Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098340 | XP_013465907.1 | 97.917 | 144 | 3 | 0 | 1 | 144 | 1 | 144 | 6.42e-95 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098340 | A0A072VEU0 | 97.917 | 144 | 3 | 0 | 1 | 144 | 1 | 144 | 3.07e-95 | 287 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa0098340 | 0.823777 | 1.154106e-53 | -8.615850e-47 |
| Msa0015090 | Msa0098340 | 0.816409 | 5.614040e-52 | -8.615850e-47 |
| Msa0032470 | Msa0098340 | 0.830326 | 3.128256e-55 | -8.615850e-47 |
| Msa0037880 | Msa0098340 | 0.801170 | 1.021563e-48 | -8.615850e-47 |
| Msa0042550 | Msa0098340 | 0.820472 | 6.737146e-53 | -8.615850e-47 |
| Msa0043980 | Msa0098340 | 0.816290 | 5.967078e-52 | -8.615850e-47 |
| Msa0049750 | Msa0098340 | 0.813033 | 3.140492e-51 | -8.615850e-47 |
| Msa0053010 | Msa0098340 | 0.868407 | 6.682809e-66 | -8.615850e-47 |
| Msa0056030 | Msa0098340 | 0.803023 | 4.248001e-49 | -8.615850e-47 |
| Msa0068740 | Msa0098340 | -0.801042 | 1.085068e-48 | -8.615850e-47 |
| Msa0071250 | Msa0098340 | 0.832706 | 8.110965e-56 | -8.615850e-47 |
| Msa0077180 | Msa0098340 | 0.813633 | 2.319024e-51 | -8.615850e-47 |
| Msa0086420 | Msa0098340 | 0.813384 | 2.631132e-51 | -8.615850e-47 |
| Msa0090100 | Msa0098340 | 0.817372 | 3.411999e-52 | -8.615850e-47 |
| Msa0095560 | Msa0098340 | 0.800882 | 1.169872e-48 | -8.615850e-47 |
| Msa0096030 | Msa0098340 | 0.830701 | 2.532081e-55 | -8.615850e-47 |
| Msa0098320 | Msa0098340 | 0.829886 | 4.004569e-55 | -8.615850e-47 |
| Msa0098340 | Msa0104800 | 0.805231 | 1.474836e-49 | -8.615850e-47 |
| Msa0098340 | Msa0130520 | 0.805032 | 1.623498e-49 | -8.615850e-47 |
| Msa0098340 | Msa0137570 | 0.822129 | 2.793833e-53 | -8.615850e-47 |
| Msa0098340 | Msa0138020 | 0.817465 | 3.251031e-52 | -8.615850e-47 |
| Msa0098340 | Msa0178510 | 0.818210 | 2.207253e-52 | -8.615850e-47 |
| Msa0098340 | Msa0180510 | -0.800599 | 1.336489e-48 | -8.615850e-47 |
| Msa0098340 | Msa0182570 | 0.809516 | 1.820859e-50 | -8.615850e-47 |
| Msa0098340 | Msa0189030 | 0.835964 | 1.234555e-56 | -8.615850e-47 |
| Msa0098340 | Msa0190530 | 0.803690 | 3.090594e-49 | -8.615850e-47 |
| Msa0098340 | Msa0197610 | 0.812863 | 3.421850e-51 | -8.615850e-47 |
| Msa0098340 | Msa0202930 | 0.808672 | 2.760683e-50 | -8.615850e-47 |
| Msa0098340 | Msa0206010 | 0.801948 | 7.077347e-49 | -8.615850e-47 |
| Msa0098340 | Msa0207030 | 0.803967 | 2.707844e-49 | -8.615850e-47 |
| Msa0098340 | Msa0217680 | 0.800837 | 1.195080e-48 | -8.615850e-47 |
| Msa0098340 | Msa0218370 | 0.819203 | 1.313461e-52 | -8.615850e-47 |
| Msa0098340 | Msa0236420 | 0.831893 | 1.289671e-55 | -8.615850e-47 |
| Msa0098340 | Msa0241140 | 0.825085 | 5.680572e-54 | -8.615850e-47 |
| Msa0098340 | Msa0257500 | 0.817760 | 2.789817e-52 | -8.615850e-47 |
| Msa0098340 | Msa0262370 | 0.818021 | 2.436109e-52 | -8.615850e-47 |
| Msa0098340 | Msa0270960 | 0.832068 | 1.167437e-55 | -8.615850e-47 |
| Msa0098340 | Msa0272450 | 0.800961 | 1.127016e-48 | -8.615850e-47 |
| Msa0098340 | Msa0284450 | 0.804764 | 1.847216e-49 | -8.615850e-47 |
| Msa0098340 | Msa0285330 | 0.816496 | 5.368109e-52 | -8.615850e-47 |
| Msa0098340 | Msa0286670 | 0.809072 | 2.266442e-50 | -8.615850e-47 |
| Msa0098340 | Msa0303150 | 0.800363 | 1.492904e-48 | -8.615850e-47 |
| Msa0098340 | Msa0305410 | 0.811274 | 7.599316e-51 | -8.615850e-47 |
| Msa0098340 | Msa0309270 | 0.848021 | 7.992323e-60 | -8.615850e-47 |
| Msa0098340 | Msa0322680 | 0.803386 | 3.573672e-49 | -8.615850e-47 |
| Msa0098340 | Msa0326110 | 0.809638 | 1.714094e-50 | -8.615850e-47 |
| Msa0098340 | Msa0337590 | 0.815517 | 8.877649e-52 | -8.615850e-47 |
| Msa0098340 | Msa0357790 | 0.807695 | 4.458505e-50 | -8.615850e-47 |
| Msa0098340 | Msa0357830 | 0.809005 | 2.342891e-50 | -8.615850e-47 |
| Msa0098340 | Msa0357840 | 0.804589 | 2.009098e-49 | -8.615850e-47 |
| Msa0098340 | Msa0358860 | 0.834388 | 3.086005e-56 | -8.615850e-47 |
| Msa0098340 | Msa0366210 | 0.801333 | 9.460565e-49 | -8.615850e-47 |
| Msa0098340 | Msa0371950 | 0.805567 | 1.254070e-49 | -8.615850e-47 |
| Msa0098340 | Msa0389610 | -0.805357 | 1.388110e-49 | -8.615850e-47 |
| Msa0098340 | Msa0394340 | 0.811225 | 7.788083e-51 | -8.615850e-47 |
