Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993390 | XP_039682757.1 | 89.492 | 295 | 28 | 1 | 1 | 295 | 21 | 312 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993390 | sp|Q9FJ81|CCB2_ARATH | 58.498 | 253 | 97 | 4 | 44 | 295 | 30 | 275 | 2.32e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993390 | A0A396HHQ4 | 89.492 | 295 | 28 | 1 | 1 | 295 | 21 | 312 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0993390 | 0.812713 | 3.691472e-51 | -8.615850e-47 |
| Msa0020630 | Msa0993390 | 0.812948 | 3.279429e-51 | -8.615850e-47 |
| Msa0024680 | Msa0993390 | 0.822311 | 2.535887e-53 | -8.615850e-47 |
| Msa0027540 | Msa0993390 | 0.823832 | 1.120382e-53 | -8.615850e-47 |
| Msa0050430 | Msa0993390 | 0.807719 | 4.405818e-50 | -8.615850e-47 |
| Msa0055280 | Msa0993390 | 0.802725 | 4.894215e-49 | -8.615850e-47 |
| Msa0075310 | Msa0993390 | 0.822030 | 2.946167e-53 | -8.615850e-47 |
| Msa0094100 | Msa0993390 | 0.813185 | 2.909071e-51 | -8.615850e-47 |
| Msa0101060 | Msa0993390 | 0.805037 | 1.619790e-49 | -8.615850e-47 |
| Msa0105420 | Msa0993390 | 0.819329 | 1.229564e-52 | -8.615850e-47 |
| Msa0120330 | Msa0993390 | 0.829018 | 6.508027e-55 | -8.615850e-47 |
| Msa0605620 | Msa0993390 | 0.826418 | 2.742737e-54 | -8.615850e-47 |
| Msa0620640 | Msa0993390 | 0.806878 | 6.641862e-50 | -8.615850e-47 |
| Msa0621890 | Msa0993390 | 0.853998 | 1.648846e-61 | -8.615850e-47 |
| Msa0638320 | Msa0993390 | 0.806994 | 6.277270e-50 | -8.615850e-47 |
| Msa0642650 | Msa0993390 | 0.816560 | 5.193318e-52 | -8.615850e-47 |
| Msa0657670 | Msa0993390 | 0.804686 | 1.918049e-49 | -8.615850e-47 |
| Msa0668090 | Msa0993390 | 0.802453 | 5.570941e-49 | -8.615850e-47 |
| Msa0669850 | Msa0993390 | 0.807816 | 4.200674e-50 | -8.615850e-47 |
| Msa0674220 | Msa0993390 | 0.804147 | 2.483148e-49 | -8.615850e-47 |
| Msa0677270 | Msa0993390 | 0.805273 | 1.445595e-49 | -8.615850e-47 |
| Msa0707780 | Msa0993390 | 0.821528 | 3.849828e-53 | -8.615850e-47 |
| Msa0725480 | Msa0993390 | -0.802636 | 5.106478e-49 | -8.615850e-47 |
| Msa0730180 | Msa0993390 | 0.819293 | 1.253131e-52 | -8.615850e-47 |
| Msa0733000 | Msa0993390 | 0.806762 | 7.026474e-50 | -8.615850e-47 |
| Msa0754720 | Msa0993390 | -0.822925 | 1.825179e-53 | -8.615850e-47 |
| Msa0756630 | Msa0993390 | -0.810703 | 1.010326e-50 | -8.615850e-47 |
| Msa0770430 | Msa0993390 | 0.824012 | 1.016582e-53 | -8.615850e-47 |
| Msa0792510 | Msa0993390 | 0.819477 | 1.137597e-52 | -8.615850e-47 |
| Msa0820670 | Msa0993390 | 0.803245 | 3.821561e-49 | -8.615850e-47 |
| Msa0837990 | Msa0993390 | 0.833163 | 6.243677e-56 | -8.615850e-47 |
| Msa0132180 | Msa0993390 | 0.807743 | 4.353950e-50 | -8.615850e-47 |
| Msa0145670 | Msa0993390 | 0.809746 | 1.624489e-50 | -8.615850e-47 |
| Msa0149500 | Msa0993390 | 0.801514 | 8.684856e-49 | -8.615850e-47 |
| Msa0159750 | Msa0993390 | 0.810639 | 1.042898e-50 | -8.615850e-47 |
| Msa0162030 | Msa0993390 | 0.819744 | 9.889417e-53 | -8.615850e-47 |
| Msa0162050 | Msa0993390 | 0.817778 | 2.763768e-52 | -8.615850e-47 |
| Msa0162070 | Msa0993390 | 0.815683 | 8.152992e-52 | -8.615850e-47 |
| Msa0168100 | Msa0993390 | 0.832950 | 7.053059e-56 | -8.615850e-47 |
| Msa0172350 | Msa0993390 | 0.813798 | 2.132676e-51 | -8.615850e-47 |
| Msa0182930 | Msa0993390 | 0.808257 | 3.384385e-50 | -8.615850e-47 |
| Msa0183610 | Msa0993390 | 0.810488 | 1.124607e-50 | -8.615850e-47 |
| Msa0194570 | Msa0993390 | 0.814355 | 1.607508e-51 | -8.615850e-47 |
| Msa0200950 | Msa0993390 | -0.812385 | 4.353306e-51 | -8.615850e-47 |
| Msa0207000 | Msa0993390 | 0.806113 | 9.628478e-50 | -8.615850e-47 |
| Msa0208630 | Msa0993390 | 0.808777 | 2.621334e-50 | -8.615850e-47 |
| Msa0223100 | Msa0993390 | 0.816855 | 4.458376e-52 | -8.615850e-47 |
| Msa0223290 | Msa0993390 | 0.813914 | 2.011207e-51 | -8.615850e-47 |
| Msa0227500 | Msa0993390 | 0.819244 | 1.286079e-52 | -8.615850e-47 |
| Msa0419620 | Msa0993390 | -0.800852 | 1.186558e-48 | -8.615850e-47 |
| Msa0423360 | Msa0993390 | -0.817150 | 3.828764e-52 | -8.615850e-47 |
| Msa0442880 | Msa0993390 | 0.823253 | 1.529757e-53 | -8.615850e-47 |
| Msa0448080 | Msa0993390 | 0.805581 | 1.245977e-49 | -8.615850e-47 |
| Msa0467920 | Msa0993390 | -0.816758 | 4.689482e-52 | -8.615850e-47 |
| Msa0480320 | Msa0993390 | 0.801664 | 8.092181e-49 | -8.615850e-47 |
| Msa0993390 | Msa1004210 | 0.802241 | 6.160489e-49 | -8.615850e-47 |
| Msa0993390 | Msa1036390 | 0.817074 | 3.982731e-52 | -8.615850e-47 |
