AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022176.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022176.01.T01 MTR_4g083990 98.844 173 2 0 1 173 1 173 8.89e-128 356
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022176.01.T01 AT5G45040 73.485 132 35 0 40 171 44 175 7.83e-74 219

Find 42 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCTTGCTTGTCTGATTTC+TGG 0.156602 4:-69309387 MsG0480022176.01.T01:CDS
CTCTTTGGATATCTATTGTT+TGG 0.198050 4:+69307124 None:intergenic
GGCTGAGTTTGTCAAGTTAC+AGG 0.238541 4:-69306417 MsG0480022176.01.T01:CDS
GTCAAGTTACAGGCTGATAA+AGG 0.319514 4:-69306407 MsG0480022176.01.T01:CDS
CAACCTGGAGTGGCGCAAAT+TGG 0.326523 4:+69309121 None:intergenic
TGAACAATGTTGCTCCTCTT+TGG 0.345483 4:+69307109 None:intergenic
CCACGAGGGCAGTGCACATT+TGG 0.345899 4:-69306473 MsG0480022176.01.T01:CDS
TCTTTGGATATCTATTGTTT+GGG 0.347185 4:+69307125 None:intergenic
ATCTACCGTGTCACGTACTA+TGG 0.365275 4:-69306693 MsG0480022176.01.T01:CDS
GTGCACATTTGGTGCTCGTT+TGG 0.375964 4:-69306462 MsG0480022176.01.T01:CDS
TCAGACAAGCAAGCTTCATT+TGG 0.389961 4:+69309394 None:intergenic
CAATAATCCTGTCTCCATAA+AGG 0.416161 4:-69309361 MsG0480022176.01.T01:intron
TTGTTCAGCCAAACATGTAT+TGG 0.417027 4:-69307093 MsG0480022176.01.T01:CDS
AGATGAAGATATCAAGATAT+TGG 0.420639 4:-69306438 MsG0480022176.01.T01:CDS
CGTGACATCCAATACATGTT+TGG 0.423635 4:+69307085 None:intergenic
ATTACAGGATAACGTGAAAC+GGG 0.448174 4:-69309245 MsG0480022176.01.T01:intron
CTAAAATGCAGAAGTTTGCT+TGG 0.449090 4:-69306153 MsG0480022176.01.T01:three_prime_UTR
TATAGTTCTACGCAGGGGTT+TGG 0.449832 4:-69306509 MsG0480022176.01.T01:intron
TCAAGTTACAGGCTGATAAA+GGG 0.462996 4:-69306406 MsG0480022176.01.T01:CDS
TCTCCAATTTGCGCCACTCC+AGG 0.479406 4:-69309124 MsG0480022176.01.T01:intron
GATTACAGGATAACGTGAAA+CGG 0.480757 4:-69309246 MsG0480022176.01.T01:intron
ACCAATCCATAATGAAAAGA+TGG 0.486136 4:+69306331 None:intergenic
CAATATGTGGAAGTTCCAAC+TGG 0.497926 4:-69306185 MsG0480022176.01.T01:three_prime_UTR
GAAGTGAATACTTCAATATG+TGG 0.522700 4:-69306198 MsG0480022176.01.T01:three_prime_UTR
TTGAAGTATTCACTTCTATG+AGG 0.523286 4:+69306205 None:intergenic
AGAAAGGCAGCCGCAAGAGG+AGG 0.570107 4:+69309154 None:intergenic
CCAAATGTGCACTGCCCTCG+TGG 0.576137 4:+69306473 None:intergenic
CAACTTGGCTCCTCCTCTTG+CGG 0.582072 4:-69309164 MsG0480022176.01.T01:CDS
AGCAGAAAGGCAGCCGCAAG+AGG 0.590194 4:+69309151 None:intergenic
TGTATTGGATGTCACGATGC+AGG 0.593033 4:-69307078 MsG0480022176.01.T01:CDS
AAAGAGTAACCAACCTGGAG+TGG 0.599652 4:+69309111 None:intergenic
CGTGTCACGTACTATGGCAA+AGG 0.616930 4:-69306687 MsG0480022176.01.T01:CDS
CAAACAATAGATATCCAAAG+AGG 0.625176 4:-69307123 MsG0480022176.01.T01:CDS
CTATGGCAAAGGAAGAATGC+CGG 0.626553 4:-69306676 MsG0480022176.01.T01:intron
AATTGGAGAAAATAGCAGAA+AGG 0.628466 4:+69309138 None:intergenic
CTTTGCCATAGTACGTGACA+CGG 0.648192 4:+69306688 None:intergenic
TATTCACAAAGGATTTACAA+AGG 0.666724 4:-69306922 MsG0480022176.01.T01:intron
GGTAAAGAGTGCATGCCACG+AGG 0.676403 4:-69306488 MsG0480022176.01.T01:CDS
GTAAAGAGTGCATGCCACGA+GGG 0.681699 4:-69306487 MsG0480022176.01.T01:CDS
AGTTACAGGCTGATAAAGGG+TGG 0.682583 4:-69306403 MsG0480022176.01.T01:CDS
GGGGTCAACTCTATTCACAA+AGG 0.702168 4:-69306933 MsG0480022176.01.T01:CDS
ATTGGATGTCACGATGCAGG+TGG 0.703936 4:-69307075 MsG0480022176.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATCAAAAAAACATAT+TGG - Chr4:69308177-69308196 MsG0480022176.01.T01:intron 10.0%
!! AAAAAAAAAACTCTACAATA+AGG + Chr4:69307825-69307844 None:intergenic 15.0%
!! ACATAACAATTAATATACTA+AGG + Chr4:69307860-69307879 None:intergenic 15.0%
!! CATTTCTAAATTAAATTGAA+GGG + Chr4:69307099-69307118 None:intergenic 15.0%
!! AAGCACTAAATTTATCAAAA+GGG - Chr4:69308682-69308701 MsG0480022176.01.T01:intron 20.0%
!! ACTTTGCATAAATTTCAATA+TGG + Chr4:69307572-69307591 None:intergenic 20.0%
!! ATATTGAAATTTATGCAAAG+TGG - Chr4:69307571-69307590 MsG0480022176.01.T01:intron 20.0%
!! CCATTTCTAAATTAAATTGA+AGG + Chr4:69307100-69307119 None:intergenic 20.0%
!! CTATATAGAGAAAATTGAAT+GGG - Chr4:69306698-69306717 MsG0480022176.01.T01:CDS 20.0%
!! TAAATGTTGTTCTATAGAAA+TGG - Chr4:69308839-69308858 MsG0480022176.01.T01:intron 20.0%
!! TCTATATAGAGAAAATTGAA+TGG - Chr4:69306697-69306716 MsG0480022176.01.T01:CDS 20.0%
!! TTAATAAGACATTTGATTAC+AGG - Chr4:69306314-69306333 MsG0480022176.01.T01:three_prime_UTR 20.0%
!!! AAAGCACTAAATTTATCAAA+AGG - Chr4:69308681-69308700 MsG0480022176.01.T01:intron 20.0%
!!! AAGAAAAAGCTTTGATTTAA+TGG + Chr4:69306832-69306851 None:intergenic 20.0%
!!! CCTTCAATTTAATTTAGAAA+TGG - Chr4:69307097-69307116 MsG0480022176.01.T01:CDS 20.0%
!!! GTCTTATTAATTATATTGTG+AGG + Chr4:69306304-69306323 None:intergenic 20.0%
!!! TTTTTTTAAAACTCAGTATC+CGG + Chr4:69306775-69306794 None:intergenic 20.0%
! AAGGAGAAAAAAAAAGGAAA+GGG + Chr4:69308618-69308637 None:intergenic 25.0%
! ACAAAACAAATAAGAGTGAA+TGG + Chr4:69306544-69306563 None:intergenic 25.0%
! AGATGAAGATATCAAGATAT+TGG - Chr4:69309136-69309155 MsG0480022176.01.T01:CDS 25.0%
! ATCAATGTTAAGATTGAAAG+AGG + Chr4:69307603-69307622 None:intergenic 25.0%
! CTATTCATATAAAATTGCTC+TGG - Chr4:69308763-69308782 MsG0480022176.01.T01:intron 25.0%
! TATTCACAAAGGATTTACAA+AGG - Chr4:69308652-69308671 MsG0480022176.01.T01:intron 25.0%
! TCTTTCAATCTTAACATTGA+TGG - Chr4:69307602-69307621 MsG0480022176.01.T01:intron 25.0%
! TCTTTGGATATCTATTGTTT+GGG + Chr4:69308452-69308471 None:intergenic 25.0%
! TGTGGAGAAATTTATAAGTA+TGG - Chr4:69307280-69307299 MsG0480022176.01.T01:intron 25.0%
! TTCTAAATTAAATTGAAGGG+AGG + Chr4:69307096-69307115 None:intergenic 25.0%
!! AGCATATTTTACTGTTTTAC+TGG + Chr4:69306871-69306890 None:intergenic 25.0%
!! TTGACTCGTTGAAAAAATTA+AGG - Chr4:69307147-69307166 MsG0480022176.01.T01:intron 25.0%
!!! AACAAATCAACTAGTTTTTC+AGG - Chr4:69307444-69307463 MsG0480022176.01.T01:intron 25.0%
!!! ATATATCTAGCTTTATGTTC+TGG - Chr4:69308562-69308581 MsG0480022176.01.T01:intron 25.0%
!!! ATTTATTTTTCCTCTTGAAC+TGG + Chr4:69308209-69308228 None:intergenic 25.0%
!!! ATTTTTTCAACGAGTCAATT+TGG + Chr4:69307145-69307164 None:intergenic 25.0%
!!! CATTGATTAGCTTTCATTTT+AGG + Chr4:69308789-69308808 None:intergenic 25.0%
!!! GAAACATCATTTTGTTTTGA+GGG - Chr4:69307236-69307255 MsG0480022176.01.T01:intron 25.0%
!!! GTTGCTAAATCATTTTTGTT+CGG + Chr4:69309210-69309229 None:intergenic 25.0%
!!! TGAAGTTAGTTTTTTAGTCT+TGG - Chr4:69307314-69307333 MsG0480022176.01.T01:intron 25.0%
!!! TGTTAGTATTTTTTCCTTCA+CGG - Chr4:69307877-69307896 MsG0480022176.01.T01:intron 25.0%
!!! TTTATTTTTCCTCTTGAACT+GGG + Chr4:69308208-69308227 None:intergenic 25.0%
!!! TTTTAGGATATTATTCCAGT+TGG + Chr4:69309407-69309426 None:intergenic 25.0%
AAAATGAGTTTCAGCTAAGA+GGG + Chr4:69308112-69308131 None:intergenic 30.0%
AAACATCTTGGACATACATT+AGG + Chr4:69307206-69307225 None:intergenic 30.0%
AAACTGTAAAGAACCATCTT+AGG - Chr4:69306981-69307000 MsG0480022176.01.T01:intron 30.0%
AACTTAAAAACTCCCAAAGT+TGG - Chr4:69307359-69307378 MsG0480022176.01.T01:intron 30.0%
AATGTTAAGATTGAAAGAGG+TGG + Chr4:69307600-69307619 None:intergenic 30.0%
AATTGGAGAAAATAGCAGAA+AGG + Chr4:69306439-69306458 None:intergenic 30.0%
ACATCTCAAACATCTTCTTA+CGG - Chr4:69307949-69307968 MsG0480022176.01.T01:intron 30.0%
ACCAATCCATAATGAAAAGA+TGG + Chr4:69309246-69309265 None:intergenic 30.0%
AGCAATTTGAACAAAAAAGC+GGG + Chr4:69306507-69306526 None:intergenic 30.0%
AGGATAATCATTAAAGCAGA+AGG + Chr4:69308962-69308981 None:intergenic 30.0%
ATTAATCAGAATCCTGAGTA+TGG + Chr4:69308292-69308311 None:intergenic 30.0%
CAAACAATAGATATCCAAAG+AGG - Chr4:69308451-69308470 MsG0480022176.01.T01:intron 30.0%
CAAGGAGAAAAAAAAAGGAA+AGG + Chr4:69308619-69308638 None:intergenic 30.0%
CAATAACCATATGTATCGTA+AGG - Chr4:69308012-69308031 MsG0480022176.01.T01:intron 30.0%
CTCTTTGGATATCTATTGTT+TGG + Chr4:69308453-69308472 None:intergenic 30.0%
CTTACGATACATATGGTTAT+TGG + Chr4:69308014-69308033 None:intergenic 30.0%
GAAGTGAATACTTCAATATG+TGG - Chr4:69309376-69309395 MsG0480022176.01.T01:CDS 30.0%
GAGCAATTTGAACAAAAAAG+CGG + Chr4:69306508-69306527 None:intergenic 30.0%
GTTAAATCACAAACCTAAGA+TGG + Chr4:69306997-69307016 None:intergenic 30.0%
TAAAATGAGTTTCAGCTAAG+AGG + Chr4:69308113-69308132 None:intergenic 30.0%
TAAAGATGCCAAAAATTGTC+AGG + Chr4:69307483-69307502 None:intergenic 30.0%
TAATGTTCAAAGATCCTACA+TGG + Chr4:69307019-69307038 None:intergenic 30.0%
TATAACAACTTCAAGTCGAT+TGG + Chr4:69308371-69308390 None:intergenic 30.0%
TGGACATACATTAGGAATTT+AGG + Chr4:69307198-69307217 None:intergenic 30.0%
TGGTCAATCAACTTCTATAT+TGG - Chr4:69307715-69307734 MsG0480022176.01.T01:intron 30.0%
TTAAAAAAGAGTAACCAACC+TGG + Chr4:69306471-69306490 None:intergenic 30.0%
TTAATTATATTGTGAGGCTG+AGG + Chr4:69306298-69306317 None:intergenic 30.0%
TTGTACAAACTAGAAAGTAG+TGG - Chr4:69306590-69306609 MsG0480022176.01.T01:intron 30.0%
! AGCAATGTCTTTTACCTTTA+TGG + Chr4:69306230-69306249 None:intergenic 30.0%
! ATATAGAAGTTGATTGACCA+AGG + Chr4:69307715-69307734 None:intergenic 30.0%
! GATGTTTGAGATGTAAACTA+AGG + Chr4:69307943-69307962 None:intergenic 30.0%
! TCCATCTTTTCATTATGGAT+TGG - Chr4:69309242-69309261 MsG0480022176.01.T01:intron 30.0%
! TCTCTTCCATCTTTTCATTA+TGG - Chr4:69309237-69309256 MsG0480022176.01.T01:CDS 30.0%
! TCTTTTCGAATTTGTGTAGA+CGG - Chr4:69308729-69308748 MsG0480022176.01.T01:intron 30.0%
! TTGAAGTATTCACTTCTATG+AGG + Chr4:69309372-69309391 None:intergenic 30.0%
! TTGTTTTCACTATAAAGCAG+GGG + Chr4:69307549-69307568 None:intergenic 30.0%
!! AGTCAAGTTTTTCAACAACT+TGG - Chr4:69306395-69306414 MsG0480022176.01.T01:CDS 30.0%
!! GAAAAAATTAAGGAGCATTG+TGG - Chr4:69307157-69307176 MsG0480022176.01.T01:intron 30.0%
!! GTTGTTTTCACTATAAAGCA+GGG + Chr4:69307550-69307569 None:intergenic 30.0%
!!! GGAAACATCATTTTGTTTTG+AGG - Chr4:69307235-69307254 MsG0480022176.01.T01:intron 30.0%
AAATAAGAGTGAATGGCATG+GGG + Chr4:69306537-69306556 None:intergenic 35.0%
ACAAATAAGAGTGAATGGCA+TGG + Chr4:69306539-69306558 None:intergenic 35.0%
ACCCACATAAATAGATTGCA+GGG + Chr4:69307795-69307814 None:intergenic 35.0%
AGCCCAACTAATTTGGTATT+GGG + Chr4:69306675-69306694 None:intergenic 35.0%
AGCTAGATATATCATGCCAA+AGG + Chr4:69308554-69308573 None:intergenic 35.0%
ATTAAATTGAAGGGAGGACA+AGG + Chr4:69307090-69307109 None:intergenic 35.0%
ATTACAGGATAACGTGAAAC+GGG - Chr4:69306329-69306348 MsG0480022176.01.T01:three_prime_UTR 35.0%
CAAATAAGAGTGAATGGCAT+GGG + Chr4:69306538-69306557 None:intergenic 35.0%
CAAATAGTCATGAGCATGTA+AGG - Chr4:69308240-69308259 MsG0480022176.01.T01:intron 35.0%
CAATAATCCTGTCTCCATAA+AGG - Chr4:69306213-69306232 MsG0480022176.01.T01:three_prime_UTR 35.0%
CCAAAAATTGTCAGGATCAA+AGG + Chr4:69307475-69307494 None:intergenic 35.0%
CCATAAGGCATAAACTATGA+AGG + Chr4:69308982-69309001 None:intergenic 35.0%
CCTTCATAGTTTATGCCTTA+TGG - Chr4:69308979-69308998 MsG0480022176.01.T01:intron 35.0%
CTAGATATATCATGCCAAAG+GGG + Chr4:69308552-69308571 None:intergenic 35.0%
CTTACATGCTCATGACTATT+TGG + Chr4:69308242-69308261 None:intergenic 35.0%
CTTACTTAGACTTCAGACAT+AGG - Chr4:69308929-69308948 MsG0480022176.01.T01:intron 35.0%
GATTACAGGATAACGTGAAA+CGG - Chr4:69306328-69306347 MsG0480022176.01.T01:three_prime_UTR 35.0%
GCAAGTAGCAAGTGATAAAT+AGG - Chr4:69308313-69308332 MsG0480022176.01.T01:intron 35.0%
GCAATTTGAACAAAAAAGCG+GGG + Chr4:69306506-69306525 None:intergenic 35.0%
GCTAGATATATCATGCCAAA+GGG + Chr4:69308553-69308572 None:intergenic 35.0%
GGTTCTCATTACAGTGTTAA+TGG - Chr4:69307623-69307642 MsG0480022176.01.T01:intron 35.0%
GGTTTGTGATTTAACCATGT+AGG - Chr4:69307002-69307021 MsG0480022176.01.T01:intron 35.0%
GTCATGATACCAAATACCAT+TGG + Chr4:69307408-69307427 None:intergenic 35.0%
GTCTAAGTAAGACATCTTAC+CGG + Chr4:69308920-69308939 None:intergenic 35.0%
GTGTAACTCAAAGTAATGCA+AGG - Chr4:69306949-69306968 MsG0480022176.01.T01:intron 35.0%
TAAACAAGGAAATTCCGTGA+AGG + Chr4:69307894-69307913 None:intergenic 35.0%
TAGCCCAACTAATTTGGTAT+TGG + Chr4:69306676-69306695 None:intergenic 35.0%
TCAAGTTACAGGCTGATAAA+GGG - Chr4:69309168-69309187 MsG0480022176.01.T01:CDS 35.0%
TCCAAGATGTTTGTAAGTTC+AGG - Chr4:69307214-69307233 MsG0480022176.01.T01:intron 35.0%
TCCCTGCAATCTATTTATGT+GGG - Chr4:69307791-69307810 MsG0480022176.01.T01:intron 35.0%
TCCTGAACTTACAAACATCT+TGG + Chr4:69307218-69307237 None:intergenic 35.0%
TGAAGATATCATCATACCCA+AGG + Chr4:69308066-69308085 None:intergenic 35.0%
TGGGTATGATGATATCTTCA+AGG - Chr4:69308066-69308085 MsG0480022176.01.T01:intron 35.0%
TTGACTGTGTGAACTAAACA+AGG + Chr4:69307908-69307927 None:intergenic 35.0%
TTGTTCAGCCAAACATGTAT+TGG - Chr4:69308481-69308500 MsG0480022176.01.T01:intron 35.0%
! AAAAACTCCCAAAGTTGGTT+CGG - Chr4:69307364-69307383 MsG0480022176.01.T01:intron 35.0%
! ATAGACTAGCCCAACTAATT+TGG + Chr4:69306682-69306701 None:intergenic 35.0%
! CAAGCAAACTTCTGCATTTT+AGG + Chr4:69309423-69309442 None:intergenic 35.0%
! CCTTTGATCCTGACAATTTT+TGG - Chr4:69307472-69307491 MsG0480022176.01.T01:intron 35.0%
! CTAAAATGCAGAAGTTTGCT+TGG - Chr4:69309421-69309440 MsG0480022176.01.T01:five_prime_UTR 35.0%
! TCTTTTACCTTTATGGAGAC+AGG + Chr4:69306223-69306242 None:intergenic 35.0%
! TGTTTTCACTATAAAGCAGG+GGG + Chr4:69307548-69307567 None:intergenic 35.0%
! TTTTGTTCGGTTTCAATGCT+TGG + Chr4:69309197-69309216 None:intergenic 35.0%
!! GGTTGTTTTCACTATAAAGC+AGG + Chr4:69307551-69307570 None:intergenic 35.0%
!! TTAGTCTTGGTCTGTTTCAA+TGG - Chr4:69307327-69307346 MsG0480022176.01.T01:intron 35.0%
!!! CCTTTTTTTTTCTCCTTGCA+GGG - Chr4:69308621-69308640 MsG0480022176.01.T01:intron 35.0%
!!! CGCTTTTAATTTCTTGAGTG+TGG - Chr4:69306255-69306274 MsG0480022176.01.T01:three_prime_UTR 35.0%
!!! CTTTTTTTTTCTCCTTGCAG+GGG - Chr4:69308622-69308641 MsG0480022176.01.T01:intron 35.0%
!!! TCCTTTTTTTTTCTCCTTGC+AGG - Chr4:69308620-69308639 MsG0480022176.01.T01:intron 35.0%
AAGCCACGAACAAGACTTTA+AGG + Chr4:69307746-69307765 None:intergenic 40.0%
AATAGCTAACTAGCTAAGCG+AGG + Chr4:69308143-69308162 None:intergenic 40.0%
AATGAAACTCAGACCTAGAG+AGG + Chr4:69306650-69306669 None:intergenic 40.0%
AGATTGCAGGGACAAATACT+TGG + Chr4:69307783-69307802 None:intergenic 40.0%
ATAGCTAACTAGCTAAGCGA+GGG + Chr4:69308142-69308161 None:intergenic 40.0%
CAATATGTGGAAGTTCCAAC+TGG - Chr4:69309389-69309408 MsG0480022176.01.T01:CDS 40.0%
CCCCCAATACCAAATTAGTT+GGG - Chr4:69306670-69306689 MsG0480022176.01.T01:intron 40.0%
CCCTGCAAGGAGAAAAAAAA+AGG + Chr4:69308624-69308643 None:intergenic 40.0%
CCTAAGCTTAGCTAACCATA+AGG + Chr4:69308997-69309016 None:intergenic 40.0%
CGTGACATCCAATACATGTT+TGG + Chr4:69308492-69308511 None:intergenic 40.0%
CTCTCAATCAATCAGCATCA+GGG + Chr4:69307978-69307997 None:intergenic 40.0%
CTGATGAGTTAGCAAACCTT+GGG - Chr4:69308047-69308066 MsG0480022176.01.T01:intron 40.0%
CTTGAATTATGCACCTCTCT+AGG - Chr4:69306634-69306653 MsG0480022176.01.T01:intron 40.0%
GACCCACATAAATAGATTGC+AGG + Chr4:69307796-69307815 None:intergenic 40.0%
GCCCAACTAATTTGGTATTG+GGG + Chr4:69306674-69306693 None:intergenic 40.0%
GTAACGTGACTATGGATTTG+TGG - Chr4:69307262-69307281 MsG0480022176.01.T01:intron 40.0%
GTCAAGTTACAGGCTGATAA+AGG - Chr4:69309167-69309186 MsG0480022176.01.T01:CDS 40.0%
GTCCCTGCAATCTATTTATG+TGG - Chr4:69307790-69307809 MsG0480022176.01.T01:intron 40.0%
TAAAACTCAGTATCCGGCTA+AGG + Chr4:69306769-69306788 None:intergenic 40.0%
TAAGGACTGACTAATCCGAA+GGG + Chr4:69306751-69306770 None:intergenic 40.0%
TAAGGCCTCTACAAGCTAAA+AGG + Chr4:69307649-69307668 None:intergenic 40.0%
TAGACAAGATCTCCATACTC+AGG - Chr4:69308277-69308296 MsG0480022176.01.T01:intron 40.0%
TCAGACAAGCAAGCTTCATT+TGG + Chr4:69306183-69306202 None:intergenic 40.0%
TCCCCCAATACCAAATTAGT+TGG - Chr4:69306669-69306688 MsG0480022176.01.T01:intron 40.0%
TCTCTCAATCAATCAGCATC+AGG + Chr4:69307979-69307998 None:intergenic 40.0%
TGAACAATGTTGCTCCTCTT+TGG + Chr4:69308468-69308487 None:intergenic 40.0%
TGTTCGCCTTACGATACATA+TGG + Chr4:69308021-69308040 None:intergenic 40.0%
TTGGAAAATCCCAGTTCAAG+AGG - Chr4:69308196-69308215 MsG0480022176.01.T01:intron 40.0%
! AAGCTTGCTTGTCTGATTTC+TGG - Chr4:69306187-69306206 MsG0480022176.01.T01:three_prime_UTR 40.0%
! AGTCATGTATAGTTCTACGC+AGG - Chr4:69309058-69309077 MsG0480022176.01.T01:intron 40.0%
! CCCAACTAATTTGGTATTGG+GGG + Chr4:69306673-69306692 None:intergenic 40.0%
! CCTTATGGTTAGCTAAGCTT+AGG - Chr4:69308994-69309013 MsG0480022176.01.T01:intron 40.0%
! CTAGAGAGGTGCATAATTCA+AGG + Chr4:69306636-69306655 None:intergenic 40.0%
! GCTTTTGCAACAGATGTTGA+TGG + Chr4:69307526-69307545 None:intergenic 40.0%
! GTCATGTATAGTTCTACGCA+GGG - Chr4:69309059-69309078 MsG0480022176.01.T01:intron 40.0%
! TCATGTATAGTTCTACGCAG+GGG - Chr4:69309060-69309079 MsG0480022176.01.T01:intron 40.0%
! TGCTGATTGATTGAGAGAGA+CGG - Chr4:69307981-69308000 MsG0480022176.01.T01:intron 40.0%
!! ACGAACAAGACTTTAAGGCT+CGG + Chr4:69307741-69307760 None:intergenic 40.0%
!!! AATGGCCTTTTAGCTTGTAG+AGG - Chr4:69307641-69307660 MsG0480022176.01.T01:intron 40.0%
!!! TCTGAGGGTCGTTTTATTTG+TGG - Chr4:69307677-69307696 MsG0480022176.01.T01:intron 40.0%
AAAACGACCCTCAGAATCCT+TGG + Chr4:69307672-69307691 None:intergenic 45.0%
AAAGAGTAACCAACCTGGAG+TGG + Chr4:69306466-69306485 None:intergenic 45.0%
AATTTGGCCAGGGGAAAGTT+TGG + Chr4:69307129-69307148 None:intergenic 45.0%
AGTTACAGGCTGATAAAGGG+TGG - Chr4:69309171-69309190 MsG0480022176.01.T01:CDS 45.0%
ATCTACCGTGTCACGTACTA+TGG - Chr4:69308881-69308900 MsG0480022176.01.T01:intron 45.0%
ATTTGGCCAGGGGAAAGTTT+GGG + Chr4:69307128-69307147 None:intergenic 45.0%
CAGGGACAAATACTTGGTTC+TGG + Chr4:69307777-69307796 None:intergenic 45.0%
CTAAGGACTGACTAATCCGA+AGG + Chr4:69306752-69306771 None:intergenic 45.0%
CTATGGCAAAGGAAGAATGC+CGG - Chr4:69308898-69308917 MsG0480022176.01.T01:intron 45.0%
CTTTGCCATAGTACGTGACA+CGG + Chr4:69308889-69308908 None:intergenic 45.0%
GAGGGATTGTAACGTGACTA+TGG - Chr4:69307254-69307273 MsG0480022176.01.T01:intron 45.0%
GATCCATCCGAACCAACTTT+GGG + Chr4:69307374-69307393 None:intergenic 45.0%
GCTGATGAGTTAGCAAACCT+TGG - Chr4:69308046-69308065 MsG0480022176.01.T01:intron 45.0%
GGCTGAGTTTGTCAAGTTAC+AGG - Chr4:69309157-69309176 MsG0480022176.01.T01:CDS 45.0%
GGGGTCAACTCTATTCACAA+AGG - Chr4:69308641-69308660 MsG0480022176.01.T01:intron 45.0%
GGTGCATAATTCAAGGTCAC+AGG + Chr4:69306629-69306648 None:intergenic 45.0%
TCAACGAGTCAATTTGGCCA+GGG + Chr4:69307139-69307158 None:intergenic 45.0%
TGATCCATCCGAACCAACTT+TGG + Chr4:69307375-69307394 None:intergenic 45.0%
TGTATTGGATGTCACGATGC+AGG - Chr4:69308496-69308515 MsG0480022176.01.T01:intron 45.0%
TGTGGCTTCGTTTGTATCCT+TGG - Chr4:69307695-69307714 MsG0480022176.01.T01:intron 45.0%
TTCAACGAGTCAATTTGGCC+AGG + Chr4:69307140-69307159 None:intergenic 45.0%
! TATAGTTCTACGCAGGGGTT+TGG - Chr4:69309065-69309084 MsG0480022176.01.T01:intron 45.0%
! TTTACACAGCCAGCTTGCTT+TGG - Chr4:69307499-69307518 MsG0480022176.01.T01:intron 45.0%
!! GAGCCTTAAAGTCTTGTTCG+TGG - Chr4:69307740-69307759 MsG0480022176.01.T01:intron 45.0%
!! TGGCATTGGCCAATGGTATT+TGG - Chr4:69307396-69307415 MsG0480022176.01.T01:intron 45.0%
AGCTTGTAGAGGCCTTACCA+AGG - Chr4:69307652-69307671 MsG0480022176.01.T01:intron 50.0%
AGGCCTTACCAAGGATTCTG+AGG - Chr4:69307661-69307680 MsG0480022176.01.T01:intron 50.0%
ATTGGATGTCACGATGCAGG+TGG - Chr4:69308499-69308518 MsG0480022176.01.T01:intron 50.0%
CAACGAGTCAATTTGGCCAG+GGG + Chr4:69307138-69307157 None:intergenic 50.0%
CCAAAGGGGATGATGCTTAC+TGG + Chr4:69308538-69308557 None:intergenic 50.0%
CCAGTAAGCATCATCCCCTT+TGG - Chr4:69308535-69308554 MsG0480022176.01.T01:intron 50.0%
CGTGTCACGTACTATGGCAA+AGG - Chr4:69308887-69308906 MsG0480022176.01.T01:intron 50.0%
GAATAGAGTTGACCCCTGCA+AGG + Chr4:69308637-69308656 None:intergenic 50.0%
GACCCTCAGAATCCTTGGTA+AGG + Chr4:69307667-69307686 None:intergenic 50.0%
GGCCTTACCAAGGATTCTGA+GGG - Chr4:69307662-69307681 MsG0480022176.01.T01:intron 50.0%
TCTCATTGTGCTGCACAGAC+TGG + Chr4:69307053-69307072 None:intergenic 50.0%
TTCGGATGGATCAGTGGCAT+TGG - Chr4:69307382-69307401 MsG0480022176.01.T01:intron 50.0%
TTTGGCCAGGGGAAAGTTTG+GGG + Chr4:69307127-69307146 None:intergenic 50.0%
! GTAAAGAGTGCATGCCACGA+GGG - Chr4:69309087-69309106 MsG0480022176.01.T01:intron 50.0%
! GTTGATGGACCAAAGCAAGC+TGG + Chr4:69307511-69307530 None:intergenic 50.0%
!! ACTCCCAAAGTTGGTTCGGA+TGG - Chr4:69307368-69307387 MsG0480022176.01.T01:intron 50.0%
!! AGTTGGTTCGGATGGATCAG+TGG - Chr4:69307376-69307395 MsG0480022176.01.T01:intron 50.0%
!! CGGATTAGTCAGTCCTTAGC+CGG - Chr4:69306753-69306772 MsG0480022176.01.T01:intron 50.0%
!! GTGCACATTTGGTGCTCGTT+TGG - Chr4:69309112-69309131 MsG0480022176.01.T01:intron 50.0%
AATCCCACCGTCCACTTGTG+GGG + Chr4:69306725-69306744 None:intergenic 55.0%
ATTGAATGGGCCCCCACAAG+TGG - Chr4:69306711-69306730 MsG0480022176.01.T01:CDS 55.0%
CAACCTGGAGTGGCGCAAAT+TGG + Chr4:69306456-69306475 None:intergenic 55.0%
CAACTTGGCTCCTCCTCTTG+CGG - Chr4:69306410-69306429 MsG0480022176.01.T01:CDS 55.0%
CAATCCCACCGTCCACTTGT+GGG + Chr4:69306726-69306745 None:intergenic 55.0%
CAATTTGCGCCACTCCAGGT+TGG - Chr4:69306454-69306473 MsG0480022176.01.T01:CDS 55.0%
GTAAGCCCCAAACTTTCCCC+TGG - Chr4:69307119-69307138 MsG0480022176.01.T01:CDS 55.0%
TCTCCAATTTGCGCCACTCC+AGG - Chr4:69306450-69306469 MsG0480022176.01.T01:CDS 55.0%
! GGTAAAGAGTGCATGCCACG+AGG - Chr4:69309086-69309105 MsG0480022176.01.T01:intron 55.0%
!! GGATCAGTGGCATTGGCCAA+TGG - Chr4:69307389-69307408 MsG0480022176.01.T01:intron 55.0%
AATGGGCCCCCACAAGTGGA+CGG - Chr4:69306715-69306734 MsG0480022176.01.T01:CDS 60.0%
AGAAAGGCAGCCGCAAGAGG+AGG + Chr4:69306423-69306442 None:intergenic 60.0%
AGCAGAAAGGCAGCCGCAAG+AGG + Chr4:69306426-69306445 None:intergenic 60.0%
ATCCCACCGTCCACTTGTGG+GGG + Chr4:69306724-69306743 None:intergenic 60.0%
CCAAATGTGCACTGCCCTCG+TGG + Chr4:69309104-69309123 None:intergenic 60.0%
CCAATCCCACCGTCCACTTG+TGG + Chr4:69306727-69306746 None:intergenic 60.0%
CCACAAGTGGACGGTGGGAT+TGG - Chr4:69306724-69306743 MsG0480022176.01.T01:intron 60.0%
CCACGAGGGCAGTGCACATT+TGG - Chr4:69309101-69309120 MsG0480022176.01.T01:intron 60.0%
GACGGTGGGATTGGACCCTT+CGG - Chr4:69306733-69306752 MsG0480022176.01.T01:intron 60.0%
GGCCCCCACAAGTGGACGGT+GGG - Chr4:69306719-69306738 MsG0480022176.01.T01:CDS 70.0%
GGGCCCCCACAAGTGGACGG+TGG - Chr4:69306718-69306737 MsG0480022176.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 69306153 69309443 69306153 ID=MsG0480022176.01;Name=MsG0480022176.01
Chr4 mRNA 69306153 69309443 69306153 ID=MsG0480022176.01.T01;Parent=MsG0480022176.01;Name=MsG0480022176.01.T01;_AED=0.49;_eAED=0.49;_QI=31|1|1|1|0.4|0.5|6|223|173
Chr4 exon 69306153 69306516 69306153 ID=MsG0480022176.01.T01:exon:55531;Parent=MsG0480022176.01.T01
Chr4 exon 69306677 69306740 69306677 ID=MsG0480022176.01.T01:exon:55530;Parent=MsG0480022176.01.T01
Chr4 exon 69306923 69306954 69306923 ID=MsG0480022176.01.T01:exon:55529;Parent=MsG0480022176.01.T01
Chr4 exon 69307059 69307156 69307059 ID=MsG0480022176.01.T01:exon:55528;Parent=MsG0480022176.01.T01
Chr4 exon 69309125 69309260 69309125 ID=MsG0480022176.01.T01:exon:55527;Parent=MsG0480022176.01.T01
Chr4 exon 69309362 69309443 69309362 ID=MsG0480022176.01.T01:exon:55526;Parent=MsG0480022176.01.T01
Chr4 five_prime_UTR 69309413 69309443 69309413 ID=MsG0480022176.01.T01:five_prime_utr;Parent=MsG0480022176.01.T01
Chr4 CDS 69309362 69309412 69309362 ID=MsG0480022176.01.T01:cds;Parent=MsG0480022176.01.T01
Chr4 CDS 69309125 69309260 69309125 ID=MsG0480022176.01.T01:cds;Parent=MsG0480022176.01.T01
Chr4 CDS 69307059 69307156 69307059 ID=MsG0480022176.01.T01:cds;Parent=MsG0480022176.01.T01
Chr4 CDS 69306923 69306954 69306923 ID=MsG0480022176.01.T01:cds;Parent=MsG0480022176.01.T01
Chr4 CDS 69306677 69306740 69306677 ID=MsG0480022176.01.T01:cds;Parent=MsG0480022176.01.T01
Chr4 CDS 69306376 69306516 69306376 ID=MsG0480022176.01.T01:cds;Parent=MsG0480022176.01.T01
Chr4 three_prime_UTR 69306153 69306375 69306153 ID=MsG0480022176.01.T01:three_prime_utr;Parent=MsG0480022176.01.T01
Gene Sequence

>MsG0480022176.01.T01

ATGAAGCTTGCTTGTCTGATTTCTGGTTACAATAATCCTGTCTCCATAAAGGATAACGTGAAACGGGAAGAGAAGCATGTGAAGCTCATTCATACTAAGACAAAACAACAAGTCAAGTTTTTCAACAACTTGGCTCCTCCTCTTGCGGCTGCCTTTCTGCTATTTTCTCCAATTTGCGCCACTCCAGTTTCAATTGCCCAAACAATAGATATCCAAAGAGGAGCAACATTGTTCAGCCAAACATGTATTGGATGTCACGATGCAGGTGGAAACATTATACAGCCAGGGTCAACTCTATTCACAAAGGATTTACAAAGAAATGGAGTTGATACAGAAGAAGAAATCTACCGTGTCACGTACTATGGCAAAGGAAGAATGCCGGGGTTTGGTAAAGAGTGCATGCCACGAGGGCAGTGCACATTTGGTGCTCGTTTGGAAGATGAAGATATCAAGATATTGGCTGAGTTTGTCAAGTTACAGGCTGATAAAGGGTGGCCAAGCATTGAAACCGAACAAAAATGA

Protein sequence

>MsG0480022176.01.T01

MKLACLISGYNNPVSIKDNVKREEKHVKLIHTKTKQQVKFFNNLAPPLAAAFLLFSPICATPVSIAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGWPSIETEQK*