AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0203310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203310 MtrunA17_Chr2g0301051 99.219 128 1 0 1 128 1 128 3.79e-89 254
Msa0203310 MtrunA17_Chr8g0344441 83.594 128 21 0 1 128 1 128 2.01e-77 224
Msa0203310 MtrunA17_Chr4g0044211 39.726 73 43 1 14 85 7 79 3.14e-13 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203310 AT3G14080.2 82.031 128 23 0 1 128 1 128 1.02e-76 223
Msa0203310 AT3G14080.1 82.031 128 23 0 1 128 1 128 1.02e-76 223
Msa0203310 AT1G19120.1 80.469 128 25 0 1 128 1 128 3.08e-72 212
Msa0203310 AT3G14080.4 84.112 107 17 0 22 128 12 118 3.26e-63 189
Msa0203310 AT3G14080.3 83.951 81 13 0 1 81 1 81 3.22e-46 145
Msa0203310 AT1G65700.2 42.667 75 42 1 12 85 4 78 7.24e-14 63.2
Msa0203310 AT1G65700.1 42.667 75 42 1 12 85 4 78 7.24e-14 63.2

Find 57 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTGTTGTTATTGAATT+TGG 0.068528 2_1:+27080355 Msa0203310:three_prime_UTR
GGGGAAAATGTTGTCTTAAT+TGG 0.182187 2_1:+27075916 Msa0203310:CDS
TTGAGCTCTTAAATTCTATT+TGG 0.201847 2_1:+27080391 Msa0203310:three_prime_UTR
CTTTATTGTGATGTCCCTTT+AGG 0.240623 2_1:+27075877 Msa0203310:CDS
GAAAGTGGAAAATTTCTTAA+TGG 0.242958 2_1:+27080435 Msa0203310:three_prime_UTR
GCGAGATGGGCGAAAACTTT+TGG 0.254662 2_1:+27075672 Msa0203310:CDS
CAATATGGAAATTGATGTTT+TGG 0.275099 2_1:+27080288 Msa0203310:three_prime_UTR
TAAGATTCACCAGTTTAGTT+TGG 0.306423 2_1:-27074232 None:intergenic
AATACTACACAGCTAGTAAT+TGG 0.315912 2_1:+27080246 Msa0203310:three_prime_UTR
ACAGCTAATGTTGTTCTAGA+AGG 0.335927 2_1:+27075826 Msa0203310:intron
TTACGCTCATTTGATCAGTT+TGG 0.386762 2_1:+27075700 Msa0203310:CDS
GTTTCCAATCCAAACTAAAC+TGG 0.398829 2_1:+27074223 Msa0203310:five_prime_UTR
ATGAATCATAGTGACTATAT+TGG 0.403621 2_1:-27080327 None:intergenic
TTCTTGTCCTGTTGCGAGAT+GGG 0.404019 2_1:+27075659 Msa0203310:CDS
GTAGAGAGTAAAAGTTCATC+AGG 0.414946 2_1:-27074714 None:intergenic
TTCACCAGTTTAGTTTGGAT+TGG 0.418160 2_1:-27074227 None:intergenic
TTTCCCCACGAATTACATAA+AGG 0.423209 2_1:-27075900 None:intergenic
CTGCATTAAAATTTGCAGAT+AGG 0.423598 2_1:-27080125 None:intergenic
GAAGAATTGGCTCAATGTCT+TGG 0.438471 2_1:+27074685 Msa0203310:exon
CACCAGCTTGATTATTAAGA+TGG 0.440617 2_1:-27080100 None:intergenic
GGTGGGAAGAATAAGTAATA+TGG 0.447803 2_1:+27080175 Msa0203310:three_prime_UTR
AATTCAATAACAACAATTTG+AGG 0.456837 2_1:-27080352 None:intergenic
GAATTACATAAAGGCCTAAA+GGG 0.460885 2_1:-27075891 None:intergenic
AAGAATTGGCTCAATGTCTT+GGG 0.465878 2_1:+27074686 Msa0203310:exon
ACCAAATTCACCGATCGAAA+AGG 0.467006 2_1:+27074369 Msa0203310:five_prime_UTR
GACTCAAGTTGGATAACAAT+GGG 0.476388 2_1:+27080154 Msa0203310:three_prime_UTR
ATAATCAGACGCAGTGAAAG+TGG 0.477502 2_1:+27080420 Msa0203310:three_prime_UTR
TGTTGTCTTAATTGGAGAGC+TGG 0.479444 2_1:+27075924 Msa0203310:CDS
ATTGTTGTTATTGAATTTGG+AGG 0.483077 2_1:+27080358 Msa0203310:three_prime_UTR
TGAAGGGAACTATGAGGAAA+AGG 0.483782 2_1:+27080044 Msa0203310:CDS
CTTCTTGTCCTGTTGCGAGA+TGG 0.485695 2_1:+27075658 Msa0203310:CDS
ATTGTTATCCAACTTGAGTC+CGG 0.485837 2_1:-27080151 None:intergenic
CGAATTACATAAAGGCCTAA+AGG 0.486521 2_1:-27075892 None:intergenic
ATTCAATAACAACAATTTGA+GGG 0.487754 2_1:-27080351 None:intergenic
TTAGGCCTTTATGTAATTCG+TGG 0.493934 2_1:+27075895 Msa0203310:CDS
TCAATTTCCATATTGACCTA+TGG 0.501505 2_1:-27080280 None:intergenic
ATTGATTTAGGACTTGGAAA+AGG 0.502178 2_1:+27076032 Msa0203310:intron
TGCAGCTGCCGGACTCAAGT+TGG 0.523066 2_1:+27080143 Msa0203310:three_prime_UTR
TAGGCCTTTATGTAATTCGT+GGG 0.531905 2_1:+27075896 Msa0203310:CDS
TACCATCTTAATAATCAAGC+TGG 0.539624 2_1:+27080098 Msa0203310:three_prime_UTR
GGGAACTATGAGGAAAAGGA+TGG 0.544721 2_1:+27080048 Msa0203310:CDS
ACGCGATGCTAGTGATCTGA+AGG 0.547627 2_1:+27080027 Msa0203310:CDS
GTGATCTGAAGGGAACTATG+AGG 0.581281 2_1:+27080038 Msa0203310:CDS
GATTTAGGACTTGGAAAAGG+AGG 0.581809 2_1:+27076035 Msa0203310:intron
GTCAGAGGCTGACATAAGAA+AGG 0.585967 2_1:+27076083 Msa0203310:CDS
AGCTTGATTATTAAGATGGT+AGG 0.589367 2_1:-27080096 None:intergenic
GGACTCAAGTTGGATAACAA+TGG 0.591289 2_1:+27080153 Msa0203310:three_prime_UTR
GCGTGTGAACGAGTGATTGT+TGG 0.605153 2_1:+27075850 Msa0203310:CDS
TCAAGTTGGATAACAATGGG+TGG 0.610601 2_1:+27080157 Msa0203310:three_prime_UTR
GTGAATCTTATAGTTCTGAA+AGG 0.622137 2_1:+27074245 Msa0203310:five_prime_UTR
CAAGTTGGATAACAATGGGT+GGG 0.624420 2_1:+27080158 Msa0203310:three_prime_UTR
CATCTTAATAATCAAGCTGG+TGG 0.659454 2_1:+27080101 Msa0203310:three_prime_UTR
CGCGATGCTAGTGATCTGAA+GGG 0.662588 2_1:+27080028 Msa0203310:CDS
ACATATGACATGTGTGTCAG+AGG 0.664445 2_1:+27076068 Msa0203310:CDS
AGGCCTTTATGTAATTCGTG+GGG 0.677188 2_1:+27075897 Msa0203310:CDS
GACACACATGTCATATGTGG+TGG 0.683154 2_1:-27076063 None:intergenic
TCTGACACACATGTCATATG+TGG 0.686933 2_1:-27076066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTACAAAAATAAAAATATTA+TGG - chr2_1:27078004-27078023 None:intergenic 10.0%
!!! TGCTATATTATATTTTAATT+AGG + chr2_1:27078114-27078133 Msa0203310:intron 10.0%
!!! TATATTATATTTTAATTAGG+AGG + chr2_1:27078117-27078136 Msa0203310:intron 10.0%
!! ATAGTTCTTGAAAAAATAAT+TGG + chr2_1:27076118-27076137 Msa0203310:intron 15.0%
!!! AATACAATTGACTTTTTAAA+CGG + chr2_1:27076538-27076557 Msa0203310:intron 15.0%
!!! ATTTAGCTTCTATTAATAAT+AGG - chr2_1:27076705-27076724 None:intergenic 15.0%
!!! TAGAAACAAATATTCAATTT+TGG + chr2_1:27076831-27076850 Msa0203310:intron 15.0%
!! CTATAAAGATAAAACAATAA+GGG - chr2_1:27077906-27077925 None:intergenic 15.0%
!!! CTTTTTTTTTTTTTCTTTCA+GGG - chr2_1:27078054-27078073 None:intergenic 15.0%
!!! TCTTTTTTTTTTTTTCTTTC+AGG - chr2_1:27078055-27078074 None:intergenic 15.0%
!!! AGTTACATGTTTTTATAATT+AGG + chr2_1:27078142-27078161 Msa0203310:intron 15.0%
!!! TTTTATAATTAGGACATTTA+TGG + chr2_1:27078152-27078171 Msa0203310:intron 15.0%
!!! AATATGTTTTTGATAAAAAC+CGG - chr2_1:27078368-27078387 None:intergenic 15.0%
!!! AAAAATAATTAGTGTTTTGA+AGG - chr2_1:27078803-27078822 None:intergenic 15.0%
!!! CAATAAATTATTCGTTTTTT+CGG + chr2_1:27079724-27079743 Msa0203310:intron 15.0%
!!! CAATTTTATTTCAATGGAAA+AGG - chr2_1:27074453-27074472 None:intergenic 20.0%
!! TTTCCATTGAAATAAAATTG+TGG + chr2_1:27074453-27074472 Msa0203310:intron 20.0%
!! TTCCATTGAAATAAAATTGT+GGG + chr2_1:27074454-27074473 Msa0203310:intron 20.0%
!!! ATTTTTTCTTGACGAAATTT+TGG + chr2_1:27074523-27074542 Msa0203310:intron 20.0%
!!! TTTTTTCTTGACGAAATTTT+GGG + chr2_1:27074524-27074543 Msa0203310:intron 20.0%
!! ATTTGTATATCAATTGTTGT+TGG + chr2_1:27075021-27075040 Msa0203310:intron 20.0%
!!! TAAACTACCATTTTATAAAC+CGG - chr2_1:27075236-27075255 None:intergenic 20.0%
!! TAGTTCTTATGTATTTAATC+TGG + chr2_1:27075542-27075561 Msa0203310:intron 20.0%
!!! GTATTCTTTATCATTGATTT+AGG + chr2_1:27076020-27076039 Msa0203310:intron 20.0%
!! TTTAAATAATCTACAACGTT+TGG - chr2_1:27076289-27076308 None:intergenic 20.0%
!!! ATTTAAAGATGATTTGTTGA+AGG + chr2_1:27076302-27076321 Msa0203310:intron 20.0%
!!! ATTCTATCTAACTCATTTTT+TGG - chr2_1:27076637-27076656 None:intergenic 20.0%
!! CTTGATATTGAACATATATT+TGG + chr2_1:27076761-27076780 Msa0203310:intron 20.0%
!! TAAGCAATATTATAAAGCAT+TGG - chr2_1:27076969-27076988 None:intergenic 20.0%
!!! TTTAAAAAGCATAATTCACT+TGG - chr2_1:27077096-27077115 None:intergenic 20.0%
!! GTTATCCTCTAAATATTTAT+CGG + chr2_1:27077275-27077294 Msa0203310:intron 20.0%
!! CCTATAAAGATAAAACAATA+AGG - chr2_1:27077907-27077926 None:intergenic 20.0%
!!! CCTTATTGTTTTATCTTTAT+AGG + chr2_1:27077904-27077923 Msa0203310:intron 20.0%
!!! ATTTTATCATAATTTTGGGT+TGG - chr2_1:27077975-27077994 None:intergenic 20.0%
!! ACCCAAAATTATGATAAAAT+AGG + chr2_1:27077975-27077994 Msa0203310:intron 20.0%
!!! CCCTATTTTATCATAATTTT+GGG - chr2_1:27077979-27077998 None:intergenic 20.0%
!! CCCAAAATTATGATAAAATA+GGG + chr2_1:27077976-27077995 Msa0203310:intron 20.0%
!!! ACCCTATTTTATCATAATTT+TGG - chr2_1:27077980-27077999 None:intergenic 20.0%
!! AAAAAAAAGAAACTGTTGAA+CGG + chr2_1:27078065-27078084 Msa0203310:intron 20.0%
!!! ATTAATTTGTATTTTGGTAC+CGG + chr2_1:27078346-27078365 Msa0203310:intron 20.0%
!! ATTAAATGATTGTCTTATAG+TGG + chr2_1:27078882-27078901 Msa0203310:intron 20.0%
!! TAAGAATTCTAAACTGAATT+GGG + chr2_1:27079572-27079591 Msa0203310:intron 20.0%
!!! TAAGATGTATTTTGAATTCT+AGG + chr2_1:27079609-27079628 Msa0203310:intron 20.0%
!!! AAGATGTATTTTGAATTCTA+GGG + chr2_1:27079610-27079629 Msa0203310:intron 20.0%
!!! TCCTCAACAATTTATTTTTA+TGG + chr2_1:27079832-27079851 Msa0203310:intron 20.0%
!!! CCTCAACAATTTATTTTTAT+GGG + chr2_1:27079833-27079852 Msa0203310:intron 20.0%
!! ATCATAAAACTACTCTAATT+TGG + chr2_1:27079944-27079963 Msa0203310:intron 20.0%
!! ATTCAATAACAACAATTTGA+GGG - chr2_1:27080354-27080373 None:intergenic 20.0%
!! AATTCAATAACAACAATTTG+AGG - chr2_1:27080355-27080374 None:intergenic 20.0%
!!! CAAATTGTTGTTATTGAATT+TGG + chr2_1:27080355-27080374 Msa0203310:three_prime_UTR 20.0%
!! AAAGCGTTTAACATGTTAAA+GGG - chr2_1:27074406-27074425 None:intergenic 25.0%
!!! AAAAGCGTTTAACATGTTAA+AGG - chr2_1:27074407-27074426 None:intergenic 25.0%
!!! AACCCACAATTTTATTTCAA+TGG - chr2_1:27074459-27074478 None:intergenic 25.0%
!!! AAGCTTTGATTTTTGAATTG+TGG + chr2_1:27074496-27074515 Msa0203310:intron 25.0%
!!! AGCTTTGATTTTTGAATTGT+GGG + chr2_1:27074497-27074516 Msa0203310:intron 25.0%
!!! ATTTGATAATGTGTATGTAG+AGG + chr2_1:27074560-27074579 Msa0203310:intron 25.0%
!!! TTTGATAATGTGTATGTAGA+GGG + chr2_1:27074561-27074580 Msa0203310:intron 25.0%
!!! TTAAAGTTTGTTGCTTTTTC+AGG + chr2_1:27074655-27074674 Msa0203310:intron 25.0%
! TCTCAAATTATTATCGATGT+CGG - chr2_1:27074840-27074859 None:intergenic 25.0%
!!! AATTTCTCTGTTTTTTCCAT+GGG + chr2_1:27074998-27075017 Msa0203310:intron 25.0%
! GAAGAATTAACTTTACAGTA+AGG - chr2_1:27075187-27075206 None:intergenic 25.0%
!! TTCAAACATTTTCATGTGAT+AGG - chr2_1:27075447-27075466 None:intergenic 25.0%
! TATTTAATCTGGTTATGTAG+AGG + chr2_1:27075553-27075572 Msa0203310:intron 25.0%
! TATTAACTGACAATTTGATG+TGG + chr2_1:27075794-27075813 Msa0203310:intron 25.0%
!!! TTTATCATTGATTTAGGACT+TGG + chr2_1:27076026-27076045 Msa0203310:intron 25.0%
!! AAATGACTGTTTGGAATATA+AGG + chr2_1:27076147-27076166 Msa0203310:intron 25.0%
!! AATGACTGTTTGGAATATAA+GGG + chr2_1:27076148-27076167 Msa0203310:intron 25.0%
! AAACATGCATTAATTGATCT+TGG - chr2_1:27076349-27076368 None:intergenic 25.0%
! TTAAAACTGGTGTAACTAAT+TGG - chr2_1:27076417-27076436 None:intergenic 25.0%
! ACTATTTATAGGCTAATCTA+AGG - chr2_1:27076477-27076496 None:intergenic 25.0%
! GTTAGAGAGAAACTATTTAT+AGG - chr2_1:27076488-27076507 None:intergenic 25.0%
! AAATGAATCAGTAAGGTATA+TGG - chr2_1:27076907-27076926 None:intergenic 25.0%
! CTAAAACAAATGAATCAGTA+AGG - chr2_1:27076914-27076933 None:intergenic 25.0%
!!! CTTACTGATTCATTTGTTTT+AGG + chr2_1:27076912-27076931 Msa0203310:intron 25.0%
!!! TCATTTGTTTTAGGTTGAAT+TGG + chr2_1:27076921-27076940 Msa0203310:intron 25.0%
!! TTCCAAGAATTTGAAATGTT+GGG + chr2_1:27077220-27077239 Msa0203310:intron 25.0%
! AACTTAAACAGAACTTTCAA+GGG - chr2_1:27077258-27077277 None:intergenic 25.0%
! TAACTTAAACAGAACTTTCA+AGG - chr2_1:27077259-27077278 None:intergenic 25.0%
! TAAGACCGATAAATATTTAG+AGG - chr2_1:27077283-27077302 None:intergenic 25.0%
! AAATGATTGTCTATTGTCAA+GGG - chr2_1:27077340-27077359 None:intergenic 25.0%
! AATAGACAATCATTTCTGAT+AGG + chr2_1:27077345-27077364 Msa0203310:intron 25.0%
!! CATGTGATTCTGTTATTTAA+GGG + chr2_1:27077510-27077529 Msa0203310:intron 25.0%
! TTATTTAAGGGACTGATAAT+AGG + chr2_1:27077522-27077541 Msa0203310:intron 25.0%
!! ATTTTGTAGATAATTCTGTC+AGG + chr2_1:27077563-27077582 Msa0203310:intron 25.0%
! TAATAGAACTCAAAACTTCA+AGG - chr2_1:27077685-27077704 None:intergenic 25.0%
!!! TTTTTTTTTTCTTTCAGGGA+AGG - chr2_1:27078050-27078069 None:intergenic 25.0%
! ATACTACATACAAGAGATTA+TGG + chr2_1:27078505-27078524 Msa0203310:intron 25.0%
! TAAATTCATGGTTATCCATA+GGG + chr2_1:27078566-27078585 Msa0203310:intron 25.0%
!!! TTTGTAAATCCAATTTGTTG+CGG - chr2_1:27078596-27078615 None:intergenic 25.0%
! AATTGGATTTACAAAAGTCA+TGG + chr2_1:27078601-27078620 Msa0203310:intron 25.0%
! AACTAATTTCTATGTGAACT+TGG + chr2_1:27078717-27078736 Msa0203310:intron 25.0%
! ACTAATTTCTATGTGAACTT+GGG + chr2_1:27078718-27078737 Msa0203310:intron 25.0%
!! TCATTTAATTGTCGCATTTT+GGG - chr2_1:27078871-27078890 None:intergenic 25.0%
!! ATCATTTAATTGTCGCATTT+TGG - chr2_1:27078872-27078891 None:intergenic 25.0%
! TAATTTGAATCCATTTGCAA+AGG + chr2_1:27078966-27078985 Msa0203310:intron 25.0%
! ATGTTCAAAATTACTAGAGA+GGG - chr2_1:27079175-27079194 None:intergenic 25.0%
! AATGTTCAAAATTACTAGAG+AGG - chr2_1:27079176-27079195 None:intergenic 25.0%
!! TCTAGTAATTTTGAACATTG+TGG + chr2_1:27079177-27079196 Msa0203310:intron 25.0%
! GCATAAAAGTTCAAAATCAA+CGG - chr2_1:27079216-27079235 None:intergenic 25.0%
!! TGTTCATCAGTTTTCAATTT+TGG + chr2_1:27079282-27079301 Msa0203310:intron 25.0%
!!! CATTTTAAAAGCCAATTTTC+TGG + chr2_1:27079521-27079540 Msa0203310:intron 25.0%
! CTAAGAATTCTAAACTGAAT+TGG + chr2_1:27079571-27079590 Msa0203310:intron 25.0%
! AAGAATTCTAAACTGAATTG+GGG + chr2_1:27079573-27079592 Msa0203310:intron 25.0%
!! TAATTTGTCATGACTGAATT+AGG - chr2_1:27079676-27079695 None:intergenic 25.0%
! ATTCAGTCATGACAAATTAT+TGG + chr2_1:27079677-27079696 Msa0203310:intron 25.0%
! TGAGTGAATAATTGAAAACA+AGG - chr2_1:27079706-27079725 None:intergenic 25.0%
! TTTCATATTCCTAGAAATGT+CGG + chr2_1:27079787-27079806 Msa0203310:intron 25.0%
! CCCATAAAAATAAATTGTTG+AGG - chr2_1:27079836-27079855 None:intergenic 25.0%
!!! ATTGGTATTTTTTGTACCAT+AGG + chr2_1:27080264-27080283 Msa0203310:three_prime_UTR 25.0%
!! CAATATGGAAATTGATGTTT+TGG + chr2_1:27080288-27080307 Msa0203310:three_prime_UTR 25.0%
! ATGAATCATAGTGACTATAT+TGG - chr2_1:27080330-27080349 None:intergenic 25.0%
!! ATTGTTGTTATTGAATTTGG+AGG + chr2_1:27080358-27080377 Msa0203310:three_prime_UTR 25.0%
! TTGAGCTCTTAAATTCTATT+TGG + chr2_1:27080391-27080410 Msa0203310:three_prime_UTR 25.0%
! GAAAGTGGAAAATTTCTTAA+TGG + chr2_1:27080435-27080454 Msa0203310:three_prime_UTR 25.0%
TAAGATTCACCAGTTTAGTT+TGG - chr2_1:27074235-27074254 None:intergenic 30.0%
!! GTGAATCTTATAGTTCTGAA+AGG + chr2_1:27074245-27074264 Msa0203310:five_prime_UTR 30.0%
! TGAAATTGAACCTTTTCGAT+CGG - chr2_1:27074382-27074401 None:intergenic 30.0%
AAGCGTTTAACATGTTAAAG+GGG - chr2_1:27074405-27074424 None:intergenic 30.0%
GAAAAGGAGAAAGAACAAAA+GGG - chr2_1:27074437-27074456 None:intergenic 30.0%
!! AGATTTTGTGTTTGAGATTG+TGG + chr2_1:27074597-27074616 Msa0203310:intron 30.0%
!! GATTTTGTGTTTGAGATTGT+GGG + chr2_1:27074598-27074617 Msa0203310:intron 30.0%
!! ATTTTGTGTTTGAGATTGTG+GGG + chr2_1:27074599-27074618 Msa0203310:intron 30.0%
GGTTAGAGTGAAATTGAATT+TGG + chr2_1:27074620-27074639 Msa0203310:intron 30.0%
AGTGAAATTGAATTTGGAGA+AGG + chr2_1:27074626-27074645 Msa0203310:intron 30.0%
AATTGAATTTGGAGAAGGTT+TGG + chr2_1:27074631-27074650 Msa0203310:intron 30.0%
!! TTCAGGTTTTGTAGAAGAAT+TGG + chr2_1:27074672-27074691 Msa0203310:intron 30.0%
CTCAAATTATTATCGATGTC+GGG - chr2_1:27074839-27074858 None:intergenic 30.0%
TTAAATGCAATCACATGTGT+CGG + chr2_1:27074871-27074890 Msa0203310:intron 30.0%
!!! CAATTTCTCTGTTTTTTCCA+TGG + chr2_1:27074997-27075016 Msa0203310:intron 30.0%
CAATTGATATACAAATCCCA+TGG - chr2_1:27075017-27075036 None:intergenic 30.0%
! GTATATCAATTGTTGTTGGA+TGG + chr2_1:27075025-27075044 Msa0203310:intron 30.0%
ACATACATGCATATGAAGAT+AGG + chr2_1:27075123-27075142 Msa0203310:intron 30.0%
CATACATGCATATGAAGATA+GGG + chr2_1:27075124-27075143 Msa0203310:intron 30.0%
!!! GAGTGTTGTGTTTTTTTCTT+TGG + chr2_1:27075282-27075301 Msa0203310:intron 30.0%
!!! TGTTGTGTTTTTTTCTTTGG+TGG + chr2_1:27075285-27075304 Msa0203310:intron 30.0%
GGATACTATCAATTATGCAA+AGG + chr2_1:27075326-27075345 Msa0203310:intron 30.0%
! ATTTTCATGTGATAGGAACA+AGG - chr2_1:27075440-27075459 None:intergenic 30.0%
TATGTAGAGGTTGAAATCAT+TGG + chr2_1:27075566-27075585 Msa0203310:intron 30.0%
AAGAAGAATGCAAGTAGAAT+TGG - chr2_1:27075732-27075751 None:intergenic 30.0%
AGAACAACATTAGCTGTAAA+TGG - chr2_1:27075823-27075842 None:intergenic 30.0%
GAATTACATAAAGGCCTAAA+GGG - chr2_1:27075894-27075913 None:intergenic 30.0%
! ATTGATTTAGGACTTGGAAA+AGG + chr2_1:27076032-27076051 Msa0203310:intron 30.0%
TGGATATTCAAATGACTGTT+TGG + chr2_1:27076138-27076157 Msa0203310:intron 30.0%
! ATGACTGTTTGGAATATAAG+GGG + chr2_1:27076149-27076168 Msa0203310:intron 30.0%
!!! TGTAGCAATGTTTTAGTAAC+TGG + chr2_1:27076187-27076206 Msa0203310:intron 30.0%
!!! ACTGGATTAGTCAGTTTTTT+AGG + chr2_1:27076205-27076224 Msa0203310:intron 30.0%
!!! CTGGATTAGTCAGTTTTTTA+GGG + chr2_1:27076206-27076225 Msa0203310:intron 30.0%
!!! TAGTCAGTTTTTTAGGGATT+TGG + chr2_1:27076212-27076231 Msa0203310:intron 30.0%
AATGCATGTTTCTTAAATGC+AGG + chr2_1:27076358-27076377 Msa0203310:intron 30.0%
ATGCATGTTTCTTAAATGCA+GGG + chr2_1:27076359-27076378 Msa0203310:intron 30.0%
!! TTAGTTACACCAGTTTTAAC+AGG + chr2_1:27076418-27076437 Msa0203310:intron 30.0%
AGAAAACCAATCCTAAGAAT+AGG - chr2_1:27076582-27076601 None:intergenic 30.0%
TGTTCAATATCAAGCTTCAA+AGG - chr2_1:27076755-27076774 None:intergenic 30.0%
!!! CTATCTATCAACTGGTTTTT+CGG + chr2_1:27076871-27076890 Msa0203310:intron 30.0%
!!! TATCTATCAACTGGTTTTTC+GGG + chr2_1:27076872-27076891 Msa0203310:intron 30.0%
! CCTTTAGAGAACAATTGAAA+CGG - chr2_1:27077179-27077198 None:intergenic 30.0%
! CTTCCAAGAATTTGAAATGT+TGG + chr2_1:27077219-27077238 Msa0203310:intron 30.0%
! TCCAAGAATTTGAAATGTTG+GGG + chr2_1:27077221-27077240 Msa0203310:intron 30.0%
GAAATGATTGTCTATTGTCA+AGG - chr2_1:27077341-27077360 None:intergenic 30.0%
TTTCGTATTGTCGCTATAAT+GGG - chr2_1:27077399-27077418 None:intergenic 30.0%
ATTATAGCGACAATACGAAA+GGG + chr2_1:27077399-27077418 Msa0203310:intron 30.0%
CCTTAAATAACAGAATCACA+TGG - chr2_1:27077512-27077531 None:intergenic 30.0%
! CCATGTGATTCTGTTATTTA+AGG + chr2_1:27077509-27077528 Msa0203310:intron 30.0%
AACTCAAAACTTCAAGGTAA+TGG - chr2_1:27077679-27077698 None:intergenic 30.0%
GAGTTCTATTAATTTCCACA+TGG + chr2_1:27077694-27077713 Msa0203310:intron 30.0%
ATTAATCGACGTAACTCTTA+TGG + chr2_1:27077800-27077819 Msa0203310:intron 30.0%
TTACATATGATGAGAGATTG+TGG - chr2_1:27077847-27077866 None:intergenic 30.0%
AAAAAACATGCAACAGCAAA+AGG + chr2_1:27077928-27077947 Msa0203310:intron 30.0%
AAAAACATGCAACAGCAAAA+GGG + chr2_1:27077929-27077948 Msa0203310:intron 30.0%
AACCTAGTCGTTACAAATAT+GGG - chr2_1:27078426-27078445 None:intergenic 30.0%
GTATGTAGTATCGTATACAT+TGG - chr2_1:27078496-27078515 None:intergenic 30.0%
!! TGAATTTAGCTTTGTTCCAA+TGG - chr2_1:27078554-27078573 None:intergenic 30.0%
TTGGAACAAAGCTAAATTCA+TGG + chr2_1:27078554-27078573 Msa0203310:intron 30.0%
CTAAATTCATGGTTATCCAT+AGG + chr2_1:27078565-27078584 Msa0203310:intron 30.0%
! ATTCACATATCACTAGTTTG+AGG + chr2_1:27078764-27078783 Msa0203310:intron 30.0%
!!! CATTCAAACCTTGTCATTTT+AGG - chr2_1:27078836-27078855 None:intergenic 30.0%
!!! CAGTTTTCAATTTTGGTTTG+TGG + chr2_1:27079289-27079308 Msa0203310:intron 30.0%
TCCAAATTATAGACTGCAAA+GGG - chr2_1:27079375-27079394 None:intergenic 30.0%
!!! ATTGGCTTTTAAAATGAGTG+AGG - chr2_1:27079517-27079536 None:intergenic 30.0%
! GTTTAGAATTCTTAGACTGT+GGG - chr2_1:27079566-27079585 None:intergenic 30.0%
! AGTTTAGAATTCTTAGACTG+TGG - chr2_1:27079567-27079586 None:intergenic 30.0%
AGAATTCTAAACTGAATTGG+GGG + chr2_1:27079574-27079593 Msa0203310:intron 30.0%
!!! TCGTTTTTTCGGAAGAAAAA+TGG + chr2_1:27079735-27079754 Msa0203310:intron 30.0%
!! CTGCTTTTGTTTCTTATTGA+TGG + chr2_1:27079872-27079891 Msa0203310:intron 30.0%
! ATTCATTTTCTTCGCATTTC+AGG + chr2_1:27079991-27080010 Msa0203310:intron 30.0%
!! GGAAGTTTTAGTCAAAATCA+AGG - chr2_1:27080078-27080097 None:intergenic 30.0%
AGCTTGATTATTAAGATGGT+AGG - chr2_1:27080099-27080118 None:intergenic 30.0%
TACCATCTTAATAATCAAGC+TGG + chr2_1:27080098-27080117 Msa0203310:three_prime_UTR 30.0%
CTGCATTAAAATTTGCAGAT+AGG - chr2_1:27080128-27080147 None:intergenic 30.0%
AATACTACACAGCTAGTAAT+TGG + chr2_1:27080246-27080265 Msa0203310:three_prime_UTR 30.0%
! TTTTGTACCATAGGTCAATA+TGG + chr2_1:27080273-27080292 Msa0203310:three_prime_UTR 30.0%
TCAATTTCCATATTGACCTA+TGG - chr2_1:27080283-27080302 None:intergenic 30.0%
GTTTCCAATCCAAACTAAAC+TGG + chr2_1:27074223-27074242 Msa0203310:five_prime_UTR 35.0%
!! TTCACCAGTTTAGTTTGGAT+TGG - chr2_1:27074230-27074249 None:intergenic 35.0%
GGAAAAGGAGAAAGAACAAA+AGG - chr2_1:27074438-27074457 None:intergenic 35.0%
!!! TTGTGGGTTGTCTTTGTTTT+TGG + chr2_1:27074470-27074489 Msa0203310:intron 35.0%
! AAGAATTGGCTCAATGTCTT+GGG + chr2_1:27074686-27074705 Msa0203310:exon 35.0%
GTAGAGAGTAAAAGTTCATC+AGG - chr2_1:27074717-27074736 None:intergenic 35.0%
! ACGTCTTTGATTAGAAGTGT+CGG + chr2_1:27074933-27074952 Msa0203310:intron 35.0%
AGTTCAGTTCATTCAATCAC+TGG - chr2_1:27075364-27075383 None:intergenic 35.0%
TTGGAGCGAATAATGAGATA+TGG + chr2_1:27075585-27075604 Msa0203310:intron 35.0%
TTACGCTCATTTGATCAGTT+TGG + chr2_1:27075700-27075719 Msa0203310:CDS 35.0%
ACTTGCATTCTTCTTTGTGA+AGG + chr2_1:27075737-27075756 Msa0203310:intron 35.0%
! ACAGCTAATGTTGTTCTAGA+AGG + chr2_1:27075826-27075845 Msa0203310:intron 35.0%
CTTTATTGTGATGTCCCTTT+AGG + chr2_1:27075877-27075896 Msa0203310:CDS 35.0%
CGAATTACATAAAGGCCTAA+AGG - chr2_1:27075895-27075914 None:intergenic 35.0%
TTAGGCCTTTATGTAATTCG+TGG + chr2_1:27075895-27075914 Msa0203310:CDS 35.0%
TAGGCCTTTATGTAATTCGT+GGG + chr2_1:27075896-27075915 Msa0203310:CDS 35.0%
TTTCCCCACGAATTACATAA+AGG - chr2_1:27075903-27075922 None:intergenic 35.0%
GGGGAAAATGTTGTCTTAAT+TGG + chr2_1:27075916-27075935 Msa0203310:CDS 35.0%
TAATTGATCTTGGCCATTGT+TGG - chr2_1:27076339-27076358 None:intergenic 35.0%
TTTCTTAAATGCAGGGAATC+TGG + chr2_1:27076366-27076385 Msa0203310:intron 35.0%
GTCAATAAGCCTGTTAAAAC+TGG - chr2_1:27076430-27076449 None:intergenic 35.0%
TTCGTCTCAATCCTATTCTT+AGG + chr2_1:27076568-27076587 Msa0203310:intron 35.0%
CTCAATCCTATTCTTAGGAT+TGG + chr2_1:27076573-27076592 Msa0203310:intron 35.0%
CTTTCAGTCATTGAGAGATA+TGG + chr2_1:27076608-27076627 Msa0203310:intron 35.0%
GCTAAATGATATCAGACCAT+AGG + chr2_1:27076718-27076737 Msa0203310:intron 35.0%
TAGATAGTTCATGAGAGAAC+TGG - chr2_1:27076858-27076877 None:intergenic 35.0%
CTCATGAACTATCTATCAAC+TGG + chr2_1:27076863-27076882 Msa0203310:intron 35.0%
! TCATGTAATTACTGCCACTT+TGG + chr2_1:27077016-27077035 Msa0203310:intron 35.0%
TAGTTCAAAATGAGCCAAAG+TGG - chr2_1:27077033-27077052 None:intergenic 35.0%
CCGTTTCAATTGTTCTCTAA+AGG + chr2_1:27077176-27077195 Msa0203310:intron 35.0%
! TTCTCTAAAGGATTCTCAGT+AGG + chr2_1:27077188-27077207 Msa0203310:intron 35.0%
! CCAAGAATTTGAAATGTTGG+GGG + chr2_1:27077222-27077241 Msa0203310:intron 35.0%
CTTTCGTATTGTCGCTATAA+TGG - chr2_1:27077400-27077419 None:intergenic 35.0%
CATTATAGCGACAATACGAA+AGG + chr2_1:27077398-27077417 Msa0203310:intron 35.0%
TTATAGCGACAATACGAAAG+GGG + chr2_1:27077400-27077419 Msa0203310:intron 35.0%
! TTACCATTTTCTGTCTGTAG+AGG + chr2_1:27077606-27077625 Msa0203310:intron 35.0%
ATTAATAAGAGCCATCTGGA+GGG - chr2_1:27077786-27077805 None:intergenic 35.0%
AGGACATTTATGGTTATGTG+TGG + chr2_1:27078162-27078181 Msa0203310:intron 35.0%
!! TCTGTTAGTTGGTAAAGGAT+TGG + chr2_1:27078241-27078260 Msa0203310:intron 35.0%
!! CTGTTAGTTGGTAAAGGATT+GGG + chr2_1:27078242-27078261 Msa0203310:intron 35.0%
ATGCAAGACTCGAATTTCTT+AGG + chr2_1:27078304-27078323 Msa0203310:intron 35.0%
GAACCTAGTCGTTACAAATA+TGG - chr2_1:27078427-27078446 None:intergenic 35.0%
!!! GATTAGTTTTGCAGTTTGCA+GGG - chr2_1:27078459-27078478 None:intergenic 35.0%
TACATTGGATGATGACTACA+GGG - chr2_1:27078481-27078500 None:intergenic 35.0%
ATACATTGGATGATGACTAC+AGG - chr2_1:27078482-27078501 None:intergenic 35.0%
!! TTAGCTTTGTTCCAATGGTA+CGG - chr2_1:27078549-27078568 None:intergenic 35.0%
!! GTCAACTTGCTTTTGATACT+TGG - chr2_1:27078688-27078707 None:intergenic 35.0%
!!! TTGTCATTTTAGGCATGTAC+AGG - chr2_1:27078826-27078845 None:intergenic 35.0%
TGTACATGCCTAAAATGACA+AGG + chr2_1:27078825-27078844 Msa0203310:intron 35.0%
TTTGAATCCATTTGCAAAGG+AGG + chr2_1:27078969-27078988 Msa0203310:intron 35.0%
TTCGTTTATGCTAAGAGCTT+TGG - chr2_1:27079022-27079041 None:intergenic 35.0%
!! CTGGATTTGTTCGTAGTTTT+TGG - chr2_1:27079053-27079072 None:intergenic 35.0%
TTATAGCAAGTTAGCAATGC+TGG - chr2_1:27079072-27079091 None:intergenic 35.0%
!!! AGTTTTAGCTCATTTGAGCT+GGG - chr2_1:27079096-27079115 None:intergenic 35.0%
!!! AAGTTTTAGCTCATTTGAGC+TGG - chr2_1:27079097-27079116 None:intergenic 35.0%
!! TGAGCTAAAACTTAGCTCTA+CGG + chr2_1:27079104-27079123 Msa0203310:intron 35.0%
TCAAAATTACTAGAGAGGGA+AGG - chr2_1:27079171-27079190 None:intergenic 35.0%
CTCAATAGGATGAACTTTGT+TGG + chr2_1:27079326-27079345 Msa0203310:intron 35.0%
AAATTATAGACTGCAAAGGG+TGG - chr2_1:27079372-27079391 None:intergenic 35.0%
ACCCTTTGCAGTCTATAATT+TGG + chr2_1:27079371-27079390 Msa0203310:intron 35.0%
GTCCAAATTATAGACTGCAA+AGG - chr2_1:27079376-27079395 None:intergenic 35.0%
GTGTCATATTGATGCAATGA+AGG - chr2_1:27079408-27079427 None:intergenic 35.0%
GCTCTATCTATAGACAATGT+GGG - chr2_1:27079465-27079484 None:intergenic 35.0%
ATGCCTTGTAAGTAATACGA+AGG - chr2_1:27079487-27079506 None:intergenic 35.0%
TATTACTTACAAGGCATGAG+TGG + chr2_1:27079490-27079509 Msa0203310:intron 35.0%
CTAACTCAATGCCAGAAAAT+TGG - chr2_1:27079535-27079554 None:intergenic 35.0%
!! TTTTTCGGAAGAAAAATGGC+TGG + chr2_1:27079739-27079758 Msa0203310:intron 35.0%
CACCAGCTTGATTATTAAGA+TGG - chr2_1:27080103-27080122 None:intergenic 35.0%
CATCTTAATAATCAAGCTGG+TGG + chr2_1:27080101-27080120 Msa0203310:three_prime_UTR 35.0%
ATTGTTATCCAACTTGAGTC+CGG - chr2_1:27080154-27080173 None:intergenic 35.0%
!! GACTCAAGTTGGATAACAAT+GGG + chr2_1:27080154-27080173 Msa0203310:three_prime_UTR 35.0%
GGTGGGAAGAATAAGTAATA+TGG + chr2_1:27080175-27080194 Msa0203310:three_prime_UTR 35.0%
ACCAAATTCACCGATCGAAA+AGG + chr2_1:27074369-27074388 Msa0203310:five_prime_UTR 40.0%
! ACCTTTTCGATCGGTGAATT+TGG - chr2_1:27074373-27074392 None:intergenic 40.0%
! GAAGAATTGGCTCAATGTCT+TGG + chr2_1:27074685-27074704 Msa0203310:exon 40.0%
!! GCGCATACCGGTTTATAAAA+TGG + chr2_1:27075226-27075245 Msa0203310:intron 40.0%
AGGCCTTTATGTAATTCGTG+GGG + chr2_1:27075897-27075916 Msa0203310:CDS 40.0%
TGTTGTCTTAATTGGAGAGC+TGG + chr2_1:27075924-27075943 Msa0203310:CDS 40.0%
! GATTTAGGACTTGGAAAAGG+AGG + chr2_1:27076035-27076054 Msa0203310:intron 40.0%
TCTGACACACATGTCATATG+TGG - chr2_1:27076069-27076088 None:intergenic 40.0%
ACATATGACATGTGTGTCAG+AGG + chr2_1:27076068-27076087 Msa0203310:CDS 40.0%
CAACCATGTGACGCATTTAT+TGG + chr2_1:27076238-27076257 Msa0203310:intron 40.0%
AGACCAATAAATGCGTCACA+TGG - chr2_1:27076244-27076263 None:intergenic 40.0%
! TGTGACGCATTTATTGGTCT+TGG + chr2_1:27076244-27076263 Msa0203310:intron 40.0%
! GGTTTAAAGTGAGCCAACAA+TGG + chr2_1:27076323-27076342 Msa0203310:intron 40.0%
AAAGGCTCACATATGTCCTA+TGG - chr2_1:27076737-27076756 None:intergenic 40.0%
! TTGAATTGGTCAGCTTTGTC+TGG + chr2_1:27076935-27076954 Msa0203310:intron 40.0%
GAAAGCTTCTAACACGTCAT+CGG - chr2_1:27076992-27077011 None:intergenic 40.0%
AGATAGATTTCCCCTACTCT+TGG + chr2_1:27077140-27077159 Msa0203310:intron 40.0%
CCCCCAACATTTCAAATTCT+TGG - chr2_1:27077225-27077244 None:intergenic 40.0%
TGAGGCTGTTTACTTAGGAT+GGG + chr2_1:27077373-27077392 Msa0203310:intron 40.0%
GAGTAAACCTTGCTGATGAT+GGG - chr2_1:27077426-27077445 None:intergenic 40.0%
AGGTTTACTCGAGGAAATGA+AGG + chr2_1:27077436-27077455 Msa0203310:intron 40.0%
GGTTTACTCGAGGAAATGAA+GGG + chr2_1:27077437-27077456 Msa0203310:intron 40.0%
AAGGGACTGATAATAGGTGT+TGG + chr2_1:27077528-27077547 Msa0203310:intron 40.0%
AGGGACTGATAATAGGTGTT+GGG + chr2_1:27077529-27077548 Msa0203310:intron 40.0%
CAGGAGAAAATATCTGACTC+TGG + chr2_1:27077582-27077601 Msa0203310:intron 40.0%
CCTAAGTATAAGAGTCCATG+TGG - chr2_1:27077712-27077731 None:intergenic 40.0%
CCACATGGACTCTTATACTT+AGG + chr2_1:27077709-27077728 Msa0203310:intron 40.0%
ATGGACTCTTATACTTAGGC+TGG + chr2_1:27077713-27077732 Msa0203310:intron 40.0%
GATTAATAAGAGCCATCTGG+AGG - chr2_1:27077787-27077806 None:intergenic 40.0%
GTCGATTAATAAGAGCCATC+TGG - chr2_1:27077790-27077809 None:intergenic 40.0%
TTCATCACTTGCACATGCTA+AGG - chr2_1:27077877-27077896 None:intergenic 40.0%
ATAGGGAAGTTATGGGACAA+GGG + chr2_1:27078207-27078226 Msa0203310:intron 40.0%
AAGTTATGGGACAAGGGAAA+GGG + chr2_1:27078213-27078232 Msa0203310:intron 40.0%
!! GGGATTCTGTTAGTTGGTAA+AGG + chr2_1:27078236-27078255 Msa0203310:intron 40.0%
!! TTAGTTGGTAAAGGATTGGG+TGG + chr2_1:27078245-27078264 Msa0203310:intron 40.0%
!! TAGTTGGTAAAGGATTGGGT+GGG + chr2_1:27078246-27078265 Msa0203310:intron 40.0%
TTCCCAAATGTTCGAGAGTT+GGG - chr2_1:27078277-27078296 None:intergenic 40.0%
AGTCGTTACAAATATGGGCA+GGG - chr2_1:27078421-27078440 None:intergenic 40.0%
TAGTCGTTACAAATATGGGC+AGG - chr2_1:27078422-27078441 None:intergenic 40.0%
TGCCCATATTTGTAACGACT+AGG + chr2_1:27078421-27078440 Msa0203310:intron 40.0%
!!! GGATTAGTTTTGCAGTTTGC+AGG - chr2_1:27078460-27078479 None:intergenic 40.0%
TCATGGTTGTCAAACTCTCT+AGG + chr2_1:27078618-27078637 Msa0203310:intron 40.0%
!! AGCTTTGGAACTGAGATTCA+AGG - chr2_1:27079007-27079026 None:intergenic 40.0%
CTCTTAGCATAAACGAAACC+AGG + chr2_1:27079025-27079044 Msa0203310:intron 40.0%
!!! TGTTCGTAGTTTTTGGTTCC+TGG - chr2_1:27079046-27079065 None:intergenic 40.0%
!!! TTCAATTTTGGTTTGTGGCC+TGG + chr2_1:27079294-27079313 Msa0203310:intron 40.0%
CCTATTGAGAACACAAAACC+AGG - chr2_1:27079315-27079334 None:intergenic 40.0%
!!! CCTGGTTTTGTGTTCTCAAT+AGG + chr2_1:27079312-27079331 Msa0203310:intron 40.0%
ATATGACACCTTTAGTGTGC+TGG + chr2_1:27079419-27079438 Msa0203310:intron 40.0%
TATGACACCTTTAGTGTGCT+GGG + chr2_1:27079420-27079439 Msa0203310:intron 40.0%
GGCTCTATCTATAGACAATG+TGG - chr2_1:27079466-27079485 None:intergenic 40.0%
GAGCCTTCGTATTACTTACA+AGG + chr2_1:27079481-27079500 Msa0203310:intron 40.0%
CTCCATGATTGTGACCAAAA+CGG + chr2_1:27079636-27079655 Msa0203310:intron 40.0%
!! AACCGTTTTGGTCACAATCA+TGG - chr2_1:27079641-27079660 None:intergenic 40.0%
ACCAAAACGGTTCATAGTTC+TGG + chr2_1:27079649-27079668 Msa0203310:intron 40.0%
! ACCAGAACTATGAACCGTTT+TGG - chr2_1:27079653-27079672 None:intergenic 40.0%
TGAAGGGAACTATGAGGAAA+AGG + chr2_1:27080044-27080063 Msa0203310:CDS 40.0%
!! GCAAATTTTAATGCAGCTGC+CGG + chr2_1:27080132-27080151 Msa0203310:three_prime_UTR 40.0%
!! GGACTCAAGTTGGATAACAA+TGG + chr2_1:27080153-27080172 Msa0203310:three_prime_UTR 40.0%
!! TCAAGTTGGATAACAATGGG+TGG + chr2_1:27080157-27080176 Msa0203310:three_prime_UTR 40.0%
! CAAGTTGGATAACAATGGGT+GGG + chr2_1:27080158-27080177 Msa0203310:three_prime_UTR 40.0%
ATAATCAGACGCAGTGAAAG+TGG + chr2_1:27080420-27080439 Msa0203310:three_prime_UTR 40.0%
GTGATGAGCTAAGCGACATA+GGG + chr2_1:27075146-27075165 Msa0203310:intron 45.0%
AGCTAAGCGACATAGGGATA+GGG + chr2_1:27075152-27075171 Msa0203310:intron 45.0%
TTGGTGGAGACTGCATGTAT+AGG + chr2_1:27075301-27075320 Msa0203310:intron 45.0%
TGGTGGAGACTGCATGTATA+GGG + chr2_1:27075302-27075321 Msa0203310:intron 45.0%
TTCTTGTCCTGTTGCGAGAT+GGG + chr2_1:27075659-27075678 Msa0203310:CDS 45.0%
! CGAGATGGGCGAAAACTTTT+GGG + chr2_1:27075673-27075692 Msa0203310:CDS 45.0%
GACACACATGTCATATGTGG+TGG - chr2_1:27076066-27076085 None:intergenic 45.0%
GTCAGAGGCTGACATAAGAA+AGG + chr2_1:27076083-27076102 Msa0203310:CDS 45.0%
GCTTATTGACAGCTGTCAGT+TGG + chr2_1:27076440-27076459 Msa0203310:intron 45.0%
ACACACTTCACCAAGAGTAG+GGG - chr2_1:27077153-27077172 None:intergenic 45.0%
GACACACTTCACCAAGAGTA+GGG - chr2_1:27077154-27077173 None:intergenic 45.0%
AGACACACTTCACCAAGAGT+AGG - chr2_1:27077155-27077174 None:intergenic 45.0%
CATTTCTGATAGGACACCTG+AGG + chr2_1:27077355-27077374 Msa0203310:intron 45.0%
ACACCTGAGGCTGTTTACTT+AGG + chr2_1:27077368-27077387 Msa0203310:intron 45.0%
CATCCTAAGTAAACAGCCTC+AGG - chr2_1:27077374-27077393 None:intergenic 45.0%
CTGAGGCTGTTTACTTAGGA+TGG + chr2_1:27077372-27077391 Msa0203310:intron 45.0%
CGAGTAAACCTTGCTGATGA+TGG - chr2_1:27077427-27077446 None:intergenic 45.0%
TCATCAGCAAGGTTTACTCG+AGG + chr2_1:27077427-27077446 Msa0203310:intron 45.0%
TTACTCGAGGAAATGAAGGG+TGG + chr2_1:27077440-27077459 Msa0203310:intron 45.0%
TACTCGAGGAAATGAAGGGT+GGG + chr2_1:27077441-27077460 Msa0203310:intron 45.0%
! GGGACTGATAATAGGTGTTG+GGG + chr2_1:27077530-27077549 Msa0203310:intron 45.0%
GAGCCTCTACAGACAGAAAA+TGG - chr2_1:27077612-27077631 None:intergenic 45.0%
! TGGAGGGAAGATTTTGCGAA+GGG - chr2_1:27077770-27077789 None:intergenic 45.0%
GAAGTTATGGGACAAGGGAA+AGG + chr2_1:27078212-27078231 Msa0203310:intron 45.0%
AGTTATGGGACAAGGGAAAG+GGG + chr2_1:27078214-27078233 Msa0203310:intron 45.0%
AAAGGGGGGATTCTGTTAGT+TGG + chr2_1:27078230-27078249 Msa0203310:intron 45.0%
AGACCCAACTCTCGAACATT+TGG + chr2_1:27078271-27078290 Msa0203310:intron 45.0%
GACCCAACTCTCGAACATTT+GGG + chr2_1:27078272-27078291 Msa0203310:intron 45.0%
CTTCCCAAATGTTCGAGAGT+TGG - chr2_1:27078278-27078297 None:intergenic 45.0%
CAACTCTCGAACATTTGGGA+AGG + chr2_1:27078276-27078295 Msa0203310:intron 45.0%
GTCGTTACAAATATGGGCAG+GGG - chr2_1:27078420-27078439 None:intergenic 45.0%
GTTAACTACGTCCGTACCAT+TGG + chr2_1:27078535-27078554 Msa0203310:intron 45.0%
! ATTTGTTGCGGCAAACCCTA+TGG - chr2_1:27078584-27078603 None:intergenic 45.0%
TAGGGTTTGCCGCAACAAAT+TGG + chr2_1:27078584-27078603 Msa0203310:intron 45.0%
CGCATATGCATATGCAGAGT+CGG - chr2_1:27078936-27078955 None:intergenic 45.0%
CCATTTGCAAAGGAGGTGAA+CGG + chr2_1:27078976-27078995 Msa0203310:intron 45.0%
AGAGGGAAGGATAGTGTGAT+TGG - chr2_1:27079158-27079177 None:intergenic 45.0%
TGGATAGTCCCCCATAATTG+TGG + chr2_1:27079346-27079365 Msa0203310:intron 45.0%
AAAGGGTGGCCACAATTATG+GGG - chr2_1:27079358-27079377 None:intergenic 45.0%
CAAAGGGTGGCCACAATTAT+GGG - chr2_1:27079359-27079378 None:intergenic 45.0%
ACCTTTAGTGTGCTGGGTTT+AGG + chr2_1:27079426-27079445 Msa0203310:intron 45.0%
CCTTTAGTGTGCTGGGTTTA+GGG + chr2_1:27079427-27079446 Msa0203310:intron 45.0%
CTTTAGTGTGCTGGGTTTAG+GGG + chr2_1:27079428-27079447 Msa0203310:intron 45.0%
TTTAGTGTGCTGGGTTTAGG+GGG + chr2_1:27079429-27079448 Msa0203310:intron 45.0%
TAGGGAAAGCCGACATTTCT+AGG - chr2_1:27079799-27079818 None:intergenic 45.0%
GAGGAACTGTCGATCATGTA+GGG - chr2_1:27079817-27079836 None:intergenic 45.0%
TGAGGAACTGTCGATCATGT+AGG - chr2_1:27079818-27079837 None:intergenic 45.0%
GTGATCTGAAGGGAACTATG+AGG + chr2_1:27080038-27080057 Msa0203310:CDS 45.0%
GGGAACTATGAGGAAAAGGA+TGG + chr2_1:27080048-27080067 Msa0203310:CDS 45.0%
!!! ATTAATATTAATTTGTATTT+TGG + chr2_1:27078340-27078359 Msa0203310:intron 5.0%
! CACATGTGTCGGTGTGATGT+CGG + chr2_1:27074882-27074901 Msa0203310:intron 50.0%
TCGGTGACATTGGCACATGT+CGG + chr2_1:27074901-27074920 Msa0203310:intron 50.0%
ACATTGGCACATGTCGGACA+CGG + chr2_1:27074907-27074926 Msa0203310:intron 50.0%
GGTGATGAGCTAAGCGACAT+AGG + chr2_1:27075145-27075164 Msa0203310:intron 50.0%
GAGCTAAGCGACATAGGGAT+AGG + chr2_1:27075151-27075170 Msa0203310:intron 50.0%
CGGTATGCGCTCACTGATAA+GGG - chr2_1:27075216-27075235 None:intergenic 50.0%
CCTTATCAGTGAGCGCATAC+CGG + chr2_1:27075214-27075233 Msa0203310:intron 50.0%
TGGAGACTGCATGTATAGGG+TGG + chr2_1:27075305-27075324 Msa0203310:intron 50.0%
CTTCTTGTCCTGTTGCGAGA+TGG + chr2_1:27075658-27075677 Msa0203310:CDS 50.0%
! GCGAGATGGGCGAAAACTTT+TGG + chr2_1:27075672-27075691 Msa0203310:CDS 50.0%
GCGTGTGAACGAGTGATTGT+TGG + chr2_1:27075850-27075869 Msa0203310:CDS 50.0%
ACTCGAGGAAATGAAGGGTG+GGG + chr2_1:27077442-27077461 Msa0203310:intron 50.0%
!!! GATTTTGCGAAGGGCACTGA+TGG - chr2_1:27077761-27077780 None:intergenic 50.0%
! CTGGAGGGAAGATTTTGCGA+AGG - chr2_1:27077771-27077790 None:intergenic 50.0%
CGCAAAATCTTCCCTCCAGA+TGG + chr2_1:27077772-27077791 Msa0203310:intron 50.0%
GTTATGGGACAAGGGAAAGG+GGG + chr2_1:27078215-27078234 Msa0203310:intron 50.0%
TTATGGGACAAGGGAAAGGG+GGG + chr2_1:27078216-27078235 Msa0203310:intron 50.0%
GTTACAAATATGGGCAGGGG+TGG - chr2_1:27078417-27078436 None:intergenic 50.0%
CCGTTCACCTCCTTTGCAAA+TGG - chr2_1:27078979-27078998 None:intergenic 50.0%
AGCTAACTCCAGCTCCAACA+AGG + chr2_1:27079127-27079146 Msa0203310:intron 50.0%
GCTAACTCCAGCTCCAACAA+GGG + chr2_1:27079128-27079147 Msa0203310:intron 50.0%
CTAACTCCAGCTCCAACAAG+GGG + chr2_1:27079129-27079148 Msa0203310:intron 50.0%
TAACTCCAGCTCCAACAAGG+GGG + chr2_1:27079130-27079149 Msa0203310:intron 50.0%
AAGGGTGGCCACAATTATGG+GGG - chr2_1:27079357-27079376 None:intergenic 50.0%
GCAAAGGGTGGCCACAATTA+TGG - chr2_1:27079360-27079379 None:intergenic 50.0%
CCCTAAACCCAGCACACTAA+AGG - chr2_1:27079430-27079449 None:intergenic 50.0%
ACGCGATGCTAGTGATCTGA+AGG + chr2_1:27080027-27080046 Msa0203310:CDS 50.0%
CGCGATGCTAGTGATCTGAA+GGG + chr2_1:27080028-27080047 Msa0203310:CDS 50.0%
CGGTGTGATGTCGGTGACAT+TGG + chr2_1:27074891-27074910 Msa0203310:intron 55.0%
CATTGGCACATGTCGGACAC+GGG + chr2_1:27074908-27074927 Msa0203310:intron 55.0%
CCGGTATGCGCTCACTGATA+AGG - chr2_1:27075217-27075236 None:intergenic 55.0%
! GTTTTCGCCCATCTCGCAAC+AGG - chr2_1:27075669-27075688 None:intergenic 55.0%
AAAGGGGCCCATCATCAGCA+AGG + chr2_1:27077416-27077435 Msa0203310:intron 55.0%
TATGGGCAGGGGTGGTGTTT+GGG - chr2_1:27078409-27078428 None:intergenic 55.0%
ATATGGGCAGGGGTGGTGTT+TGG - chr2_1:27078410-27078429 None:intergenic 55.0%
!! GAGTCGGTGTTGCAACTGTG+AGG - chr2_1:27078920-27078939 None:intergenic 55.0%
! TGTGATTGGCTCCCCCTTGT+TGG - chr2_1:27079144-27079163 None:intergenic 55.0%
GGGGTGGTGTTTGGGAAGAG+AGG - chr2_1:27078401-27078420 None:intergenic 60.0%
GTGTGCTGGGTTTAGGGGGT+AGG + chr2_1:27079433-27079452 Msa0203310:intron 60.0%
TGCAGCTGCCGGACTCAAGT+TGG + chr2_1:27080143-27080162 Msa0203310:three_prime_UTR 60.0%
TGGCTCCCCCTTGTTGGAGC+TGG - chr2_1:27079138-27079157 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 27074207 27080500 27074207 ID=Msa0203310;Name=Msa0203310
chr2_1 mRNA 27074207 27080500 27074207 ID=Msa0203310-mRNA-1;Parent=Msa0203310;Name=Msa0203310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=206|1|1|1|0.6|0.83|6|410|128
chr2_1 exon 27074207 27074390 27074207 ID=Msa0203310-mRNA-1:exon:10019;Parent=Msa0203310-mRNA-1
chr2_1 exon 27074677 27074759 27074677 ID=Msa0203310-mRNA-1:exon:10020;Parent=Msa0203310-mRNA-1
chr2_1 exon 27075653 27075721 27075653 ID=Msa0203310-mRNA-1:exon:10021;Parent=Msa0203310-mRNA-1
chr2_1 exon 27075830 27075945 27075830 ID=Msa0203310-mRNA-1:exon:10022;Parent=Msa0203310-mRNA-1
chr2_1 exon 27076042 27076104 27076042 ID=Msa0203310-mRNA-1:exon:10023;Parent=Msa0203310-mRNA-1
chr2_1 exon 27080013 27080500 27080013 ID=Msa0203310-mRNA-1:exon:10024;Parent=Msa0203310-mRNA-1
chr2_1 five_prime_UTR 27074207 27074390 27074207 ID=Msa0203310-mRNA-1:five_prime_utr;Parent=Msa0203310-mRNA-1
chr2_1 five_prime_UTR 27074677 27074698 27074677 ID=Msa0203310-mRNA-1:five_prime_utr;Parent=Msa0203310-mRNA-1
chr2_1 CDS 27074699 27074759 27074699 ID=Msa0203310-mRNA-1:cds;Parent=Msa0203310-mRNA-1
chr2_1 CDS 27075653 27075721 27075653 ID=Msa0203310-mRNA-1:cds;Parent=Msa0203310-mRNA-1
chr2_1 CDS 27075830 27075945 27075830 ID=Msa0203310-mRNA-1:cds;Parent=Msa0203310-mRNA-1
chr2_1 CDS 27076042 27076104 27076042 ID=Msa0203310-mRNA-1:cds;Parent=Msa0203310-mRNA-1
chr2_1 CDS 27080013 27080090 27080013 ID=Msa0203310-mRNA-1:cds;Parent=Msa0203310-mRNA-1
chr2_1 three_prime_UTR 27080091 27080500 27080091 ID=Msa0203310-mRNA-1:three_prime_utr;Parent=Msa0203310-mRNA-1
Gene Sequence

>Msa0203310

ATGTCTTGGGCTGCACCTGATGAACTTTTACTCTCTACTTCTCTTGCTACATATCTTGACAAAAAACTTCTTGTCCTGTTGCGAGATGGGCGAAAACTTTTGGGTTTATTACGCTCATTTGATCAGTTTGCTAATGTTGTTCTAGAAGGTGCGTGTGAACGAGTGATTGTTGGTGATCTTTATTGTGATGTCCCTTTAGGCCTTTATGTAATTCGTGGGGAAAATGTTGTCTTAATTGGAGAGCTGGACTTGGAAAAGGAGGAGCTTCCACCACATATGACATGTGTGTCAGAGGCTGACATAAGAAAGGCTCAAAAAGCAGAACGCGATGCTAGTGATCTGAAGGGAACTATGAGGAAAAGGATGGAATTCCTTGATTTTGACTAA

Protein sequence

>Msa0203310

MSWAAPDELLLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDLYCDVPLGLYVIRGENVVLIGELDLEKEELPPHMTCVSEADIRKAQKAERDASDLKGTMRKRMEFLDFD*