| Msa0993390 | Msa1040120 | 0.806964 | 6.368849e-50 | -8.615850e-47 |
| Msa0993390 | Msa1046610 | 0.805459 | 1.321475e-49 | -8.615850e-47 |
| Msa0993390 | Msa1076680 | 0.810289 | 1.241024e-50 | -8.615850e-47 |
| Msa0993390 | Msa1097210 | 0.820078 | 8.294430e-53 | -8.615850e-47 |
| Msa0993390 | Msa1097380 | 0.846539 | 2.038588e-59 | -8.615850e-47 |
| Msa0993390 | Msa1120540 | 0.801406 | 9.140338e-49 | -8.615850e-47 |
| Msa0993390 | Msa1149760 | 0.815669 | 8.212821e-52 | -8.615850e-47 |
| Msa0993390 | Msa1159100 | 0.806278 | 8.889151e-50 | -8.615850e-47 |
| Msa0993390 | Msa1166970 | 0.818530 | 1.868556e-52 | -8.615850e-47 |
| Msa0993390 | Msa1217860 | 0.820233 | 7.643178e-53 | -8.615850e-47 |
| Msa0993390 | Msa1220230 | 0.849974 | 2.290330e-60 | -8.615850e-47 |
| Msa0993390 | Msa1221200 | -0.807754 | 4.332010e-50 | -8.615850e-47 |
| Msa0993390 | Msa1265960 | 0.844154 | 9.012367e-59 | -8.615850e-47 |
| Msa0993390 | Msa1319580 | 0.840401 | 8.891352e-58 | -8.615850e-47 |
| Msa0993390 | Msa1323060 | 0.804993 | 1.654278e-49 | -8.615850e-47 |
| Msa0993390 | Msa1326000 | 0.822798 | 1.953609e-53 | -8.615850e-47 |
| Msa0993390 | Msa1352290 | 0.814215 | 1.726040e-51 | -8.615850e-47 |
| Msa0993390 | Msa1358870 | -0.824464 | 7.959907e-54 | -8.615850e-47 |
| Msa0993390 | Msa1367940 | 0.814841 | 1.254745e-51 | -8.615850e-47 |
| Msa0993390 | Msa1373950 | 0.814227 | 1.715616e-51 | -8.615850e-47 |
| Msa0993390 | Msa1385900 | 0.826784 | 2.243177e-54 | -8.615850e-47 |
| Msa0993390 | Msa1390310 | 0.810602 | 1.062109e-50 | -8.615850e-47 |
| Msa0993390 | Msa1427830 | 0.807658 | 4.538404e-50 | -8.615850e-47 |
| Msa0993390 | Msa1431000 | 0.846408 | 2.213791e-59 | -8.615850e-47 |
| Msa0993390 | Msa1439960 | 0.813158 | 2.948377e-51 | -8.615850e-47 |
| Msa0993390 | Msa1447160 | -0.801902 | 7.232999e-49 | -8.615850e-47 |
| Msa0993390 | Msa1454110 | 0.804634 | 1.966513e-49 | -8.615850e-47 |
| Msa0993390 | Msa1456810 | 0.813560 | 2.406223e-51 | -8.615850e-47 |
| Msa0258670 | Msa0993390 | -0.810786 | 9.695432e-51 | -8.615850e-47 |
| Msa0265820 | Msa0993390 | 0.807848 | 4.136670e-50 | -8.615850e-47 |
| Msa0267760 | Msa0993390 | 0.820605 | 6.279725e-53 | -8.615850e-47 |
| Msa0284780 | Msa0993390 | 0.827883 | 1.223295e-54 | -8.615850e-47 |
| Msa0288240 | Msa0993390 | 0.803352 | 3.632541e-49 | -8.615850e-47 |
| Msa0298940 | Msa0993390 | 0.808664 | 2.771560e-50 | -8.615850e-47 |
| Msa0298970 | Msa0993390 | 0.822812 | 1.938617e-53 | -8.615850e-47 |
| Msa0314790 | Msa0993390 | 0.808132 | 3.599665e-50 | -8.615850e-47 |
| Msa0319200 | Msa0993390 | 0.805196 | 1.500468e-49 | -8.615850e-47 |
| Msa0325470 | Msa0993390 | 0.820984 | 5.137074e-53 | -8.615850e-47 |
| Msa0326670 | Msa0993390 | 0.809359 | 1.967517e-50 | -8.615850e-47 |
| Msa0339860 | Msa0993390 | 0.809020 | 2.325299e-50 | -8.615850e-47 |
| Msa0356550 | Msa0993390 | -0.805186 | 1.507190e-49 | -8.615850e-47 |
| Msa0490350 | Msa0993390 | 0.826605 | 2.475391e-54 | -8.615850e-47 |
| Msa0497770 | Msa0993390 | -0.811859 | 5.669518e-51 | -8.615850e-47 |
| Msa0508200 | Msa0993390 | 0.831086 | 2.037727e-55 | -8.615850e-47 |
| Msa0524050 | Msa0993390 | 0.802366 | 5.803741e-49 | -8.615850e-47 |
| Msa0526710 | Msa0993390 | 0.813449 | 2.545527e-51 | -8.615850e-47 |
| Msa0531990 | Msa0993390 | -0.800780 | 1.227402e-48 | -8.615850e-47 |
| Msa0532100 | Msa0993390 | -0.803416 | 3.522612e-49 | -8.615850e-47 |
| Msa0535030 | Msa0993390 | 0.812077 | 5.083403e-51 | -8.615850e-47 |
| Msa0535060 | Msa0993390 | 0.816076 | 6.662462e-52 | -8.615850e-47 |
| Msa0546380 | Msa0993390 | 0.841556 | 4.424587e-58 | -8.615850e-47 |
| Msa0564930 | Msa0993390 | 0.815891 | 7.329407e-52 | -8.615850e-47 |
| Msa0574170 | Msa0993390 | 0.809517 | 1.819883e-50 | -8.615850e-47 |
| Msa0576420 | Msa0993390 | 0.805865 | 1.086145e-49 | -8.615850e-47 |
| Msa0582110 | Msa0993390 | 0.801228 | 9.942071e-49 | -8.615850e-47 |
| Msa0847200 | Msa0993390 | 0.811923 | 5.489967e-51 | -8.615850e-47 |
| Msa0851740 | Msa0993390 | 0.803940 | 2.742038e-49 | -8.615850e-47 |
| Msa0854570 | Msa0993390 | 0.807897 | 4.037999e-50 | -8.615850e-47 |
| Msa0894890 | Msa0993390 | 0.805432 | 1.338474e-49 | -8.615850e-47 |
| Msa0907700 | Msa0993390 | 0.816429 | 5.555735e-52 | -8.615850e-47 |
| Msa0909710 | Msa0993390 | 0.807029 | 6.170037e-50 | -8.615850e-47 |
| Msa0922540 | Msa0993390 | 0.800066 | 1.715862e-48 | -8.615850e-47 |
