AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134090 MtrunA17_Chr7g0214171 100.000 106 0 0 1 106 1 106 5.29e-77 222
Msa1134090 MtrunA17_Chr5g0427821 86.792 106 14 0 1 106 7 112 8.65e-68 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134090 AT4G24440.2 90.566 106 10 0 1 106 1 106 6.66e-71 207
Msa1134090 AT4G24440.1 90.566 106 10 0 1 106 1 106 6.66e-71 207

Find 41 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCCTGAGATTGCGATTC+AGG 0.222867 7_4:-516543 Msa1134090:CDS
TTAATCTTGGCGATCGATTT+AGG 0.231845 7_4:-517032 Msa1134090:intron
TTTCTCTGGGCAAACATCTA+TGG 0.280270 7_4:-513291 Msa1134090:three_prime_UTR
TATGTTATTATAGATTTAAA+AGG 0.331823 7_4:-513482 Msa1134090:three_prime_UTR
CTCTCTCGATTAGTTAATCT+TGG 0.355497 7_4:-517045 Msa1134090:five_prime_UTR
ATGTGGCCTTCAGTTCTTGC+AGG 0.384806 7_4:-513520 Msa1134090:three_prime_UTR
TAGTCATCGTTATAAATGTA+TGG 0.419101 7_4:-513259 Msa1134090:three_prime_UTR
TCGTTATAAATGTATGGTTA+TGG 0.429200 7_4:-513253 Msa1134090:three_prime_UTR
AATGTGCCTCACTGAGACTT+TGG 0.433161 7_4:-516591 Msa1134090:CDS
TGAGAATATCACTTGGGAAC+TGG 0.438530 7_4:-513418 Msa1134090:three_prime_UTR
AATAATAACATGAAGATTGA+AGG 0.444739 7_4:+513459 None:intergenic
GTAGTCTATGACTGAAGCTC+TGG 0.460011 7_4:-516404 Msa1134090:intron
GGTTCTCGTTCAGTTTGATA+AGG 0.472558 7_4:-516522 Msa1134090:intron
GAAGGCCACATCCGTCACTA+TGG 0.482621 7_4:+513532 None:intergenic
CAAAGCATCTTGTAAGATGA+AGG 0.489651 7_4:+513703 None:intergenic
CTTATCATCTGCTGGTACCA+TGG 0.489942 7_4:-513568 Msa1134090:three_prime_UTR
TAACCCGTCCAACATTCTCT+TGG 0.494051 7_4:+513663 None:intergenic
CACTGAGACTTTGGACGAGA+TGG 0.495885 7_4:-516582 Msa1134090:CDS
AGAACCTGAATCGCAATCTC+AGG 0.497392 7_4:+516539 None:intergenic
ATTTGTTTACATAGAGCTCA+TGG 0.502581 7_4:+513319 None:intergenic
TAAAAGCAAGGTCTCTATCA+AGG 0.505886 7_4:-516371 Msa1134090:intron
ACAAGGAGCTTATCATCTGC+TGG 0.531966 7_4:-513576 Msa1134090:three_prime_UTR
TGTTGGACGGGTTAAAATAG+TGG 0.534469 7_4:-513654 Msa1134090:CDS
CTGGTTCCTGCAAGAACTGA+AGG 0.534775 7_4:+513514 None:intergenic
CATCTGCTGGTACCATGGAT+TGG 0.547292 7_4:-513563 Msa1134090:three_prime_UTR
CTGCTGGTACCATGGATTGG+TGG 0.547361 7_4:-513560 Msa1134090:three_prime_UTR
CTTTATCGTAGGTCGACAAT+CGG 0.550857 7_4:-516614 Msa1134090:CDS
GAAGACAACCAAGAGAATGT+TGG 0.561206 7_4:-513671 Msa1134090:CDS
TAATAACATAGTGTAGATGC+TGG 0.566171 7_4:+513495 None:intergenic
TTGGACGAGATGGTTCAGAA+TGG 0.589806 7_4:-516572 Msa1134090:CDS
CAACCAAGAGAATGTTGGAC+GGG 0.592439 7_4:-513666 Msa1134090:CDS
TTAGACCATAGTGACGGATG+TGG 0.610434 7_4:-513537 Msa1134090:three_prime_UTR