| Msa0098340 | Msa0397270 | 0.813753 | 2.182027e-51 | -8.615850e-47 |
| Msa0098340 | Msa0397460 | 0.804615 | 1.983799e-49 | -8.615850e-47 |
| Msa0098340 | Msa0412840 | 0.810598 | 1.064699e-50 | -8.615850e-47 |
| Msa0098340 | Msa0414140 | 0.808578 | 2.890547e-50 | -8.615850e-47 |
| Msa0098340 | Msa0417330 | 0.812984 | 3.219338e-51 | -8.615850e-47 |
| Msa0098340 | Msa0433410 | -0.809292 | 2.034144e-50 | -8.615850e-47 |
| Msa0098340 | Msa0457510 | 0.803755 | 2.996266e-49 | -8.615850e-47 |
| Msa0098340 | Msa0472960 | -0.812521 | 4.066534e-51 | -8.615850e-47 |
| Msa0098340 | Msa0481280 | 0.800566 | 1.357193e-48 | -8.615850e-47 |
| Msa0098340 | Msa0485490 | 0.813443 | 2.553484e-51 | -8.615850e-47 |
| Msa0098340 | Msa0518380 | 0.801278 | 9.711387e-49 | -8.615850e-47 |
| Msa0098340 | Msa0521270 | 0.833875 | 4.148015e-56 | -8.615850e-47 |
| Msa0098340 | Msa0525610 | 0.814707 | 1.343002e-51 | -8.615850e-47 |
| Msa0098340 | Msa0535630 | 0.808396 | 3.161660e-50 | -8.615850e-47 |
| Msa0098340 | Msa0549780 | 0.811633 | 6.349913e-51 | -8.615850e-47 |
| Msa0098340 | Msa0566350 | 0.836469 | 9.187101e-57 | -8.615850e-47 |
| Msa0098340 | Msa0566750 | 0.828943 | 6.787376e-55 | -8.615850e-47 |
| Msa0098340 | Msa0579130 | 0.802713 | 4.923049e-49 | -8.615850e-47 |
| Msa0098340 | Msa0608710 | 0.809569 | 1.773847e-50 | -8.615850e-47 |
| Msa0098340 | Msa0621790 | 0.836031 | 1.187154e-56 | -8.615850e-47 |
| Msa0098340 | Msa0624060 | 0.804847 | 1.774821e-49 | -8.615850e-47 |
| Msa0098340 | Msa0651270 | 0.811353 | 7.304758e-51 | -8.615850e-47 |
| Msa0098340 | Msa0667740 | 0.804569 | 2.028947e-49 | -8.615850e-47 |
| Msa0098340 | Msa0705990 | 0.812330 | 4.476585e-51 | -8.615850e-47 |
| Msa0098340 | Msa0709160 | 0.833351 | 5.606262e-56 | -8.615850e-47 |
| Msa0098340 | Msa0711100 | 0.824620 | 7.313898e-54 | -8.615850e-47 |
| Msa0098340 | Msa0721280 | 0.804190 | 2.432989e-49 | -8.615850e-47 |
| Msa0098340 | Msa0749440 | 0.800419 | 1.454350e-48 | -8.615850e-47 |
| Msa0098340 | Msa0750850 | 0.811773 | 5.921030e-51 | -8.615850e-47 |
| Msa0098340 | Msa0763890 | 0.818734 | 1.679657e-52 | -8.615850e-47 |
| Msa0098340 | Msa0763920 | 0.821705 | 3.503339e-53 | -8.615850e-47 |
| Msa0098340 | Msa0766090 | 0.821017 | 5.049575e-53 | -8.615850e-47 |
| Msa0098340 | Msa0773590 | 0.833258 | 5.912849e-56 | -8.615850e-47 |
| Msa0098340 | Msa0788540 | 0.806555 | 7.772821e-50 | -8.615850e-47 |
| Msa0098340 | Msa0795720 | 0.829333 | 5.457984e-55 | -8.615850e-47 |
| Msa0098340 | Msa0801730 | 0.803037 | 4.219836e-49 | -8.615850e-47 |
| Msa0098340 | Msa0811040 | 0.802519 | 5.398105e-49 | -8.615850e-47 |
| Msa0098340 | Msa0817460 | 0.804489 | 2.107741e-49 | -8.615850e-47 |
| Msa0098340 | Msa0827350 | -0.808657 | 2.781285e-50 | -8.615850e-47 |
| Msa0098340 | Msa0831850 | 0.801701 | 7.953471e-49 | -8.615850e-47 |
| Msa0098340 | Msa0832150 | 0.831788 | 1.368822e-55 | -8.615850e-47 |
| Msa0098340 | Msa0833460 | 0.826827 | 2.190842e-54 | -8.615850e-47 |
| Msa0098340 | Msa0842770 | 0.801042 | 1.085068e-48 | -8.615850e-47 |
| Msa0098340 | Msa0844110 | 0.806164 | 9.394023e-50 | -8.615850e-47 |
| Msa0098340 | Msa0860030 | -0.801605 | 8.321303e-49 | -8.615850e-47 |
| Msa0098340 | Msa0861570 | 0.805786 | 1.128012e-49 | -8.615850e-47 |
| Msa0098340 | Msa0894710 | 0.809536 | 1.802503e-50 | -8.615850e-47 |
| Msa0098340 | Msa0921420 | 0.804777 | 1.835522e-49 | -8.615850e-47 |
| Msa0098340 | Msa0925870 | 0.818457 | 1.941196e-52 | -8.615850e-47 |
| Msa0098340 | Msa0946280 | -0.818873 | 1.561240e-52 | -8.615850e-47 |
| Msa0098340 | Msa0958920 | 0.810980 | 8.798152e-51 | -8.615850e-47 |
| Msa0098340 | Msa0962840 | 0.810446 | 1.148062e-50 | -8.615850e-47 |
| Msa0098340 | Msa0992600 | 0.823411 | 1.405133e-53 | -8.615850e-47 |
| Msa0098340 | Msa1016910 | 0.809569 | 1.773847e-50 | -8.615850e-47 |
| Msa0098340 | Msa1026940 | 0.814918 | 1.206420e-51 | -8.615850e-47 |
| Msa0098340 | Msa1058170 | 0.828992 | 6.603969e-55 | -8.615850e-47 |
| Msa0098340 | Msa1063400 | 0.800518 | 1.387859e-48 | -8.615850e-47 |
| Msa0098340 | Msa1063420 | 0.816000 | 6.927927e-52 | -8.615850e-47 |
| Msa0098340 | Msa1071320 | 0.808540 | 2.946185e-50 | -8.615850e-47 |
| Msa0098340 | Msa1077340 | 0.802482 | 5.495121e-49 | -8.615850e-47 |
| Msa0098340 | Msa1081790 | -0.826098 | 3.268915e-54 | -8.615850e-47 |
| Msa0098340 | Msa1087990 | 0.806661 | 7.380534e-50 | -8.615850e-47 |
| Msa0098340 | Msa1102790 | 0.831647 | 1.482733e-55 | -8.615850e-47 |
| Msa0098340 | Msa1115280 | 0.807615 | 4.634782e-50 | -8.615850e-47 |
| Msa0098340 | Msa1140230 | 0.807879 | 4.074600e-50 | -8.615850e-47 |
| Msa0098340 | Msa1166090 | -0.828503 | 8.669520e-55 | -8.615850e-47 |
| Msa0098340 | Msa1207310 | 0.830661 | 2.590293e-55 | -8.615850e-47 |
| Msa0098340 | Msa1207350 | 0.818326 | 2.078245e-52 | -8.615850e-47 |
| Msa0098340 | Msa1208380 | 0.816108 | 6.555119e-52 | -8.615850e-47 |
| Msa0098340 | Msa1257800 | -0.815913 | 7.247101e-52 | -8.615850e-47 |
| Msa0098340 | Msa1270660 | 0.823548 | 1.305690e-53 | -8.615850e-47 |
| Msa0098340 | Msa1270730 | 0.821905 | 3.148133e-53 | -8.615850e-47 |
| Msa0098340 | Msa1276440 | 0.801994 | 6.922280e-49 | -8.615850e-47 |
| Msa0098340 | Msa1280320 | 0.802468 | 5.532020e-49 | -8.615850e-47 |
| Msa0098340 | Msa1295330 | 0.806007 | 1.013870e-49 | -8.615850e-47 |
| Msa0098340 | Msa1295930 | 0.822580 | 2.195368e-53 | -8.615850e-47 |
| Msa0098340 | Msa1331320 | 0.822292 | 2.561592e-53 | -8.615850e-47 |
| Msa0098340 | Msa1335230 | 0.823135 | 1.629969e-53 | -8.615850e-47 |
| Msa0098340 | Msa1342100 | 0.837320 | 5.572017e-57 | -8.615850e-47 |
| Msa0098340 | Msa1346840 | 0.801334 | 9.455369e-49 | -8.615850e-47 |
| Msa0098340 | Msa1357890 | 0.802216 | 6.232435e-49 | -8.615850e-47 |
| Msa0098340 | Msa1371940 | 0.800022 | 1.751409e-48 | -8.615850e-47 |
| Msa0098340 | Msa1372150 | 0.823143 | 1.623424e-53 | -8.615850e-47 |
| Msa0098340 | Msa1378410 | 0.800540 | 1.374146e-48 | -8.615850e-47 |
| Msa0098340 | Msa1396400 | -0.827196 | 1.787944e-54 | -8.615850e-47 |
| Msa0098340 | Msa1401990 | 0.828768 | 7.482948e-55 | -8.615850e-47 |
| Msa0098340 | Msa1406110 | -0.839228 | 1.796842e-57 | -8.615850e-47 |
| Msa0098340 | Msa1412890 | 0.811182 | 7.956425e-51 | -8.615850e-47 |
| Msa0098340 | Msa1420270 | 0.803439 | 3.483991e-49 | -8.615850e-47 |
| Msa0098340 | Msa1423820 | 0.831282 | 1.822998e-55 | -8.615850e-47 |
| Msa0098340 | Msa1430130 | 0.808869 | 2.505008e-50 | -8.615850e-47 |
| Msa0098340 | Msa1437130 | 0.807387 | 5.181373e-50 | -8.615850e-47 |
| Msa0098340 | Msa1437730 | 0.818791 | 1.629767e-52 | -8.615850e-47 |
| Msa0098340 | Msa1437910 | 0.829605 | 4.688952e-55 | -8.615850e-47 |
| Msa0098340 | Msa1442790 | 0.813239 | 2.831097e-51 | -8.615850e-47 |
| Msa0098340 | Msa1444740 | 0.821960 | 3.057111e-53 | -8.615850e-47 |
| Msa0098340 | Msa1460750 | 0.809111 | 2.223287e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098340 | MtrunA17_Chr1g0151811 | 97.917 | 144 | 3 | 0 | 1 | 144 | 1 | 144 | 5.91e-99 | 287 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATACTTGCCCTCCAGCTC+TGG | 0.283202 | 1_3:-4266863 | Msa0098340:CDS |
| AGCTCTGGGTAGCTCCCTTT+TGG | 0.302288 | 1_3:-4266848 | Msa0098340:CDS |
| GAGTGGACCGGAGGGTAATT+AGG | 0.356616 | 1_3:-4267760 | Msa0098340:CDS |
| CCGGTTTGAAGTATCTTTCT+CGG | 0.366115 | 1_3:+4267736 | None:intergenic |
| CGCTGGTGTCCAACCAAGCT+GGG | 0.376066 | 1_3:-4266818 | Msa0098340:CDS |
| CGAACCGTTGTCCTTTGAAC+CGG | 0.377901 | 1_3:+4267782 | None:intergenic |
| CACCAGCGCCATTGGCCAAA+AGG | 0.382748 | 1_3:+4266833 | None:intergenic |
| ACAATCATCCACGTCAGATT+TGG | 0.383251 | 1_3:-4267873 | Msa0098340:CDS |
| GATCTAGTTCCTTGTTATTG+AGG | 0.401781 | 1_3:-4267916 | Msa0098340:CDS |
| GGAGGAGGTTGCTGTGGAGA+AGG | 0.406336 | 1_3:+4267617 | None:intergenic |
| GTCAGATTTGGTGTTACAAT+GGG | 0.408255 | 1_3:-4267861 | Msa0098340:CDS |
| ATCTAGTTCCTTGTTATTGA+GGG | 0.425809 | 1_3:-4267915 | Msa0098340:CDS |
| AAAGATACTTCAAACCGGTT+TGG | 0.432467 | 1_3:-4267731 | Msa0098340:CDS |
| GACAAGTACCTGAGAATCCT+TGG | 0.435770 | 1_3:+4267596 | None:intergenic |
| ATAATCAAAATCAGAGTAAC+GGG | 0.439354 | 1_3:-4267664 | Msa0098340:CDS |
| GCGCTGGTGTCCAACCAAGC+TGG | 0.444395 | 1_3:-4266819 | Msa0098340:CDS |
| GGAGGAGGGAGTGATGGATA+AGG | 0.447865 | 1_3:-4268020 | None:intergenic |
| ACCAGCGCCATTGGCCAAAA+GGG | 0.459848 | 1_3:+4266834 | None:intergenic |
| AATTACCTCCCCAGCTTGGT+TGG | 0.461021 | 1_3:+4266809 | None:intergenic |
| AACCTCCTCCAAGGATTCTC+AGG | 0.463865 | 1_3:-4267604 | Msa0098340:intron |
| CGGACTATGGAAGGAAGACT+TGG | 0.467720 | 1_3:-4266885 | Msa0098340:intron |
| AGGTAATTCACTTCAAGTAT+TGG | 0.481099 | 1_3:-4266794 | Msa0098340:CDS |
| CACAATGTTATTATCAGTGT+GGG | 0.485274 | 1_3:+4267703 | None:intergenic |
| GAGGAGGTTGCTGTGGAGAA+GGG | 0.485463 | 1_3:+4267618 | None:intergenic |
| TTATTGAGGGCTAGCTCAGA+TGG | 0.486801 | 1_3:-4267902 | Msa0098340:CDS |
| CAATGTTGTTGCTGTTGTCA+TGG | 0.495227 | 1_3:+4267984 | None:intergenic |
| TGGTTGGACACCAGCGCCAT+TGG | 0.500490 | 1_3:+4266825 | None:intergenic |
| AAAAGGGAGCTACCCAGAGC+TGG | 0.507687 | 1_3:+4266850 | None:intergenic |
| ATTCTTTAAACCCGGTTCAA+AGG | 0.508867 | 1_3:-4267793 | Msa0098340:CDS |
| CAGTGTGGGATGTTCCAAAC+CGG | 0.511797 | 1_3:+4267717 | None:intergenic |
| ACTGATAATAACATTGTGAA+TGG | 0.516194 | 1_3:-4267698 | Msa0098340:CDS |
| CGTCAGATTTGGTGTTACAA+TGG | 0.518607 | 1_3:-4267862 | Msa0098340:CDS |
| GATACTTGCCCTCCAGCTCT+GGG | 0.520792 | 1_3:-4266862 | Msa0098340:CDS |
| AATAATCAAAATCAGAGTAA+CGG | 0.527412 | 1_3:-4267665 | Msa0098340:CDS |
| GAACCGTTGTCCTTTGAACC+GGG | 0.534500 | 1_3:+4267783 | None:intergenic |
| TCTCGGTCCTAATTACCCTC+CGG | 0.553037 | 1_3:+4267753 | None:intergenic |
| GGACAACGGTTCGAGTGGAC+CGG | 0.554350 | 1_3:-4267772 | Msa0098340:CDS |
| AGTGAATTACCTCCCCAGCT+TGG | 0.557173 | 1_3:+4266805 | None:intergenic |
| CCGAGAAAGATACTTCAAAC+CGG | 0.563010 | 1_3:-4267736 | Msa0098340:CDS |
| ATCCTTGGAGGAGGTTGCTG+TGG | 0.564143 | 1_3:+4267611 | None:intergenic |
| GGGGCACGTTGACGAAGACT+AGG | 0.582315 | 1_3:+4267638 | None:intergenic |
| AGGGAGCTACCCAGAGCTGG+AGG | 0.586262 | 1_3:+4266853 | None:intergenic |
| AGGAGGTTGCTGTGGAGAAG+GGG | 0.586535 | 1_3:+4267619 | None:intergenic |
| TAAACAAGATTCTTTAAACC+CGG | 0.587106 | 1_3:-4267801 | Msa0098340:CDS |
| CTCCACAGCAACCTCCTCCA+AGG | 0.591267 | 1_3:-4267613 | Msa0098340:CDS |
| TCACAATGTTATTATCAGTG+TGG | 0.596873 | 1_3:+4267702 | None:intergenic |
| TACCTGAGAATCCTTGGAGG+AGG | 0.596976 | 1_3:+4267602 | None:intergenic |
| TCAAAGGACAACGGTTCGAG+TGG | 0.611497 | 1_3:-4267777 | Msa0098340:CDS |
| GGTGTCCAACCAAGCTGGGG+AGG | 0.619019 | 1_3:-4266814 | Msa0098340:CDS |
| GAAGCGATTAAGGTGCATGA+AGG | 0.621498 | 1_3:-4267831 | Msa0098340:CDS |
| CAACGGTTCGAGTGGACCGG+AGG | 0.627723 | 1_3:-4267769 | Msa0098340:CDS |
| AAGTACCTGAGAATCCTTGG+AGG | 0.631363 | 1_3:+4267599 | None:intergenic |
| GCTGGTGTCCAACCAAGCTG+GGG | 0.632628 | 1_3:-4266817 | Msa0098340:CDS |
| AACGGTTCGAGTGGACCGGA+GGG | 0.639023 | 1_3:-4267768 | Msa0098340:CDS |
| GGGAGCTACCCAGAGCTGGA+GGG | 0.645126 | 1_3:+4266854 | None:intergenic |
| TCAGATTTGGTGTTACAATG+GGG | 0.648899 | 1_3:-4267860 | Msa0098340:CDS |
| CAGATTTGGTGTTACAATGG+GGG | 0.650450 | 1_3:-4267859 | Msa0098340:CDS |
| TGAGCTAGCCCTCAATAACA+AGG | 0.657714 | 1_3:+4267907 | None:intergenic |
| GGACTATGGAAGGAAGACTT+GGG | 0.658016 | 1_3:-4266884 | Msa0098340:intron |
| TTGTAACACCAAATCTGACG+TGG | 0.660043 | 1_3:+4267865 | None:intergenic |
| AAACCCGGTTCAAAGGACAA+CGG | 0.698115 | 1_3:-4267786 | Msa0098340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATCATGCAATTTTTT+TGG | - | chr1_3:4267261-4267280 | Msa0098340:intron | 15.0% |
| !!! | TTAAAATCATGCAATTTTTT+TGG | - | chr1_3:4267261-4267280 | Msa0098340:intron | 15.0% |
| !! | AATAATCAAAATCAGAGTAA+CGG | - | chr1_3:4267116-4267135 | Msa0098340:intron | 20.0% |
| !! | AATAGCAAAAAAAATCACAA+TGG | + | chr1_3:4267332-4267351 | None:intergenic | 20.0% |
| !! | TGAATCACATAGATTAAATT+AGG | - | chr1_3:4267742-4267761 | Msa0098340:CDS | 20.0% |
| !! | AATAATCAAAATCAGAGTAA+CGG | - | chr1_3:4267116-4267135 | Msa0098340:intron | 20.0% |
| !! | AATAGCAAAAAAAATCACAA+TGG | + | chr1_3:4267332-4267351 | None:intergenic | 20.0% |
| !! | TGAATCACATAGATTAAATT+AGG | - | chr1_3:4267742-4267761 | Msa0098340:CDS | 20.0% |
| ! | GATAATAGAGACAAAAATGA+AGG | - | chr1_3:4266834-4266853 | Msa0098340:CDS | 25.0% |
| ! | TAAACAAGATTCTTTAAACC+CGG | - | chr1_3:4266980-4266999 | Msa0098340:intron | 25.0% |
| ! | ACTGATAATAACATTGTGAA+TGG | - | chr1_3:4267083-4267102 | Msa0098340:intron | 25.0% |
| ! | ATAATCAAAATCAGAGTAAC+GGG | - | chr1_3:4267117-4267136 | Msa0098340:intron | 25.0% |
| ! | AGTTTGGAAAAAAAATCGAT+CGG | - | chr1_3:4267470-4267489 | Msa0098340:intron | 25.0% |
| ! | TCAACTTAATATTAGGATAG+TGG | - | chr1_3:4267667-4267686 | Msa0098340:CDS | 25.0% |
| ! | ACATGATCAAACAAAAACAT+TGG | - | chr1_3:4267779-4267798 | Msa0098340:CDS | 25.0% |
| ! | TATGTGAATTTCTTTGATTG+AGG | - | chr1_3:4267816-4267835 | Msa0098340:CDS | 25.0% |
| ! | GATAATAGAGACAAAAATGA+AGG | - | chr1_3:4266834-4266853 | Msa0098340:CDS | 25.0% |
| ! | TAAACAAGATTCTTTAAACC+CGG | - | chr1_3:4266980-4266999 | Msa0098340:intron | 25.0% |
| ! | ACTGATAATAACATTGTGAA+TGG | - | chr1_3:4267083-4267102 | Msa0098340:intron | 25.0% |
| ! | ATAATCAAAATCAGAGTAAC+GGG | - | chr1_3:4267117-4267136 | Msa0098340:intron | 25.0% |
| ! | AGTTTGGAAAAAAAATCGAT+CGG | - | chr1_3:4267470-4267489 | Msa0098340:intron | 25.0% |
| ! | TCAACTTAATATTAGGATAG+TGG | - | chr1_3:4267667-4267686 | Msa0098340:CDS | 25.0% |
| ! | ACATGATCAAACAAAAACAT+TGG | - | chr1_3:4267779-4267798 | Msa0098340:CDS | 25.0% |
| ! | TATGTGAATTTCTTTGATTG+AGG | - | chr1_3:4267816-4267835 | Msa0098340:CDS | 25.0% |
| AATAGAGACAAAAATGAAGG+AGG | - | chr1_3:4266837-4266856 | Msa0098340:CDS | 30.0% | |
| ATAGAGACAAAAATGAAGGA+GGG | - | chr1_3:4266838-4266857 | Msa0098340:CDS | 30.0% | |
| !! | ATCTAGTTCCTTGTTATTGA+GGG | - | chr1_3:4266866-4266885 | Msa0098340:CDS | 30.0% |
| CACAATGTTATTATCAGTGT+GGG | + | chr1_3:4267081-4267100 | None:intergenic | 30.0% | |
| TCACAATGTTATTATCAGTG+TGG | + | chr1_3:4267082-4267101 | None:intergenic | 30.0% | |
| GTTTGGAAAAAAAATCGATC+GGG | - | chr1_3:4267471-4267490 | Msa0098340:intron | 30.0% | |
| !! | CCTAATATTAAGTTGAATCG+CGG | + | chr1_3:4267663-4267682 | None:intergenic | 30.0% |
| ! | TATTAGGATAGTGGTCATAA+TGG | - | chr1_3:4267676-4267695 | Msa0098340:CDS | 30.0% |
| ! | ATTAGGATAGTGGTCATAAT+GGG | - | chr1_3:4267677-4267696 | Msa0098340:CDS | 30.0% |
| AGGTAATTCACTTCAAGTAT+TGG | - | chr1_3:4267987-4268006 | Msa0098340:CDS | 30.0% | |
| AATAGAGACAAAAATGAAGG+AGG | - | chr1_3:4266837-4266856 | Msa0098340:CDS | 30.0% | |
| ATAGAGACAAAAATGAAGGA+GGG | - | chr1_3:4266838-4266857 | Msa0098340:CDS | 30.0% | |
| !! | ATCTAGTTCCTTGTTATTGA+GGG | - | chr1_3:4266866-4266885 | Msa0098340:CDS | 30.0% |
| CACAATGTTATTATCAGTGT+GGG | + | chr1_3:4267081-4267100 | None:intergenic | 30.0% | |
| TCACAATGTTATTATCAGTG+TGG | + | chr1_3:4267082-4267101 | None:intergenic | 30.0% | |
| GTTTGGAAAAAAAATCGATC+GGG | - | chr1_3:4267471-4267490 | Msa0098340:intron | 30.0% | |
| !! | CCTAATATTAAGTTGAATCG+CGG | + | chr1_3:4267663-4267682 | None:intergenic | 30.0% |
| ! | TATTAGGATAGTGGTCATAA+TGG | - | chr1_3:4267676-4267695 | Msa0098340:CDS | 30.0% |
| ! | ATTAGGATAGTGGTCATAAT+GGG | - | chr1_3:4267677-4267696 | Msa0098340:CDS | 30.0% |
| AGGTAATTCACTTCAAGTAT+TGG | - | chr1_3:4267987-4268006 | Msa0098340:CDS | 30.0% | |
| TAGAGACAAAAATGAAGGAG+GGG | - | chr1_3:4266839-4266858 | Msa0098340:CDS | 35.0% | |
| !! | GATCTAGTTCCTTGTTATTG+AGG | - | chr1_3:4266865-4266884 | Msa0098340:CDS | 35.0% |
| !! | GTCAGATTTGGTGTTACAAT+GGG | - | chr1_3:4266920-4266939 | Msa0098340:intron | 35.0% |
| !! | TCAGATTTGGTGTTACAATG+GGG | - | chr1_3:4266921-4266940 | Msa0098340:intron | 35.0% |
| ATTCTTTAAACCCGGTTCAA+AGG | - | chr1_3:4266988-4267007 | Msa0098340:intron | 35.0% | |
| AAAGATACTTCAAACCGGTT+TGG | - | chr1_3:4267050-4267069 | Msa0098340:intron | 35.0% | |
| CAATCAAGCAAGTCAAAAGA+GGG | + | chr1_3:4267225-4267244 | None:intergenic | 35.0% | |
| TCAATCAAGCAAGTCAAAAG+AGG | + | chr1_3:4267226-4267245 | None:intergenic | 35.0% | |
| ! | TGCATGTTAACTTGGAATCA+AGG | + | chr1_3:4267429-4267448 | None:intergenic | 35.0% |
| CCGCGATTCAACTTAATATT+AGG | - | chr1_3:4267660-4267679 | Msa0098340:CDS | 35.0% | |
| !! | TATAGCTTGCTAGTGTGTAA+AGG | + | chr1_3:4267861-4267880 | None:intergenic | 35.0% |
| TAGAGACAAAAATGAAGGAG+GGG | - | chr1_3:4266839-4266858 | Msa0098340:CDS | 35.0% | |
| !! | GATCTAGTTCCTTGTTATTG+AGG | - | chr1_3:4266865-4266884 | Msa0098340:CDS | 35.0% |
| !! | GTCAGATTTGGTGTTACAAT+GGG | - | chr1_3:4266920-4266939 | Msa0098340:intron | 35.0% |
| !! | TCAGATTTGGTGTTACAATG+GGG | - | chr1_3:4266921-4266940 | Msa0098340:intron | 35.0% |
| ATTCTTTAAACCCGGTTCAA+AGG | - | chr1_3:4266988-4267007 | Msa0098340:intron | 35.0% | |
| AAAGATACTTCAAACCGGTT+TGG | - | chr1_3:4267050-4267069 | Msa0098340:intron | 35.0% | |
| CAATCAAGCAAGTCAAAAGA+GGG | + | chr1_3:4267225-4267244 | None:intergenic | 35.0% | |
| TCAATCAAGCAAGTCAAAAG+AGG | + | chr1_3:4267226-4267245 | None:intergenic | 35.0% | |
| ! | TGCATGTTAACTTGGAATCA+AGG | + | chr1_3:4267429-4267448 | None:intergenic | 35.0% |
| CCGCGATTCAACTTAATATT+AGG | - | chr1_3:4267660-4267679 | Msa0098340:CDS | 35.0% | |
| !! | TATAGCTTGCTAGTGTGTAA+AGG | + | chr1_3:4267861-4267880 | None:intergenic | 35.0% |
| ! | CAATGTTGTTGCTGTTGTCA+TGG | + | chr1_3:4266800-4266819 | None:intergenic | 40.0% |
| ACAATCATCCACGTCAGATT+TGG | - | chr1_3:4266908-4266927 | Msa0098340:intron | 40.0% | |
| TTGTAACACCAAATCTGACG+TGG | + | chr1_3:4266919-4266938 | None:intergenic | 40.0% | |
| !! | CGTCAGATTTGGTGTTACAA+TGG | - | chr1_3:4266919-4266938 | Msa0098340:intron | 40.0% |
| !! | CAGATTTGGTGTTACAATGG+GGG | - | chr1_3:4266922-4266941 | Msa0098340:intron | 40.0% |
| ! | CCGGTTTGAAGTATCTTTCT+CGG | + | chr1_3:4267048-4267067 | None:intergenic | 40.0% |
| CCGAGAAAGATACTTCAAAC+CGG | - | chr1_3:4267045-4267064 | Msa0098340:intron | 40.0% | |
| TGATGTGAGATGTGACATGA+AGG | - | chr1_3:4267302-4267321 | Msa0098340:intron | 40.0% | |
| ATTGTGATTAAGTGCGTGCT+TGG | - | chr1_3:4267349-4267368 | Msa0098340:intron | 40.0% | |
| TGAGTTTGAGAGAATCACAG+TGG | - | chr1_3:4267380-4267399 | Msa0098340:intron | 40.0% | |
| ACACTCGATGCATGTTAACT+TGG | + | chr1_3:4267437-4267456 | None:intergenic | 40.0% | |
| AAGTTAACATGCATCGAGTG+TGG | - | chr1_3:4267436-4267455 | Msa0098340:intron | 40.0% | |
| ! | TGTGGTGTTCGATTTGAGTT+TGG | - | chr1_3:4267454-4267473 | Msa0098340:intron | 40.0% |
| CTATAAGCATAGCTCTTGCT+CGG | - | chr1_3:4267876-4267895 | Msa0098340:CDS | 40.0% | |
| ! | CAATGTTGTTGCTGTTGTCA+TGG | + | chr1_3:4266800-4266819 | None:intergenic | 40.0% |
| ACAATCATCCACGTCAGATT+TGG | - | chr1_3:4266908-4266927 | Msa0098340:intron | 40.0% | |
| TTGTAACACCAAATCTGACG+TGG | + | chr1_3:4266919-4266938 | None:intergenic | 40.0% | |
| !! | CGTCAGATTTGGTGTTACAA+TGG | - | chr1_3:4266919-4266938 | Msa0098340:intron | 40.0% |
| !! | CAGATTTGGTGTTACAATGG+GGG | - | chr1_3:4266922-4266941 | Msa0098340:intron | 40.0% |
| ! | CCGGTTTGAAGTATCTTTCT+CGG | + | chr1_3:4267048-4267067 | None:intergenic | 40.0% |
| CCGAGAAAGATACTTCAAAC+CGG | - | chr1_3:4267045-4267064 | Msa0098340:intron | 40.0% | |
| TGATGTGAGATGTGACATGA+AGG | - | chr1_3:4267302-4267321 | Msa0098340:intron | 40.0% | |
| ATTGTGATTAAGTGCGTGCT+TGG | - | chr1_3:4267349-4267368 | Msa0098340:intron | 40.0% | |
| TGAGTTTGAGAGAATCACAG+TGG | - | chr1_3:4267380-4267399 | Msa0098340:intron | 40.0% | |
| ACACTCGATGCATGTTAACT+TGG | + | chr1_3:4267437-4267456 | None:intergenic | 40.0% | |
| AAGTTAACATGCATCGAGTG+TGG | - | chr1_3:4267436-4267455 | Msa0098340:intron | 40.0% | |
| ! | TGTGGTGTTCGATTTGAGTT+TGG | - | chr1_3:4267454-4267473 | Msa0098340:intron | 40.0% |
| CTATAAGCATAGCTCTTGCT+CGG | - | chr1_3:4267876-4267895 | Msa0098340:CDS | 40.0% | |
| GACAAAAATGAAGGAGGGGA+TGG | - | chr1_3:4266843-4266862 | Msa0098340:CDS | 45.0% | |
| TGAGCTAGCCCTCAATAACA+AGG | + | chr1_3:4266877-4266896 | None:intergenic | 45.0% | |
| !! | TTATTGAGGGCTAGCTCAGA+TGG | - | chr1_3:4266879-4266898 | Msa0098340:intron | 45.0% |
| GAAGCGATTAAGGTGCATGA+AGG | - | chr1_3:4266950-4266969 | Msa0098340:intron | 45.0% | |
| AAACCCGGTTCAAAGGACAA+CGG | - | chr1_3:4266995-4267014 | Msa0098340:intron | 45.0% | |
| AAGTACCTGAGAATCCTTGG+AGG | + | chr1_3:4267185-4267204 | None:intergenic | 45.0% | |
| GACAAGTACCTGAGAATCCT+TGG | + | chr1_3:4267188-4267207 | None:intergenic | 45.0% | |
| TAAGTGCGTGCTTGGATTTG+CGG | - | chr1_3:4267357-4267376 | Msa0098340:intron | 45.0% | |
| AGTGTGTAAAGGTAGCAGTG+TGG | + | chr1_3:4267850-4267869 | None:intergenic | 45.0% | |
| GGACTATGGAAGGAAGACTT+GGG | - | chr1_3:4267897-4267916 | Msa0098340:CDS | 45.0% | |
| GACAAAAATGAAGGAGGGGA+TGG | - | chr1_3:4266843-4266862 | Msa0098340:CDS | 45.0% | |
| TGAGCTAGCCCTCAATAACA+AGG | + | chr1_3:4266877-4266896 | None:intergenic | 45.0% | |
| !! | TTATTGAGGGCTAGCTCAGA+TGG | - | chr1_3:4266879-4266898 | Msa0098340:intron | 45.0% |
| GAAGCGATTAAGGTGCATGA+AGG | - | chr1_3:4266950-4266969 | Msa0098340:intron | 45.0% | |
| AAACCCGGTTCAAAGGACAA+CGG | - | chr1_3:4266995-4267014 | Msa0098340:intron | 45.0% | |
| AAGTACCTGAGAATCCTTGG+AGG | + | chr1_3:4267185-4267204 | None:intergenic | 45.0% | |
| GACAAGTACCTGAGAATCCT+TGG | + | chr1_3:4267188-4267207 | None:intergenic | 45.0% | |
| TAAGTGCGTGCTTGGATTTG+CGG | - | chr1_3:4267357-4267376 | Msa0098340:intron | 45.0% | |
| AGTGTGTAAAGGTAGCAGTG+TGG | + | chr1_3:4267850-4267869 | None:intergenic | 45.0% | |
| GGACTATGGAAGGAAGACTT+GGG | - | chr1_3:4267897-4267916 | Msa0098340:CDS | 45.0% | |
| !! | TGGTGTTACAATGGGGGAAC+AGG | - | chr1_3:4266928-4266947 | Msa0098340:intron | 50.0% |
| GAACCGTTGTCCTTTGAACC+GGG | + | chr1_3:4267001-4267020 | None:intergenic | 50.0% | |
| CGAACCGTTGTCCTTTGAAC+CGG | + | chr1_3:4267002-4267021 | None:intergenic | 50.0% | |
| TCAAAGGACAACGGTTCGAG+TGG | - | chr1_3:4267004-4267023 | Msa0098340:intron | 50.0% | |
| TCTCGGTCCTAATTACCCTC+CGG | + | chr1_3:4267031-4267050 | None:intergenic | 50.0% | |
| CAGTGTGGGATGTTCCAAAC+CGG | + | chr1_3:4267067-4267086 | None:intergenic | 50.0% | |
| AACCTCCTCCAAGGATTCTC+AGG | - | chr1_3:4267177-4267196 | Msa0098340:intron | 50.0% | |
| TACCTGAGAATCCTTGGAGG+AGG | + | chr1_3:4267182-4267201 | None:intergenic | 50.0% | |
| TTGTGATTGCTGCGCGATTG+TGG | - | chr1_3:4267530-4267549 | Msa0098340:intron | 50.0% | |
| CATAGCTCTTGCTCGGACTA+TGG | - | chr1_3:4267883-4267902 | Msa0098340:CDS | 50.0% | |
| CGGACTATGGAAGGAAGACT+TGG | - | chr1_3:4267896-4267915 | Msa0098340:CDS | 50.0% | |
| AATTACCTCCCCAGCTTGGT+TGG | + | chr1_3:4267975-4267994 | None:intergenic | 50.0% | |
| AGTGAATTACCTCCCCAGCT+TGG | + | chr1_3:4267979-4267998 | None:intergenic | 50.0% | |
| !! | TGGTGTTACAATGGGGGAAC+AGG | - | chr1_3:4266928-4266947 | Msa0098340:intron | 50.0% |
| GAACCGTTGTCCTTTGAACC+GGG | + | chr1_3:4267001-4267020 | None:intergenic | 50.0% | |
| CGAACCGTTGTCCTTTGAAC+CGG | + | chr1_3:4267002-4267021 | None:intergenic | 50.0% | |
| TCAAAGGACAACGGTTCGAG+TGG | - | chr1_3:4267004-4267023 | Msa0098340:intron | 50.0% | |
| TCTCGGTCCTAATTACCCTC+CGG | + | chr1_3:4267031-4267050 | None:intergenic | 50.0% | |
| CAGTGTGGGATGTTCCAAAC+CGG | + | chr1_3:4267067-4267086 | None:intergenic | 50.0% | |
| AACCTCCTCCAAGGATTCTC+AGG | - | chr1_3:4267177-4267196 | Msa0098340:intron | 50.0% | |
| TACCTGAGAATCCTTGGAGG+AGG | + | chr1_3:4267182-4267201 | None:intergenic | 50.0% | |
| TTGTGATTGCTGCGCGATTG+TGG | - | chr1_3:4267530-4267549 | Msa0098340:intron | 50.0% | |
| CATAGCTCTTGCTCGGACTA+TGG | - | chr1_3:4267883-4267902 | Msa0098340:CDS | 50.0% | |
| CGGACTATGGAAGGAAGACT+TGG | - | chr1_3:4267896-4267915 | Msa0098340:CDS | 50.0% | |
| AATTACCTCCCCAGCTTGGT+TGG | + | chr1_3:4267975-4267994 | None:intergenic | 50.0% | |
| AGTGAATTACCTCCCCAGCT+TGG | + | chr1_3:4267979-4267998 | None:intergenic | 50.0% | |
| GGGGGAACAGGAAGCGATTA+AGG | - | chr1_3:4266940-4266959 | Msa0098340:intron | 55.0% | |
| GAGTGGACCGGAGGGTAATT+AGG | - | chr1_3:4267021-4267040 | Msa0098340:intron | 55.0% | |
| AGGAGGTTGCTGTGGAGAAG+GGG | + | chr1_3:4267165-4267184 | None:intergenic | 55.0% | |
| GAGGAGGTTGCTGTGGAGAA+GGG | + | chr1_3:4267166-4267185 | None:intergenic | 55.0% | |
| ATCCTTGGAGGAGGTTGCTG+TGG | + | chr1_3:4267173-4267192 | None:intergenic | 55.0% | |
| GCTCTTGCTCGGACTATGGA+AGG | - | chr1_3:4267887-4267906 | Msa0098340:CDS | 55.0% | |
| GATACTTGCCCTCCAGCTCT+GGG | - | chr1_3:4267919-4267938 | Msa0098340:CDS | 55.0% | |
| AAAAGGGAGCTACCCAGAGC+TGG | + | chr1_3:4267934-4267953 | None:intergenic | 55.0% | |
| !!! | AGCTCTGGGTAGCTCCCTTT+TGG | - | chr1_3:4267933-4267952 | Msa0098340:CDS | 55.0% |
| ! | GGTAGCTCCCTTTTGGCCAA+TGG | - | chr1_3:4267940-4267959 | Msa0098340:CDS | 55.0% |
| ACCAGCGCCATTGGCCAAAA+GGG | + | chr1_3:4267950-4267969 | None:intergenic | 55.0% | |
| GGGGGAACAGGAAGCGATTA+AGG | - | chr1_3:4266940-4266959 | Msa0098340:intron | 55.0% | |
| GAGTGGACCGGAGGGTAATT+AGG | - | chr1_3:4267021-4267040 | Msa0098340:intron | 55.0% | |
| AGGAGGTTGCTGTGGAGAAG+GGG | + | chr1_3:4267165-4267184 | None:intergenic | 55.0% | |
| GAGGAGGTTGCTGTGGAGAA+GGG | + | chr1_3:4267166-4267185 | None:intergenic | 55.0% | |
| ATCCTTGGAGGAGGTTGCTG+TGG | + | chr1_3:4267173-4267192 | None:intergenic | 55.0% | |
| GCTCTTGCTCGGACTATGGA+AGG | - | chr1_3:4267887-4267906 | Msa0098340:CDS | 55.0% | |
| GATACTTGCCCTCCAGCTCT+GGG | - | chr1_3:4267919-4267938 | Msa0098340:CDS | 55.0% | |
| AAAAGGGAGCTACCCAGAGC+TGG | + | chr1_3:4267934-4267953 | None:intergenic | 55.0% | |
| !!! | AGCTCTGGGTAGCTCCCTTT+TGG | - | chr1_3:4267933-4267952 | Msa0098340:CDS | 55.0% |
| ! | GGTAGCTCCCTTTTGGCCAA+TGG | - | chr1_3:4267940-4267959 | Msa0098340:CDS | 55.0% |
| ACCAGCGCCATTGGCCAAAA+GGG | + | chr1_3:4267950-4267969 | None:intergenic | 55.0% | |
| GGACAACGGTTCGAGTGGAC+CGG | - | chr1_3:4267009-4267028 | Msa0098340:intron | 60.0% | |
| AACGGTTCGAGTGGACCGGA+GGG | - | chr1_3:4267013-4267032 | Msa0098340:intron | 60.0% | |
| GGGGCACGTTGACGAAGACT+AGG | + | chr1_3:4267146-4267165 | None:intergenic | 60.0% | |
| GGAGGAGGTTGCTGTGGAGA+AGG | + | chr1_3:4267167-4267186 | None:intergenic | 60.0% | |
| CTCCACAGCAACCTCCTCCA+AGG | - | chr1_3:4267168-4267187 | Msa0098340:intron | 60.0% | |
| TTGCTGCGCGATTGTGGTCG+AGG | - | chr1_3:4267536-4267555 | Msa0098340:intron | 60.0% | |
| GGATACTTGCCCTCCAGCTC+TGG | - | chr1_3:4267918-4267937 | Msa0098340:CDS | 60.0% | |
| ! | TCCCTTTTGGCCAATGGCGC+TGG | - | chr1_3:4267946-4267965 | Msa0098340:CDS | 60.0% |
| CACCAGCGCCATTGGCCAAA+AGG | + | chr1_3:4267951-4267970 | None:intergenic | 60.0% | |
| TGGTTGGACACCAGCGCCAT+TGG | + | chr1_3:4267959-4267978 | None:intergenic | 60.0% | |
| CGCTGGTGTCCAACCAAGCT+GGG | - | chr1_3:4267963-4267982 | Msa0098340:CDS | 60.0% | |
| GCTGGTGTCCAACCAAGCTG+GGG | - | chr1_3:4267964-4267983 | Msa0098340:CDS | 60.0% | |
| GGACAACGGTTCGAGTGGAC+CGG | - | chr1_3:4267009-4267028 | Msa0098340:intron | 60.0% | |
| AACGGTTCGAGTGGACCGGA+GGG | - | chr1_3:4267013-4267032 | Msa0098340:intron | 60.0% | |
| GGGGCACGTTGACGAAGACT+AGG | + | chr1_3:4267146-4267165 | None:intergenic | 60.0% | |
| GGAGGAGGTTGCTGTGGAGA+AGG | + | chr1_3:4267167-4267186 | None:intergenic | 60.0% | |
| CTCCACAGCAACCTCCTCCA+AGG | - | chr1_3:4267168-4267187 | Msa0098340:intron | 60.0% | |
| TTGCTGCGCGATTGTGGTCG+AGG | - | chr1_3:4267536-4267555 | Msa0098340:intron | 60.0% | |
| GGATACTTGCCCTCCAGCTC+TGG | - | chr1_3:4267918-4267937 | Msa0098340:CDS | 60.0% | |
| ! | TCCCTTTTGGCCAATGGCGC+TGG | - | chr1_3:4267946-4267965 | Msa0098340:CDS | 60.0% |
| CACCAGCGCCATTGGCCAAA+AGG | + | chr1_3:4267951-4267970 | None:intergenic | 60.0% | |
| TGGTTGGACACCAGCGCCAT+TGG | + | chr1_3:4267959-4267978 | None:intergenic | 60.0% | |
| CGCTGGTGTCCAACCAAGCT+GGG | - | chr1_3:4267963-4267982 | Msa0098340:CDS | 60.0% | |
| GCTGGTGTCCAACCAAGCTG+GGG | - | chr1_3:4267964-4267983 | Msa0098340:CDS | 60.0% | |
| CAACGGTTCGAGTGGACCGG+AGG | - | chr1_3:4267012-4267031 | Msa0098340:intron | 65.0% | |
| GGGAGCTACCCAGAGCTGGA+GGG | + | chr1_3:4267930-4267949 | None:intergenic | 65.0% | |
| AGGGAGCTACCCAGAGCTGG+AGG | + | chr1_3:4267931-4267950 | None:intergenic | 65.0% | |
| ! | GCGCTGGTGTCCAACCAAGC+TGG | - | chr1_3:4267962-4267981 | Msa0098340:CDS | 65.0% |
| GGTGTCCAACCAAGCTGGGG+AGG | - | chr1_3:4267967-4267986 | Msa0098340:CDS | 65.0% | |
| CAACGGTTCGAGTGGACCGG+AGG | - | chr1_3:4267012-4267031 | Msa0098340:intron | 65.0% | |
| GGGAGCTACCCAGAGCTGGA+GGG | + | chr1_3:4267930-4267949 | None:intergenic | 65.0% | |
| AGGGAGCTACCCAGAGCTGG+AGG | + | chr1_3:4267931-4267950 | None:intergenic | 65.0% | |
| ! | GCGCTGGTGTCCAACCAAGC+TGG | - | chr1_3:4267962-4267981 | Msa0098340:CDS | 65.0% |
| GGTGTCCAACCAAGCTGGGG+AGG | - | chr1_3:4267967-4267986 | Msa0098340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4266774 | 4268029 | 4266774 | ID=Msa0098340;Name=Msa0098340 |
| chr1_3 | mRNA | 4266774 | 4268029 | 4266774 | ID=Msa0098340-mRNA-1;Parent=Msa0098340;Name=Msa0098340-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.5|1|1|2|0|181 |
| chr1_3 | exon | 4267605 | 4268029 | 4267605 | ID=Msa0098340-mRNA-1:exon:1434;Parent=Msa0098340-mRNA-1 |
| chr1_3 | exon | 4266774 | 4266894 | 4266774 | ID=Msa0098340-mRNA-1:exon:1433;Parent=Msa0098340-mRNA-1 |
| chr1_3 | CDS | 4267605 | 4268029 | 4267605 | ID=Msa0098340-mRNA-1:cds;Parent=Msa0098340-mRNA-1 |
| chr1_3 | CDS | 4266774 | 4266894 | 4266774 | ID=Msa0098340-mRNA-1:cds;Parent=Msa0098340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
