AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122710 MtrunA17_Chr7g0260541 92.896 183 11 2 1 183 1 181 2.35e-104 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122710 AT3G51510.1 63.380 142 46 2 42 183 45 180 4.28e-53 167

Find 46 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCAAGAACTAATT+TGG 0.171503 7_3:+73165003 None:intergenic
TTGATTCACATACTCAAATA+TGG 0.236469 7_3:+73165929 None:intergenic
TCACAACCCACTACCTTTCT+AGG 0.239762 7_3:-73166303 Msa1122710:CDS
AAGAAGAAGTGGGTTTGTTT+TGG 0.258797 7_3:+73166109 None:intergenic
TGACTCTGCTGAGCCTTCTT+TGG 0.268951 7_3:+73166209 None:intergenic
AACAAACCCACTTCTTCTTC+TGG 0.278305 7_3:-73166105 Msa1122710:CDS
GGAGGAGGTTCTTCTGAGTC+AGG 0.395874 7_3:+73166150 None:intergenic
TTGTTCCTCAGCTTCCTTGT+TGG 0.401097 7_3:+73165243 None:intergenic
ATTTGCTCGATGAAATTGTA+AGG 0.419043 7_3:-73165062 Msa1122710:three_prime_UTR
GTGAATCAAAAGCCAGTGTT+TGG 0.428557 7_3:-73165915 Msa1122710:CDS
GGGAATGCCTAGAAAGGTAG+TGG 0.437259 7_3:+73166296 None:intergenic
CTTTGTCCGCGTAAGTCATA+CGG 0.468893 7_3:-73165174 Msa1122710:three_prime_UTR
GCAAGTAAATAAACATAAAA+CGG 0.478470 7_3:+73166066 None:intergenic
CCCACTTCTTCTTCTGGACA+AGG 0.489189 7_3:-73166099 Msa1122710:CDS
ACTCAGAAGAACCTCCTCCA+TGG 0.530018 7_3:-73166146 Msa1122710:CDS
ACACCATCCATGGCAGTAGC+AGG 0.533148 7_3:-73166387 Msa1122710:exon
CTTCACCGGTGTTCCCACTT+CGG 0.535339 7_3:-73165841 Msa1122710:intron
ACAGTGGCAGTGACCAAAGA+AGG 0.543916 7_3:-73166222 Msa1122710:CDS
AGTTGACAGTGATGAGGAGA+AGG 0.557021 7_3:+73166353 None:intergenic
CTCAGAAGAACCTCCTCCAT+GGG 0.557982 7_3:-73166145 Msa1122710:CDS
ACATAGGGGAATGCCTAGAA+AGG 0.561854 7_3:+73166290 None:intergenic
GTCTGTTCAAGCAGCCAACA+AGG 0.565704 7_3:-73165257 Msa1122710:CDS
CTTCCTGCTACTGCCATGGA+TGG 0.574251 7_3:+73166384 None:intergenic
CGAAGTGGGAACACCGGTGA+AGG 0.578885 7_3:+73165842 None:intergenic
CAATCTACAAACACCATCCA+TGG 0.578967 7_3:-73166397 Msa1122710:exon
AATGAAAGTAATTACCGAAG+TGG 0.584458 7_3:+73165827 None:intergenic
ATGAAAGTAATTACCGAAGT+GGG 0.590373 7_3:+73165828 None:intergenic
GAGTCAGGCTTAGCCCATGA+AGG 0.590685 7_3:+73166165 None:intergenic
CTTGAACAGACTTGAACCAC+AGG 0.591556 7_3:+73165269 None:intergenic
ATTCAATTCAGGCCTTCCTG+TGG 0.597191 7_3:-73165285 Msa1122710:intron
TCCTTGTCCAGAAGAAGAAG+TGG 0.598183 7_3:+73166098 None:intergenic
AGCTGAGGAACAAGACAAGA+GGG 0.603125 7_3:-73165233 Msa1122710:CDS
AGCACTTCCTGCTACTGCCA+TGG 0.605704 7_3:+73166380 None:intergenic
TTTGCTCGATGAAATTGTAA+GGG 0.608182 7_3:-73165061 Msa1122710:three_prime_UTR
AGCAGCCAACAAGGAAGCTG+AGG 0.612169 7_3:-73165248 Msa1122710:CDS
CCTTGTCCAGAAGAAGAAGT+GGG 0.612408 7_3:+73166099 None:intergenic
CAATTTCCGTATGACTTACG+CGG 0.615627 7_3:+73165168 None:intergenic
GAGCTCAAAACTCCAAACAC+TGG 0.621937 7_3:+73165903 None:intergenic
AACAGACTTGAACCACAGGA+AGG 0.628717 7_3:+73165273 None:intergenic
TAGTGGGTTGTGATGCATGT+CGG 0.640516 7_3:+73166313 None:intergenic
AAGCTGAGGAACAAGACAAG+AGG 0.642384 7_3:-73165234 Msa1122710:CDS
GGCAATTGCAGTGATAGCAG+AGG 0.656195 7_3:+73166044 None:intergenic
GAGGAACAAGACAAGAGGGA+TGG 0.660419 7_3:-73165229 Msa1122710:CDS
AATTACCGAAGTGGGAACAC+CGG 0.661017 7_3:+73165836 None:intergenic
GGAATGCCTAGAAAGGTAGT+GGG 0.668295 7_3:+73166297 None:intergenic
ACATACAGTTGACAGTGATG+AGG 0.672865 7_3:+73166347 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTTGAAAATATTTTA+TGG - chr7_3:73165747-73165766 Msa1122710:intron 10.0%
!!! AATAAGTTGAAAATATTTTA+TGG - chr7_3:73165747-73165766 Msa1122710:intron 10.0%
!! GCAAGTAAATAAACATAAAA+CGG + chr7_3:73165323-73165342 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG + chr7_3:73165586-73165605 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG - chr7_3:73165654-73165673 Msa1122710:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG - chr7_3:73165715-73165734 Msa1122710:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG - chr7_3:73165883-73165902 Msa1122710:CDS 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG - chr7_3:73165884-73165903 Msa1122710:CDS 20.0%
!! AAATAGTAGAATGAAGAATA+TGG + chr7_3:73165945-73165964 None:intergenic 20.0%
!! GCAAGTAAATAAACATAAAA+CGG + chr7_3:73165323-73165342 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG + chr7_3:73165586-73165605 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG - chr7_3:73165654-73165673 Msa1122710:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG - chr7_3:73165715-73165734 Msa1122710:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG - chr7_3:73165883-73165902 Msa1122710:CDS 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG - chr7_3:73165884-73165903 Msa1122710:CDS 20.0%
!! AAATAGTAGAATGAAGAATA+TGG + chr7_3:73165945-73165964 None:intergenic 20.0%
!! AAGAGATTAGTTATTTACAG+CGG + chr7_3:73165366-73165385 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG - chr7_3:73165432-73165451 Msa1122710:intron 25.0%
! TTGATTCACATACTCAAATA+TGG + chr7_3:73165460-73165479 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG + chr7_3:73165608-73165627 None:intergenic 25.0%
! ACTGCATTAATTGTTAGATA+TGG - chr7_3:73165805-73165824 Msa1122710:intron 25.0%
! CATTAATTGTTAGATATGGT+AGG - chr7_3:73165809-73165828 Msa1122710:intron 25.0%
! GTTAGAAGTTAGTTATGATT+AGG - chr7_3:73165855-73165874 Msa1122710:CDS 25.0%
! TGAAGAATATGGTTCAATTA+GGG + chr7_3:73165934-73165953 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG + chr7_3:73165935-73165954 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+CGG - chr7_3:73165975-73165994 Msa1122710:intron 25.0%
!! TCAATTTATTTCTCTTAGTC+GGG - chr7_3:73165976-73165995 Msa1122710:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG - chr7_3:73166038-73166057 Msa1122710:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG - chr7_3:73166090-73166109 Msa1122710:CDS 25.0%
! TGCAATTTCAAGAACTAATT+TGG + chr7_3:73166386-73166405 None:intergenic 25.0%
!! AAGAGATTAGTTATTTACAG+CGG + chr7_3:73165366-73165385 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG - chr7_3:73165432-73165451 Msa1122710:intron 25.0%
! TTGATTCACATACTCAAATA+TGG + chr7_3:73165460-73165479 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG + chr7_3:73165608-73165627 None:intergenic 25.0%
! ACTGCATTAATTGTTAGATA+TGG - chr7_3:73165805-73165824 Msa1122710:intron 25.0%
! CATTAATTGTTAGATATGGT+AGG - chr7_3:73165809-73165828 Msa1122710:intron 25.0%
! GTTAGAAGTTAGTTATGATT+AGG - chr7_3:73165855-73165874 Msa1122710:CDS 25.0%
! TGAAGAATATGGTTCAATTA+GGG + chr7_3:73165934-73165953 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG + chr7_3:73165935-73165954 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+CGG - chr7_3:73165975-73165994 Msa1122710:intron 25.0%
!! TCAATTTATTTCTCTTAGTC+GGG - chr7_3:73165976-73165995 Msa1122710:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG - chr7_3:73166038-73166057 Msa1122710:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG - chr7_3:73166090-73166109 Msa1122710:CDS 25.0%
! TGCAATTTCAAGAACTAATT+TGG + chr7_3:73166386-73166405 None:intergenic 25.0%
!!! TGGTGATTTTTTGTTACTGA+GGG + chr7_3:73165132-73165151 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG + chr7_3:73165210-73165229 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG - chr7_3:73165208-73165227 Msa1122710:exon 30.0%
ATGAAAGTAATTACCGAAGT+GGG + chr7_3:73165561-73165580 None:intergenic 30.0%
AATGAAAGTAATTACCGAAG+TGG + chr7_3:73165562-73165581 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG - chr7_3:73165599-73165618 Msa1122710:intron 30.0%
ACTAACTTCTAACTACCTTA+AGG + chr7_3:73165848-73165867 None:intergenic 30.0%
AGAAGTTAGTTATGATTAGG+TGG - chr7_3:73165858-73165877 Msa1122710:CDS 30.0%
ATTTGCTCGATGAAATTGTA+AGG - chr7_3:73166324-73166343 Msa1122710:CDS 30.0%
TTTGCTCGATGAAATTGTAA+GGG - chr7_3:73166325-73166344 Msa1122710:CDS 30.0%
!!! TGGTGATTTTTTGTTACTGA+GGG + chr7_3:73165132-73165151 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG + chr7_3:73165210-73165229 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG - chr7_3:73165208-73165227 Msa1122710:exon 30.0%
ATGAAAGTAATTACCGAAGT+GGG + chr7_3:73165561-73165580 None:intergenic 30.0%
AATGAAAGTAATTACCGAAG+TGG + chr7_3:73165562-73165581 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG - chr7_3:73165599-73165618 Msa1122710:intron 30.0%
ACTAACTTCTAACTACCTTA+AGG + chr7_3:73165848-73165867 None:intergenic 30.0%
AGAAGTTAGTTATGATTAGG+TGG - chr7_3:73165858-73165877 Msa1122710:CDS 30.0%
ATTTGCTCGATGAAATTGTA+AGG - chr7_3:73166324-73166343 Msa1122710:CDS 30.0%
TTTGCTCGATGAAATTGTAA+GGG - chr7_3:73166325-73166344 Msa1122710:CDS 30.0%
!!! GTGGTGATTTTTTGTTACTG+AGG + chr7_3:73165133-73165152 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG - chr7_3:73165135-73165154 Msa1122710:three_prime_UTR 35.0%
CCGATGAAAAAATACCTTCA+TGG - chr7_3:73165207-73165226 Msa1122710:exon 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG + chr7_3:73165279-73165298 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG + chr7_3:73165280-73165299 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG - chr7_3:73165659-73165678 Msa1122710:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG + chr7_3:73165793-73165812 None:intergenic 35.0%
! GGAGATTTGTTTAAGCCTTA+AGG - chr7_3:73165830-73165849 Msa1122710:intron 35.0%
AACTTGGGATCACTGTATAA+AGG - chr7_3:73165899-73165918 Msa1122710:CDS 35.0%
GAATATGGTTCAATTAGGGT+AGG + chr7_3:73165930-73165949 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG + chr7_3:73166007-73166026 None:intergenic 35.0%
!!! GTGGTGATTTTTTGTTACTG+AGG + chr7_3:73165133-73165152 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG - chr7_3:73165135-73165154 Msa1122710:three_prime_UTR 35.0%
CCGATGAAAAAATACCTTCA+TGG - chr7_3:73165207-73165226 Msa1122710:exon 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG + chr7_3:73165279-73165298 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG + chr7_3:73165280-73165299 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG - chr7_3:73165659-73165678 Msa1122710:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG + chr7_3:73165793-73165812 None:intergenic 35.0%
! GGAGATTTGTTTAAGCCTTA+AGG - chr7_3:73165830-73165849 Msa1122710:intron 35.0%
AACTTGGGATCACTGTATAA+AGG - chr7_3:73165899-73165918 Msa1122710:CDS 35.0%
GAATATGGTTCAATTAGGGT+AGG + chr7_3:73165930-73165949 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG + chr7_3:73166007-73166026 None:intergenic 35.0%
ACATACAGTTGACAGTGATG+AGG + chr7_3:73165042-73165061 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG - chr7_3:73165148-73165167 Msa1122710:three_prime_UTR 40.0%
AACAAACCCACTTCTTCTTC+TGG - chr7_3:73165281-73165300 Msa1122710:intron 40.0%
GTGAATCAAAAGCCAGTGTT+TGG - chr7_3:73165471-73165490 Msa1122710:intron 40.0%
! GTTTTCTATGCTCCTTTGCT+TGG - chr7_3:73165513-73165532 Msa1122710:intron 40.0%
AAGGCGAAAAAACCAAGCAA+AGG + chr7_3:73165528-73165547 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG - chr7_3:73165664-73165683 Msa1122710:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG - chr7_3:73165665-73165684 Msa1122710:intron 40.0%
CAATTTCCGTATGACTTACG+CGG + chr7_3:73166221-73166240 None:intergenic 40.0%
ACATACAGTTGACAGTGATG+AGG + chr7_3:73165042-73165061 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG - chr7_3:73165148-73165167 Msa1122710:three_prime_UTR 40.0%
AACAAACCCACTTCTTCTTC+TGG - chr7_3:73165281-73165300 Msa1122710:intron 40.0%
GTGAATCAAAAGCCAGTGTT+TGG - chr7_3:73165471-73165490 Msa1122710:intron 40.0%
! GTTTTCTATGCTCCTTTGCT+TGG - chr7_3:73165513-73165532 Msa1122710:intron 40.0%
AAGGCGAAAAAACCAAGCAA+AGG + chr7_3:73165528-73165547 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG - chr7_3:73165664-73165683 Msa1122710:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG - chr7_3:73165665-73165684 Msa1122710:intron 40.0%
CAATTTCCGTATGACTTACG+CGG + chr7_3:73166221-73166240 None:intergenic 40.0%
AGTTGACAGTGATGAGGAGA+AGG + chr7_3:73165036-73165055 None:intergenic 45.0%
!! TAGTGGGTTGTGATGCATGT+CGG + chr7_3:73165076-73165095 None:intergenic 45.0%
TCACAACCCACTACCTTTCT+AGG - chr7_3:73165083-73165102 Msa1122710:three_prime_UTR 45.0%
GGAATGCCTAGAAAGGTAGT+GGG + chr7_3:73165092-73165111 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG + chr7_3:73165099-73165118 None:intergenic 45.0%
! AGGGACGTTTTCAGACATAG+GGG + chr7_3:73165113-73165132 None:intergenic 45.0%
! GAGGGACGTTTTCAGACATA+GGG + chr7_3:73165114-73165133 None:intergenic 45.0%
! TGAGGGACGTTTTCAGACAT+AGG + chr7_3:73165115-73165134 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG + chr7_3:73165152-73165171 None:intergenic 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG + chr7_3:73165290-73165309 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG + chr7_3:73165291-73165310 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG + chr7_3:73165486-73165505 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG - chr7_3:73165531-73165550 Msa1122710:intron 45.0%
AATTACCGAAGTGGGAACAC+CGG + chr7_3:73165553-73165572 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG + chr7_3:73165680-73165699 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG - chr7_3:73166101-73166120 Msa1122710:CDS 45.0%
AACAGACTTGAACCACAGGA+AGG + chr7_3:73166116-73166135 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG + chr7_3:73166120-73166139 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG + chr7_3:73166146-73166165 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG - chr7_3:73166152-73166171 Msa1122710:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG - chr7_3:73166153-73166172 Msa1122710:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG + chr7_3:73166203-73166222 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG - chr7_3:73166212-73166231 Msa1122710:CDS 45.0%
AGTTGACAGTGATGAGGAGA+AGG + chr7_3:73165036-73165055 None:intergenic 45.0%
!! TAGTGGGTTGTGATGCATGT+CGG + chr7_3:73165076-73165095 None:intergenic 45.0%
TCACAACCCACTACCTTTCT+AGG - chr7_3:73165083-73165102 Msa1122710:three_prime_UTR 45.0%
GGAATGCCTAGAAAGGTAGT+GGG + chr7_3:73165092-73165111 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG + chr7_3:73165099-73165118 None:intergenic 45.0%
! AGGGACGTTTTCAGACATAG+GGG + chr7_3:73165113-73165132 None:intergenic 45.0%
! GAGGGACGTTTTCAGACATA+GGG + chr7_3:73165114-73165133 None:intergenic 45.0%
! TGAGGGACGTTTTCAGACAT+AGG + chr7_3:73165115-73165134 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG + chr7_3:73165152-73165171 None:intergenic 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG + chr7_3:73165290-73165309 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG + chr7_3:73165291-73165310 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG + chr7_3:73165486-73165505 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG - chr7_3:73165531-73165550 Msa1122710:intron 45.0%
AATTACCGAAGTGGGAACAC+CGG + chr7_3:73165553-73165572 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG + chr7_3:73165680-73165699 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG - chr7_3:73166101-73166120 Msa1122710:CDS 45.0%
AACAGACTTGAACCACAGGA+AGG + chr7_3:73166116-73166135 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG + chr7_3:73166120-73166139 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG + chr7_3:73166146-73166165 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG - chr7_3:73166152-73166171 Msa1122710:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG - chr7_3:73166153-73166172 Msa1122710:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG + chr7_3:73166203-73166222 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG - chr7_3:73166212-73166231 Msa1122710:CDS 45.0%
GGGAATGCCTAGAAAGGTAG+TGG + chr7_3:73165093-73165112 None:intergenic 50.0%
ACAGTGGCAGTGACCAAAGA+AGG - chr7_3:73165164-73165183 Msa1122710:three_prime_UTR 50.0%
TGACTCTGCTGAGCCTTCTT+TGG + chr7_3:73165180-73165199 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG - chr7_3:73165240-73165259 Msa1122710:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG - chr7_3:73165241-73165260 Msa1122710:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG + chr7_3:73165254-73165273 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG + chr7_3:73165257-73165276 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG + chr7_3:73165260-73165279 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG - chr7_3:73165287-73165306 Msa1122710:intron 50.0%
GGCAATTGCAGTGATAGCAG+AGG + chr7_3:73165345-73165364 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG - chr7_3:73165668-73165687 Msa1122710:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG - chr7_3:73166129-73166148 Msa1122710:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG - chr7_3:73166157-73166176 Msa1122710:CDS 50.0%
GGGAATGCCTAGAAAGGTAG+TGG + chr7_3:73165093-73165112 None:intergenic 50.0%
ACAGTGGCAGTGACCAAAGA+AGG - chr7_3:73165164-73165183 Msa1122710:three_prime_UTR 50.0%
TGACTCTGCTGAGCCTTCTT+TGG + chr7_3:73165180-73165199 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG - chr7_3:73165240-73165259 Msa1122710:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG - chr7_3:73165241-73165260 Msa1122710:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG + chr7_3:73165254-73165273 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG + chr7_3:73165257-73165276 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG + chr7_3:73165260-73165279 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG - chr7_3:73165287-73165306 Msa1122710:intron 50.0%
GGCAATTGCAGTGATAGCAG+AGG + chr7_3:73165345-73165364 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG - chr7_3:73165668-73165687 Msa1122710:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG - chr7_3:73166129-73166148 Msa1122710:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG - chr7_3:73166157-73166176 Msa1122710:CDS 50.0%
ACACCATCCATGGCAGTAGC+AGG - chr7_3:73164999-73165018 Msa1122710:three_prime_UTR 55.0%
CTTCCTGCTACTGCCATGGA+TGG + chr7_3:73165005-73165024 None:intergenic 55.0%
AGCACTTCCTGCTACTGCCA+TGG + chr7_3:73165009-73165028 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG + chr7_3:73165224-73165243 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG + chr7_3:73165239-73165258 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG - chr7_3:73165545-73165564 Msa1122710:intron 55.0%
AGCAGCCAACAAGGAAGCTG+AGG - chr7_3:73166138-73166157 Msa1122710:CDS 55.0%
ACACCATCCATGGCAGTAGC+AGG - chr7_3:73164999-73165018 Msa1122710:three_prime_UTR 55.0%
CTTCCTGCTACTGCCATGGA+TGG + chr7_3:73165005-73165024 None:intergenic 55.0%
AGCACTTCCTGCTACTGCCA+TGG + chr7_3:73165009-73165028 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG + chr7_3:73165224-73165243 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG + chr7_3:73165239-73165258 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG - chr7_3:73165545-73165564 Msa1122710:intron 55.0%
AGCAGCCAACAAGGAAGCTG+AGG - chr7_3:73166138-73166157 Msa1122710:CDS 55.0%
CGAAGTGGGAACACCGGTGA+AGG + chr7_3:73165547-73165566 None:intergenic 60.0%
CGAAGTGGGAACACCGGTGA+AGG + chr7_3:73165547-73165566 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 73164990 73166418 73164990 ID=Msa1122710;Name=Msa1122710
chr7_3 mRNA 73164990 73166418 73164990 ID=Msa1122710-mRNA-1;Parent=Msa1122710;Name=Msa1122710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18|1|1|1|1|1|3|232|183
chr7_3 exon 73164990 73165296 73164990 ID=Msa1122710-mRNA-1:exon:19143;Parent=Msa1122710-mRNA-1
chr7_3 exon 73165842 73165958 73165842 ID=Msa1122710-mRNA-1:exon:19142;Parent=Msa1122710-mRNA-1
chr7_3 exon 73166041 73166418 73166041 ID=Msa1122710-mRNA-1:exon:19141;Parent=Msa1122710-mRNA-1
chr7_3 five_prime_UTR 73166401 73166418 73166401 ID=Msa1122710-mRNA-1:five_prime_utr;Parent=Msa1122710-mRNA-1
chr7_3 CDS 73166041 73166400 73166041 ID=Msa1122710-mRNA-1:cds;Parent=Msa1122710-mRNA-1
chr7_3 CDS 73165842 73165958 73165842 ID=Msa1122710-mRNA-1:cds;Parent=Msa1122710-mRNA-1
chr7_3 CDS 73165222 73165296 73165222 ID=Msa1122710-mRNA-1:cds;Parent=Msa1122710-mRNA-1
chr7_3 three_prime_UTR 73164990 73165221 73164990 ID=Msa1122710-mRNA-1:three_prime_utr;Parent=Msa1122710-mRNA-1
Gene Sequence

>Msa1122710

ATGGCAGTAGCAGGAAGTGCTGCTACCTTCTCCTCATCACTGTCAACTGTATGTTTGTTACAAAACCGACATGCATCACAACCCACTACCTTTCTAGGCATTCCCCTATGTCTGAAAACGTCCCTCAGTAACAAAAAATCACCACACAGGTTTTTAACAGTGGCAGTGACCAAAGAAGGCTCAGCAGAGTCAAGTAAATCCGATGAAAAAATACCTTCATGGGCTAAGCCTGACTCAGAAGAACCTCCTCCATGGGCTCAAAATGAAGCCCAAAACAAACCCACTTCTTCTTCTGGACAAGGATTTGTTATTCCGTTTTATGTTTATTTACTTGCCTCTGCTATCACTGCAATTGCCGCTATTGGTTCCATATTTGAGTATGTGAATCAAAAGCCAGTGTTTGGAGTTTTGAGCTCTGATAGTGTTTTCTATGCTCCTTTGCTTGGTTTTTTCGCCTTCACCGGTGTTCCCACTTCGGCCTTCCTGTGGTTCAAGTCTGTTCAAGCAGCCAACAAGGAAGCTGAGGAACAAGACAAGAGGGATGGTTATTAA

Protein sequence

>Msa1122710

MAVAGSAATFSSSLSTVCLLQNRHASQPTTFLGIPLCLKTSLSNKKSPHRFLTVAVTKEGSAESSKSDEKIPSWAKPDSEEPPPWAQNEAQNKPTSSSGQGFVIPFYVYLLASAITAIAAIGSIFEYVNQKPVFGVLSSDSVFYAPLLGFFAFTGVPTSAFLWFKSVQAANKEAEEQDKRDGY*