ATGGTCTAACCACCAATCCA+TGG 0.610777 7_4:+513551 None:intergenic
GGAAACACAAGTTAAAAGCA+AGG 0.611187 7_4:-516383 Msa1134090:CDS
TTTCTATCGTATTGTCAACA+AGG 0.636647 7_4:-513593 Msa1134090:three_prime_UTR
GTTACATTGAGAATATCACT+TGG 0.644377 7_4:-513425 Msa1134090:three_prime_UTR
ACAACCAAGAGAATGTTGGA+CGG 0.645466 7_4:-513667 Msa1134090:CDS
CGACGTTCGAACTTTATCGT+AGG 0.648273 7_4:-516625 Msa1134090:CDS
TTACATTGAGAATATCACTT+GGG 0.661466 7_4:-513424 Msa1134090:three_prime_UTR
TGGTGGTTAGACCATAGTGA+CGG 0.696323 7_4:-513543 Msa1134090:three_prime_UTR
TCTCGTCCAAAGTCTCAGTG+AGG 0.751939 7_4:+516585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTGAATAAATTCTT+TGG - chr7_4:515155-515174 Msa1134090:intron 10.0%
!! ATTTATTGAATAAATTCTTT+GGG - chr7_4:515156-515175 Msa1134090:intron 10.0%
!! TATGTTATTATAGATTTAAA+AGG - chr7_4:516882-516901 Msa1134090:intron 10.0%
!!! ACAGTTTTTTTTTTTTTTTT+TGG + chr7_4:517009-517028 None:intergenic 10.0%
!! TTTGATGTGTAATTAAAATT+TGG + chr7_4:514679-514698 None:intergenic 15.0%
!! TTTATTGAATAAATTCTTTG+GGG - chr7_4:515157-515176 Msa1134090:intron 15.0%
!!! TACCTTTTTACTTAATTTTT+TGG - chr7_4:515766-515785 Msa1134090:intron 15.0%
!!! AAACATAAAAAGATGTTTTA+AGG + chr7_4:516469-516488 None:intergenic 15.0%
!!! TAAACAAATTTATTTTTCTC+TGG - chr7_4:517059-517078 Msa1134090:five_prime_UTR 15.0%
!!! AAACAAATTTATTTTTCTCT+GGG - chr7_4:517060-517079 Msa1134090:five_prime_UTR 15.0%
!! TTCAATTAACAAAAAGAGTA+GGG + chr7_4:513411-513430 None:intergenic 20.0%
!! ATTCAATTAACAAAAAGAGT+AGG + chr7_4:513412-513431 None:intergenic 20.0%
!!! CTTATTATTTTAATTGCATG+TGG - chr7_4:513932-513951 Msa1134090:intron 20.0%
!!! TTTTTACCTTTCAATTCAAT+GGG - chr7_4:514541-514560 Msa1134090:intron 20.0%
!!! TAAAATTTGGTTTAAGACAT+TGG + chr7_4:514666-514685 None:intergenic 20.0%
!! TTACATTTAGAAATTCCTTA+TGG - chr7_4:515527-515546 Msa1134090:intron 20.0%
!! TATTTGCATTATCTTCTATT+TGG - chr7_4:515589-515608 Msa1134090:intron 20.0%
!!! ATCATTCAAGGTTTAATTTT+TGG - chr7_4:515623-515642 Msa1134090:intron 20.0%
!! TTAAGTAAAAAGGTAATTGT+GGG + chr7_4:515761-515780 None:intergenic 20.0%
!! ATTAAGTAAAAAGGTAATTG+TGG + chr7_4:515762-515781 None:intergenic 20.0%
!! AGCCAAAAAATTAAGTAAAA+AGG + chr7_4:515771-515790 None:intergenic 20.0%
!! ATAATCATGAGTAAAAAGTA+TGG + chr7_4:515860-515879 None:intergenic 20.0%
!! TTAAAATTCTTCTACGTAAT+AGG - chr7_4:516127-516146 Msa1134090:intron 20.0%
!! TAAAATTCTTCTACGTAATA+GGG - chr7_4:516128-516147 Msa1134090:intron 20.0%
!! TAGTACAAAATGTTGTTAAA+TGG + chr7_4:516174-516193 None:intergenic 20.0%
!! AATAATAACATGAAGATTGA+AGG + chr7_4:516908-516927 None:intergenic 20.0%
!!! TCACATTTTTCAAGCTAAAA+TGG - chr7_4:513716-513735 Msa1134090:CDS 25.0%
!! ATCTTTTGTTAGATAGTGTA+AGG - chr7_4:514027-514046 Msa1134090:intron 25.0%
!! TTCATCTCATTAGTTTGAAT+TGG + chr7_4:514263-514282 None:intergenic 25.0%
!! CTTTTTACCTTTCAATTCAA+TGG - chr7_4:514540-514559 Msa1134090:intron 25.0%
!! TCTCATAGTTTGGAATAAAT+CGG + chr7_4:514575-514594 None:intergenic 25.0%
!! CACATCAAATAACAATTTTC+CGG - chr7_4:514690-514709 Msa1134090:intron 25.0%
!! ACATCAAATAACAATTTTCC+GGG - chr7_4:514691-514710 Msa1134090:intron 25.0%
!!! TTTTCAAGAGATTCTTAAAC+CGG + chr7_4:514795-514814 None:intergenic 25.0%
! ATGACATGTTTCAGTATAAA+GGG + chr7_4:514844-514863 None:intergenic 25.0%
! TGTTGAAAAACCAAATTTGA+TGG - chr7_4:515070-515089 Msa1134090:intron 25.0%
! CTATAATTCACCATCAAATT+TGG + chr7_4:515083-515102 None:intergenic 25.0%
! TAGAATTGTCTGATAAAAAC+TGG - chr7_4:515100-515119 Msa1134090:intron 25.0%
! ATTCAGTTACAAATCCTATT+TGG + chr7_4:515128-515147 None:intergenic 25.0%
! GTTTGTACTAGGAATAAATA+TGG + chr7_4:515352-515371 None:intergenic 25.0%
!! AGAAAAATTGAAACTGACTT+TGG + chr7_4:515458-515477 None:intergenic 25.0%
! TCATAAAGAAATACTATGCA+AGG + chr7_4:515482-515501 None:intergenic 25.0%
! GAGATTTAAAGAGATTGAAT+TGG - chr7_4:515724-515743 Msa1134090:intron 25.0%
! TTAAAGAGATTGAATTGGTA+TGG - chr7_4:515729-515748 Msa1134090:intron 25.0%
! ATAACAGTCATATATGTCAA+TGG + chr7_4:515888-515907 None:intergenic 25.0%
! GAAACTAAGTAAACTATTGT+TGG - chr7_4:515975-515994 Msa1134090:intron 25.0%
! TACAAAATGTTGTTAAATGG+AGG + chr7_4:516171-516190 None:intergenic 25.0%
!! ATAGAAGATTAATTTGACTG+TGG - chr7_4:516385-516404 Msa1134090:CDS 25.0%
!! TAGAAGATTAATTTGACTGT+GGG - chr7_4:516386-516405 Msa1134090:CDS 25.0%
!!! AAAAGATGTTTTAAGGTGTT+GGG + chr7_4:516462-516481 None:intergenic 25.0%
!!! AAAAAGATGTTTTAAGGTGT+TGG + chr7_4:516463-516482 None:intergenic 25.0%
! TTACATTGAGAATATCACTT+GGG - chr7_4:516940-516959 Msa1134090:intron 25.0%
! TAGTCATCGTTATAAATGTA+TGG - chr7_4:517105-517124 Msa1134090:five_prime_UTR 25.0%
! TCGTTATAAATGTATGGTTA+TGG - chr7_4:517111-517130 Msa1134090:five_prime_UTR 25.0%
! TCATTTTCATAGCTTCTTAC+CGG - chr7_4:513514-513533 Msa1134090:three_prime_UTR 30.0%
AATGAATACTGTAGTAGTAG+TGG - chr7_4:513545-513564 Msa1134090:three_prime_UTR 30.0%
CATTTCATGAGAAAACAAAG+AGG + chr7_4:513612-513631 None:intergenic 30.0%
!!! AGTGTAAGGTGTTGATTTTT+TGG - chr7_4:514041-514060 Msa1134090:intron 30.0%
TATTGTTAAGATTGTCTAGC+AGG - chr7_4:514080-514099 Msa1134090:intron 30.0%
ATTGTTAAGATTGTCTAGCA+GGG - chr7_4:514081-514100 Msa1134090:intron 30.0%
