AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038381.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038381.01.T01 MTR_7g053090 54.983 291 68 8 104 331 126 416 1.04e-77 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038381.01.T01 AT3G25410 45.683 278 88 7 104 318 141 418 4.00e-57 191

Find 80 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCTTCACCTTAGGATAT+TGG 0.236729 7:+45489089 MsG0780038381.01.T01:CDS
GAAGTACAAATCAAGCAAAA+AGG 0.294616 7:-45488972 None:intergenic
AAGCCTGCATAAAACATTCT+AGG 0.315629 7:-45488415 None:intergenic
ATGCAGAGCTCCACACTTGC+AGG 0.326442 7:+45490244 MsG0780038381.01.T01:CDS
ACTTATCGTTTCTCATTTGT+TGG 0.326589 7:+45490441 MsG0780038381.01.T01:exon
CCATGTCAAAGTCATATTAC+AGG 0.351006 7:+45488614 MsG0780038381.01.T01:CDS
GTGTTGATTGCAAAGGCTTT+TGG 0.352496 7:+45488389 MsG0780038381.01.T01:CDS
TGTTGTAGCCATGGCTATAA+TGG 0.352603 7:+45490321 MsG0780038381.01.T01:CDS
CATGCTGCTGCCTTCACCTT+AGG 0.359179 7:+45489082 MsG0780038381.01.T01:CDS
TTTCAAGTGTATAGGTTAGT+TGG 0.369531 7:+45490538 MsG0780038381.01.T01:three_prime_UTR
CCATTGGATAGGACTATCTA+TGG 0.381214 7:+45488186 MsG0780038381.01.T01:CDS
GCAGCATGAAATATTAATAC+TGG 0.392284 7:-45489067 None:intergenic
GGACAATGAATTTAATATAG+TGG 0.410351 7:+45490472 MsG0780038381.01.T01:three_prime_UTR
GTTGGTGGTGGTGGTGATGT+TGG 0.410444 7:+45487100 MsG0780038381.01.T01:CDS
AATGTTGTTGTTGGTGGTGG+TGG 0.419406 7:+45487091 None:intergenic
AACATAATCCCACCAAGTGC+TGG 0.429242 7:-45488161 None:intergenic
TGTTGATGAAATGTTGTTGT+TGG 0.429301 7:+45487082 None:intergenic
GTTGTAGCCATGGCTATAAT+GGG 0.430006 7:+45490322 MsG0780038381.01.T01:CDS
GCAGTAACAGCAACAACAAA+AGG 0.435076 7:-45487161 None:intergenic
GGCAGGAAGAACAGGTGAGC+AGG 0.444537 7:+45490200 MsG0780038381.01.T01:intron
TTGTCACAGGCAGGAAGAAC+AGG 0.451789 7:+45490192 MsG0780038381.01.T01:intron
TGATGAAATGTTGTTGTTGG+TGG 0.458963 7:+45487085 None:intergenic
TGAAATGTTGTTGTTGGTGG+TGG 0.468376 7:+45487088 None:intergenic
AGGCCTTTGCCACTTTCCAT+TGG 0.475623 7:+45488329 MsG0780038381.01.T01:intron
TCTCATTTGTTGGCATTCGT+TGG 0.481508 7:+45490451 MsG0780038381.01.T01:three_prime_UTR
CGCCTGACAAAATTTGACTT+CGG 0.484249 7:-45489025 None:intergenic
TATATCAGGCCCCTCTGCTA+TGG 0.486332 7:+45487729 MsG0780038381.01.T01:intron
GTTGTTGCTCCGGTGACACT+TGG 0.498721 7:+45488894 MsG0780038381.01.T01:CDS
CAGAGATGGCTAGGAAATGT+AGG 0.501301 7:+45490504 MsG0780038381.01.T01:three_prime_UTR
CTGACTATTTGAACGCAGGC+AGG 0.501974 7:+45487887 MsG0780038381.01.T01:CDS
GATTATGTTGTCCATTGGAT+AGG 0.504760 7:+45488175 MsG0780038381.01.T01:CDS
AAGTGTGGAGCTCTGCATTC+CGG 0.505559 7:-45490239 None:intergenic
TTAGGCCTCAAAAGCAGAAT+CGG 0.509487 7:-45490419 None:intergenic
GTCAGGCGAAGGTCTTCGAT+TGG 0.511001 7:+45489040 MsG0780038381.01.T01:CDS
GTGAAGGTAATGATGACAAC+AGG 0.512253 7:-45490390 None:intergenic
CAAATGAGAAACGATAAGTT+AGG 0.512714 7:-45490437 None:intergenic
TGCAAGAAGGCCTGCAAGTG+TGG 0.515778 7:-45490254 None:intergenic
TGCATGTTCTGTTGTAGCCA+TGG 0.517184 7:+45490312 MsG0780038381.01.T01:CDS
GGTCGAAGAATAGATACAAA+TGG 0.518010 7:-45488941 None:intergenic
GCAATCAACACACCAAGTAC+AGG 0.525650 7:-45488377 None:intergenic
ATTTGTACTTCATTGTGCAT+TGG 0.527468 7:+45488984 MsG0780038381.01.T01:CDS
GGTGGGATTATGTTGTCCAT+TGG 0.529635 7:+45488170 MsG0780038381.01.T01:CDS
GGAACCCCACCAAGTAAAAG+TGG 0.532912 7:-45487207 None:intergenic
GTGATGTTGGTGAAAGAGAT+TGG 0.536602 7:+45487113 MsG0780038381.01.T01:CDS
ACTTGGTGTGTTGATTGCAA+AGG 0.540051 7:+45488382 MsG0780038381.01.T01:CDS
GTTATATGCCCAGCACTTGG+TGG 0.543455 7:+45488152 MsG0780038381.01.T01:CDS
GCAATAAATCCAATGGAAAG+TGG 0.553333 7:-45488338 None:intergenic
AGTCGCACATCTGTGACCGC+TGG 0.554314 7:+45487790 MsG0780038381.01.T01:CDS
TATGTACTGAAACCTGTACT+TGG 0.557862 7:+45488365 MsG0780038381.01.T01:CDS
AGAAGAAGACCAAGTGTCAC+CGG 0.559865 7:-45488903 None:intergenic
TACTAATATCAGAGATGGCT+AGG 0.561824 7:+45490495 MsG0780038381.01.T01:three_prime_UTR
ACATAATCCCACCAAGTGCT+GGG 0.572630 7:-45488160 None:intergenic
AGGACAATTTCATTATGCAC+CGG 0.579651 7:+45490220 MsG0780038381.01.T01:CDS
TGACTTCGGTTTATAGCAAG+AGG 0.580840 7:-45489011 None:intergenic
ATATTGAGCAATAAATCCAA+TGG 0.589160 7:-45488345 None:intergenic
AGTGGTACTAATATCAGAGA+TGG 0.590087 7:+45490490 MsG0780038381.01.T01:three_prime_UTR
GTTTGAGAACCAATATCCTA+AGG 0.590940 7:-45489098 None:intergenic
GCAACAACAAAAGGAAGCAA+TGG 0.591393 7:-45487152 None:intergenic
GTATTCATTTCCATAGCAGA+GGG 0.592901 7:-45487739 None:intergenic
AGAGTTATATGCCCAGCACT+TGG 0.594254 7:+45488149 MsG0780038381.01.T01:intron
TAGTAGCAAGTCTATGTACA+AGG 0.596487 7:-45490674 None:intergenic
TTATATGCCCAGCACTTGGT+GGG 0.598006 7:+45488153 MsG0780038381.01.T01:CDS
AATCCAATGGAAAGTGGCAA+AGG 0.598051 7:-45488332 None:intergenic
GCAGAATCGGTTCTGAGTGA+AGG 0.602984 7:-45490406 None:intergenic
TGTATTCATTTCCATAGCAG+AGG 0.608636 7:-45487740 None:intergenic
AACATCTAATCTTGATCCAG+CGG 0.608714 7:-45487806 None:intergenic
CCTGTAATATGACTTTGACA+TGG 0.610393 7:-45488614 None:intergenic
GAACCAATATCCTAAGGTGA+AGG 0.613291 7:-45489092 None:intergenic
ACAGAGACCCATTATAGCCA+TGG 0.620465 7:-45490329 None:intergenic
CCATAGATAGTCCTATCCAA+TGG 0.629108 7:-45488186 None:intergenic
CCCCACCAAGTAAAAGTGGA+AGG 0.630594 7:-45487203 None:intergenic
GACTTCGGTTTATAGCAAGA+GGG 0.640397 7:-45489010 None:intergenic
TGACTATTTGAACGCAGGCA+GGG 0.640929 7:+45487888 MsG0780038381.01.T01:CDS
ATGGCTACAACAGAACATGC+AGG 0.649051 7:-45490310 None:intergenic
TGTGCTGACTATTTGAACGC+AGG 0.661181 7:+45487883 MsG0780038381.01.T01:CDS
CTCCTGAAACACAAGCTGTG+AGG 0.689260 7:-45488441 None:intergenic
TAACACTGTATACACGACCA+AGG 0.698470 7:+45490576 MsG0780038381.01.T01:three_prime_UTR
GCTACAACAGAACATGCAGG+AGG 0.738196 7:-45490307 None:intergenic
TATTCATTTCCATAGCAGAG+GGG 0.747093 7:-45487738 None:intergenic
AAAATGTATTCATTGTAACG+CGG 0.769348 7:+45490599 MsG0780038381.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAGTAGAAAATAAAATA+CGG - Chr7:45490139-45490158 None:intergenic 10.0%
!! ATTATATTTAGAAAAAAAAG+GGG + Chr7:45489742-45489761 MsG0780038381.01.T01:intron 10.0%
!! CAATTATATTTAGAAAAAAA+AGG + Chr7:45489740-45489759 MsG0780038381.01.T01:intron 10.0%
!!! AAAAAAAGTATAATAACTTT+AGG - Chr7:45487977-45487996 None:intergenic 10.0%
!!! ATTAATTAATACTTGTTTTA+AGG + Chr7:45487269-45487288 MsG0780038381.01.T01:intron 10.0%
!!! TAAGTAAATTTTACTTTTTT+AGG - Chr7:45487687-45487706 None:intergenic 10.0%
!! AAAAATATATACTTTCCATA+AGG + Chr7:45489492-45489511 MsG0780038381.01.T01:intron 15.0%
!! AAATTTACTTATAATTGAGA+AGG + Chr7:45487696-45487715 MsG0780038381.01.T01:intron 15.0%
!! AATTTACTTATAATTGAGAA+GGG + Chr7:45487697-45487716 MsG0780038381.01.T01:intron 15.0%
!! ATACATATAAACTAAACAAA+AGG - Chr7:45487367-45487386 None:intergenic 15.0%
!! ATATATATAATTGTTCCTTA+TGG - Chr7:45489510-45489529 None:intergenic 15.0%
!! TACATATAAACTAAACAAAA+GGG - Chr7:45487366-45487385 None:intergenic 15.0%
!!! ATAGCAAAAAACAAAATTTT+AGG - Chr7:45489949-45489968 None:intergenic 15.0%
!!! TAGCAAAAAACAAAATTTTA+GGG - Chr7:45489948-45489967 None:intergenic 15.0%
!!! TGTTTTTTATTGAGATTATT+GGG + Chr7:45487408-45487427 MsG0780038381.01.T01:intron 15.0%
!!! TTAATTTGTGAAAATTTTAC+AGG + Chr7:45488870-45488889 MsG0780038381.01.T01:intron 15.0%
!!! TTCTATGTCTATTTTAAAAT+AGG + Chr7:45489882-45489901 MsG0780038381.01.T01:intron 15.0%
!!! TTGTTTTTTATTGAGATTAT+TGG + Chr7:45487407-45487426 MsG0780038381.01.T01:intron 15.0%
!!! TTTAATATACTTTCTAAAGT+GGG - Chr7:45489142-45489161 None:intergenic 15.0%
!!! TTTTAATATACTTTCTAAAG+TGG - Chr7:45489143-45489162 None:intergenic 15.0%
!! AATTAGTTATGTTTGTTCAT+TGG + Chr7:45489199-45489218 MsG0780038381.01.T01:intron 20.0%
!! ATTTAGTACATACAGAAAAA+TGG + Chr7:45489773-45489792 MsG0780038381.01.T01:intron 20.0%
!! TAATGAATATTGAAAGAAGT+TGG - Chr7:45488291-45488310 None:intergenic 20.0%
!!! ACAAAAAATTTCAAGTGTAT+AGG + Chr7:45490530-45490549 MsG0780038381.01.T01:three_prime_UTR 20.0%
!!! ATTTTAAAATAGGTCCAATT+TGG + Chr7:45489892-45489911 MsG0780038381.01.T01:intron 20.0%
!!! CTATTTGAATTGCATATTTT+GGG - Chr7:45489670-45489689 None:intergenic 20.0%
!!! GTTTAGTTTATATGTATGTA+TGG + Chr7:45487370-45487389 MsG0780038381.01.T01:intron 20.0%
!!! GTTTTTTATTGAGATTATTG+GGG + Chr7:45487409-45487428 MsG0780038381.01.T01:intron 20.0%
!!! TTTTGTCTGTTTTTACAAAA+CGG + Chr7:45488259-45488278 MsG0780038381.01.T01:intron 20.0%
! AAAATGTATTCATTGTAACG+CGG + Chr7:45490599-45490618 MsG0780038381.01.T01:three_prime_UTR 25.0%
! AAGTACAAATCAAGCAAAAA+GGG - Chr7:45488974-45488993 None:intergenic 25.0%
! AATTAGAAGACGGTTAATAA+AGG - Chr7:45488565-45488584 None:intergenic 25.0%
! ACAACATTCAATTGGAATAA+CGG - Chr7:45489349-45489368 None:intergenic 25.0%
! AGTTATTCACAACATTCAAT+TGG - Chr7:45489357-45489376 None:intergenic 25.0%
! ATAGCAATGCTATAACATAA+CGG - Chr7:45490030-45490049 None:intergenic 25.0%
! ATATTGAGCAATAAATCCAA+TGG - Chr7:45488348-45488367 None:intergenic 25.0%
! ATATTTCTTACTACTGAGAT+TGG + Chr7:45489577-45489596 MsG0780038381.01.T01:intron 25.0%
! ATTTAGAAAAAAAAGGGGAA+GGG + Chr7:45489747-45489766 MsG0780038381.01.T01:intron 25.0%
! CACAATATATGATTGACAAA+AGG - Chr7:45487951-45487970 None:intergenic 25.0%
! GAACAAACATAACTAATTAC+TGG - Chr7:45489197-45489216 None:intergenic 25.0%
! GGACAATGAATTTAATATAG+TGG + Chr7:45490472-45490491 MsG0780038381.01.T01:three_prime_UTR 25.0%
! TATCAATGTAACTGACAATT+AGG + Chr7:45487318-45487337 MsG0780038381.01.T01:intron 25.0%
! TATTTAGAAAAAAAAGGGGA+AGG + Chr7:45489746-45489765 MsG0780038381.01.T01:intron 25.0%
! TCAAATAAATACTTTGTCAC+AGG + Chr7:45490179-45490198 MsG0780038381.01.T01:intron 25.0%
! TCACATCTCTGATATTAAAA+TGG - Chr7:45489450-45489469 None:intergenic 25.0%
! TTTATTAACCGTCTTCTAAT+TGG + Chr7:45488564-45488583 MsG0780038381.01.T01:intron 25.0%
!! GCTATTTGAATTGCATATTT+TGG - Chr7:45489671-45489690 None:intergenic 25.0%
!! TACAATGAATACATTTTCCT+TGG - Chr7:45490596-45490615 None:intergenic 25.0%
!!! ACATTTTGATAAAGAGCTTT+AGG + Chr7:45489295-45489314 MsG0780038381.01.T01:intron 25.0%
!!! CATTTTGATAAAGAGCTTTA+GGG + Chr7:45489296-45489315 MsG0780038381.01.T01:intron 25.0%
!!! TTTGTCTGTTTTTACAAAAC+GGG + Chr7:45488260-45488279 MsG0780038381.01.T01:intron 25.0%
AACACATTGTTAATAGAGAC+AGG - Chr7:45487647-45487666 None:intergenic 30.0%
ACTTATCGTTTCTCATTTGT+TGG + Chr7:45490441-45490460 MsG0780038381.01.T01:exon 30.0%
AGTTATGTTTGTTCATTGGT+AGG + Chr7:45489203-45489222 MsG0780038381.01.T01:intron 30.0%
ATCCGACATTAATCAAATTC+AGG - Chr7:45488851-45488870 None:intergenic 30.0%
ATTAAAATGGATGCTGATAC+AGG - Chr7:45489437-45489456 None:intergenic 30.0%
ATTTGTACTTCATTGTGCAT+TGG + Chr7:45488984-45489003 MsG0780038381.01.T01:CDS 30.0%
CAAATGAGAAACGATAAGTT+AGG - Chr7:45490440-45490459 None:intergenic 30.0%
CATGATAACACTTCCAAAAT+TGG - Chr7:45489613-45489632 None:intergenic 30.0%
CTACGTATTACAGTGAATAT+AGG + Chr7:45489831-45489850 MsG0780038381.01.T01:intron 30.0%
GAAGTACAAATCAAGCAAAA+AGG - Chr7:45488975-45488994 None:intergenic 30.0%
GACCTGAATTTGATTAATGT+CGG + Chr7:45488846-45488865 MsG0780038381.01.T01:intron 30.0%
GCAGCATGAAATATTAATAC+TGG - Chr7:45489070-45489089 None:intergenic 30.0%
TAACGGTAGTAGAATAAGTT+TGG - Chr7:45489332-45489351 None:intergenic 30.0%
TACTTATAATTGAGAAGGGA+TGG + Chr7:45487701-45487720 MsG0780038381.01.T01:intron 30.0%
TGATTATTTCAACTGCTATG+TGG - Chr7:45489722-45489741 None:intergenic 30.0%
TGTTATCATGTTATCAAGAG+TGG + Chr7:45489623-45489642 MsG0780038381.01.T01:intron 30.0%
TTAATCAGTGTTGTCAACTA+AGG + Chr7:45488672-45488691 MsG0780038381.01.T01:intron 30.0%
TTGCAAACAAAAGTTAGTAC+AGG - Chr7:45490092-45490111 None:intergenic 30.0%
! ATGCAAGCTTTATAAGCAAA+GGG + Chr7:45488479-45488498 MsG0780038381.01.T01:intron 30.0%
! ATTTTGCTCTTGCATTCAAA+AGG + Chr7:45488212-45488231 MsG0780038381.01.T01:CDS 30.0%
! CTTCTTGCAACTCAATTTTT+GGG + Chr7:45490268-45490287 MsG0780038381.01.T01:CDS 30.0%
! GTCATATTACAGGTAAGTTT+TGG + Chr7:45488624-45488643 MsG0780038381.01.T01:intron 30.0%
! TATGCAAGCTTTATAAGCAA+AGG + Chr7:45488478-45488497 MsG0780038381.01.T01:intron 30.0%
! TTTCAAGTGTATAGGTTAGT+TGG + Chr7:45490538-45490557 MsG0780038381.01.T01:three_prime_UTR 30.0%
! TTTTAGTGTGCTTCATAGTT+AGG - Chr7:45487464-45487483 None:intergenic 30.0%
!! AATTTGCATGTCTTTGGTTT+TGG + Chr7:45487234-45487253 MsG0780038381.01.T01:intron 30.0%
!!! TATTTTGATGATTCTGTTGC+AGG + Chr7:45488309-45488328 MsG0780038381.01.T01:intron 30.0%
!!! TCAACTTGTTTTACTGATCA+GGG + Chr7:45488119-45488138 MsG0780038381.01.T01:intron 30.0%
!!! TTCAACTTGTTTTACTGATC+AGG + Chr7:45488118-45488137 MsG0780038381.01.T01:intron 30.0%
!!! TTGTCTGTTTTTACAAAACG+GGG + Chr7:45488261-45488280 MsG0780038381.01.T01:intron 30.0%
AACATCTAATCTTGATCCAG+CGG - Chr7:45487809-45487828 None:intergenic 35.0%
AAGCCTGCATAAAACATTCT+AGG - Chr7:45488418-45488437 None:intergenic 35.0%
AATCAAACACATGATAGCCT+AGG - Chr7:45487599-45487618 None:intergenic 35.0%
ACATTGTTAATAGAGACAGG+AGG - Chr7:45487644-45487663 None:intergenic 35.0%
ACCAACTTCAATCCTAAATC+AGG - Chr7:45489266-45489285 None:intergenic 35.0%
AGGACAATTTCATTATGCAC+CGG + Chr7:45490220-45490239 MsG0780038381.01.T01:CDS 35.0%
AGTGGTACTAATATCAGAGA+TGG + Chr7:45490490-45490509 MsG0780038381.01.T01:three_prime_UTR 35.0%
AGTTAGTTGACGCATATAGA+AGG + Chr7:45488067-45488086 MsG0780038381.01.T01:intron 35.0%
ATAAATACTTTGTCACAGGC+AGG + Chr7:45490183-45490202 MsG0780038381.01.T01:intron 35.0%
ATTGCCATAATAGCGAAACT+AGG + Chr7:45489967-45489986 MsG0780038381.01.T01:intron 35.0%
CAACAGATCCAATTAGAAGA+CGG - Chr7:45488575-45488594 None:intergenic 35.0%
CATTGTTAATAGAGACAGGA+GGG - Chr7:45487643-45487662 None:intergenic 35.0%
CCAAAGACATGCAAATTCTA+AGG - Chr7:45487231-45487250 None:intergenic 35.0%
CCATGTCAAAGTCATATTAC+AGG + Chr7:45488614-45488633 MsG0780038381.01.T01:CDS 35.0%
CCTGTAATATGACTTTGACA+TGG - Chr7:45488617-45488636 None:intergenic 35.0%
CCTTAGAATTTGCATGTCTT+TGG + Chr7:45487228-45487247 MsG0780038381.01.T01:intron 35.0%
CTATCCTAGTTTCGCTATTA+TGG - Chr7:45489974-45489993 None:intergenic 35.0%
GATATTTGACAACACTGCAT+CGG + Chr7:45490054-45490073 MsG0780038381.01.T01:intron 35.0%
GATTATGTTGTCCATTGGAT+AGG + Chr7:45488175-45488194 MsG0780038381.01.T01:CDS 35.0%
GCAATAAATCCAATGGAAAG+TGG - Chr7:45488341-45488360 None:intergenic 35.0%
GCTATCATGTGTTTGATTCA+AGG + Chr7:45487601-45487620 MsG0780038381.01.T01:intron 35.0%
GCTTGTAAGAACAATGCATA+AGG - Chr7:45488512-45488531 None:intergenic 35.0%
GGTCGAAGAATAGATACAAA+TGG - Chr7:45488944-45488963 None:intergenic 35.0%
GTATTCATTTCCATAGCAGA+GGG - Chr7:45487742-45487761 None:intergenic 35.0%
GTTTGAGAACCAATATCCTA+AGG - Chr7:45489101-45489120 None:intergenic 35.0%
TACTAATATCAGAGATGGCT+AGG + Chr7:45490495-45490514 MsG0780038381.01.T01:three_prime_UTR 35.0%
TAGTAGCAAGTCTATGTACA+AGG - Chr7:45490677-45490696 None:intergenic 35.0%
TATGTACTGAAACCTGTACT+TGG + Chr7:45488365-45488384 MsG0780038381.01.T01:CDS 35.0%
TATTCATTTCCATAGCAGAG+GGG - Chr7:45487741-45487760 None:intergenic 35.0%
TCTTCCTTCTCATTCTTGTT+GGG + Chr7:45489384-45489403 MsG0780038381.01.T01:intron 35.0%
TGTATTCATTTCCATAGCAG+AGG - Chr7:45487743-45487762 None:intergenic 35.0%
TTATTGAGATTATTGGGGAG+TGG + Chr7:45487414-45487433 MsG0780038381.01.T01:intron 35.0%
TTCTTCCTTCTCATTCTTGT+TGG + Chr7:45489383-45489402 MsG0780038381.01.T01:intron 35.0%
! AACCGAAGTCAAATTTTGTC+AGG + Chr7:45489023-45489042 MsG0780038381.01.T01:CDS 35.0%
! AAGGGATGGAGTATTATATC+AGG + Chr7:45487715-45487734 MsG0780038381.01.T01:intron 35.0%
! CCAAAAATTGAGTTGCAAGA+AGG - Chr7:45490270-45490289 None:intergenic 35.0%
! CCTTCTTGCAACTCAATTTT+TGG + Chr7:45490267-45490286 MsG0780038381.01.T01:CDS 35.0%
! CTTCCTAGAATGTTTTATGC+AGG + Chr7:45488412-45488431 MsG0780038381.01.T01:CDS 35.0%
! TGCAAGCTTTATAAGCAAAG+GGG + Chr7:45488480-45488499 MsG0780038381.01.T01:intron 35.0%
! TTTGTGTCATTGCCTGATTT+AGG + Chr7:45489251-45489270 MsG0780038381.01.T01:intron 35.0%
!! AACAAAAGTGTCGGTGTTAA+AGG + Chr7:45487569-45487588 MsG0780038381.01.T01:intron 35.0%
!! ACAAAAGTGTCGGTGTTAAA+GGG + Chr7:45487570-45487589 MsG0780038381.01.T01:intron 35.0%
!! TTCTAAAGTGGGCATACTTA+AGG - Chr7:45489131-45489150 None:intergenic 35.0%
!!! AGCATCACTGTTTTTTGTAG+TGG + Chr7:45489992-45490011 MsG0780038381.01.T01:intron 35.0%
AAAACCCTTTCCCCAAAAAG+AGG - Chr7:45490359-45490378 None:intergenic 40.0%
AAAGTGGGCATACTTAAGGA+TGG - Chr7:45489127-45489146 None:intergenic 40.0%
AACAATAACCGACGCAATAG+TGG - Chr7:45488539-45488558 None:intergenic 40.0%
AAGCTATACCACTATTGCGT+CGG + Chr7:45488528-45488547 MsG0780038381.01.T01:intron 40.0%
AAGGAGTCAGAGTACAGATA+TGG - Chr7:45487932-45487951 None:intergenic 40.0%
AATCCAATGGAAAGTGGCAA+AGG - Chr7:45488335-45488354 None:intergenic 40.0%
ATCGAAAACGAGCAAGCAAA+TGG - Chr7:45488028-45488047 None:intergenic 40.0%
CAAATAGCAGATAGTGATGC+TGG + Chr7:45489683-45489702 MsG0780038381.01.T01:intron 40.0%
CCATAGATAGTCCTATCCAA+TGG - Chr7:45488189-45488208 None:intergenic 40.0%
CCATTGGATAGGACTATCTA+TGG + Chr7:45488186-45488205 MsG0780038381.01.T01:CDS 40.0%
GAACCAATATCCTAAGGTGA+AGG - Chr7:45489095-45489114 None:intergenic 40.0%
GACTTCGGTTTATAGCAAGA+GGG - Chr7:45489013-45489032 None:intergenic 40.0%
GCAACAACAAAAGGAAGCAA+TGG - Chr7:45487155-45487174 None:intergenic 40.0%
GCAGATGTACTATAGCATAG+CGG + Chr7:45488777-45488796 MsG0780038381.01.T01:intron 40.0%
GCAGTAACAGCAACAACAAA+AGG - Chr7:45487164-45487183 None:intergenic 40.0%
GTGAAGGTAATGATGACAAC+AGG - Chr7:45490393-45490412 None:intergenic 40.0%
GTTGACGCATATAGAAGGAA+TGG + Chr7:45488072-45488091 MsG0780038381.01.T01:intron 40.0%
GTTGTAGCCATGGCTATAAT+GGG + Chr7:45490322-45490341 MsG0780038381.01.T01:CDS 40.0%
TAACACTGTATACACGACCA+AGG + Chr7:45490576-45490595 MsG0780038381.01.T01:three_prime_UTR 40.0%
TCTAATTGGATCTGTTGTGC+CGG + Chr7:45488578-45488597 MsG0780038381.01.T01:intron 40.0%
TGACTTCGGTTTATAGCAAG+AGG - Chr7:45489014-45489033 None:intergenic 40.0%
TGTTATCAAGAGTGGAGTTG+CGG + Chr7:45489631-45489650 MsG0780038381.01.T01:intron 40.0%
TGTTGTAGCCATGGCTATAA+TGG + Chr7:45490321-45490340 MsG0780038381.01.T01:CDS 40.0%
TTAGGCCTCAAAAGCAGAAT+CGG - Chr7:45490422-45490441 None:intergenic 40.0%
! AACACCGACACTTTTGTTGA+AGG - Chr7:45487567-45487586 None:intergenic 40.0%
! AGTCAAATTTTGTCAGGCGA+AGG + Chr7:45489029-45489048 MsG0780038381.01.T01:CDS 40.0%
! CACTTCCAAAATTGGTTCAG+AGG - Chr7:45489605-45489624 None:intergenic 40.0%
! CGCCTGACAAAATTTGACTT+CGG - Chr7:45489028-45489047 None:intergenic 40.0%
! GCCTGATTTAGGATTGAAGT+TGG + Chr7:45489262-45489281 MsG0780038381.01.T01:intron 40.0%
! GTGATGTTGGTGAAAGAGAT+TGG + Chr7:45487113-45487132 MsG0780038381.01.T01:CDS 40.0%
! TCTCATTTGTTGGCATTCGT+TGG + Chr7:45490451-45490470 MsG0780038381.01.T01:three_prime_UTR 40.0%
! TCTCTGTCTTGCCTCTTTTT+GGG + Chr7:45490345-45490364 MsG0780038381.01.T01:CDS 40.0%
! TGGTACCTCTGAACCAATTT+TGG + Chr7:45489597-45489616 MsG0780038381.01.T01:intron 40.0%
!! AACCTTCCACTTTTACTTGG+TGG + Chr7:45487201-45487220 MsG0780038381.01.T01:CDS 40.0%
!! ACCTTCCACTTTTACTTGGT+GGG + Chr7:45487202-45487221 MsG0780038381.01.T01:CDS 40.0%
!! ACTTGGTGTGTTGATTGCAA+AGG + Chr7:45488382-45488401 MsG0780038381.01.T01:CDS 40.0%
!! CTCAACCTTCCACTTTTACT+TGG + Chr7:45487198-45487217 MsG0780038381.01.T01:CDS 40.0%
!! TGTACTATAGCATAGCGGAT+TGG + Chr7:45488782-45488801 MsG0780038381.01.T01:intron 40.0%
!!! GTGTTGATTGCAAAGGCTTT+TGG + Chr7:45488389-45488408 MsG0780038381.01.T01:CDS 40.0%
!!! TTTTACAGGTGTTGTTGCTC+CGG + Chr7:45488884-45488903 MsG0780038381.01.T01:intron 40.0%
AAACCGCTTGTGTGCCAAAT+TGG - Chr7:45489909-45489928 None:intergenic 45.0%
AACATAATCCCACCAAGTGC+TGG - Chr7:45488164-45488183 None:intergenic 45.0%
ACAGAGACCCATTATAGCCA+TGG - Chr7:45490332-45490351 None:intergenic 45.0%
ACATAATCCCACCAAGTGCT+GGG - Chr7:45488163-45488182 None:intergenic 45.0%
ACATGGCAAACTGCATCAAC+CGG - Chr7:45488600-45488619 None:intergenic 45.0%
AGAAGAAGACCAAGTGTCAC+CGG - Chr7:45488906-45488925 None:intergenic 45.0%
AGAGTTATATGCCCAGCACT+TGG + Chr7:45488149-45488168 MsG0780038381.01.T01:intron 45.0%
AGCAGTATCATGCGACTCTT+TGG + Chr7:45489854-45489873 MsG0780038381.01.T01:intron 45.0%
ATGGCTACAACAGAACATGC+AGG - Chr7:45490313-45490332 None:intergenic 45.0%
CAGAGATGGCTAGGAAATGT+AGG + Chr7:45490504-45490523 MsG0780038381.01.T01:three_prime_UTR 45.0%
CAGGTCAGTGTTGTCAATCA+CGG - Chr7:45488832-45488851 None:intergenic 45.0%
CTGCCTTCACCTTAGGATAT+TGG + Chr7:45489089-45489108 MsG0780038381.01.T01:CDS 45.0%
GCAATCAACACACCAAGTAC+AGG - Chr7:45488380-45488399 None:intergenic 45.0%
GGTGGGATTATGTTGTCCAT+TGG + Chr7:45488170-45488189 MsG0780038381.01.T01:CDS 45.0%
TGACTATTTGAACGCAGGCA+GGG + Chr7:45487888-45487907 MsG0780038381.01.T01:CDS 45.0%
TGCATGTTCTGTTGTAGCCA+TGG + Chr7:45490312-45490331 MsG0780038381.01.T01:CDS 45.0%
TGCTGATACAGGCAACAATC+CGG - Chr7:45489426-45489445 None:intergenic 45.0%
TGGGCATACTTAAGGATGGA+AGG - Chr7:45489123-45489142 None:intergenic 45.0%
TTATATGCCCAGCACTTGGT+GGG + Chr7:45488153-45488172 MsG0780038381.01.T01:CDS 45.0%
! CACGCCTTCAACAAAAGTGT+CGG + Chr7:45487560-45487579 MsG0780038381.01.T01:intron 45.0%
! CTAAGGCACTATGCACTACA+AGG + Chr7:45488689-45488708 MsG0780038381.01.T01:intron 45.0%
! CTCTGTCTTGCCTCTTTTTG+GGG + Chr7:45490346-45490365 MsG0780038381.01.T01:CDS 45.0%
! GTCTCTGTCTTGCCTCTTTT+TGG + Chr7:45490344-45490363 MsG0780038381.01.T01:CDS 45.0%
!! CAGAACCGATTCTGCTTTTG+AGG + Chr7:45490414-45490433 MsG0780038381.01.T01:CDS 45.0%
!! CCTTCCACTTTTACTTGGTG+GGG + Chr7:45487203-45487222 MsG0780038381.01.T01:CDS 45.0%
!! CTTGCCTCTTTTTGGGGAAA+GGG + Chr7:45490352-45490371 MsG0780038381.01.T01:CDS 45.0%
!! TCAAGCAAAAAGGGCATCAC+AGG - Chr7:45488965-45488984 None:intergenic 45.0%
!! TCTTGCCTCTTTTTGGGGAA+AGG + Chr7:45490351-45490370 MsG0780038381.01.T01:CDS 45.0%
!! TGTGCTGACTATTTGAACGC+AGG + Chr7:45487883-45487902 MsG0780038381.01.T01:CDS 45.0%
!! AATTATATTTAGAAAAAAAA+GGG + Chr7:45489741-45489760 MsG0780038381.01.T01:intron 5.0%
AAGTGTGGAGCTCTGCATTC+CGG - Chr7:45490242-45490261 None:intergenic 50.0%
CCCCACCAAGTAAAAGTGGA+AGG - Chr7:45487206-45487225 None:intergenic 50.0%
CTCCTGAAACACAAGCTGTG+AGG - Chr7:45488444-45488463 None:intergenic 50.0%
CTGACTATTTGAACGCAGGC+AGG + Chr7:45487887-45487906 MsG0780038381.01.T01:CDS 50.0%
GAGTGGAGTTGCGGAAATAG+CGG + Chr7:45489640-45489659 MsG0780038381.01.T01:intron 50.0%
GCAGCCCAACAAGAATGAGA+AGG - Chr7:45489391-45489410 None:intergenic 50.0%
GCTACAACAGAACATGCAGG+AGG - Chr7:45490310-45490329 None:intergenic 50.0%
GGAACCCCACCAAGTAAAAG+TGG - Chr7:45487210-45487229 None:intergenic 50.0%
GGTCCAATTTGGCACACAAG+CGG + Chr7:45489903-45489922 MsG0780038381.01.T01:intron 50.0%
GTCCAACACGTGTTCGACAT+TGG - Chr7:45487533-45487552 None:intergenic 50.0%
GTCCTCACAGCTTGTGTTTC+AGG + Chr7:45488439-45488458 MsG0780038381.01.T01:intron 50.0%
GTTATATGCCCAGCACTTGG+TGG + Chr7:45488152-45488171 MsG0780038381.01.T01:CDS 50.0%
TATATCAGGCCCCTCTGCTA+TGG + Chr7:45487729-45487748 MsG0780038381.01.T01:intron 50.0%
TGCCAATGTCGAACACGTGT+TGG + Chr7:45487528-45487547 MsG0780038381.01.T01:intron 50.0%
TTGTCACAGGCAGGAAGAAC+AGG + Chr7:45490192-45490211 MsG0780038381.01.T01:intron 50.0%
!! AGGCCTTTGCCACTTTCCAT+TGG + Chr7:45488329-45488348 MsG0780038381.01.T01:intron 50.0%
!! GCAGAATCGGTTCTGAGTGA+AGG - Chr7:45490409-45490428 None:intergenic 50.0%
!! TCGGTGTTAAAGGGACACCT+AGG + Chr7:45487579-45487598 MsG0780038381.01.T01:intron 50.0%
!!! AGGCAGGGTATTTTGACAGC+AGG + Chr7:45487903-45487922 MsG0780038381.01.T01:intron 50.0%
ATGCAGAGCTCCACACTTGC+AGG + Chr7:45490244-45490263 MsG0780038381.01.T01:CDS 55.0%
CATGCTGCTGCCTTCACCTT+AGG + Chr7:45489082-45489101 MsG0780038381.01.T01:CDS 55.0%
GTCAGGCGAAGGTCTTCGAT+TGG + Chr7:45489040-45489059 MsG0780038381.01.T01:CDS 55.0%
GTTGTTGCTCCGGTGACACT+TGG + Chr7:45488894-45488913 MsG0780038381.01.T01:CDS 55.0%
TGCAAGAAGGCCTGCAAGTG+TGG - Chr7:45490257-45490276 None:intergenic 55.0%
!! GTTGGTGGTGGTGGTGATGT+TGG + Chr7:45487100-45487119 MsG0780038381.01.T01:CDS 55.0%
AGTCGCACATCTGTGACCGC+TGG + Chr7:45487790-45487809 MsG0780038381.01.T01:CDS 60.0%
