Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271960 | XP_003593323.1 | 98.708 | 387 | 5 | 0 | 19 | 405 | 1 | 387 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271960 | sp|Q9T075|RMD5_ARATH | 49.871 | 387 | 189 | 5 | 23 | 405 | 3 | 388 | 6.58e-139 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271960 | G7IF96 | 98.708 | 387 | 5 | 0 | 19 | 405 | 1 | 387 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0271960 | 0.818521 | 1.876971e-52 | -8.615850e-47 |
| Msa0013050 | Msa0271960 | 0.880729 | 4.316593e-70 | -8.615850e-47 |
| Msa0017510 | Msa0271960 | -0.811352 | 7.308332e-51 | -8.615850e-47 |
| Msa0024210 | Msa0271960 | 0.800409 | 1.461067e-48 | -8.615850e-47 |
| Msa0029540 | Msa0271960 | 0.801573 | 8.449962e-49 | -8.615850e-47 |
| Msa0038350 | Msa0271960 | 0.803221 | 3.865709e-49 | -8.615850e-47 |
| Msa0054730 | Msa0271960 | 0.811061 | 8.450390e-51 | -8.615850e-47 |
| Msa0063350 | Msa0271960 | 0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0067990 | Msa0271960 | -0.800151 | 1.648800e-48 | -8.615850e-47 |
| Msa0074950 | Msa0271960 | 0.836201 | 1.074847e-56 | -8.615850e-47 |
| Msa0106370 | Msa0271960 | 0.827049 | 1.938963e-54 | -8.615850e-47 |
| Msa0124570 | Msa0271960 | 0.842024 | 3.328724e-58 | -8.615850e-47 |
| Msa0129790 | Msa0271960 | 0.811409 | 7.103477e-51 | -8.615850e-47 |
| Msa0148120 | Msa0271960 | -0.814674 | 1.366278e-51 | -8.615850e-47 |
| Msa0156650 | Msa0271960 | 0.835710 | 1.431986e-56 | -8.615850e-47 |
| Msa0157290 | Msa0271960 | -0.811483 | 6.845248e-51 | -8.615850e-47 |
| Msa0160550 | Msa0271960 | -0.825399 | 4.788741e-54 | -8.615850e-47 |
| Msa0162770 | Msa0271960 | 0.822944 | 1.806025e-53 | -8.615850e-47 |
| Msa0168640 | Msa0271960 | 0.804234 | 2.382465e-49 | -8.615850e-47 |
| Msa0169140 | Msa0271960 | 0.842437 | 2.587571e-58 | -8.615850e-47 |
| Msa0185640 | Msa0271960 | 0.805280 | 1.440350e-49 | -8.615850e-47 |
| Msa0200950 | Msa0271960 | 0.816155 | 6.399077e-52 | -8.615850e-47 |
| Msa0203310 | Msa0271960 | -0.804840 | 1.780378e-49 | -8.615850e-47 |
| Msa0215320 | Msa0271960 | 0.825524 | 4.473575e-54 | -8.615850e-47 |
| Msa0223410 | Msa0271960 | 0.828850 | 7.148466e-55 | -8.615850e-47 |
| Msa0229490 | Msa0271960 | 0.801452 | 8.946154e-49 | -8.615850e-47 |
| Msa0258670 | Msa0271960 | 0.817433 | 3.306319e-52 | -8.615850e-47 |
| Msa0260950 | Msa0271960 | 0.818550 | 1.848798e-52 | -8.615850e-47 |
| Msa0271960 | Msa0272480 | 0.850627 | 1.502480e-60 | -8.615850e-47 |
| Msa0271960 | Msa0279790 | -0.814134 | 1.798199e-51 | -8.615850e-47 |
| Msa0271960 | Msa0294560 | 0.826599 | 2.482992e-54 | -8.615850e-47 |
| Msa0271960 | Msa0302580 | 0.807961 | 3.914563e-50 | -8.615850e-47 |
| Msa0271960 | Msa0306210 | 0.816478 | 5.416486e-52 | -8.615850e-47 |
| Msa0271960 | Msa0312690 | 0.848616 | 5.472284e-60 | -8.615850e-47 |
| Msa0271960 | Msa0318250 | -0.802700 | 4.954981e-49 | -8.615850e-47 |
| Msa0271960 | Msa0326670 | -0.808225 | 3.438481e-50 | -8.615850e-47 |
| Msa0271960 | Msa0333030 | -0.815267 | 1.008965e-51 | -8.615850e-47 |
| Msa0271960 | Msa0333720 | 0.803437 | 3.488386e-49 | -8.615850e-47 |
| Msa0271960 | Msa0336420 | -0.816890 | 4.378581e-52 | -8.615850e-47 |
| Msa0271960 | Msa0340450 | -0.819873 | 9.238264e-53 | -8.615850e-47 |
| Msa0271960 | Msa0344830 | -0.800353 | 1.499628e-48 | -8.615850e-47 |
| Msa0271960 | Msa0358170 | -0.806017 | 1.008814e-49 | -8.615850e-47 |
| Msa0271960 | Msa0373930 | -0.804261 | 2.351026e-49 | -8.615850e-47 |
| Msa0271960 | Msa0414950 | 0.833947 | 3.979477e-56 | -8.615850e-47 |
| Msa0271960 | Msa0421780 | 0.851703 | 7.468265e-61 | -8.615850e-47 |
| Msa0271960 | Msa0436280 | 0.824850 | 6.455601e-54 | -8.615850e-47 |
| Msa0271960 | Msa0459770 | 0.834528 | 2.846020e-56 | -8.615850e-47 |
| Msa0271960 | Msa0465670 | 0.800492 | 1.405192e-48 | -8.615850e-47 |
| Msa0271960 | Msa0466390 | -0.821030 | 5.014309e-53 | -8.615850e-47 |
| Msa0271960 | Msa0467900 | 0.838274 | 3.169007e-57 | -8.615850e-47 |
| Msa0271960 | Msa0467960 | 0.832570 | 8.765310e-56 | -8.615850e-47 |
| Msa0271960 | Msa0524890 | 0.800918 | 1.150494e-48 | -8.615850e-47 |
| Msa0271960 | Msa0532100 | 0.800091 | 1.695336e-48 | -8.615850e-47 |
| Msa0271960 | Msa0547320 | -0.827034 | 1.955172e-54 | -8.615850e-47 |
| Msa0271960 | Msa0553220 | 0.844967 | 5.444477e-59 | -8.615850e-47 |
| Msa0271960 | Msa0558690 | -0.810795 | 9.648337e-51 | -8.615850e-47 |
| Msa0271960 | Msa0574760 | 0.802229 | 6.195317e-49 | -8.615850e-47 |
| Msa0271960 | Msa0585000 | 0.861777 | 8.081883e-64 | -8.615850e-47 |
| Msa0271960 | Msa0592440 | -0.810049 | 1.398328e-50 | -8.615850e-47 |
| Msa0271960 | Msa0601850 | -0.803047 | 4.200576e-49 | -8.615850e-47 |
| Msa0271960 | Msa0605170 | -0.804489 | 2.107456e-49 | -8.615850e-47 |
| Msa0271960 | Msa0607340 | 0.828444 | 8.958480e-55 | -8.615850e-47 |
| Msa0271960 | Msa0610430 | -0.813292 | 2.755100e-51 | -8.615850e-47 |
| Msa0271960 | Msa0626090 | -0.800268 | 1.560951e-48 | -8.615850e-47 |
| Msa0271960 | Msa0647450 | 0.833340 | 5.642159e-56 | -8.615850e-47 |
| Msa0271960 | Msa0661190 | 0.859213 | 4.832352e-63 | -8.615850e-47 |
| Msa0271960 | Msa0662650 | -0.806001 | 1.016846e-49 | -8.615850e-47 |
| Msa0271960 | Msa0708860 | -0.804686 | 1.917652e-49 | -8.615850e-47 |
| Msa0271960 | Msa0743720 | -0.810436 | 1.153821e-50 | -8.615850e-47 |
| Msa0271960 | Msa0754720 | 0.812186 | 4.812091e-51 | -8.615850e-47 |
| Msa0271960 | Msa0756630 | 0.836948 | 6.936021e-57 | -8.615850e-47 |
| Msa0271960 | Msa0757450 | 0.807660 | 4.535976e-50 | -8.615850e-47 |
| Msa0271960 | Msa0757500 | 0.820924 | 5.303530e-53 | -8.615850e-47 |
| Msa0271960 | Msa0764130 | 0.801177 | 1.018235e-48 | -8.615850e-47 |
| Msa0271960 | Msa0802470 | 0.802590 | 5.219095e-49 | -8.615850e-47 |
| Msa0271960 | Msa0808270 | -0.801041 | 1.085555e-48 | -8.615850e-47 |
| Msa0271960 | Msa0842210 | -0.810048 | 1.398678e-50 | -8.615850e-47 |
| Msa0271960 | Msa0843780 | 0.810564 | 1.082738e-50 | -8.615850e-47 |
| Msa0271960 | Msa0867050 | 0.817718 | 2.852239e-52 | -8.615850e-47 |
| Msa0271960 | Msa0880140 | -0.808899 | 2.469187e-50 | -8.615850e-47 |
| Msa0271960 | Msa0930460 | 0.821750 | 3.419352e-53 | -8.615850e-47 |
| Msa0271960 | Msa0942560 | 0.801885 | 7.290481e-49 | -8.615850e-47 |
| Msa0271960 | Msa0947660 | -0.801767 | 7.709238e-49 | -8.615850e-47 |
| Msa0271960 | Msa0968680 | -0.810864 | 9.324934e-51 | -8.615850e-47 |
| Msa0271960 | Msa0981820 | 0.842355 | 2.720159e-58 | -8.615850e-47 |
| Msa0271960 | Msa0993290 | -0.830806 | 2.387154e-55 | -8.615850e-47 |
| Msa0271960 | Msa0993600 | -0.825951 | 3.541611e-54 | -8.615850e-47 |
| Msa0271960 | Msa1004900 | 0.837888 | 3.984931e-57 | -8.615850e-47 |
| Msa0271960 | Msa1007610 | 0.844035 | 9.698449e-59 | -8.615850e-47 |
| Msa0271960 | Msa1014540 | -0.801091 | 1.060350e-48 | -8.615850e-47 |
| Msa0271960 | Msa1072460 | 0.821326 | 4.285412e-53 | -8.615850e-47 |
| Msa0271960 | Msa1075220 | 0.837282 | 5.698839e-57 | -8.615850e-47 |
| Msa0271960 | Msa1116130 | 0.840068 | 1.086315e-57 | -8.615850e-47 |
| Msa0271960 | Msa1121450 | 0.805267 | 1.450006e-49 | -8.615850e-47 |
| Msa0271960 | Msa1130270 | 0.818122 | 2.311343e-52 | -8.615850e-47 |
| Msa0271960 | Msa1139000 | 0.811930 | 5.471024e-51 | -8.615850e-47 |
| Msa0271960 | Msa1143930 | 0.834098 | 3.647398e-56 | -8.615850e-47 |
| Msa0271960 | Msa1162550 | 0.822881 | 1.868087e-53 | -8.615850e-47 |
| Msa0271960 | Msa1171870 | -0.806310 | 8.754131e-50 | -8.615850e-47 |
| Msa0271960 | Msa1186950 | 0.844009 | 9.858119e-59 | -8.615850e-47 |
| Msa0271960 | Msa1201430 | 0.818930 | 1.515437e-52 | -8.615850e-47 |
| Msa0271960 | Msa1204980 | 0.804439 | 2.159041e-49 | -8.615850e-47 |
| Msa0271960 | Msa1205010 | 0.813527 | 2.446403e-51 | -8.615850e-47 |
| Msa0271960 | Msa1217430 | 0.830232 | 3.298563e-55 | -8.615850e-47 |
| Msa0271960 | Msa1228210 | -0.800047 | 1.730921e-48 | -8.615850e-47 |
| Msa0271960 | Msa1253930 | 0.800409 | 1.461067e-48 | -8.615850e-47 |
| Msa0271960 | Msa1256540 | 0.801700 | 7.957266e-49 | -8.615850e-47 |
| Msa0271960 | Msa1259490 | 0.828195 | 1.028918e-54 | -8.615850e-47 |
| Msa0271960 | Msa1264020 | -0.802996 | 4.302817e-49 | -8.615850e-47 |
| Msa0271960 | Msa1269580 | 0.824430 | 8.104653e-54 | -8.615850e-47 |
| Msa0271960 | Msa1271210 | -0.805350 | 1.393029e-49 | -8.615850e-47 |
| Msa0271960 | Msa1282580 | 0.814561 | 1.446806e-51 | -8.615850e-47 |
| Msa0271960 | Msa1294610 | 0.810748 | 9.880344e-51 | -8.615850e-47 |
| Msa0271960 | Msa1296960 | 0.804322 | 2.283848e-49 | -8.615850e-47 |
| Msa0271960 | Msa1299180 | 0.824682 | 7.070139e-54 | -8.615850e-47 |
| Msa0271960 | Msa1302190 | 0.829257 | 5.696756e-55 | -8.615850e-47 |
| Msa0271960 | Msa1306430 | -0.806872 | 6.660535e-50 | -8.615850e-47 |
| Msa0271960 | Msa1307660 | 0.811196 | 7.900633e-51 | -8.615850e-47 |
| Msa0271960 | Msa1322190 | -0.805428 | 1.341252e-49 | -8.615850e-47 |
| Msa0271960 | Msa1327050 | -0.800070 | 1.712352e-48 | -8.615850e-47 |
| Msa0271960 | Msa1332040 | 0.809384 | 1.943611e-50 | -8.615850e-47 |
| Msa0271960 | Msa1335860 | -0.817939 | 2.541813e-52 | -8.615850e-47 |
| Msa0271960 | Msa1362880 | -0.814187 | 1.750869e-51 | -8.615850e-47 |
| Msa0271960 | Msa1376090 | 0.801537 | 8.591806e-49 | -8.615850e-47 |
| Msa0271960 | Msa1395230 | 0.826119 | 3.230430e-54 | -8.615850e-47 |
| Msa0271960 | Msa1410100 | -0.808332 | 3.262084e-50 | -8.615850e-47 |
| Msa0271960 | Msa1410430 | 0.815628 | 8.386249e-52 | -8.615850e-47 |
| Msa0271960 | Msa1416150 | -0.801348 | 9.395854e-49 | -8.615850e-47 |
| Msa0271960 | Msa1429360 | 0.826361 | 2.829513e-54 | -8.615850e-47 |
| Msa0271960 | Msa1445610 | 0.840752 | 7.196810e-58 | -8.615850e-47 |
| Msa0271960 | Msa1449250 | 0.817792 | 2.744214e-52 | -8.615850e-47 |
| Msa0271960 | Msa1451620 | 0.804239 | 2.376718e-49 | -8.615850e-47 |
| Msa0271960 | Msa1453780 | 0.819668 | 1.028967e-52 | -8.615850e-47 |
| Msa0271960 | Msa1454910 | 0.806080 | 9.783822e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271960 | MtrunA17_Chr2g0279981 | 98.708 | 387 | 5 | 0 | 19 | 405 | 1 | 387 | 0.0 | 798 |
| Msa0271960 | MtrunA17_Chr8g0366851 | 55.325 | 385 | 166 | 4 | 23 | 405 | 3 | 383 | 3.66e-159 | 453 |
| Msa0271960 | MtrunA17_Chr1g0213201 | 25.095 | 263 | 193 | 3 | 128 | 389 | 139 | 398 | 1.84e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271960 | AT4G37880.1 | 49.871 | 387 | 189 | 5 | 23 | 405 | 3 | 388 | 6.69e-140 | 404 |
| Msa0271960 | AT2G22690.1 | 47.409 | 386 | 193 | 3 | 23 | 405 | 3 | 381 | 5.69e-136 | 394 |
| Msa0271960 | AT2G22690.2 | 47.409 | 386 | 193 | 3 | 23 | 405 | 3 | 381 | 5.69e-136 | 394 |
| Msa0271960 | AT5G09630.1 | 48.691 | 382 | 192 | 3 | 25 | 405 | 8 | 386 | 1.23e-132 | 386 |
| Msa0271960 | AT3G55070.1 | 24.719 | 267 | 194 | 4 | 127 | 389 | 138 | 401 | 1.30e-24 | 105 |
| Msa0271960 | AT3G55070.2 | 24.194 | 186 | 137 | 2 | 127 | 309 | 138 | 322 | 3.76e-16 | 79.3 |
Find 97 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATAACATTTATAGCTTTC+TGG | 0.169037 | 2_3:+3463681 | Msa0271960:three_prime_UTR |
| GTTCTGTAAGAATTGATTTC+TGG | 0.173462 | 2_3:-3462642 | None:intergenic |
| GGATGAGTTCCACAAGCTTA+TGG | 0.237870 | 2_3:+3463152 | Msa0271960:CDS |
| GCGACAGTTCTGCTATCTTA+TGG | 0.286235 | 2_3:+3463266 | Msa0271960:CDS |
| AGTTGCTGTCCCCGGTTCAT+TGG | 0.298246 | 2_3:+3463220 | Msa0271960:CDS |
| ATACTTCATCAATGAAATAT+TGG | 0.304224 | 2_3:-3463662 | None:intergenic |
| CGTCAAGGTTTATTTGATCT+TGG | 0.307129 | 2_3:+3462853 | Msa0271960:CDS |
| CTGTATGCCTTTGAGATGTC+AGG | 0.320593 | 2_3:-3462775 | None:intergenic |
| AATGAAATATTGGTGAGATA+TGG | 0.332831 | 2_3:-3463652 | None:intergenic |
| GTTGCCAGTGCCTGTAGAAT+TGG | 0.333625 | 2_3:+3463410 | Msa0271960:CDS |
| AAGTCAAAGCTCAATGCTAT+TGG | 0.338042 | 2_3:+3462667 | Msa0271960:CDS |
| GGGTCGCTTCAACATTTAGA+AGG | 0.342573 | 2_3:+3462688 | Msa0271960:CDS |
| GATGAGTTCCACAAGCTTAT+GGG | 0.359926 | 2_3:+3463153 | Msa0271960:CDS |
| GTTCAAGATTAGAACCAATC+TGG | 0.379329 | 2_3:-3463023 | None:intergenic |
| TTCTGGTCAGCTAGAGTTAA+GGG | 0.382519 | 2_3:-3462625 | None:intergenic |
| GTAGCTTCCGCTGGACAATA+TGG | 0.384579 | 2_3:-3463588 | None:intergenic |
| TGTAATGGCGGCAAAGAAAC+AGG | 0.399530 | 2_3:+3463368 | Msa0271960:CDS |
| ATGAAATATTGGTGAGATAT+GGG | 0.409875 | 2_3:-3463651 | None:intergenic |
| TATGTAGAGGTTGTGCAAAA+TGG | 0.411920 | 2_3:+3463066 | Msa0271960:CDS |
| AGTCAAAGCTCAATGCTATT+GGG | 0.413606 | 2_3:+3462668 | Msa0271960:CDS |
| CGACAGTTCTGCTATCTTAT+GGG | 0.422087 | 2_3:+3463267 | Msa0271960:CDS |
| GTTGCTGTCCCCGGTTCATT+GGG | 0.436679 | 2_3:+3463221 | Msa0271960:CDS |
| TTTCTGGTCAGCTAGAGTTA+AGG | 0.443272 | 2_3:-3462626 | None:intergenic |
| AATTCCTTTCCCAATTCTAC+AGG | 0.445970 | 2_3:-3463420 | None:intergenic |
| CAAGATCAAATAAACCTTGA+CGG | 0.452848 | 2_3:-3462852 | None:intergenic |
| GGGGACAGCAACTCAGCATA+AGG | 0.458765 | 2_3:-3463210 | None:intergenic |
| TTGCCAGTGCCTGTAGAATT+GGG | 0.459787 | 2_3:+3463411 | Msa0271960:CDS |
| GTCAACAGTTTCTTGAGACT+TGG | 0.463673 | 2_3:-3462548 | None:intergenic |
| TGTAAACATGGCAGCAGCAT+TGG | 0.465517 | 2_3:-3463504 | None:intergenic |
| TTTCCCAATTCTACAGGCAC+TGG | 0.473290 | 2_3:-3463414 | None:intergenic |
| GGGACAGCAACTCAGCATAA+GGG | 0.480184 | 2_3:-3463209 | None:intergenic |
| GTTAAAGTTGGTAAATGTAA+TGG | 0.484174 | 2_3:+3463353 | Msa0271960:CDS |
| TTATGCTGAGTTGCTGTCCC+CGG | 0.488561 | 2_3:+3463212 | Msa0271960:CDS |
| GATAGCATCATAAATGAGGC+TGG | 0.489687 | 2_3:+3462877 | Msa0271960:CDS |
| ACATTTAGAAGGGCCGACTA+AGG | 0.495541 | 2_3:+3462699 | Msa0271960:CDS |
| ATCTTCAGCCTGCTCTCACA+TGG | 0.497516 | 2_3:+3462974 | Msa0271960:CDS |
| CTTGAGTTCAATTCCTTAGT+CGG | 0.502019 | 2_3:-3462712 | None:intergenic |
| GTATTTGCAGCTGGAATTGA+AGG | 0.511571 | 2_3:+3463318 | Msa0271960:CDS |
| ATAAACCTTGACGGTAAAAG+TGG | 0.512539 | 2_3:-3462843 | None:intergenic |
| GGCAAAGAAACAGGAGTGGC+AGG | 0.513247 | 2_3:+3463377 | Msa0271960:CDS |
| AAACATGGCAGCAGCATTGG+AGG | 0.513818 | 2_3:-3463501 | None:intergenic |
| TGTATGCCTTTGAGATGTCA+GGG | 0.517860 | 2_3:-3462774 | None:intergenic |
| GTTGTCATATCCCAATGAAC+CGG | 0.517993 | 2_3:-3463231 | None:intergenic |
| AAGAAACTGTTGACCAGGTA+GGG | 0.518696 | 2_3:+3462557 | Msa0271960:CDS |
| GCTCAATTTCACGCCCTACC+TGG | 0.525192 | 2_3:-3462570 | None:intergenic |
| CTGAAGATTTCTACCCCTCA+TGG | 0.525201 | 2_3:-3462959 | None:intergenic |
| GCAGAGACCCATGTGAGAGC+AGG | 0.525432 | 2_3:-3462982 | None:intergenic |
| TCCTTGTAAAGCTTGGCAAA+AGG | 0.525713 | 2_3:-3463132 | None:intergenic |
| TTTACCAACTTTAACAGTGT+GGG | 0.539825 | 2_3:-3463345 | None:intergenic |
| TATGGGTTGCCTCATGTATG+TGG | 0.539901 | 2_3:+3463170 | Msa0271960:CDS |
| CTGAATGTGGTATTTGCAGC+TGG | 0.541415 | 2_3:+3463309 | Msa0271960:CDS |
| TGTGCAACTGTAGCTTCCGC+TGG | 0.541609 | 2_3:-3463597 | None:intergenic |
| CCATGTTATTGAAGCCATGA+GGG | 0.541658 | 2_3:+3462945 | Msa0271960:CDS |
| TTGTCATATCCCAATGAACC+GGG | 0.544910 | 2_3:-3463230 | None:intergenic |
| GAACTCATCCTTGTAAAGCT+TGG | 0.548481 | 2_3:-3463139 | None:intergenic |
| TCATAATTGATTGCTTGCAA+AGG | 0.552758 | 2_3:-3463530 | None:intergenic |
| CCCTCATGGCTTCAATAACA+TGG | 0.553083 | 2_3:-3462945 | None:intergenic |
| GGCAACACTTCAGTCACCTC+AGG | 0.553737 | 2_3:+3462600 | Msa0271960:CDS |
| GTCTCAAGAAACTGTTGACC+AGG | 0.555169 | 2_3:+3462552 | Msa0271960:CDS |
| GTTGCCCACACTGTTAAAGT+TGG | 0.561687 | 2_3:+3463341 | Msa0271960:CDS |
| ATAGCATCATAAATGAGGCT+GGG | 0.563534 | 2_3:+3462878 | Msa0271960:CDS |
| GGTCGCTTCAACATTTAGAA+GGG | 0.564516 | 2_3:+3462689 | Msa0271960:CDS |
| CTACCTTGATCCCTACTCAC+CGG | 0.566675 | 2_3:-3463468 | None:intergenic |
| GGTAGGGCGTGAAATTGAGC+AGG | 0.570525 | 2_3:+3462573 | Msa0271960:CDS |
| TGCCCGGTGAGTAGGGATCA+AGG | 0.570813 | 2_3:+3463465 | Msa0271960:CDS |
| GCGTGAAATTGAGCAGGCAT+TGG | 0.570839 | 2_3:+3462579 | Msa0271960:CDS |
| CAAGAAACTGTTGACCAGGT+AGG | 0.574505 | 2_3:+3462556 | Msa0271960:CDS |
| TACCTTGATCCCTACTCACC+GGG | 0.580563 | 2_3:-3463467 | None:intergenic |
| TAGCATCATAAATGAGGCTG+GGG | 0.585377 | 2_3:+3462879 | Msa0271960:CDS |
| TGGAGATAGCATCATAAATG+AGG | 0.587360 | 2_3:+3462873 | Msa0271960:CDS |
| TTGTGATCTGAACATAAAGA+TGG | 0.589200 | 2_3:+3462459 | Msa0271960:CDS |
| CTCAAAGGCATACAGAAATG+TGG | 0.592635 | 2_3:+3462783 | Msa0271960:CDS |
| TCTTCAGCCTGCTCTCACAT+GGG | 0.592823 | 2_3:+3462975 | Msa0271960:CDS |
| CTACGAGAACCCACTGAATG+TGG | 0.597079 | 2_3:+3463296 | Msa0271960:CDS |
| GGACAGCAACTCAGCATAAG+GGG | 0.601482 | 2_3:-3463208 | None:intergenic |
| ATGGGTTGCCTCATGTATGT+GGG | 0.609430 | 2_3:+3463171 | Msa0271960:CDS |
| ATTTACCAACTTTAACAGTG+TGG | 0.610827 | 2_3:-3463346 | None:intergenic |
| GCTGCAAATACCACATTCAG+TGG | 0.614733 | 2_3:-3463306 | None:intergenic |
| TGAGGCAACCCATAAGCTTG+TGG | 0.617009 | 2_3:-3463161 | None:intergenic |
| GTTAAACCCTGACATCTCAA+AGG | 0.619970 | 2_3:+3462768 | Msa0271960:CDS |
| AGTGCCTGTAGAATTGGGAA+AGG | 0.631887 | 2_3:+3463416 | Msa0271960:CDS |
| CACATTCAGTGGGTTCTCGT+AGG | 0.639927 | 2_3:-3463295 | None:intergenic |
| TCTGGTCAGCTAGAGTTAAG+GGG | 0.639985 | 2_3:-3462624 | None:intergenic |
| AAAGTTGGTAAATGTAATGG+CGG | 0.646415 | 2_3:+3463356 | Msa0271960:CDS |
| CAAAGATGCATTTGACCGTG+TGG | 0.650305 | 2_3:+3462501 | Msa0271960:CDS |
| GTTGCCTCATGTATGTGGGA+AGG | 0.650367 | 2_3:+3463175 | Msa0271960:CDS |
| ACCATGTTATTGAAGCCATG+AGG | 0.655990 | 2_3:+3462944 | Msa0271960:CDS |
| GCTAGAGTTAAGGGGTCCTG+AGG | 0.656372 | 2_3:-3462616 | None:intergenic |
| TCACACACTGCAGTATGTAG+AGG | 0.659080 | 2_3:+3463053 | Msa0271960:CDS |
| TTGCAAAGGACATGTAAACA+TGG | 0.659874 | 2_3:-3463516 | None:intergenic |
| CTGCAAATACCACATTCAGT+GGG | 0.676061 | 2_3:-3463305 | None:intergenic |
| CATGTTATTGAAGCCATGAG+GGG | 0.676905 | 2_3:+3462946 | Msa0271960:CDS |
| TATTTGCAGCTGGAATTGAA+GGG | 0.677257 | 2_3:+3463319 | Msa0271960:CDS |
| GAAGCCTTCCCACATACATG+AGG | 0.688518 | 2_3:-3463179 | None:intergenic |
| CAAGTGTCCATATTGTCCAG+CGG | 0.699494 | 2_3:+3463581 | Msa0271960:CDS |
| TGGCGGCAAAGAAACAGGAG+TGG | 0.715659 | 2_3:+3463373 | Msa0271960:CDS |
| TGTCATATCCCAATGAACCG+GGG | 0.743312 | 2_3:-3463229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTTATTCACTCAT+TGG | - | chr2_3:3463749-3463768 | None:intergenic | 15.0% |
| !!! | TTAAAATTTTATTCACTCAT+TGG | - | chr2_3:3463749-3463768 | None:intergenic | 15.0% |
| !! | AAACTGTTGTAAAAAAAACT+AGG | - | chr2_3:3462376-3462395 | None:intergenic | 20.0% |
| !!! | ACAAGTTCTTGAATATTTTA+GGG | - | chr2_3:3463106-3463125 | None:intergenic | 20.0% |
| !! | ATACTTCATCAATGAAATAT+TGG | - | chr2_3:3463665-3463684 | None:intergenic | 20.0% |
| !! | AAACTGTTGTAAAAAAAACT+AGG | - | chr2_3:3462376-3462395 | None:intergenic | 20.0% |
| !!! | ACAAGTTCTTGAATATTTTA+GGG | - | chr2_3:3463106-3463125 | None:intergenic | 20.0% |
| !! | ATACTTCATCAATGAAATAT+TGG | - | chr2_3:3463665-3463684 | None:intergenic | 20.0% |
| !!! | TGCAATTAGATCTCATTTTT+TGG | + | chr2_3:3462915-3462934 | Msa0271960:CDS | 25.0% |
| !! | GACAAGTTCTTGAATATTTT+AGG | - | chr2_3:3463107-3463126 | None:intergenic | 25.0% |
| !!! | GTTAAAGTTGGTAAATGTAA+TGG | + | chr2_3:3463353-3463372 | Msa0271960:CDS | 25.0% |
| ! | ATGAAATATTGGTGAGATAT+GGG | - | chr2_3:3463654-3463673 | None:intergenic | 25.0% |
| ! | AATGAAATATTGGTGAGATA+TGG | - | chr2_3:3463655-3463674 | None:intergenic | 25.0% |
| ! | GTATAACATTTATAGCTTTC+TGG | + | chr2_3:3463681-3463700 | Msa0271960:three_prime_UTR | 25.0% |
| !!! | TGCAATTAGATCTCATTTTT+TGG | + | chr2_3:3462915-3462934 | Msa0271960:CDS | 25.0% |
| !! | GACAAGTTCTTGAATATTTT+AGG | - | chr2_3:3463107-3463126 | None:intergenic | 25.0% |
| !!! | GTTAAAGTTGGTAAATGTAA+TGG | + | chr2_3:3463353-3463372 | Msa0271960:CDS | 25.0% |
| ! | ATGAAATATTGGTGAGATAT+GGG | - | chr2_3:3463654-3463673 | None:intergenic | 25.0% |
| ! | AATGAAATATTGGTGAGATA+TGG | - | chr2_3:3463655-3463674 | None:intergenic | 25.0% |
| ! | GTATAACATTTATAGCTTTC+TGG | + | chr2_3:3463681-3463700 | Msa0271960:three_prime_UTR | 25.0% |
| TGTAAAAAAAACTAGGCATG+TGG | - | chr2_3:3462369-3462388 | None:intergenic | 30.0% | |
| !! | TCTAACCTTTTTGTTTCCTT+AGG | + | chr2_3:3462433-3462452 | Msa0271960:intron | 30.0% |
| !! | CTAACCTTTTTGTTTCCTTA+GGG | + | chr2_3:3462434-3462453 | Msa0271960:intron | 30.0% |
| !! | TAACCTTTTTGTTTCCTTAG+GGG | + | chr2_3:3462435-3462454 | Msa0271960:intron | 30.0% |
| TTGTGATCTGAACATAAAGA+TGG | + | chr2_3:3462459-3462478 | Msa0271960:CDS | 30.0% | |
| ! | GTTCTGTAAGAATTGATTTC+TGG | - | chr2_3:3462645-3462664 | None:intergenic | 30.0% |
| ! | TTCAGTCAGTTTTTGATACT+TGG | - | chr2_3:3462743-3462762 | None:intergenic | 30.0% |
| CAAGATCAAATAAACCTTGA+CGG | - | chr2_3:3462855-3462874 | None:intergenic | 30.0% | |
| TTTACCAACTTTAACAGTGT+GGG | - | chr2_3:3463348-3463367 | None:intergenic | 30.0% | |
| ATTTACCAACTTTAACAGTG+TGG | - | chr2_3:3463349-3463368 | None:intergenic | 30.0% | |
| !! | AAAGTTGGTAAATGTAATGG+CGG | + | chr2_3:3463356-3463375 | Msa0271960:CDS | 30.0% |
| TCATAATTGATTGCTTGCAA+AGG | - | chr2_3:3463533-3463552 | None:intergenic | 30.0% | |
| TGTAAAAAAAACTAGGCATG+TGG | - | chr2_3:3462369-3462388 | None:intergenic | 30.0% | |
| !! | TCTAACCTTTTTGTTTCCTT+AGG | + | chr2_3:3462433-3462452 | Msa0271960:intron | 30.0% |
| !! | CTAACCTTTTTGTTTCCTTA+GGG | + | chr2_3:3462434-3462453 | Msa0271960:intron | 30.0% |
| !! | TAACCTTTTTGTTTCCTTAG+GGG | + | chr2_3:3462435-3462454 | Msa0271960:intron | 30.0% |
| TTGTGATCTGAACATAAAGA+TGG | + | chr2_3:3462459-3462478 | Msa0271960:CDS | 30.0% | |
| ! | GTTCTGTAAGAATTGATTTC+TGG | - | chr2_3:3462645-3462664 | None:intergenic | 30.0% |
| ! | TTCAGTCAGTTTTTGATACT+TGG | - | chr2_3:3462743-3462762 | None:intergenic | 30.0% |
| CAAGATCAAATAAACCTTGA+CGG | - | chr2_3:3462855-3462874 | None:intergenic | 30.0% | |
| TTTACCAACTTTAACAGTGT+GGG | - | chr2_3:3463348-3463367 | None:intergenic | 30.0% | |
| ATTTACCAACTTTAACAGTG+TGG | - | chr2_3:3463349-3463368 | None:intergenic | 30.0% | |
| !! | AAAGTTGGTAAATGTAATGG+CGG | + | chr2_3:3463356-3463375 | Msa0271960:CDS | 30.0% |
| TCATAATTGATTGCTTGCAA+AGG | - | chr2_3:3463533-3463552 | None:intergenic | 30.0% | |
| TTTCTTGCATCTATCTGAAC+AGG | + | chr2_3:3462393-3462412 | Msa0271960:intron | 35.0% | |
| AAGTCAAAGCTCAATGCTAT+TGG | + | chr2_3:3462667-3462686 | Msa0271960:CDS | 35.0% | |
| AGTCAAAGCTCAATGCTATT+GGG | + | chr2_3:3462668-3462687 | Msa0271960:CDS | 35.0% | |
| CTTGAGTTCAATTCCTTAGT+CGG | - | chr2_3:3462715-3462734 | None:intergenic | 35.0% | |
| ATAAACCTTGACGGTAAAAG+TGG | - | chr2_3:3462846-3462865 | None:intergenic | 35.0% | |
| CGTCAAGGTTTATTTGATCT+TGG | + | chr2_3:3462853-3462872 | Msa0271960:CDS | 35.0% | |
| TGGAGATAGCATCATAAATG+AGG | + | chr2_3:3462873-3462892 | Msa0271960:CDS | 35.0% | |
| ATAGCATCATAAATGAGGCT+GGG | + | chr2_3:3462878-3462897 | Msa0271960:CDS | 35.0% | |
| GTTCAAGATTAGAACCAATC+TGG | - | chr2_3:3463026-3463045 | None:intergenic | 35.0% | |
| TATGTAGAGGTTGTGCAAAA+TGG | + | chr2_3:3463066-3463085 | Msa0271960:CDS | 35.0% | |
| !!! | ATATTTTAGGGCATCAGCTT+GGG | - | chr2_3:3463094-3463113 | None:intergenic | 35.0% |
| !!! | AATATTTTAGGGCATCAGCT+TGG | - | chr2_3:3463095-3463114 | None:intergenic | 35.0% |
| TATTTGCAGCTGGAATTGAA+GGG | + | chr2_3:3463319-3463338 | Msa0271960:CDS | 35.0% | |
| AATTCCTTTCCCAATTCTAC+AGG | - | chr2_3:3463423-3463442 | None:intergenic | 35.0% | |
| !! | CCATTCAATTTTTGTTTGCC+CGG | + | chr2_3:3463449-3463468 | Msa0271960:CDS | 35.0% |
| TTGCAAAGGACATGTAAACA+TGG | - | chr2_3:3463519-3463538 | None:intergenic | 35.0% | |
| TTTCTTGCATCTATCTGAAC+AGG | + | chr2_3:3462393-3462412 | Msa0271960:intron | 35.0% | |
| AAGTCAAAGCTCAATGCTAT+TGG | + | chr2_3:3462667-3462686 | Msa0271960:CDS | 35.0% | |
| AGTCAAAGCTCAATGCTATT+GGG | + | chr2_3:3462668-3462687 | Msa0271960:CDS | 35.0% | |
| CTTGAGTTCAATTCCTTAGT+CGG | - | chr2_3:3462715-3462734 | None:intergenic | 35.0% | |
| ATAAACCTTGACGGTAAAAG+TGG | - | chr2_3:3462846-3462865 | None:intergenic | 35.0% | |
| CGTCAAGGTTTATTTGATCT+TGG | + | chr2_3:3462853-3462872 | Msa0271960:CDS | 35.0% | |
| TGGAGATAGCATCATAAATG+AGG | + | chr2_3:3462873-3462892 | Msa0271960:CDS | 35.0% | |
| ATAGCATCATAAATGAGGCT+GGG | + | chr2_3:3462878-3462897 | Msa0271960:CDS | 35.0% | |
| GTTCAAGATTAGAACCAATC+TGG | - | chr2_3:3463026-3463045 | None:intergenic | 35.0% | |
| TATGTAGAGGTTGTGCAAAA+TGG | + | chr2_3:3463066-3463085 | Msa0271960:CDS | 35.0% | |
| !!! | ATATTTTAGGGCATCAGCTT+GGG | - | chr2_3:3463094-3463113 | None:intergenic | 35.0% |
| !!! | AATATTTTAGGGCATCAGCT+TGG | - | chr2_3:3463095-3463114 | None:intergenic | 35.0% |
| TATTTGCAGCTGGAATTGAA+GGG | + | chr2_3:3463319-3463338 | Msa0271960:CDS | 35.0% | |
| AATTCCTTTCCCAATTCTAC+AGG | - | chr2_3:3463423-3463442 | None:intergenic | 35.0% | |
| !! | CCATTCAATTTTTGTTTGCC+CGG | + | chr2_3:3463449-3463468 | Msa0271960:CDS | 35.0% |
| TTGCAAAGGACATGTAAACA+TGG | - | chr2_3:3463519-3463538 | None:intergenic | 35.0% | |
| !!! | GCACTTGTTATAGCTTTTGC+TGG | + | chr2_3:3462323-3462342 | Msa0271960:CDS | 40.0% |
| TCTATCTGAACAGGAGTAAG+TGG | + | chr2_3:3462402-3462421 | Msa0271960:intron | 40.0% | |
| AAGCCCCTAAGGAAACAAAA+AGG | - | chr2_3:3462441-3462460 | None:intergenic | 40.0% | |
| ! | TCTTTTGCTTCTTAGCCACA+CGG | - | chr2_3:3462519-3462538 | None:intergenic | 40.0% |
| GTCAACAGTTTCTTGAGACT+TGG | - | chr2_3:3462551-3462570 | None:intergenic | 40.0% | |
| AAGAAACTGTTGACCAGGTA+GGG | + | chr2_3:3462557-3462576 | Msa0271960:CDS | 40.0% | |
| TTCTGGTCAGCTAGAGTTAA+GGG | - | chr2_3:3462628-3462647 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCAGCTAGAGTTA+AGG | - | chr2_3:3462629-3462648 | None:intergenic | 40.0% |
| GGTCGCTTCAACATTTAGAA+GGG | + | chr2_3:3462689-3462708 | Msa0271960:CDS | 40.0% | |
| GTTAAACCCTGACATCTCAA+AGG | + | chr2_3:3462768-3462787 | Msa0271960:CDS | 40.0% | |
| !! | TGTATGCCTTTGAGATGTCA+GGG | - | chr2_3:3462777-3462796 | None:intergenic | 40.0% |
| ! | CTCAAAGGCATACAGAAATG+TGG | + | chr2_3:3462783-3462802 | Msa0271960:CDS | 40.0% |
| GATAGCATCATAAATGAGGC+TGG | + | chr2_3:3462877-3462896 | Msa0271960:CDS | 40.0% | |
| TAGCATCATAAATGAGGCTG+GGG | + | chr2_3:3462879-3462898 | Msa0271960:CDS | 40.0% | |
| ACCATGTTATTGAAGCCATG+AGG | + | chr2_3:3462944-3462963 | Msa0271960:CDS | 40.0% | |
| CCATGTTATTGAAGCCATGA+GGG | + | chr2_3:3462945-3462964 | Msa0271960:CDS | 40.0% | |
| CATGTTATTGAAGCCATGAG+GGG | + | chr2_3:3462946-3462965 | Msa0271960:CDS | 40.0% | |
| ! | CTGGACAAGTTTTTCACGAT+TGG | - | chr2_3:3463007-3463026 | None:intergenic | 40.0% |
| CGTGAAAAACTTGTCCAGAT+TGG | + | chr2_3:3463009-3463028 | Msa0271960:CDS | 40.0% | |
| ! | TCCTTTTGCCAAGCTTTACA+AGG | + | chr2_3:3463131-3463150 | Msa0271960:CDS | 40.0% |
| TCCTTGTAAAGCTTGGCAAA+AGG | - | chr2_3:3463135-3463154 | None:intergenic | 40.0% | |
| GAACTCATCCTTGTAAAGCT+TGG | - | chr2_3:3463142-3463161 | None:intergenic | 40.0% | |
| GATGAGTTCCACAAGCTTAT+GGG | + | chr2_3:3463153-3463172 | Msa0271960:CDS | 40.0% | |
| TTGTCATATCCCAATGAACC+GGG | - | chr2_3:3463233-3463252 | None:intergenic | 40.0% | |
| GTTGTCATATCCCAATGAAC+CGG | - | chr2_3:3463234-3463253 | None:intergenic | 40.0% | |
| CGACAGTTCTGCTATCTTAT+GGG | + | chr2_3:3463267-3463286 | Msa0271960:CDS | 40.0% | |
| CTGCAAATACCACATTCAGT+GGG | - | chr2_3:3463308-3463327 | None:intergenic | 40.0% | |
| GTATTTGCAGCTGGAATTGA+AGG | + | chr2_3:3463318-3463337 | Msa0271960:CDS | 40.0% | |
| CCGGGCAAACAAAAATTGAA+TGG | - | chr2_3:3463452-3463471 | None:intergenic | 40.0% | |
| !!! | GCACTTGTTATAGCTTTTGC+TGG | + | chr2_3:3462323-3462342 | Msa0271960:CDS | 40.0% |
| TCTATCTGAACAGGAGTAAG+TGG | + | chr2_3:3462402-3462421 | Msa0271960:intron | 40.0% | |
| AAGCCCCTAAGGAAACAAAA+AGG | - | chr2_3:3462441-3462460 | None:intergenic | 40.0% | |
| ! | TCTTTTGCTTCTTAGCCACA+CGG | - | chr2_3:3462519-3462538 | None:intergenic | 40.0% |
| GTCAACAGTTTCTTGAGACT+TGG | - | chr2_3:3462551-3462570 | None:intergenic | 40.0% | |
| AAGAAACTGTTGACCAGGTA+GGG | + | chr2_3:3462557-3462576 | Msa0271960:CDS | 40.0% | |
| TTCTGGTCAGCTAGAGTTAA+GGG | - | chr2_3:3462628-3462647 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCAGCTAGAGTTA+AGG | - | chr2_3:3462629-3462648 | None:intergenic | 40.0% |
| GGTCGCTTCAACATTTAGAA+GGG | + | chr2_3:3462689-3462708 | Msa0271960:CDS | 40.0% | |
| GTTAAACCCTGACATCTCAA+AGG | + | chr2_3:3462768-3462787 | Msa0271960:CDS | 40.0% | |
| !! | TGTATGCCTTTGAGATGTCA+GGG | - | chr2_3:3462777-3462796 | None:intergenic | 40.0% |
| ! | CTCAAAGGCATACAGAAATG+TGG | + | chr2_3:3462783-3462802 | Msa0271960:CDS | 40.0% |
| GATAGCATCATAAATGAGGC+TGG | + | chr2_3:3462877-3462896 | Msa0271960:CDS | 40.0% | |
| TAGCATCATAAATGAGGCTG+GGG | + | chr2_3:3462879-3462898 | Msa0271960:CDS | 40.0% | |
| ACCATGTTATTGAAGCCATG+AGG | + | chr2_3:3462944-3462963 | Msa0271960:CDS | 40.0% | |
| CCATGTTATTGAAGCCATGA+GGG | + | chr2_3:3462945-3462964 | Msa0271960:CDS | 40.0% | |
| CATGTTATTGAAGCCATGAG+GGG | + | chr2_3:3462946-3462965 | Msa0271960:CDS | 40.0% | |
| ! | CTGGACAAGTTTTTCACGAT+TGG | - | chr2_3:3463007-3463026 | None:intergenic | 40.0% |
| CGTGAAAAACTTGTCCAGAT+TGG | + | chr2_3:3463009-3463028 | Msa0271960:CDS | 40.0% | |
| ! | TCCTTTTGCCAAGCTTTACA+AGG | + | chr2_3:3463131-3463150 | Msa0271960:CDS | 40.0% |
| TCCTTGTAAAGCTTGGCAAA+AGG | - | chr2_3:3463135-3463154 | None:intergenic | 40.0% | |
| GAACTCATCCTTGTAAAGCT+TGG | - | chr2_3:3463142-3463161 | None:intergenic | 40.0% | |
| GATGAGTTCCACAAGCTTAT+GGG | + | chr2_3:3463153-3463172 | Msa0271960:CDS | 40.0% | |
| TTGTCATATCCCAATGAACC+GGG | - | chr2_3:3463233-3463252 | None:intergenic | 40.0% | |
| GTTGTCATATCCCAATGAAC+CGG | - | chr2_3:3463234-3463253 | None:intergenic | 40.0% | |
| CGACAGTTCTGCTATCTTAT+GGG | + | chr2_3:3463267-3463286 | Msa0271960:CDS | 40.0% | |
| CTGCAAATACCACATTCAGT+GGG | - | chr2_3:3463308-3463327 | None:intergenic | 40.0% | |
| GTATTTGCAGCTGGAATTGA+AGG | + | chr2_3:3463318-3463337 | Msa0271960:CDS | 40.0% | |
| CCGGGCAAACAAAAATTGAA+TGG | - | chr2_3:3463452-3463471 | None:intergenic | 40.0% | |
| AGGCATGTGGATAGCACAAA+AGG | - | chr2_3:3462356-3462375 | None:intergenic | 45.0% | |
| CAAAGATGCATTTGACCGTG+TGG | + | chr2_3:3462501-3462520 | Msa0271960:CDS | 45.0% | |
| GTCTCAAGAAACTGTTGACC+AGG | + | chr2_3:3462552-3462571 | Msa0271960:CDS | 45.0% | |
| CAAGAAACTGTTGACCAGGT+AGG | + | chr2_3:3462556-3462575 | Msa0271960:CDS | 45.0% | |
| TCTGGTCAGCTAGAGTTAAG+GGG | - | chr2_3:3462627-3462646 | None:intergenic | 45.0% | |
| GGGTCGCTTCAACATTTAGA+AGG | + | chr2_3:3462688-3462707 | Msa0271960:CDS | 45.0% | |
| ACATTTAGAAGGGCCGACTA+AGG | + | chr2_3:3462699-3462718 | Msa0271960:CDS | 45.0% | |
| !! | CTGTATGCCTTTGAGATGTC+AGG | - | chr2_3:3462778-3462797 | None:intergenic | 45.0% |
| CCCTCATGGCTTCAATAACA+TGG | - | chr2_3:3462948-3462967 | None:intergenic | 45.0% | |
| CTGAAGATTTCTACCCCTCA+TGG | - | chr2_3:3462962-3462981 | None:intergenic | 45.0% | |
| TCACACACTGCAGTATGTAG+AGG | + | chr2_3:3463053-3463072 | Msa0271960:CDS | 45.0% | |
| GGATGAGTTCCACAAGCTTA+TGG | + | chr2_3:3463152-3463171 | Msa0271960:CDS | 45.0% | |
| ! | TATGGGTTGCCTCATGTATG+TGG | + | chr2_3:3463170-3463189 | Msa0271960:CDS | 45.0% |
| ! | ATGGGTTGCCTCATGTATGT+GGG | + | chr2_3:3463171-3463190 | Msa0271960:CDS | 45.0% |
| TGTCATATCCCAATGAACCG+GGG | - | chr2_3:3463232-3463251 | None:intergenic | 45.0% | |
| GCGACAGTTCTGCTATCTTA+TGG | + | chr2_3:3463266-3463285 | Msa0271960:CDS | 45.0% | |
| GCTGCAAATACCACATTCAG+TGG | - | chr2_3:3463309-3463328 | None:intergenic | 45.0% | |
| CTGAATGTGGTATTTGCAGC+TGG | + | chr2_3:3463309-3463328 | Msa0271960:CDS | 45.0% | |
| GTTGCCCACACTGTTAAAGT+TGG | + | chr2_3:3463341-3463360 | Msa0271960:CDS | 45.0% | |
| TGTAATGGCGGCAAAGAAAC+AGG | + | chr2_3:3463368-3463387 | Msa0271960:CDS | 45.0% | |
| TTGCCAGTGCCTGTAGAATT+GGG | + | chr2_3:3463411-3463430 | Msa0271960:CDS | 45.0% | |
| TTTCCCAATTCTACAGGCAC+TGG | - | chr2_3:3463417-3463436 | None:intergenic | 45.0% | |
| AGTGCCTGTAGAATTGGGAA+AGG | + | chr2_3:3463416-3463435 | Msa0271960:CDS | 45.0% | |
| !! | TTTTTGTTTGCCCGGTGAGT+AGG | + | chr2_3:3463457-3463476 | Msa0271960:CDS | 45.0% |
| !! | TTTTGTTTGCCCGGTGAGTA+GGG | + | chr2_3:3463458-3463477 | Msa0271960:CDS | 45.0% |
| TGTAAACATGGCAGCAGCAT+TGG | - | chr2_3:3463507-3463526 | None:intergenic | 45.0% | |
| CAAGTGTCCATATTGTCCAG+CGG | + | chr2_3:3463581-3463600 | Msa0271960:CDS | 45.0% | |
| AGGCATGTGGATAGCACAAA+AGG | - | chr2_3:3462356-3462375 | None:intergenic | 45.0% | |
| CAAAGATGCATTTGACCGTG+TGG | + | chr2_3:3462501-3462520 | Msa0271960:CDS | 45.0% | |
| GTCTCAAGAAACTGTTGACC+AGG | + | chr2_3:3462552-3462571 | Msa0271960:CDS | 45.0% | |
| CAAGAAACTGTTGACCAGGT+AGG | + | chr2_3:3462556-3462575 | Msa0271960:CDS | 45.0% | |
| TCTGGTCAGCTAGAGTTAAG+GGG | - | chr2_3:3462627-3462646 | None:intergenic | 45.0% | |
| GGGTCGCTTCAACATTTAGA+AGG | + | chr2_3:3462688-3462707 | Msa0271960:CDS | 45.0% | |
| ACATTTAGAAGGGCCGACTA+AGG | + | chr2_3:3462699-3462718 | Msa0271960:CDS | 45.0% | |
| !! | CTGTATGCCTTTGAGATGTC+AGG | - | chr2_3:3462778-3462797 | None:intergenic | 45.0% |
| CCCTCATGGCTTCAATAACA+TGG | - | chr2_3:3462948-3462967 | None:intergenic | 45.0% | |
| CTGAAGATTTCTACCCCTCA+TGG | - | chr2_3:3462962-3462981 | None:intergenic | 45.0% | |
| TCACACACTGCAGTATGTAG+AGG | + | chr2_3:3463053-3463072 | Msa0271960:CDS | 45.0% | |
| GGATGAGTTCCACAAGCTTA+TGG | + | chr2_3:3463152-3463171 | Msa0271960:CDS | 45.0% | |
| ! | TATGGGTTGCCTCATGTATG+TGG | + | chr2_3:3463170-3463189 | Msa0271960:CDS | 45.0% |
| ! | ATGGGTTGCCTCATGTATGT+GGG | + | chr2_3:3463171-3463190 | Msa0271960:CDS | 45.0% |
| TGTCATATCCCAATGAACCG+GGG | - | chr2_3:3463232-3463251 | None:intergenic | 45.0% | |
| GCGACAGTTCTGCTATCTTA+TGG | + | chr2_3:3463266-3463285 | Msa0271960:CDS | 45.0% | |
| GCTGCAAATACCACATTCAG+TGG | - | chr2_3:3463309-3463328 | None:intergenic | 45.0% | |
| CTGAATGTGGTATTTGCAGC+TGG | + | chr2_3:3463309-3463328 | Msa0271960:CDS | 45.0% | |
| GTTGCCCACACTGTTAAAGT+TGG | + | chr2_3:3463341-3463360 | Msa0271960:CDS | 45.0% | |
| TGTAATGGCGGCAAAGAAAC+AGG | + | chr2_3:3463368-3463387 | Msa0271960:CDS | 45.0% | |
| TTGCCAGTGCCTGTAGAATT+GGG | + | chr2_3:3463411-3463430 | Msa0271960:CDS | 45.0% | |
| TTTCCCAATTCTACAGGCAC+TGG | - | chr2_3:3463417-3463436 | None:intergenic | 45.0% | |
| AGTGCCTGTAGAATTGGGAA+AGG | + | chr2_3:3463416-3463435 | Msa0271960:CDS | 45.0% | |
| !! | TTTTTGTTTGCCCGGTGAGT+AGG | + | chr2_3:3463457-3463476 | Msa0271960:CDS | 45.0% |
| !! | TTTTGTTTGCCCGGTGAGTA+GGG | + | chr2_3:3463458-3463477 | Msa0271960:CDS | 45.0% |
| TGTAAACATGGCAGCAGCAT+TGG | - | chr2_3:3463507-3463526 | None:intergenic | 45.0% | |
| CAAGTGTCCATATTGTCCAG+CGG | + | chr2_3:3463581-3463600 | Msa0271960:CDS | 45.0% | |
| GTTCAGATCACAAGCCCCTA+AGG | - | chr2_3:3462452-3462471 | None:intergenic | 50.0% | |
| GCGTGAAATTGAGCAGGCAT+TGG | + | chr2_3:3462579-3462598 | Msa0271960:CDS | 50.0% | |
| !!! | GCAAGCCACTTTTACCGTCA+AGG | + | chr2_3:3462838-3462857 | Msa0271960:CDS | 50.0% |
| ATCTTCAGCCTGCTCTCACA+TGG | + | chr2_3:3462974-3462993 | Msa0271960:CDS | 50.0% | |
| TCTTCAGCCTGCTCTCACAT+GGG | + | chr2_3:3462975-3462994 | Msa0271960:CDS | 50.0% | |
| TGAGGCAACCCATAAGCTTG+TGG | - | chr2_3:3463164-3463183 | None:intergenic | 50.0% | |
| GTTGCCTCATGTATGTGGGA+AGG | + | chr2_3:3463175-3463194 | Msa0271960:CDS | 50.0% | |
| GAAGCCTTCCCACATACATG+AGG | - | chr2_3:3463182-3463201 | None:intergenic | 50.0% | |
| GGACAGCAACTCAGCATAAG+GGG | - | chr2_3:3463211-3463230 | None:intergenic | 50.0% | |
| GGGACAGCAACTCAGCATAA+GGG | - | chr2_3:3463212-3463231 | None:intergenic | 50.0% | |
| TTATGCTGAGTTGCTGTCCC+CGG | + | chr2_3:3463212-3463231 | Msa0271960:CDS | 50.0% | |
| ! | CACATTCAGTGGGTTCTCGT+AGG | - | chr2_3:3463298-3463317 | None:intergenic | 50.0% |
| CTACGAGAACCCACTGAATG+TGG | + | chr2_3:3463296-3463315 | Msa0271960:CDS | 50.0% | |
| GTTGCCAGTGCCTGTAGAAT+TGG | + | chr2_3:3463410-3463429 | Msa0271960:CDS | 50.0% | |
| TACCTTGATCCCTACTCACC+GGG | - | chr2_3:3463470-3463489 | None:intergenic | 50.0% | |
| CTACCTTGATCCCTACTCAC+CGG | - | chr2_3:3463471-3463490 | None:intergenic | 50.0% | |
| ! | AAACATGGCAGCAGCATTGG+AGG | - | chr2_3:3463504-3463523 | None:intergenic | 50.0% |
| GTAGCTTCCGCTGGACAATA+TGG | - | chr2_3:3463591-3463610 | None:intergenic | 50.0% | |
| GTTCAGATCACAAGCCCCTA+AGG | - | chr2_3:3462452-3462471 | None:intergenic | 50.0% | |
| GCGTGAAATTGAGCAGGCAT+TGG | + | chr2_3:3462579-3462598 | Msa0271960:CDS | 50.0% | |
| !!! | GCAAGCCACTTTTACCGTCA+AGG | + | chr2_3:3462838-3462857 | Msa0271960:CDS | 50.0% |
| ATCTTCAGCCTGCTCTCACA+TGG | + | chr2_3:3462974-3462993 | Msa0271960:CDS | 50.0% | |
| TCTTCAGCCTGCTCTCACAT+GGG | + | chr2_3:3462975-3462994 | Msa0271960:CDS | 50.0% | |
| TGAGGCAACCCATAAGCTTG+TGG | - | chr2_3:3463164-3463183 | None:intergenic | 50.0% | |
| GTTGCCTCATGTATGTGGGA+AGG | + | chr2_3:3463175-3463194 | Msa0271960:CDS | 50.0% | |
| GAAGCCTTCCCACATACATG+AGG | - | chr2_3:3463182-3463201 | None:intergenic | 50.0% | |
| GGACAGCAACTCAGCATAAG+GGG | - | chr2_3:3463211-3463230 | None:intergenic | 50.0% | |
| GGGACAGCAACTCAGCATAA+GGG | - | chr2_3:3463212-3463231 | None:intergenic | 50.0% | |
| TTATGCTGAGTTGCTGTCCC+CGG | + | chr2_3:3463212-3463231 | Msa0271960:CDS | 50.0% | |
| ! | CACATTCAGTGGGTTCTCGT+AGG | - | chr2_3:3463298-3463317 | None:intergenic | 50.0% |
| CTACGAGAACCCACTGAATG+TGG | + | chr2_3:3463296-3463315 | Msa0271960:CDS | 50.0% | |
| GTTGCCAGTGCCTGTAGAAT+TGG | + | chr2_3:3463410-3463429 | Msa0271960:CDS | 50.0% | |
| TACCTTGATCCCTACTCACC+GGG | - | chr2_3:3463470-3463489 | None:intergenic | 50.0% | |
| CTACCTTGATCCCTACTCAC+CGG | - | chr2_3:3463471-3463490 | None:intergenic | 50.0% | |
| ! | AAACATGGCAGCAGCATTGG+AGG | - | chr2_3:3463504-3463523 | None:intergenic | 50.0% |
| GTAGCTTCCGCTGGACAATA+TGG | - | chr2_3:3463591-3463610 | None:intergenic | 50.0% | |
| GCTCAATTTCACGCCCTACC+TGG | - | chr2_3:3462573-3462592 | None:intergenic | 55.0% | |
| GGTAGGGCGTGAAATTGAGC+AGG | + | chr2_3:3462573-3462592 | Msa0271960:CDS | 55.0% | |
| GGCAACACTTCAGTCACCTC+AGG | + | chr2_3:3462600-3462619 | Msa0271960:CDS | 55.0% | |
| GCTAGAGTTAAGGGGTCCTG+AGG | - | chr2_3:3462619-3462638 | None:intergenic | 55.0% | |
| GGGGACAGCAACTCAGCATA+AGG | - | chr2_3:3463213-3463232 | None:intergenic | 55.0% | |
| AGTTGCTGTCCCCGGTTCAT+TGG | + | chr2_3:3463220-3463239 | Msa0271960:CDS | 55.0% | |
| GTTGCTGTCCCCGGTTCATT+GGG | + | chr2_3:3463221-3463240 | Msa0271960:CDS | 55.0% | |
| TGGCGGCAAAGAAACAGGAG+TGG | + | chr2_3:3463373-3463392 | Msa0271960:CDS | 55.0% | |
| GGCAAAGAAACAGGAGTGGC+AGG | + | chr2_3:3463377-3463396 | Msa0271960:CDS | 55.0% | |
| TGTGCAACTGTAGCTTCCGC+TGG | - | chr2_3:3463600-3463619 | None:intergenic | 55.0% | |
| GCTCAATTTCACGCCCTACC+TGG | - | chr2_3:3462573-3462592 | None:intergenic | 55.0% | |
| GGTAGGGCGTGAAATTGAGC+AGG | + | chr2_3:3462573-3462592 | Msa0271960:CDS | 55.0% | |
| GGCAACACTTCAGTCACCTC+AGG | + | chr2_3:3462600-3462619 | Msa0271960:CDS | 55.0% | |
| GCTAGAGTTAAGGGGTCCTG+AGG | - | chr2_3:3462619-3462638 | None:intergenic | 55.0% | |
| GGGGACAGCAACTCAGCATA+AGG | - | chr2_3:3463213-3463232 | None:intergenic | 55.0% | |
| AGTTGCTGTCCCCGGTTCAT+TGG | + | chr2_3:3463220-3463239 | Msa0271960:CDS | 55.0% | |
| GTTGCTGTCCCCGGTTCATT+GGG | + | chr2_3:3463221-3463240 | Msa0271960:CDS | 55.0% | |
| TGGCGGCAAAGAAACAGGAG+TGG | + | chr2_3:3463373-3463392 | Msa0271960:CDS | 55.0% | |
| GGCAAAGAAACAGGAGTGGC+AGG | + | chr2_3:3463377-3463396 | Msa0271960:CDS | 55.0% | |
| TGTGCAACTGTAGCTTCCGC+TGG | - | chr2_3:3463600-3463619 | None:intergenic | 55.0% | |
| GCAGAGACCCATGTGAGAGC+AGG | - | chr2_3:3462985-3463004 | None:intergenic | 60.0% | |
| TGCCCGGTGAGTAGGGATCA+AGG | + | chr2_3:3463465-3463484 | Msa0271960:CDS | 60.0% | |
| GCAGAGACCCATGTGAGAGC+AGG | - | chr2_3:3462985-3463004 | None:intergenic | 60.0% | |
| TGCCCGGTGAGTAGGGATCA+AGG | + | chr2_3:3463465-3463484 | Msa0271960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 3462314 | 3463797 | 3462314 | ID=Msa0271960;Name=Msa0271960 |
| chr2_3 | mRNA | 3462314 | 3463797 | 3462314 | ID=Msa0271960-mRNA-1;Parent=Msa0271960;Name=Msa0271960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0.5|0.5|1|1|2|156|405 |
| chr2_3 | exon | 3462314 | 3462344 | 3462314 | ID=Msa0271960-mRNA-1:exon:1699;Parent=Msa0271960-mRNA-1 |
| chr2_3 | exon | 3462455 | 3463797 | 3462455 | ID=Msa0271960-mRNA-1:exon:1700;Parent=Msa0271960-mRNA-1 |
| chr2_3 | CDS | 3462314 | 3462344 | 3462314 | ID=Msa0271960-mRNA-1:cds;Parent=Msa0271960-mRNA-1 |
| chr2_3 | CDS | 3462455 | 3463641 | 3462455 | ID=Msa0271960-mRNA-1:cds;Parent=Msa0271960-mRNA-1 |
| chr2_3 | three_prime_UTR | 3463642 | 3463797 | 3463642 | ID=Msa0271960-mRNA-1:three_prime_utr;Parent=Msa0271960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