CATTGAGCAACAAATATACA+AGG + chr7_4:514153-514172 None:intergenic 30.0%
!! TACTGAGCCTTGTATATTTT+TGG - chr7_4:514175-514194 Msa1134090:intron 30.0%
GATTGAGCCAAAAATATACA+AGG + chr7_4:514185-514204 None:intergenic 30.0%
TAATGAGATGAAGTTTACCT+AGG - chr7_4:514271-514290 Msa1134090:intron 30.0%
AATGAGATGAAGTTTACCTA+GGG - chr7_4:514272-514291 Msa1134090:intron 30.0%
!! GTATCAGTTTTTCAATCCAA+TGG - chr7_4:514503-514522 Msa1134090:intron 30.0%
TTTATTCCAAACTATGAGAG+AGG - chr7_4:514576-514595 Msa1134090:intron 30.0%
TAAAATCAAAGTCGAGGATA+TGG + chr7_4:514636-514655 None:intergenic 30.0%
TGGAAGAACATGAAAAAATG+AGG + chr7_4:514724-514743 None:intergenic 30.0%
GAAAGTTTGTGAATGAGTTT+CGG + chr7_4:514755-514774 None:intergenic 30.0%
GGTTTAAGAATCTCTTGAAA+AGG - chr7_4:514794-514813 Msa1134090:intron 30.0%
GATGACATGTTTCAGTATAA+AGG + chr7_4:514845-514864 None:intergenic 30.0%
! AAATCTCTAAAGGCTGAAAT+AGG + chr7_4:514867-514886 None:intergenic 30.0%
CCAACTTTACAAATCTCTAA+AGG + chr7_4:514877-514896 None:intergenic 30.0%
! CCTTTAGAGATTTGTAAAGT+TGG - chr7_4:514874-514893 Msa1134090:intron 30.0%
! ACACAAAGGTATATTGTAGA+GGG + chr7_4:514903-514922 None:intergenic 30.0%
ATACAACTGTTAACACACAA+AGG + chr7_4:514917-514936 None:intergenic 30.0%
! GTGTTCTTTATTTATCAGCA+TGG + chr7_4:514955-514974 None:intergenic 30.0%
GATAAAAACTGGTACCAAAT+AGG - chr7_4:515111-515130 Msa1134090:intron 30.0%
ACACAGAACTAAAATTACAC+AGG - chr7_4:515216-515235 Msa1134090:intron 30.0%
GTTATTGTAGAATTATTGCG+TGG + chr7_4:515311-515330 None:intergenic 30.0%
! GCATATTTTCTGTTTGTACT+AGG + chr7_4:515363-515382 None:intergenic 30.0%
TGTGCAGTTAGTATCTATTA+TGG + chr7_4:515416-515435 None:intergenic 30.0%
GCATAGTATTTCTTTATGAG+AGG - chr7_4:515483-515502 Msa1134090:intron 30.0%
CATTTAGAAATTCCTTATGG+CGG - chr7_4:515530-515549 Msa1134090:intron 30.0%
ATTTAGAAATTCCTTATGGC+GGG - chr7_4:515531-515550 Msa1134090:intron 30.0%
!!! ATTTTTTGGCTCTAAACATG+AGG - chr7_4:515780-515799 Msa1134090:intron 30.0%
GGAAGTCATGACAAAAAAAA+TGG + chr7_4:515839-515858 None:intergenic 30.0%
!!! GTTTTTTCCATCTCTTTTTG+CGG - chr7_4:515943-515962 Msa1134090:intron 30.0%
!!! TTTTTTCCATCTCTTTTTGC+GGG - chr7_4:515944-515963 Msa1134090:intron 30.0%
TAAACTATTGTTGGATAGCA+AGG - chr7_4:515984-516003 Msa1134090:intron 30.0%
TTGTTAAATGGAGGATATAG+TGG + chr7_4:516162-516181 None:intergenic 30.0%
TTGTACTAAATAACGTATCG+TGG - chr7_4:516186-516205 Msa1134090:intron 30.0%
ACTATACCACTATAATGTAG+CGG + chr7_4:516235-516254 None:intergenic 30.0%
TTGTTAAATAGCAGCTATAG+TGG + chr7_4:516259-516278 None:intergenic 30.0%
! ACAGATTTTGTGACAATGTT+TGG - chr7_4:516637-516656 Msa1134090:exon 30.0%
TTTCTATCGTATTGTCAACA+AGG - chr7_4:516771-516790 Msa1134090:intron 30.0%
TAATAACATAGTGTAGATGC+TGG + chr7_4:516872-516891 None:intergenic 30.0%
GTTACATTGAGAATATCACT+TGG - chr7_4:516939-516958 Msa1134090:intron 30.0%
ATTTGTTTACATAGAGCTCA+TGG + chr7_4:517048-517067 None:intergenic 30.0%
! CTCTCTCGATTAGTTAATCT+TGG - chr7_4:513319-513338 Msa1134090:three_prime_UTR 35.0%
! TTAATCTTGGCGATCGATTT+AGG - chr7_4:513332-513351 Msa1134090:three_prime_UTR 35.0%
AAAATAATCGCGAAGAAGGA+AGG + chr7_4:513371-513390 None:intergenic 35.0%
CCAAAAAATAATCGCGAAGA+AGG + chr7_4:513375-513394 None:intergenic 35.0%
!!! CCTTCTTCGCGATTATTTTT+TGG - chr7_4:513372-513391 Msa1134090:three_prime_UTR 35.0%
! TGATTCTGCTACTTGAAACT+GGG - chr7_4:513473-513492 Msa1134090:three_prime_UTR 35.0%
CAGTATTCATTATATTCCGC+CGG + chr7_4:513536-513555 None:intergenic 35.0%
CAGTTTGATAAGGTAGGTTT+CGG - chr7_4:513852-513871 Msa1134090:intron 35.0%
GGAAACACAAGTTAAAAGCA+AGG - chr7_4:513981-514000 Msa1134090:intron 35.0%
TAAAAGCAAGGTCTCTATCA+AGG - chr7_4:513993-514012 Msa1134090:intron 35.0%
!!! AAGGTGTTGATTTTTTGGTG+AGG - chr7_4:514046-514065 Msa1134090:intron 35.0%
! TCTCATTAGTTTGAATTGGC+TGG + chr7_4:514259-514278 None:intergenic 35.0%
GTCGCATTTCAGTTTAAGTA+TGG - chr7_4:514294-514313 Msa1134090:intron 35.0%
TTACCTTTCAATTCAATGGG+TGG - chr7_4:514544-514563 Msa1134090:intron 35.0%
!! TCCTCGACTTTGATTTTACT+TGG - chr7_4:514638-514657 Msa1134090:intron 35.0%
TCCAAGTAAAATCAAAGTCG+AGG + chr7_4:514642-514661 None:intergenic 35.0%
AAAAAATGAGGAAGAGAACC+CGG + chr7_4:514712-514731 None:intergenic 35.0%
AAGAATCTCTTGAAAAGGTG+TGG - chr7_4:514799-514818 Msa1134090:intron 35.0%
! CACACAAAGGTATATTGTAG+AGG + chr7_4:514904-514923 None:intergenic 35.0%
TGTGTGTTAACAGTTGTATC+TGG - chr7_4:514918-514937 Msa1134090:intron 35.0%
ACAATTCAAGTCCACAAATC+AGG - chr7_4:514973-514992 Msa1134090:intron 35.0%
TCCACAAATCAGGATCAAAT+AGG - chr7_4:514983-515002 Msa1134090:intron 35.0%
CCACAAATCAGGATCAAATA+GGG - chr7_4:514984-515003 Msa1134090:intron 35.0%
AGAATTATTGCGTGGTTAAC+TGG + chr7_4:515303-515322 None:intergenic 35.0%
TAAAGATGCCTAACTTGAGA+GGG + chr7_4:515560-515579 None:intergenic 35.0%
TTAAAGATGCCTAACTTGAG+AGG + chr7_4:515561-515580 None:intergenic 35.0%
TAAACATGAGGTTCATTTGC+CGG - chr7_4:515792-515811 Msa1134090:intron 35.0%
ATGAGATCGTATAGTGCAAA+AGG + chr7_4:515923-515942 None:intergenic 35.0%
! ACTTTTACATGAACAAGCCA+TGG + chr7_4:516044-516063 None:intergenic 35.0%
AACGTATCGTGGAACAATAA+CGG - chr7_4:516197-516216 Msa1134090:intron 35.0%
CAAATTCCGCTACATTATAG+TGG - chr7_4:516226-516245 Msa1134090:intron 35.0%
GAACACTCAGAGTAAAGAAA+AGG + chr7_4:516575-516594 None:intergenic 35.0%
! TCTTTTCACTTTCCAATCAC+AGG - chr7_4:516599-516618 Msa1134090:CDS 35.0%
! CTTTTCACTTTCCAATCACA+GGG - chr7_4:516600-516619 Msa1134090:CDS 35.0%
! CAAAGCATCTTGTAAGATGA+AGG + chr7_4:516664-516683 None:intergenic 35.0%
! GTGATTCTGCTACTTGAAAC+TGG - chr7_4:513472-513491 Msa1134090:three_prime_UTR 40.0%
! TTTTCATAGCTTCTTACCGG+CGG - chr7_4:513517-513536 Msa1134090:three_prime_UTR 40.0%
TTAACAAGACTGACTGCACT+AGG + chr7_4:513651-513670 None:intergenic 40.0%
CTTTATCGTAGGTCGACAAT+CGG - chr7_4:513750-513769 Msa1134090:intron 40.0%
GGTTCTCGTTCAGTTTGATA+AGG - chr7_4:513842-513861 Msa1134090:intron 40.0%
CTCGTTCAGTTTGATAAGGT+AGG - chr7_4:513846-513865 Msa1134090:intron 40.0%
GATAAGGTAGGTTTCGGAAT+TGG - chr7_4:513858-513877 Msa1134090:intron 40.0%
GAGACTACATGTTTCGTTTC+TGG - chr7_4:513887-513906 Msa1134090:intron 40.0%
! ACATGTTTCGTTTCTGGATC+TGG - chr7_4:513893-513912 Msa1134090:intron 40.0%
!!! TTTTTTGGTGAGGTGAAGCA+TGG - chr7_4:514056-514075 Msa1134090:intron 40.0%
TTAAGATTGTCTAGCAGGGA+TGG - chr7_4:514085-514104 Msa1134090:intron 40.0%
TTAAACTGAAATGCGACCCT+AGG + chr7_4:514291-514310 None:intergenic 40.0%
CAACCACCCATTGAATTGAA+AGG + chr7_4:514550-514569 None:intergenic 40.0%
ACATCTCCTCTCTCATAGTT+TGG + chr7_4:514585-514604 None:intergenic 40.0%
AGTTTGTGAATGAGTTTCGG+AGG + chr7_4:514752-514771 None:intergenic 40.0%
! CCCTATTTGATCCTGATTTG+TGG + chr7_4:514987-515006 None:intergenic 40.0%
TTGTGAACTGTCTCTGACTT+GGG + chr7_4:515190-515209 None:intergenic 40.0%
ATTGTGAACTGTCTCTGACT+TGG + chr7_4:515191-515210 None:intergenic 40.0%
! GGATTAGTGAAACACAGTCA+CGG - chr7_4:515237-515256 Msa1134090:intron 40.0%
ATTGCGTGGTTAACTGGAAT+AGG + chr7_4:515297-515316 None:intergenic 40.0%
GAGAAGAAACGCATCATTCA+AGG - chr7_4:515611-515630 Msa1134090:intron 40.0%
AAACATGAGGTTCATTTGCC+GGG - chr7_4:515793-515812 Msa1134090:intron 40.0%
ATATGACCAAACTGCATACC+CGG + chr7_4:515814-515833 None:intergenic 40.0%
! TCTCATGATGATGACAACCA+TGG - chr7_4:516024-516043 Msa1134090:intron 40.0%
TCTTCTACGTAATAGGGCTA+TGG - chr7_4:516134-516153 Msa1134090:intron 40.0%
GAAGACAACCAAGAGAATGT+TGG - chr7_4:516693-516712 Msa1134090:intron 40.0%
ACAACCAAGAGAATGTTGGA+CGG - chr7_4:516697-516716 Msa1134090:intron 40.0%
!! TGTTGGACGGGTTAAAATAG+TGG - chr7_4:516710-516729 Msa1134090:intron 40.0%
TGAGAATATCACTTGGGAAC+TGG - chr7_4:516946-516965 Msa1134090:intron 40.0%
TTTCTCTGGGCAAACATCTA+TGG - chr7_4:517073-517092 Msa1134090:five_prime_UTR 40.0%
CGACGTTCGAACTTTATCGT+AGG - chr7_4:513739-513758 Msa1134090:CDS 45.0%
AATGTGCCTCACTGAGACTT+TGG - chr7_4:513773-513792 Msa1134090:intron 45.0%
TTGGACGAGATGGTTCAGAA+TGG - chr7_4:513792-513811 Msa1134090:intron 45.0%
TAGTCCTGAGATTGCGATTC+AGG - chr7_4:513821-513840 Msa1134090:intron 45.0%
AGAACCTGAATCGCAATCTC+AGG + chr7_4:513828-513847 None:intergenic 45.0%
! TAGGTTTCGGAATTGGTGCT+AGG - chr7_4:513865-513884 Msa1134090:intron 45.0%
GTAGTCTATGACTGAAGCTC+TGG - chr7_4:513960-513979 Msa1134090:intron 45.0%
AATCAGAGAGACGAAGGGTT+TGG - chr7_4:514201-514220 Msa1134090:intron 45.0%
!! CAGACGTAACTTGTTACGAG+TGG - chr7_4:514382-514401 Msa1134090:intron 45.0%
AGCAAAAGTGACACAGCCAT+TGG + chr7_4:514522-514541 None:intergenic 45.0%
AATGAGTTTCGGAGGATGGA+TGG + chr7_4:514744-514763 None:intergenic 45.0%
TGTGAATGAGTTTCGGAGGA+TGG + chr7_4:514748-514767 None:intergenic 45.0%
TCTGATCACGCTCATTGTTC+CGG - chr7_4:514773-514792 Msa1134090:intron 45.0%
! CTCTTGAAAAGGTGTGGCAT+TGG - chr7_4:514805-514824 Msa1134090:intron 45.0%
!! AGAAAGCTCTAGAACCCTTG+TGG + chr7_4:515266-515285 None:intergenic 45.0%
AGCACGCCAACAACATGAAA+CGG + chr7_4:516415-516434 None:intergenic 45.0%
TATGCAGATGTCCCTGTGAT+TGG + chr7_4:516614-516633 None:intergenic 45.0%
CAACCAAGAGAATGTTGGAC+GGG - chr7_4:516698-516717 Msa1134090:intron 45.0%
TAACCCGTCCAACATTCTCT+TGG + chr7_4:516704-516723 None:intergenic 45.0%
ACAAGGAGCTTATCATCTGC+TGG - chr7_4:516788-516807 Msa1134090:intron 45.0%
CTTATCATCTGCTGGTACCA+TGG - chr7_4:516796-516815 Msa1134090:intron 45.0%
ATGGTCTAACCACCAATCCA+TGG + chr7_4:516816-516835 None:intergenic 45.0%
TGGTGGTTAGACCATAGTGA+CGG - chr7_4:516821-516840 Msa1134090:intron 45.0%
!! TTAGACCATAGTGACGGATG+TGG - chr7_4:516827-516846 Msa1134090:intron 45.0%
TCTCGTCCAAAGTCTCAGTG+AGG + chr7_4:513782-513801 None:intergenic 50.0%
CACTGAGACTTTGGACGAGA+TGG - chr7_4:513782-513801 Msa1134090:intron 50.0%
TGGCTCAATCAGAGAGACGA+AGG - chr7_4:514195-514214 Msa1134090:intron 50.0%
GGCTCAATCAGAGAGACGAA+GGG - chr7_4:514196-514215 Msa1134090:intron 50.0%
AGAGATACGCACACTGTGTG+TGG - chr7_4:514340-514359 Msa1134090:intron 50.0%
TGTGTGTGGACACTTGTGTG+AGG - chr7_4:514354-514373 Msa1134090:intron 50.0%
ACACAGTCACGGTTTCCACA+AGG - chr7_4:515248-515267 Msa1134090:intron 50.0%
CACAGTCACGGTTTCCACAA+GGG - chr7_4:515249-515268 Msa1134090:intron 50.0%
CATTTGCCGGGTATGCAGTT+TGG - chr7_4:515805-515824 Msa1134090:intron 50.0%
! TCCATCTCTTTTTGCGGGAG+TGG - chr7_4:515949-515968 Msa1134090:intron 50.0%
! CCATCTCTTTTTGCGGGAGT+GGG - chr7_4:515950-515969 Msa1134090:intron 50.0%
CATCTGCTGGTACCATGGAT+TGG - chr7_4:516801-516820 Msa1134090:intron 50.0%
ATGTGGCCTTCAGTTCTTGC+AGG - chr7_4:516844-516863 Msa1134090:intron 50.0%
CTGGTTCCTGCAAGAACTGA+AGG + chr7_4:516853-516872 None:intergenic 50.0%
AGAGAGACGAAGGGTTTGGC+TGG - chr7_4:514205-514224 Msa1134090:intron 55.0%
!! TGGTAAGTGAGAGCACCCTC+AGG - chr7_4:514225-514244 Msa1134090:intron 55.0%
!! TGAGAGGGTATCCCGCCATA+AGG + chr7_4:515545-515564 None:intergenic 55.0%
GCGGGATACCCTCTCAAGTT+AGG - chr7_4:515549-515568 Msa1134090:intron 55.0%
CCCACTCCCGCAAAAAGAGA+TGG + chr7_4:515953-515972 None:intergenic 55.0%
! GGGCTGCCGTTTCATGTTGT+TGG - chr7_4:516406-516425 Msa1134090:intron 55.0%
TTGGCGTGCTCAGTAGCTTG+TGG - chr7_4:516425-516444 Msa1134090:intron 55.0%
! TGGCGTGCTCAGTAGCTTGT+GGG - chr7_4:516426-516445 Msa1134090:intron 55.0%
!! CTGCTGGTACCATGGATTGG+TGG - chr7_4:516804-516823 Msa1134090:intron 55.0%
GAAGGCCACATCCGTCACTA+TGG + chr7_4:516835-516854 None:intergenic 55.0%
TGGCTGGCAGTGTGACCTGA+GGG + chr7_4:514243-514262 None:intergenic 60.0%
TTGGCTGGCAGTGTGACCTG+AGG + chr7_4:514244-514263 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 513243 517143 513243 ID=Msa1134090;Name=Msa1134090
chr7_4 mRNA 513243 517143 513243 ID=Msa1134090-mRNA-1;Parent=Msa1134090;Name=Msa1134090-mRNA-1;_AED=0.23;_eAED=0.23;_QI=131|1|1|1|0.66|0.5|4|382|106
chr7_4 exon 513243 513765 513243 ID=Msa1134090-mRNA-1:exon:192;Parent=Msa1134090-mRNA-1
chr7_4 exon 516372 516422 516372 ID=Msa1134090-mRNA-1:exon:191;Parent=Msa1134090-mRNA-1
chr7_4 exon 516523 516671 516523 ID=Msa1134090-mRNA-1:exon:190;Parent=Msa1134090-mRNA-1
chr7_4 exon 517033 517143 517033 ID=Msa1134090-mRNA-1:exon:189;Parent=Msa1134090-mRNA-1
chr7_4 five_prime_UTR 517033 517143 517033 ID=Msa1134090-mRNA-1:five_prime_utr;Parent=Msa1134090-mRNA-1
chr7_4 five_prime_UTR 516652 516671 516652 ID=Msa1134090-mRNA-1:five_prime_utr;Parent=Msa1134090-mRNA-1
chr7_4 CDS 516523 516651 516523 ID=Msa1134090-mRNA-1:cds;Parent=Msa1134090-mRNA-1
chr7_4 CDS 516372 516422 516372 ID=Msa1134090-mRNA-1:cds;Parent=Msa1134090-mRNA-1
chr7_4 CDS 513625 513765 513625 ID=Msa1134090-mRNA-1:cds;Parent=Msa1134090-mRNA-1
chr7_4 three_prime_UTR 513243 513624 513243 ID=Msa1134090-mRNA-1:three_prime_utr;Parent=Msa1134090-mRNA-1
Gene Sequence

>Msa1134090

ATGGCGACGTTCGAACTTTATCGTAGGTCGACAATCGGAATGTGCCTCACTGAGACTTTGGACGAGATGGTTCAGAATGGAACTCTTAGTCCTGAGATTGCGATTCAGGTTCTCGTTCAGTTTGATAAGTCTATGACTGAAGCTCTGGAAACACAAGTTAAAAGCAAGGTCTCTATCAAGGGACATCTGCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTTAAGAATGAAGACAACCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATGTGACTCGAAATTGCTCAGTCAGTAA

Protein sequence

>Msa1134090

MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ*