 132 | 228 | 359 | 2.0e-63 | 251.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene46487 | 0.818649 | 1.76E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene46487 | 0.86201 | 6.86E-64 | -1.69E-46 |
| MS.gene049222 | MS.gene46487 | 0.853222 | 2.76E-61 | -1.69E-46 |
| MS.gene049232 | MS.gene46487 | 0.806979 | 6.32E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene46487 | 0.85841 | 8.40E-63 | -1.69E-46 |
| MS.gene049320 | MS.gene46487 | 0.864961 | 8.34E-65 | -1.69E-46 |
| MS.gene049427 | MS.gene46487 | 0.8237 | 1.20E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene46487 | 0.849843 | 2.49E-60 | -1.69E-46 |
| MS.gene049627 | MS.gene46487 | 0.810661 | 1.03E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene46487 | 0.851782 | 7.09E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene46487 | 0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene46487 | 0.825208 | 5.31E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene46487 | 0.862821 | 3.86E-64 | -1.69E-46 |
| MS.gene050165 | MS.gene46487 | 0.864381 | 1.27E-64 | -1.69E-46 |
| MS.gene050323 | MS.gene46487 | 0.818046 | 2.40E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene46487 | 0.829581 | 4.75E-55 | -1.69E-46 |
| MS.gene050353 | MS.gene46487 | -0.810195 | 1.30E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene46487 | 0.801076 | 1.07E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene46487 | 0.86179 | 8.01E-64 | -1.69E-46 |
| MS.gene050518 | MS.gene46487 | 0.860365 | 2.17E-63 | -1.69E-46 |
| MS.gene050538 | MS.gene46487 | 0.823794 | 1.14E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene46487 | 0.811236 | 7.75E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene46487 | 0.829615 | 4.66E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene46487 | 0.872857 | 2.30E-67 | -1.69E-46 |
| MS.gene050662 | MS.gene46487 | 0.804788 | 1.83E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene46487 | 0.881735 | 1.87E-70 | -1.69E-46 |
| MS.gene050699 | MS.gene46487 | 0.860172 | 2.49E-63 | -1.69E-46 |
| MS.gene050747 | MS.gene46487 | 0.828868 | 7.08E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene46487 | 0.86375 | 1.99E-64 | -1.69E-46 |
| MS.gene05080 | MS.gene46487 | 0.826977 | 2.02E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene46487 | 0.827294 | 1.69E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene46487 | 0.828071 | 1.10E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene46487 | 0.807818 | 4.20E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene46487 | 0.844995 | 5.35E-59 | -1.69E-46 |
| MS.gene050986 | MS.gene46487 | 0.868075 | 8.55E-66 | -1.69E-46 |
| MS.gene051228 | MS.gene46487 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene051317 | MS.gene46487 | 0.832112 | 1.14E-55 | -1.69E-46 |
| MS.gene051434 | MS.gene46487 | 0.829072 | 6.32E-55 | -1.69E-46 |
| MS.gene051551 | MS.gene46487 | 0.809183 | 2.15E-50 | -1.69E-46 |
| MS.gene051617 | MS.gene46487 | 0.810474 | 1.13E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene46487 | 0.829287 | 5.60E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene46487 | 0.883771 | 3.38E-71 | -1.69E-46 |