| Msa0925160 | Msa0993390 | 0.827971 | 1.164652e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993390 | MtrunA17_Chr6g0477031 | 89.492 | 295 | 28 | 1 | 1 | 295 | 21 | 312 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993390 | AT5G52110.1 | 58.498 | 253 | 97 | 4 | 44 | 295 | 30 | 275 | 2.36e-103 | 303 |
| Msa0993390 | AT5G52110.2 | 58.498 | 253 | 97 | 4 | 44 | 295 | 30 | 275 | 2.36e-103 | 303 |
Find 77 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTGTGTTGGTGGAAT+TGG | 0.161638 | 6_4:+65900904 | None:intergenic |
| TTATTTGAACCACAAATTTC+TGG | 0.178305 | 6_4:+65896374 | None:intergenic |
| TGTTTCAGATTCTGAATTTC+AGG | 0.211639 | 6_4:-65897777 | Msa0993390:intron |
| TGGGTTGTGTTGGTGGAATT+GGG | 0.292902 | 6_4:+65900905 | None:intergenic |
| CTGCATCTTGTGGAAAATAT+AGG | 0.299034 | 6_4:+65898212 | None:intergenic |
| TCTGTTCTTCGCTTCACATT+AGG | 0.300301 | 6_4:-65900848 | Msa0993390:intron |
| CACCTTTGTTATATCATGAT+TGG | 0.306871 | 6_4:-65896612 | Msa0993390:three_prime_UTR |
| TCGATAGAAACTTGTAATAT+TGG | 0.317636 | 6_4:+65897716 | None:intergenic |
| AAATTCTTCTGGAACAGTTT+AGG | 0.323538 | 6_4:-65898276 | Msa0993390:CDS |
| TAATGGGACTCGTTCTCTTC+TGG | 0.331079 | 6_4:-65897744 | Msa0993390:CDS |
| TTTCAGGAACTTGTACCTAA+TGG | 0.333440 | 6_4:-65897761 | Msa0993390:CDS |
| AGATGGATTGGTTATGCATT+TGG | 0.336848 | 6_4:-65900649 | Msa0993390:CDS |
| ATGAATCTTACTTACCTAGA+TGG | 0.344186 | 6_4:-65900666 | Msa0993390:CDS |
| TTCATCGAAAGAAATTCTTC+TGG | 0.346850 | 6_4:-65898287 | Msa0993390:CDS |
| TATGTAGAGAACAGAGGTTT+TGG | 0.349833 | 6_4:-65899377 | Msa0993390:intron |
| TTCAGGAACTTGTACCTAAT+GGG | 0.360818 | 6_4:-65897760 | Msa0993390:CDS |
| TGCATCTTGTGGAAAATATA+GGG | 0.368072 | 6_4:+65898213 | None:intergenic |
| AATTTCTTTCGATGAATCAT+TGG | 0.381666 | 6_4:+65898294 | None:intergenic |
| AATATTTGTTGTGCTTCATC+TGG | 0.385687 | 6_4:+65898644 | None:intergenic |
| AACCACAAATTTCTGGATCA+AGG | 0.404189 | 6_4:+65896381 | None:intergenic |
| ATATATGCGCAAGGGGCTAC+TGG | 0.408019 | 6_4:-65898324 | Msa0993390:CDS |
| TTGTTGTTGGGTTGTGTTGG+TGG | 0.408245 | 6_4:+65900898 | None:intergenic |
| GCTATTACCTCTAAGCTTGT+TGG | 0.408859 | 6_4:+65897592 | None:intergenic |
| GTTGGCAACAGCTGCAATCC+AGG | 0.421141 | 6_4:+65897610 | None:intergenic |
| TATAAAATTGAATTGAAGCT+AGG | 0.440009 | 6_4:+65896817 | None:intergenic |
| AACCTTGATCCAGAAATTTG+TGG | 0.443250 | 6_4:-65896383 | Msa0993390:three_prime_UTR |
| ACCAGTTGGATTTATTCTGC+TGG | 0.446677 | 6_4:-65897672 | Msa0993390:CDS |
| GCTGTTGCCAACAAGCTTAG+AGG | 0.457265 | 6_4:-65897599 | Msa0993390:intron |
| GGTATAGTTGTTTGTTCCAC+CGG | 0.459040 | 6_4:+65898665 | None:intergenic |
| GTTTAGTTTGATGCTTCAAA+AGG | 0.459936 | 6_4:+65896339 | None:intergenic |
| TTAGCATTAAAGACAGAGCC+TGG | 0.460642 | 6_4:-65897628 | Msa0993390:CDS |
| GGACGGTCTGAAGGAAGATC+TGG | 0.460993 | 6_4:-65898600 | Msa0993390:CDS |
| AGAAGAGAACGAGTCCCATT+AGG | 0.465946 | 6_4:+65897746 | None:intergenic |
| TGTTTGATTTCAGGGATACC+TGG | 0.467347 | 6_4:-65900694 | Msa0993390:intron |
| CAACAATATCTTCGAAACCT+TGG | 0.468231 | 6_4:-65901012 | Msa0993390:CDS |
| TCTTACTTACCTAGATGGAT+TGG | 0.475217 | 6_4:-65900661 | Msa0993390:CDS |
| GTCTGAAGGAAGATCTGGCT+TGG | 0.484196 | 6_4:-65898595 | Msa0993390:CDS |
| AATGCATAACCAATCCATCT+AGG | 0.488319 | 6_4:+65900652 | None:intergenic |
| TTGAGAAATTTACCAAGGTA+AGG | 0.490938 | 6_4:+65899322 | None:intergenic |
| GAGGGACGTAATTCTCTTCA+AGG | 0.503143 | 6_4:+65896520 | None:intergenic |
| ACCAGCAGAATAAATCCAAC+TGG | 0.505118 | 6_4:+65897671 | None:intergenic |
| AAGGTGCAGTATCTCATGTC+AGG | 0.508895 | 6_4:+65896629 | None:intergenic |
| TTGTTGTTGTTGGGTTGTGT+TGG | 0.508963 | 6_4:+65900895 | None:intergenic |
| TTACCTTGGTAAATTTCTCA+AGG | 0.516569 | 6_4:-65899320 | Msa0993390:intron |
| ATATTGTTAGGGTGCTCAAC+CGG | 0.520224 | 6_4:-65898684 | Msa0993390:intron |
| TTTATAAAAGTAGATTGAAG+TGG | 0.530625 | 6_4:-65896800 | Msa0993390:three_prime_UTR |
| TTCACTTTCTAATACAGAAG+AGG | 0.531642 | 6_4:+65896453 | None:intergenic |
| CATGTGACATACCGCAGCTA+TGG | 0.538449 | 6_4:+65898541 | None:intergenic |
| TTCTCACAACTTTCCTCCGA+GGG | 0.541210 | 6_4:+65896502 | None:intergenic |
| GTTGTGTTGGTGGAATTGGG+TGG | 0.543255 | 6_4:+65900908 | None:intergenic |
| GCAGTATCTCATGTCAGGAT+TGG | 0.545120 | 6_4:+65896634 | None:intergenic |
| AATTCTCTTCAAGGCACAAT+CGG | 0.551718 | 6_4:+65896529 | None:intergenic |
| TCAATTGTACTGCCTTACCT+TGG | 0.552367 | 6_4:-65899334 | Msa0993390:CDS |
| ATATATAGCGGACGGTCTGA+AGG | 0.554496 | 6_4:-65898609 | Msa0993390:CDS |
| TTGAAGAGAATTACGTCCCT+CGG | 0.562265 | 6_4:-65896518 | Msa0993390:three_prime_UTR |
| TCATCATTACCTGCATCTTG+TGG | 0.569655 | 6_4:+65898202 | None:intergenic |
| AATGCTAAATGCATATCTCA+TGG | 0.577761 | 6_4:+65897643 | None:intergenic |
| GTAAGGCAGTACAATTGAGA+AGG | 0.580325 | 6_4:+65899339 | None:intergenic |
| TTGTTGTTACGAGGAATCCA+AGG | 0.589798 | 6_4:+65900995 | None:intergenic |
| GATGATAAGGTTCTAACGAA+AGG | 0.592302 | 6_4:-65896759 | Msa0993390:three_prime_UTR |
| TTGTTATATGTAGAGAACAG+AGG | 0.594161 | 6_4:-65899383 | Msa0993390:intron |
| TTCAAGGAGATATATGCGCA+AGG | 0.594214 | 6_4:-65898333 | Msa0993390:CDS |
| GGGTGTCTTTCAAATCATTG+AGG | 0.600639 | 6_4:+65898233 | None:intergenic |
| TCAAGGAGATATATGCGCAA+GGG | 0.612052 | 6_4:-65898332 | Msa0993390:CDS |
| CAAGGAGATATATGCGCAAG+GGG | 0.620624 | 6_4:-65898331 | Msa0993390:CDS |
| AAAACAACGTTGTTGTTACG+AGG | 0.622228 | 6_4:+65900986 | None:intergenic |
| AGGTTTCGAAGATATTGTTG+TGG | 0.625862 | 6_4:+65901015 | None:intergenic |
| TAATACAAACGCCATAGCTG+CGG | 0.626421 | 6_4:-65898552 | Msa0993390:intron |
| TTTCTCACAACTTTCCTCCG+AGG | 0.628696 | 6_4:+65896501 | None:intergenic |
| TTGTTAGGGTGCTCAACCGG+TGG | 0.631914 | 6_4:-65898681 | Msa0993390:intron |
| TTACCTTGAGAAATTTACCA+AGG | 0.635163 | 6_4:+65899317 | None:intergenic |
| TTCCAATCATGATATAACAA+AGG | 0.636204 | 6_4:+65896610 | None:intergenic |
| ATGTCAACATATATAGCGGA+CGG | 0.658236 | 6_4:-65898617 | Msa0993390:CDS |
| AAGTAAGATTCATCAAAACC+AGG | 0.662494 | 6_4:+65900676 | None:intergenic |
| TGTCATGTCAACATATATAG+CGG | 0.669694 | 6_4:-65898621 | Msa0993390:CDS |
| AGCTAGGCTTATAAACACGA+AGG | 0.676220 | 6_4:+65896833 | None:intergenic |
| AAGAGAATTACGTCCCTCGG+AGG | 0.705425 | 6_4:-65896515 | Msa0993390:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAATTGAATAAGAAA+GGG | + | chr6_4:65896843-65896862 | None:intergenic | 10.0% |
| !!! | TCATTTTTTCAAATTATTAT+CGG | + | chr6_4:65898397-65898416 | None:intergenic | 10.0% |
| !! | TATAATATTAATACGTAATA+TGG | - | chr6_4:65899216-65899235 | Msa0993390:intron | 10.0% |
| !! | AATTATTGTATAGTTTATTA+TGG | + | chr6_4:65899453-65899472 | None:intergenic | 10.0% |
| !! | ATAAAATAATATGTAACAAA+CGG | + | chr6_4:65899881-65899900 | None:intergenic | 10.0% |
| !!! | GTTTTTTTATTGTATTCATT+TGG | - | chr6_4:65896656-65896675 | Msa0993390:intron | 15.0% |
| !! | CATATTTAATTGAATAAGAA+AGG | + | chr6_4:65896844-65896863 | None:intergenic | 15.0% |
| !!! | GTTTGCTAAATTTAAAATAA+CGG | - | chr6_4:65897012-65897031 | Msa0993390:intron | 15.0% |
| !!! | TTTTTTTATATTCTTTCCAA+TGG | + | chr6_4:65897086-65897105 | None:intergenic | 15.0% |
| !!! | GTTTAGTTTTTTTTTTTGTT+TGG | - | chr6_4:65897210-65897229 | Msa0993390:intron | 15.0% |
| !! | AAACATTTACAATAATCTAA+TGG | - | chr6_4:65897278-65897297 | Msa0993390:intron | 15.0% |
| !!! | AATTGATATTTTCATTTCTA+AGG | - | chr6_4:65897855-65897874 | Msa0993390:intron | 15.0% |
| !! | ACTTGTAAAAAAACTAATTT+GGG | + | chr6_4:65898590-65898609 | None:intergenic | 15.0% |
| !!! | TTAATTTTCCTTTTAGAATA+CGG | - | chr6_4:65898625-65898644 | Msa0993390:CDS | 15.0% |
| !! | TAAAATAATATGTAACAAAC+GGG | + | chr6_4:65899880-65899899 | None:intergenic | 15.0% |
| !!! | CTTATCTTAAATCATTTTCT+TGG | - | chr6_4:65896767-65896786 | Msa0993390:three_prime_UTR | 20.0% |
| !!! | GTTTTTTTTTTTGTTTGGTT+TGG | - | chr6_4:65897215-65897234 | Msa0993390:intron | 20.0% |
| !! | GAAAGAAATGTATACAATAT+TGG | + | chr6_4:65898101-65898120 | None:intergenic | 20.0% |
| !! | AAAAAATATCACAACTGATA+TGG | + | chr6_4:65898309-65898328 | None:intergenic | 20.0% |
| !! | GACTTGTAAAAAAACTAATT+TGG | + | chr6_4:65898591-65898610 | None:intergenic | 20.0% |
| !!! | GTATTCTAAAAGGAAAATTA+AGG | + | chr6_4:65898626-65898645 | None:intergenic | 20.0% |
| !! | TATTAATTTAAACAAACCCA+TGG | - | chr6_4:65898897-65898916 | Msa0993390:intron | 20.0% |
| !! | AACTAGAAAAGAAGAAAAAA+TGG | - | chr6_4:65898945-65898964 | Msa0993390:intron | 20.0% |
| !! | ATTGAAATTGTTCGAAAATA+AGG | + | chr6_4:65899015-65899034 | None:intergenic | 20.0% |
| !! | TTAACATAATTTCCAAAAAC+TGG | + | chr6_4:65899396-65899415 | None:intergenic | 20.0% |
| !!! | AAAAAAATCAGTTTTTAGTG+TGG | - | chr6_4:65900005-65900024 | Msa0993390:intron | 20.0% |
| !! | ATAAGAGATAAGATTGTAAA+GGG | - | chr6_4:65900031-65900050 | Msa0993390:intron | 20.0% |
| !! | CATTTCTGTTTGTTTATATT+AGG | + | chr6_4:65900063-65900082 | None:intergenic | 20.0% |
| !! | ATTTAACTGTTTCAAATTGA+TGG | - | chr6_4:65900170-65900189 | Msa0993390:intron | 20.0% |