GGCAGGAAGAACAGGTGAGC+AGG + Chr7:45490200-45490219 MsG0780038381.01.T01:intron 60.0%
! GGGCTGCTCTGTACTGATGC+CGG + Chr7:45489404-45489423 MsG0780038381.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 45487092 45490718 45487092 ID=MsG0780038381.01;Name=MsG0780038381.01
Chr7 mRNA 45487092 45490718 45487092 ID=MsG0780038381.01.T01;Parent=MsG0780038381.01;Name=MsG0780038381.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0.33|0.14|0.85|1|1|7|277|331
Chr7 exon 45487092 45487224 45487092 ID=MsG0780038381.01.T01:exon:5123;Parent=MsG0780038381.01.T01
Chr7 exon 45487737 45487909 45487737 ID=MsG0780038381.01.T01:exon:5124;Parent=MsG0780038381.01.T01
Chr7 exon 45488151 45488233 45488151 ID=MsG0780038381.01.T01:exon:5125;Parent=MsG0780038381.01.T01
Chr7 exon 45488331 45488451 45488331 ID=MsG0780038381.01.T01:exon:5126;Parent=MsG0780038381.01.T01
Chr7 exon 45488610 45488635 45488610 ID=MsG0780038381.01.T01:exon:5127;Parent=MsG0780038381.01.T01
Chr7 exon 45488892 45489110 45488892 ID=MsG0780038381.01.T01:exon:5128;Parent=MsG0780038381.01.T01
Chr7 exon 45490201 45490718 45490201 ID=MsG0780038381.01.T01:exon:5129;Parent=MsG0780038381.01.T01
Chr7 CDS 45487092 45487224 45487092 ID=MsG0780038381.01.T01:cds;Parent=MsG0780038381.01.T01
Chr7 CDS 45487737 45487909 45487737 ID=MsG0780038381.01.T01:cds;Parent=MsG0780038381.01.T01
Chr7 CDS 45488151 45488233 45488151 ID=MsG0780038381.01.T01:cds;Parent=MsG0780038381.01.T01
Chr7 CDS 45488331 45488451 45488331 ID=MsG0780038381.01.T01:cds;Parent=MsG0780038381.01.T01
Chr7 CDS 45488610 45488635 45488610 ID=MsG0780038381.01.T01:cds;Parent=MsG0780038381.01.T01
Chr7 CDS 45488892 45489110 45488892 ID=MsG0780038381.01.T01:cds;Parent=MsG0780038381.01.T01
Chr7 CDS 45490201 45490441 45490201 ID=MsG0780038381.01.T01:cds;Parent=MsG0780038381.01.T01
Chr7 three_prime_UTR 45490442 45490718 45490442 ID=MsG0780038381.01.T01:three_prime_utr;Parent=MsG0780038381.01.T01
Gene Sequence

>MsG0780038381.01.T01

ATGTTGTTGTTGGTGGTGGTGGTGATGTTGGTGAAAGAGATTGGTCTCAGATTTTGTCTGCCATTGCTTCCTTTTGTTGTTGCTGTTACTGCTGTTGCTGCTCTTTCTCAACCTTCCACTTTTACTTGGTGGGGCCCCTCTGCTATGGAAATGAATACACACTGTTTTAAGATACTCTATTTGCATAGTCGCACATCTGTGACCGCTGGATCAAGATTAGATGTTCTAGTTTCAAGCTTGATTTTCGAATTGTCTAGTCTTGATCAATTTGTTCATCGATGTGCTGACTATTTGAACGCAGGCAGGAGTTATATGCCCAGCACTTGGTGGGATTATGTTGTCCATTGGATAGGACTATCTATGGAAGATTTTGCTCTTGCATTCAAAAGGCCTTTGCCACTTTCCATTGGATTTATTGCTCAATATGTACTGAAACCTGTACTTGGTGTGTTGATTGCAAAGGCTTTTGGCTTCCTAGAATGTTTTATGCAGGCTTTGTCCTCACAGCTTTTTGCCATGTCAAAGTCATATTACAGGTGTTGTTGCTCCGGTGACACTTGGTCTTCTTCTCATACGTATGCAAAGCCATTTGTATCTATTCTTCGACCTGTGATGCCCTTTTTGCTTGATTTGTACTTCATTGTGCATTGGCAGCCCTCTTGCTATAAACCGAAGTCAAATTTTGTCAGGCGAAGGTCTTCGATTGGTGCTCCAGTATTAATATTTCATGCTGCTGCCTTCACCTTAGGATATTGGCAGGAAGAACAGGTGAGCAGGACAATTTCATTATGCACCGGAATGCAGAGCTCCACACTTGCAGGCCTTCTTGCAACTCAATTTTTGGGAAGTAGTCAAGCAGTTCCTCCTGCATGTTCTGTTGTAGCCATGGCTATAATGGGTCTCTGTCTTGCCTCTTTTTGGGGAAAGGGTTTTGAAATTAAAAACCTGTTGTCATCATTACCTTCACTCAGAACCGATTCTGCTTTTGAGGCCTAA

Protein sequence

>MsG0780038381.01.T01

MLLLVVVVMLVKEIGLRFCLPLLPFVVAVTAVAALSQPSTFTWWGPSAMEMNTHCFKILYLHSRTSVTAGSRLDVLVSSLIFELSSLDQFVHRCADYLNAGRSYMPSTWWDYVVHWIGLSMEDFALAFKRPLPLSIGFIAQYVLKPVLGVLIAKAFGFLECFMQALSSQLFAMSKSYYRCCCSGDTWSSSHTYAKPFVSILRPVMPFLLDLYFIVHWQPSCYKPKSNFVRRRSSIGAPVLIFHAAAFTLGYWQEEQVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVVAMAIMGLCLASFWGKGFEIKNLLSSLPSLRTDSAFEA*