| MS.gene051838 | MS.gene46487 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene46487 | 0.84974 | 2.66E-60 | -1.69E-46 |
| MS.gene052164 | MS.gene46487 | 0.831206 | 1.90E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene46487 | 0.817894 | 2.60E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene46487 | 0.829376 | 5.33E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene46487 | 0.808227 | 3.44E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene46487 | 0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene052506 | MS.gene46487 | 0.811872 | 5.63E-51 | -1.69E-46 |
| MS.gene052510 | MS.gene46487 | 0.802066 | 6.69E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene46487 | 0.848216 | 7.06E-60 | -1.69E-46 |
| MS.gene052822 | MS.gene46487 | 0.820334 | 7.24E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene46487 | 0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene46487 | 0.829518 | 4.92E-55 | -1.69E-46 |
| MS.gene052916 | MS.gene46487 | 0.833578 | 4.92E-56 | -1.69E-46 |
| MS.gene052966 | MS.gene46487 | 0.843514 | 1.34E-58 | -1.69E-46 |
| MS.gene053009 | MS.gene46487 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene053107 | MS.gene46487 | 0.802313 | 5.95E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene46487 | 0.855319 | 6.83E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene46487 | 0.864802 | 9.36E-65 | -1.69E-46 |
| MS.gene053213 | MS.gene46487 | 0.869813 | 2.34E-66 | -1.69E-46 |
| MS.gene053286 | MS.gene46487 | 0.869351 | 3.31E-66 | -1.69E-46 |
| MS.gene053574 | MS.gene46487 | 0.850716 | 1.42E-60 | -1.69E-46 |
| MS.gene053632 | MS.gene46487 | 0.819622 | 1.05E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene46487 | 0.812478 | 4.15E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene46487 | 0.855783 | 5.00E-62 | -1.69E-46 |
| MS.gene054642 | MS.gene46487 | 0.879906 | 8.50E-70 | -1.69E-46 |
| MS.gene05470 | MS.gene46487 | 0.800518 | 1.39E-48 | -1.69E-46 |
| MS.gene054954 | MS.gene46487 | 0.849024 | 4.22E-60 | -1.69E-46 |
| MS.gene055206 | MS.gene46487 | 0.837371 | 5.41E-57 | -1.69E-46 |
| MS.gene055289 | MS.gene46487 | 0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene46487 | 0.852153 | 5.56E-61 | -1.69E-46 |
| MS.gene055397 | MS.gene46487 | 0.820555 | 6.45E-53 | -1.69E-46 |
| MS.gene055499 | MS.gene46487 | 0.817436 | 3.30E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene46487 | 0.851076 | 1.12E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene46487 | 0.886927 | 2.23E-72 | -1.69E-46 |
| MS.gene055636 | MS.gene46487 | 0.806503 | 7.97E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene46487 | 0.833533 | 5.05E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene46487 | 0.855348 | 6.70E-62 | -1.69E-46 |
| MS.gene055748 | MS.gene46487 | 0.801941 | 7.10E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene46487 | 0.805155 | 1.53E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene46487 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene46487 | 0.831863 | 1.31E-55 | -1.69E-46 |
| MS.gene056083 | MS.gene46487 | 0.842708 | 2.19E-58 | -1.69E-46 |
| MS.gene056374 | MS.gene46487 | 0.854434 | 1.23E-61 | -1.69E-46 |
| MS.gene056409 | MS.gene46487 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene46487 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene056510 | MS.gene46487 | 0.844107 | 9.28E-59 | -1.69E-46 |
| MS.gene056549 | MS.gene46487 | 0.810829 | 9.49E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene46487 | 0.863314 | 2.72E-64 | -1.69E-46 |
| MS.gene05666 | MS.gene46487 | 0.815875 | 7.39E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene46487 | 0.834012 | 3.83E-56 | -1.69E-46 |
| MS.gene056897 | MS.gene46487 | 0.801333 | 9.46E-49 | -1.69E-46 |
| MS.gene056946 | MS.gene46487 | 0.804604 | 1.99E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene46487 | 0.828607 | 8.18E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene46487 | 0.808303 | 3.31E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene46487 | 0.872461 | 3.12E-67 | -1.69E-46 |
| MS.gene057416 | MS.gene46487 | 0.84004 | 1.10E-57 | -1.69E-46 |
| MS.gene057831 | MS.gene46487 | 0.825511 | 4.50E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene46487 | 0.823775 | 1.16E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene46487 | 0.833307 | 5.75E-56 | -1.69E-46 |
| MS.gene058323 | MS.gene46487 | 0.832193 | 1.09E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene46487 | 0.823894 | 1.08E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene46487 | 0.845709 | 3.43E-59 | -1.69E-46 |
| MS.gene058544 | MS.gene46487 | 0.825155 | 5.47E-54 | -1.69E-46 |
| MS.gene058723 | MS.gene46487 | 0.858902 | 5.99E-63 | -1.69E-46 |
| MS.gene058773 | MS.gene46487 | 0.865453 | 5.84E-65 | -1.69E-46 |
| MS.gene058838 | MS.gene46487 | 0.810997 | 8.73E-51 | -1.69E-46 |
| MS.gene05883 | MS.gene46487 | 0.852441 | 4.61E-61 | -1.69E-46 |
| MS.gene059022 | MS.gene46487 | 0.858742 | 6.69E-63 | -1.69E-46 |
| MS.gene059023 | MS.gene46487 | 0.841336 | 5.05E-58 | -1.69E-46 |
| MS.gene059029 | MS.gene46487 | 0.834243 | 3.35E-56 | -1.69E-46 |
| MS.gene05913 | MS.gene46487 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene059181 | MS.gene46487 | 0.820492 | 6.66E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene46487 | 0.821629 | 3.65E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene46487 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene46487 | 0.862375 | 5.30E-64 | -1.69E-46 |
| MS.gene059699 | MS.gene46487 | -0.802012 | 6.86E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene46487 | 0.872802 | 2.40E-67 | -1.69E-46 |
| MS.gene059756 | MS.gene46487 | 0.812743 | 3.64E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene46487 | 0.858342 | 8.80E-63 | -1.69E-46 |
| MS.gene059902 | MS.gene46487 | 0.84808 | 7.70E-60 | -1.69E-46 |
| MS.gene059960 | MS.gene46487 | 0.802972 | 4.35E-49 | -1.69E-46 |
| MS.gene060193 | MS.gene46487 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene46487 | 0.836383 | 9.66E-57 | -1.69E-46 |
| MS.gene060703 | MS.gene46487 | 0.834219 | 3.40E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene46487 | 0.86732 | 1.49E-65 | -1.69E-46 |
| MS.gene06077 | MS.gene46487 | 0.825096 | 5.65E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene46487 | 0.82705 | 1.94E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene46487 | 0.833154 | 6.28E-56 | -1.69E-46 |
| MS.gene060835 | MS.gene46487 | 0.826554 | 2.55E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene46487 | 0.801831 | 7.48E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene46487 | 0.822203 | 2.69E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene46487 | 0.850147 | 2.05E-60 | -1.69E-46 |
| MS.gene061134 | MS.gene46487 | 0.834692 | 2.59E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene46487 | 0.841408 | 4.84E-58 | -1.69E-46 |
| MS.gene061200 | MS.gene46487 | 0.823633 | 1.25E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46487.t1 | MTR_1g054305 | 99.242 | 132 | 1 | 0 | 1 | 132 | 228 | 359 | 5.37e-88 | 261 |
| MS.gene46487.t1 | MTR_4g127800 | 29.197 | 137 | 86 | 2 | 2 | 132 | 248 | 379 | 6.54e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46487.t1 | AT3G11945 | 80.000 | 130 | 26 | 0 | 1 | 130 | 222 | 351 | 4.33e-68 | 210 |
| MS.gene46487.t1 | AT3G11945 | 80.000 | 130 | 26 | 0 | 1 | 130 | 229 | 358 | 6.60e-68 | 210 |
| MS.gene46487.t1 | AT2G18950 | 31.496 | 127 | 86 | 1 | 2 | 127 | 230 | 356 | 3.19e-15 | 71.2 |
| MS.gene46487.t1 | AT2G18950 | 33.708 | 89 | 58 | 1 | 2 | 89 | 230 | 318 | 6.91e-12 | 61.2 |
Find 22 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACCTTTGCTACAAAATT+AGG | 0.197774 | 1.1:-42142075 | MS.gene46487:CDS |
| GGTGTTGTTGACAGGCTTTC+AGG | 0.223817 | 1.1:-42141891 | MS.gene46487:intron |
| AACATTTCTTTCCTTGGTTC+TGG | 0.229462 | 1.1:-42142045 | MS.gene46487:CDS |
| CATATAAATTGCTGCCAATA+TGG | 0.315997 | 1.1:+42141996 | None:intergenic |
| GTTCGGAACATTTCTTTCCT+TGG | 0.385731 | 1.1:-42142051 | MS.gene46487:CDS |
| GAACTATGTTGTTACCATAT+TGG | 0.406125 | 1.1:-42142010 | MS.gene46487:CDS |
| ATAATAAGAAATGCTGCAAC+AGG | 0.417997 | 1.1:+42142815 | None:intergenic |
| TTGCTACAAAATTAGGAGTT+CGG | 0.428806 | 1.1:-42142068 | MS.gene46487:CDS |
| CTACGATCTCCTTCAACATC+TGG | 0.429352 | 1.1:+42142310 | None:intergenic |
| GTTGACAGGCTTTCAGGAGA+TGG | 0.469985 | 1.1:-42141885 | MS.gene46487:intron |
| AAAGATCTTCCAGATGTTGA+AGG | 0.481104 | 1.1:-42142319 | MS.gene46487:CDS |
| AGCATTTCTTATTATTGCTA+CGG | 0.484068 | 1.1:-42142807 | MS.gene46487:intron |
| TGCTTCAAGCTTGATTTACC+AGG | 0.498689 | 1.1:-42141836 | MS.gene46487:CDS |
| GGCAGCAATTTATATGCCCC+AGG | 0.523927 | 1.1:-42141989 | MS.gene46487:intron |
| ATTAATCCGCTCATCGAACC+TGG | 0.545003 | 1.1:+42141818 | None:intergenic |
| TACGCCACTAGAGCTGCTCT+TGG | 0.549187 | 1.1:-42142639 | MS.gene46487:CDS |
| AAGTCCAAGAGCAGCTCTAG+TGG | 0.553924 | 1.1:+42142635 | None:intergenic |
| ATCTGCCTGCAGCTCTCCTG+TGG | 0.560779 | 1.1:-42142392 | MS.gene46487:intron |
| GAAGCAAATATTGCATGAGC+TGG | 0.584720 | 1.1:+42141853 | None:intergenic |
| TCAGCAAAATTCCAGAACCA+AGG | 0.633793 | 1.1:+42142034 | None:intergenic |
| CAGATGTTGAAGGAGATCGT+AGG | 0.666387 | 1.1:-42142309 | MS.gene46487:intron |
| AAGAGACTTATGCAGGTACG+CGG | 0.681026 | 1.1:-42142687 | MS.gene46487:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGGTTTATTTTGAAATGA+AGG | + | chr1.1:42142734-42142753 | None:intergenic | 20.0% |
| ! | AATAAACCTTATGTAAGTTG+TGG | - | chr1.1:42142743-42142762 | MS.gene46487:intron | 25.0% |
| ! | AGCATTTCTTATTATTGCTA+CGG | - | chr1.1:42141848-42141867 | MS.gene46487:CDS | 25.0% |
| ! | ATTGCATGTAATAATTAACC+AGG | - | chr1.1:42142548-42142567 | MS.gene46487:intron | 25.0% |
| !! | ACAGTTAGTAAAGTATCATT+TGG | - | chr1.1:42141928-42141947 | MS.gene46487:intron | 25.0% |
| !!! | GTTGTTTCATATTTTGCAAT+TGG | - | chr1.1:42142077-42142096 | MS.gene46487:CDS | 25.0% |
| AAAGTTGTGATAAAAACCAC+AGG | + | chr1.1:42142282-42142301 | None:intergenic | 30.0% | |
| AGTGTCTATTGTTTGATTAG+AGG | - | chr1.1:42142126-42142145 | MS.gene46487:intron | 30.0% | |
| ATAATAAGAAATGCTGCAAC+AGG | + | chr1.1:42141843-42141862 | None:intergenic | 30.0% | |
| CATATAAATTGCTGCCAATA+TGG | + | chr1.1:42142662-42142681 | None:intergenic | 30.0% | |
| GAACTATGTTGTTACCATAT+TGG | - | chr1.1:42142645-42142664 | MS.gene46487:CDS | 30.0% | |
| GATCATCAACAAATAAAGAG+TGG | + | chr1.1:42142513-42142532 | None:intergenic | 30.0% | |
| TGATGATCATGCATGTAATA+TGG | - | chr1.1:42142525-42142544 | MS.gene46487:intron | 30.0% | |
| TTAGAATCATGTTGCGTTAA+GGG | - | chr1.1:42142375-42142394 | MS.gene46487:CDS | 30.0% | |
| TTGCTACAAAATTAGGAGTT+CGG | - | chr1.1:42142587-42142606 | MS.gene46487:intron | 30.0% | |
| ! | AACTCCTAATTTTGTAGCAA+AGG | + | chr1.1:42142587-42142606 | None:intergenic | 30.0% |
| ! | TTTAGAATCATGTTGCGTTA+AGG | - | chr1.1:42142374-42142393 | MS.gene46487:CDS | 30.0% |
| ! | TTTCGTAACATTTTTCGCAT+TGG | - | chr1.1:42142299-42142318 | MS.gene46487:intron | 30.0% |
| AAAGATCTTCCAGATGTTGA+AGG | - | chr1.1:42142336-42142355 | MS.gene46487:CDS | 35.0% | |
| AACATTTCTTTCCTTGGTTC+TGG | - | chr1.1:42142610-42142629 | MS.gene46487:intron | 35.0% | |
| ACAACACCACAACTTACATA+AGG | + | chr1.1:42142752-42142771 | None:intergenic | 35.0% | |
| ACAAGATCAAACGCATAAGT+TGG | + | chr1.1:42142241-42142260 | None:intergenic | 35.0% | |
| AGTGCAAAGATTGTGAGAAA+AGG | + | chr1.1:42141887-42141906 | None:intergenic | 35.0% | |
| TCGACCTTTGCTACAAAATT+AGG | - | chr1.1:42142580-42142599 | MS.gene46487:intron | 35.0% | |
| ! | AGACTAGTTAACATTCACCT+GGG | + | chr1.1:42142686-42142705 | None:intergenic | 35.0% |
| AAAGGTCGATATCTGATACC+TGG | + | chr1.1:42142569-42142588 | None:intergenic | 40.0% | |
| GAAGCAAATATTGCATGAGC+TGG | + | chr1.1:42142805-42142824 | None:intergenic | 40.0% | |
| GCAAAGATTGTGAGAAAAGG+AGG | + | chr1.1:42141884-42141903 | None:intergenic | 40.0% | |
| GTTAAGGGTTGCAAGTTCAT+TGG | - | chr1.1:42142390-42142409 | MS.gene46487:intron | 40.0% | |
| GTTCGGAACATTTCTTTCCT+TGG | - | chr1.1:42142604-42142623 | MS.gene46487:intron | 40.0% | |
| TCAGCAAAATTCCAGAACCA+AGG | + | chr1.1:42142624-42142643 | None:intergenic | 40.0% | |
| TGCTTCAAGCTTGATTTACC+AGG | - | chr1.1:42142819-42142838 | MS.gene46487:CDS | 40.0% | |
| TTGACAGAAGAGACTTATGC+AGG | - | chr1.1:42141961-42141980 | MS.gene46487:intron | 40.0% | |
| ! | AACGCATAAGTTGGAGACAA+CGG | + | chr1.1:42142232-42142251 | None:intergenic | 40.0% |
| ! | CGCGGTTTTCTACTAAACTT+TGG | - | chr1.1:42141986-42142005 | MS.gene46487:intron | 40.0% |
| ! | GACTAGTTAACATTCACCTG+GGG | + | chr1.1:42142685-42142704 | None:intergenic | 40.0% |
| ! | GAGACTAGTTAACATTCACC+TGG | + | chr1.1:42142687-42142706 | None:intergenic | 40.0% |
| !! | TAAGTTGTGGTGTTGTTGAC+AGG | - | chr1.1:42142756-42142775 | MS.gene46487:intron | 40.0% |
| AAGAGACTTATGCAGGTACG+CGG | - | chr1.1:42141968-42141987 | MS.gene46487:intron | 45.0% | |
| CAGATGTTGAAGGAGATCGT+AGG | - | chr1.1:42142346-42142365 | MS.gene46487:CDS | 45.0% | |
| CTACGATCTCCTTCAACATC+TGG | + | chr1.1:42142348-42142367 | None:intergenic | 45.0% | |
| !! | CTCTTGGACTTGCTTTTGAG+TGG | - | chr1.1:42142032-42142051 | MS.gene46487:CDS | 45.0% |
| !! | TTGGACTTGCTTTTGAGTGG+AGG | - | chr1.1:42142035-42142054 | MS.gene46487:CDS | 45.0% |
| AAAAACCACAGGAGAGCTGC+AGG | + | chr1.1:42142271-42142290 | None:intergenic | 50.0% | |
| GGCAGCAATTTATATGCCCC+AGG | - | chr1.1:42142666-42142685 | MS.gene46487:CDS | 50.0% | |
| GTTGACAGGCTTTCAGGAGA+TGG | - | chr1.1:42142770-42142789 | MS.gene46487:intron | 50.0% | |
| ! | AAGTCCAAGAGCAGCTCTAG+TGG | + | chr1.1:42142023-42142042 | None:intergenic | 50.0% |
| !! | GGTGTTGTTGACAGGCTTTC+AGG | - | chr1.1:42142764-42142783 | MS.gene46487:intron | 50.0% |
| TACGCCACTAGAGCTGCTCT+TGG | - | chr1.1:42142016-42142035 | MS.gene46487:CDS | 55.0% | |
| ATCTGCCTGCAGCTCTCCTG+TGG | - | chr1.1:42142263-42142282 | MS.gene46487:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 42141828 | 42142849 | 42141828 | ID=MS.gene46487 |
| chr1.1 | mRNA | 42141828 | 42142849 | 42141828 | ID=MS.gene46487.t1;Parent=MS.gene46487 |
| chr1.1 | exon | 42142808 | 42142849 | 42142808 | ID=MS.gene46487.t1.exon1;Parent=MS.gene46487.t1 |
| chr1.1 | CDS | 42142808 | 42142849 | 42142808 | ID=cds.MS.gene46487.t1;Parent=MS.gene46487.t1 |
| chr1.1 | exon | 42142621 | 42142694 | 42142621 | ID=MS.gene46487.t1.exon2;Parent=MS.gene46487.t1 |
| chr1.1 | CDS | 42142621 | 42142694 | 42142621 | ID=cds.MS.gene46487.t1;Parent=MS.gene46487.t1 |
| chr1.1 | exon | 42142310 | 42142402 | 42142310 | ID=MS.gene46487.t1.exon3;Parent=MS.gene46487.t1 |
| chr1.1 | CDS | 42142310 | 42142402 | 42142310 | ID=cds.MS.gene46487.t1;Parent=MS.gene46487.t1 |
| chr1.1 | exon | 42141990 | 42142107 | 42141990 | ID=MS.gene46487.t1.exon4;Parent=MS.gene46487.t1 |
| chr1.1 | CDS | 42141990 | 42142107 | 42141990 | ID=cds.MS.gene46487.t1;Parent=MS.gene46487.t1 |
| chr1.1 | exon | 42141828 | 42141899 | 42141828 | ID=MS.gene46487.t1.exon5;Parent=MS.gene46487.t1 |
| chr1.1 | CDS | 42141828 | 42141899 | 42141828 | ID=cds.MS.gene46487.t1;Parent=MS.gene46487.t1 |
| Gene Sequence |
| Protein sequence |