| !! | AAATGTATCTCAAAATTTCA+TGG | + | chr6_4:65900293-65900312 | None:intergenic | 20.0% |
| !!! | AAATTTTGAGATACATTTAG+AGG | - | chr6_4:65900295-65900314 | Msa0993390:intron | 20.0% |
| !! | TATAAAATTGAATTGAAGCT+AGG | + | chr6_4:65900572-65900591 | None:intergenic | 20.0% |
| !! | TTTATAAAAGTAGATTGAAG+TGG | - | chr6_4:65900586-65900605 | Msa0993390:CDS | 20.0% |
| !! | AGTATATCAGAATGATATAA+TGG | - | chr6_4:65900664-65900683 | Msa0993390:CDS | 20.0% |
| !!! | ATTAGAAAGTGAATTTTTGA+AGG | - | chr6_4:65900943-65900962 | Msa0993390:CDS | 20.0% |
| !!! | TATTGTTGTTGTAGATTTTG+TGG | + | chr6_4:65896440-65896459 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTGTTTGATTTC+AGG | - | chr6_4:65896683-65896702 | Msa0993390:intron | 25.0% |
| !!! | GTGTTTTTTGTTTGATTTCA+GGG | - | chr6_4:65896684-65896703 | Msa0993390:intron | 25.0% |
| !! | TCTAAAGTTTCACATATGAA+TGG | + | chr6_4:65896937-65896956 | None:intergenic | 25.0% |
| ! | TGTGAAACTTTAGATGTATA+TGG | - | chr6_4:65896943-65896962 | Msa0993390:intron | 25.0% |
| ! | GTGAAACTTTAGATGTATAT+GGG | - | chr6_4:65896944-65896963 | Msa0993390:intron | 25.0% |
| ! | AGTTTCAGAATTGTTAGTAA+TGG | - | chr6_4:65897167-65897186 | Msa0993390:intron | 25.0% |
| !!! | TTTGGTTCTGTTTTTTTGTA+AGG | - | chr6_4:65897233-65897252 | Msa0993390:intron | 25.0% |
| ! | AAATGTGTGCTATAAAGATT+AGG | - | chr6_4:65897519-65897538 | Msa0993390:intron | 25.0% |
| !! | TGCAATTTAAAACCTTGTAT+TGG | + | chr6_4:65897760-65897779 | None:intergenic | 25.0% |
| !!! | TATTTTCATTTCTAAGGTCT+CGG | - | chr6_4:65897861-65897880 | Msa0993390:intron | 25.0% |
| !! | ATTTTTGTTAGGGACTAATT+TGG | - | chr6_4:65897886-65897905 | Msa0993390:intron | 25.0% |
| !! | TTTTTGTTAGGGACTAATTT+GGG | - | chr6_4:65897887-65897906 | Msa0993390:intron | 25.0% |
| !! | AACCTTTATATGTTTTTCTG+TGG | - | chr6_4:65897955-65897974 | Msa0993390:intron | 25.0% |
| ! | TAAGACTTGATAGATATGTT+TGG | - | chr6_4:65898147-65898166 | Msa0993390:intron | 25.0% |
| ! | CTATGATTAAAGAGAAAATG+TGG | - | chr6_4:65898272-65898291 | Msa0993390:CDS | 25.0% |
| ! | ACATAGCTTAAAACAACTTA+TGG | - | chr6_4:65898497-65898516 | Msa0993390:intron | 25.0% |
| ! | GAAAAGAAGAAAAAATGGTA+TGG | - | chr6_4:65898950-65898969 | Msa0993390:intron | 25.0% |
| ! | AATTTCTTTCGATGAATCAT+TGG | + | chr6_4:65899095-65899114 | None:intergenic | 25.0% |
| ! | AGGAAAAAAATTGAAAATGC+TGG | - | chr6_4:65899130-65899149 | Msa0993390:intron | 25.0% |
| !!! | TTTGTACAGTTTTGTCAAAT+AGG | - | chr6_4:65899253-65899272 | Msa0993390:intron | 25.0% |
| !!! | TTGTACAGTTTTGTCAAATA+GGG | - | chr6_4:65899254-65899273 | Msa0993390:intron | 25.0% |
| !! | TTGCTGTTGAAAATATGATT+AGG | + | chr6_4:65899484-65899503 | None:intergenic | 25.0% |
| ! | TCGATAGAAACTTGTAATAT+TGG | + | chr6_4:65899673-65899692 | None:intergenic | 25.0% |
| ! | TTTAACCAGATTAATGTAGA+AGG | + | chr6_4:65899941-65899960 | None:intergenic | 25.0% |
| ! | GATAAGAGATAAGATTGTAA+AGG | - | chr6_4:65900030-65900049 | Msa0993390:intron | 25.0% |
| ! | TAGAGATAAAATAATGAAGC+AGG | + | chr6_4:65900090-65900109 | None:intergenic | 25.0% |
| ! | GCATCTCAAATTTGAAAAAT+CGG | - | chr6_4:65900195-65900214 | Msa0993390:intron | 25.0% |
| ! | AATTTAAACCAAATCTAGCT+TGG | - | chr6_4:65900225-65900244 | Msa0993390:intron | 25.0% |
| ! | ATGAAAAATGATGCAGATTA+AGG | + | chr6_4:65900258-65900277 | None:intergenic | 25.0% |
| ! | TTGCTAATATATGACGAAAA+CGG | + | chr6_4:65900439-65900458 | None:intergenic | 25.0% |
| ! | TTTCGTCATATATTAGCAAA+AGG | - | chr6_4:65900440-65900459 | Msa0993390:intron | 25.0% |
| ! | AAAAATTGCAGAAGTTTGAA+AGG | + | chr6_4:65900511-65900530 | None:intergenic | 25.0% |
| ! | TCAGAATTTATAAAACCTTG+AGG | - | chr6_4:65900699-65900718 | Msa0993390:intron | 25.0% |
| ! | TTCCAATCATGATATAACAA+AGG | + | chr6_4:65900779-65900798 | None:intergenic | 25.0% |
| ! | AAGATACAGTTAAGAAAAAG+TGG | - | chr6_4:65900810-65900829 | Msa0993390:intron | 25.0% |
| ! | AGTTGTGAGAAACAAAAAAA+TGG | - | chr6_4:65900896-65900915 | Msa0993390:CDS | 25.0% |
| ! | GAAACAAAAAAATGGATATC+AGG | - | chr6_4:65900904-65900923 | Msa0993390:CDS | 25.0% |
| ! | TTATTTGAACCACAAATTTC+TGG | + | chr6_4:65901015-65901034 | None:intergenic | 25.0% |
| ! | TTCATCTCTTCTTTTCTTTC+TGG | + | chr6_4:65896343-65896362 | None:intergenic | 30.0% |
| ! | GATTTTGTGGAACATGTTTT+GGG | + | chr6_4:65896427-65896446 | None:intergenic | 30.0% |
| ! | AGATTTTGTGGAACATGTTT+TGG | + | chr6_4:65896428-65896447 | None:intergenic | 30.0% |
| ! | TTGTTGTTGTTGTTGTTGTT+GGG | + | chr6_4:65896503-65896522 | None:intergenic | 30.0% |
| AAGTAAGATTCATCAAAACC+AGG | + | chr6_4:65896713-65896732 | None:intergenic | 30.0% | |
| ATGAATCTTACTTACCTAGA+TGG | - | chr6_4:65896720-65896739 | Msa0993390:intron | 30.0% | |
| AGTTCGAAATGCAAACAATT+TGG | + | chr6_4:65897040-65897059 | None:intergenic | 30.0% | |
| CTGAACTGAACTGTTAATAT+TGG | - | chr6_4:65897058-65897077 | Msa0993390:intron | 30.0% | |
| ACTGTTAATATTGGTACCAT+TGG | - | chr6_4:65897067-65897086 | Msa0993390:intron | 30.0% | |
| GGTTTCAGAATTGTTAGTAA+TGG | - | chr6_4:65897188-65897207 | Msa0993390:intron | 30.0% | |
| !! | TTTTAGAGACAAATTGTCAG+TGG | - | chr6_4:65897395-65897414 | Msa0993390:intron | 30.0% |
| TGCAAATCTCATCAATGTTA+AGG | + | chr6_4:65897789-65897808 | None:intergenic | 30.0% | |
| CCTTAAGAAATCCAACAAAA+AGG | + | chr6_4:65897831-65897850 | None:intergenic | 30.0% | |
| ! | CCTTTTTGTTGGATTTCTTA+AGG | - | chr6_4:65897828-65897847 | Msa0993390:intron | 30.0% |
| CACCACAGAAAAACATATAA+AGG | + | chr6_4:65897960-65897979 | None:intergenic | 30.0% | |
| TTGTTATATGTAGAGAACAG+AGG | - | chr6_4:65898003-65898022 | Msa0993390:intron | 30.0% | |
| TTGAGAAATTTACCAAGGTA+AGG | + | chr6_4:65898067-65898086 | None:intergenic | 30.0% | |
| TTACCTTGGTAAATTTCTCA+AGG | - | chr6_4:65898066-65898085 | Msa0993390:intron | 30.0% | |
| TTACCTTGAGAAATTTACCA+AGG | + | chr6_4:65898072-65898091 | None:intergenic | 30.0% | |
| CTTATTTCAATGAACTCTCT+AGG | + | chr6_4:65898344-65898363 | None:intergenic | 30.0% | |
| !! | AATATTTGTTGTGCTTCATC+TGG | + | chr6_4:65898745-65898764 | None:intergenic | 30.0% |
| TGTCATGTCAACATATATAG+CGG | - | chr6_4:65898765-65898784 | Msa0993390:intron | 30.0% | |
| !! | GTTCAGCTCATTTTTATTCA+AGG | - | chr6_4:65899037-65899056 | Msa0993390:intron | 30.0% |
| TTCATCGAAAGAAATTCTTC+TGG | - | chr6_4:65899099-65899118 | Msa0993390:intron | 30.0% | |
| !! | AAATTCTTCTGGAACAGTTT+AGG | - | chr6_4:65899110-65899129 | Msa0993390:intron | 30.0% |
| TGCATCTTGTGGAAAATATA+GGG | + | chr6_4:65899176-65899195 | None:intergenic | 30.0% | |
| !! | TGTACAGTTTTGTCAAATAG+GGG | - | chr6_4:65899255-65899274 | Msa0993390:intron | 30.0% |
| TTCAACCTGTTCAAATAATG+TGG | - | chr6_4:65899574-65899593 | Msa0993390:intron | 30.0% | |
| ACATTCCACATTATTTGAAC+AGG | + | chr6_4:65899582-65899601 | None:intergenic | 30.0% | |
| TGTTTCAGATTCTGAATTTC+AGG | - | chr6_4:65899609-65899628 | Msa0993390:intron | 30.0% | |
| AATGCTAAATGCATATCTCA+TGG | + | chr6_4:65899746-65899765 | None:intergenic | 30.0% | |
| TTAAGCCTTCTACATTAATC+TGG | - | chr6_4:65899933-65899952 | Msa0993390:intron | 30.0% | |
| CAAAATTTCATGGAAATTCG+TGG | + | chr6_4:65900283-65900302 | None:intergenic | 30.0% | |
| AAAGAGGATATAGTGTAACA+TGG | + | chr6_4:65900403-65900422 | None:intergenic | 30.0% | |
| TGCTAATATATGACGAAAAC+GGG | + | chr6_4:65900438-65900457 | None:intergenic | 30.0% | |
| ! | GTTTGAAAGGTATAAACGAA+TGG | + | chr6_4:65900498-65900517 | None:intergenic | 30.0% |
| ! | TATTTTCTGCAACGATGATA+AGG | - | chr6_4:65900614-65900633 | Msa0993390:CDS | 30.0% |
| ! | CACCTTTGTTATATCATGAT+TGG | - | chr6_4:65900774-65900793 | Msa0993390:intron | 30.0% |
| GTTAAGAAAAAGTGGAATCT+AGG | - | chr6_4:65900818-65900837 | Msa0993390:intron | 30.0% | |
| TTCACTTTCTAATACAGAAG+AGG | + | chr6_4:65900936-65900955 | None:intergenic | 30.0% | |
| !! | GTTTAGTTTGATGCTTCAAA+AGG | + | chr6_4:65901050-65901069 | None:intergenic | 30.0% |
| AGGTTTCGAAGATATTGTTG+TGG | + | chr6_4:65896374-65896393 | None:intergenic | 35.0% | |
| CAACAATATCTTCGAAACCT+TGG | - | chr6_4:65896374-65896393 | Msa0993390:three_prime_UTR | 35.0% | |
| ! | AAAACAACGTTGTTGTTACG+AGG | + | chr6_4:65896403-65896422 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGTTGTTGTTGT+TGG | + | chr6_4:65896504-65896523 | None:intergenic | 35.0% |
| TCTTACTTACCTAGATGGAT+TGG | - | chr6_4:65896725-65896744 | Msa0993390:intron | 35.0% | |
| AATGCATAACCAATCCATCT+AGG | + | chr6_4:65896737-65896756 | None:intergenic | 35.0% | |
| !! | AGATGGATTGGTTATGCATT+TGG | - | chr6_4:65896737-65896756 | Msa0993390:three_prime_UTR | 35.0% |
| ACTTTAGATGTATATGGGCA+TGG | - | chr6_4:65896949-65896968 | Msa0993390:intron | 35.0% | |
| ATTTAGCAAACAGTCCAGTT+CGG | + | chr6_4:65897003-65897022 | None:intergenic | 35.0% | |
| GAAACTGAACTGAAACAGTT+CGG | + | chr6_4:65897153-65897172 | None:intergenic | 35.0% | |
| !!! | GGTTCTGTTTTTTTGTAAGG+CGG | - | chr6_4:65897236-65897255 | Msa0993390:intron | 35.0% |
| !! | TGTCAGTGGTTAACTTGTTA+AGG | - | chr6_4:65897409-65897428 | Msa0993390:intron | 35.0% |
| !! | GTCAGTGGTTAACTTGTTAA+GGG | - | chr6_4:65897410-65897429 | Msa0993390:intron | 35.0% |
| !! | TCAGTGGTTAACTTGTTAAG+GGG | - | chr6_4:65897411-65897430 | Msa0993390:intron | 35.0% |
| TCGAAATAACAGTACTTGTG+TGG | + | chr6_4:65897553-65897572 | None:intergenic | 35.0% | |
| AGTCAATCGCGAAAAAATAG+CGG | + | chr6_4:65897734-65897753 | None:intergenic | 35.0% | |
| ! | GACGAGAAAAACCTTTTTGT+TGG | - | chr6_4:65897817-65897836 | Msa0993390:intron | 35.0% |
| ! | AGGTCTCGGTAATTTTTGTT+AGG | - | chr6_4:65897875-65897894 | Msa0993390:intron | 35.0% |
| ! | GGTCTCGGTAATTTTTGTTA+GGG | - | chr6_4:65897876-65897895 | Msa0993390:intron | 35.0% |
| ! | TATGTAGAGAACAGAGGTTT+TGG | - | chr6_4:65898009-65898028 | Msa0993390:intron | 35.0% |
| ! | ATGTAGAGAACAGAGGTTTT+GGG | - | chr6_4:65898010-65898029 | Msa0993390:intron | 35.0% |
| GGAGCTTTCATAATTCAACA+AGG | - | chr6_4:65898168-65898187 | Msa0993390:intron | 35.0% | |
| ! | GTCAGTGTTTCATAGGTTTT+CGG | + | chr6_4:65898367-65898386 | None:intergenic | 35.0% |
| TCTCAGATGTTGATACATGT+TGG | - | chr6_4:65898445-65898464 | Msa0993390:intron | 35.0% | |
| TTTGAGCTCCGTATTCTAAA+AGG | + | chr6_4:65898636-65898655 | None:intergenic | 35.0% | |
| AGCCATGTCTGAATATTGTT+AGG | - | chr6_4:65898690-65898709 | Msa0993390:intron | 35.0% | |
| GCCATGTCTGAATATTGTTA+GGG | - | chr6_4:65898691-65898710 | Msa0993390:intron | 35.0% | |
| ACCCTAACAATATTCAGACA+TGG | + | chr6_4:65898695-65898714 | None:intergenic | 35.0% | |
| ! | ATGTCAACATATATAGCGGA+CGG | - | chr6_4:65898769-65898788 | Msa0993390:intron | 35.0% |
| AATTTAAACAAACCCATGGC+TGG | - | chr6_4:65898901-65898920 | Msa0993390:intron | 35.0% | |
| TATAGAAATCAACCAGCCAT+GGG | + | chr6_4:65898916-65898935 | None:intergenic | 35.0% | |
| CTGCATCTTGTGGAAAATAT+AGG | + | chr6_4:65899177-65899196 | None:intergenic | 35.0% | |
| ! | CTATATTTTCCACAAGATGC+AGG | - | chr6_4:65899175-65899194 | Msa0993390:intron | 35.0% |
| CGTAATATGGAAGTTGCATA+TGG | - | chr6_4:65899229-65899248 | Msa0993390:intron | 35.0% | |
| !! | GTACAGTTTTGTCAAATAGG+GGG | - | chr6_4:65899256-65899275 | Msa0993390:intron | 35.0% |
| TACGAAGTGTAGTCAAATAG+TGG | - | chr6_4:65899341-65899360 | Msa0993390:CDS | 35.0% | |
| ! | AGCATAACTTGACCAGTTTT+TGG | - | chr6_4:65899381-65899400 | Msa0993390:intron | 35.0% |
| TTTCAGGAACTTGTACCTAA+TGG | - | chr6_4:65899625-65899644 | Msa0993390:intron | 35.0% | |
| TTCAGGAACTTGTACCTAAT+GGG | - | chr6_4:65899626-65899645 | Msa0993390:intron | 35.0% | |
| !!! | AACTGGTTTTTGTGAATCAG+TGG | + | chr6_4:65899701-65899720 | None:intergenic | 35.0% |
| ! | ACTGATTCACAAAAACCAGT+TGG | - | chr6_4:65899700-65899719 | Msa0993390:intron | 35.0% |
| GGTAGTAAGTAACAGCTAAA+CGG | + | chr6_4:65900376-65900395 | None:intergenic | 35.0% | |
| GATATAGTGTAACATGGACT+AGG | + | chr6_4:65900397-65900416 | None:intergenic | 35.0% | |
| !! | CTTCTGCAATTTTTGTTTGC+AGG | - | chr6_4:65900517-65900536 | Msa0993390:intron | 35.0% |
| ! | GATGATAAGGTTCTAACGAA+AGG | - | chr6_4:65900627-65900646 | Msa0993390:CDS | 35.0% |
| AATTCTCTTCAAGGCACAAT+CGG | + | chr6_4:65900860-65900879 | None:intergenic | 35.0% | |
| AACCTTGATCCAGAAATTTG+TGG | - | chr6_4:65901003-65901022 | Msa0993390:CDS | 35.0% | |
| ! | AACCACAAATTTCTGGATCA+AGG | + | chr6_4:65901008-65901027 | None:intergenic | 35.0% |
| ! | TTGTTGTTACGAGGAATCCA+AGG | + | chr6_4:65896394-65896413 | None:intergenic | 40.0% |
| ! | TTGTTGTTGTTGGGTTGTGT+TGG | + | chr6_4:65896494-65896513 | None:intergenic | 40.0% |
| TCTGTTCTTCGCTTCACATT+AGG | - | chr6_4:65896538-65896557 | Msa0993390:three_prime_UTR | 40.0% | |
| ! | TGTTTGATTTCAGGGATACC+TGG | - | chr6_4:65896692-65896711 | Msa0993390:intron | 40.0% |
| AGATGTATATGGGCATGGTT+CGG | - | chr6_4:65896954-65896973 | Msa0993390:intron | 40.0% | |
| CGGTTCAGTTCAAAACAGTT+CGG | + | chr6_4:65897133-65897152 | None:intergenic | 40.0% | |
| !! | TGAGAGAATTTGTTAGCAGC+AGG | - | chr6_4:65897434-65897453 | Msa0993390:intron | 40.0% |
| !! | GAGAGAATTTGTTAGCAGCA+GGG | - | chr6_4:65897435-65897454 | Msa0993390:intron | 40.0% |
| ATGTGTTAGGAAGCTTAAGG+AGG | + | chr6_4:65897476-65897495 | None:intergenic | 40.0% | |
| GGAATGTGTTAGGAAGCTTA+AGG | + | chr6_4:65897479-65897498 | None:intergenic | 40.0% | |
| CGATTGACTACACCAATACA+AGG | - | chr6_4:65897745-65897764 | Msa0993390:CDS | 40.0% | |
| GTAAGGCAGTACAATTGAGA+AGG | + | chr6_4:65898050-65898069 | None:intergenic | 40.0% | |
| TCAATTGTACTGCCTTACCT+TGG | - | chr6_4:65898052-65898071 | Msa0993390:intron | 40.0% | |
| TGTCTACGTCAGTGTTTCAT+AGG | + | chr6_4:65898374-65898393 | None:intergenic | 40.0% | |
| GCACTCTAACTTCAAAACGA+TGG | + | chr6_4:65898476-65898495 | None:intergenic | 40.0% | |
| ACAATATTCAGACATGGCTG+AGG | + | chr6_4:65898689-65898708 | None:intergenic | 40.0% | |
| ! | ATATTGTTAGGGTGCTCAAC+CGG | - | chr6_4:65898702-65898721 | Msa0993390:intron | 40.0% |
| GGTATAGTTGTTTGTTCCAC+CGG | + | chr6_4:65898724-65898743 | None:intergenic | 40.0% | |
| TAATACAAACGCCATAGCTG+CGG | - | chr6_4:65898834-65898853 | Msa0993390:intron | 40.0% | |
| CTATAGAAATCAACCAGCCA+TGG | + | chr6_4:65898917-65898936 | None:intergenic | 40.0% | |
| TTCAAGGAGATATATGCGCA+AGG | - | chr6_4:65899053-65899072 | Msa0993390:intron | 40.0% | |
| TCAAGGAGATATATGCGCAA+GGG | - | chr6_4:65899054-65899073 | Msa0993390:intron | 40.0% | |
| GGGTGTCTTTCAAATCATTG+AGG | + | chr6_4:65899156-65899175 | None:intergenic | 40.0% | |
| TCATCATTACCTGCATCTTG+TGG | + | chr6_4:65899187-65899206 | None:intergenic | 40.0% | |
| ACCAGTTGGATTTATTCTGC+TGG | - | chr6_4:65899714-65899733 | Msa0993390:intron | 40.0% | |
| ACCAGCAGAATAAATCCAAC+TGG | + | chr6_4:65899718-65899737 | None:intergenic | 40.0% | |
| TTAGCATTAAAGACAGAGCC+TGG | - | chr6_4:65899758-65899777 | Msa0993390:intron | 40.0% | |
| GCTATTACCTCTAAGCTTGT+TGG | + | chr6_4:65899797-65899816 | None:intergenic | 40.0% | |
| CGGGAAAATGAGTAACAAAG+AGG | + | chr6_4:65900419-65900438 | None:intergenic | 40.0% | |
| CGAATGGTTAAAGAGACGAA+GGG | + | chr6_4:65900482-65900501 | None:intergenic | 40.0% | |
| ACGAATGGTTAAAGAGACGA+AGG | + | chr6_4:65900483-65900502 | None:intergenic | 40.0% | |
| !! | TTTTTGTTTGCAGGCTGATG+TGG | - | chr6_4:65900526-65900545 | Msa0993390:intron | 40.0% |
| AGCTAGGCTTATAAACACGA+AGG | + | chr6_4:65900556-65900575 | None:intergenic | 40.0% | |
| CAGAAACATTCTACACCTCA+AGG | + | chr6_4:65900717-65900736 | None:intergenic | 40.0% | |
| ! | GAGGTGTAGAATGTTTCTGA+TGG | - | chr6_4:65900718-65900737 | Msa0993390:intron | 40.0% |
| TTGAAGAGAATTACGTCCCT+CGG | - | chr6_4:65900868-65900887 | Msa0993390:CDS | 40.0% | |
| ! | TGGGTTGTGTTGGTGGAATT+GGG | + | chr6_4:65896484-65896503 | None:intergenic | 45.0% |
| ! | TTGGGTTGTGTTGGTGGAAT+TGG | + | chr6_4:65896485-65896504 | None:intergenic | 45.0% |
| ! | TTGTTGTTGGGTTGTGTTGG+TGG | + | chr6_4:65896491-65896510 | None:intergenic | 45.0% |
| AAAACTGAACCGAACCGAAC+TGG | - | chr6_4:65896986-65897005 | Msa0993390:intron | 45.0% | |
| TGTTAGGAAGCTTAAGGAGG+AGG | + | chr6_4:65897473-65897492 | None:intergenic | 45.0% | |
| AGCTTCCTAACACATTCCAC+TGG | - | chr6_4:65897481-65897500 | Msa0993390:intron | 45.0% | |
| GCTTCCTAACACATTCCACT+GGG | - | chr6_4:65897482-65897501 | Msa0993390:intron | 45.0% | |
| GTAACCCAGTGGAATGTGTT+AGG | + | chr6_4:65897489-65897508 | None:intergenic | 45.0% | |
| ATTCCACTGGGTTACACCTT+CGG | - | chr6_4:65897494-65897513 | Msa0993390:intron | 45.0% | |
| TATAGCACACATTTCCCCGA+AGG | + | chr6_4:65897513-65897532 | None:intergenic | 45.0% | |
| AGCGTCACTATAGCTGCTAT+TGG | + | chr6_4:65897680-65897699 | None:intergenic | 45.0% | |
| GCTATAGTACTATAGCACGC+TGG | - | chr6_4:65897697-65897716 | Msa0993390:CDS | 45.0% | |
| !!! | AGAGGTTTTGGGTCTGTCTT+TGG | - | chr6_4:65898021-65898040 | Msa0993390:intron | 45.0% |
| GTGAATGTAGCCACATGTGT+CGG | - | chr6_4:65898422-65898441 | Msa0993390:intron | 45.0% | |
| !! | ATATATAGCGGACGGTCTGA+AGG | - | chr6_4:65898777-65898796 | Msa0993390:intron | 45.0% |
| CAAGGAGATATATGCGCAAG+GGG | - | chr6_4:65899055-65899074 | Msa0993390:intron | 45.0% | |
| AGAAGAGAACGAGTCCCATT+AGG | + | chr6_4:65899643-65899662 | None:intergenic | 45.0% | |
| TAATGGGACTCGTTCTCTTC+TGG | - | chr6_4:65899642-65899661 | Msa0993390:intron | 45.0% | |
| GTTGTGCTCCAAGCTAGATT+TGG | + | chr6_4:65900236-65900255 | None:intergenic | 45.0% | |
| GACGAAGGGTAGTTATATCG+TGG | + | chr6_4:65900468-65900487 | None:intergenic | 45.0% | |
| GCAGTATCTCATGTCAGGAT+TGG | + | chr6_4:65900755-65900774 | None:intergenic | 45.0% | |
| AAGGTGCAGTATCTCATGTC+AGG | + | chr6_4:65900760-65900779 | None:intergenic | 45.0% | |
| GAGGGACGTAATTCTCTTCA+AGG | + | chr6_4:65900869-65900888 | None:intergenic | 45.0% | |
| TTCTCACAACTTTCCTCCGA+GGG | + | chr6_4:65900887-65900906 | None:intergenic | 45.0% | |
| TTTCTCACAACTTTCCTCCG+AGG | + | chr6_4:65900888-65900907 | None:intergenic | 45.0% | |
| ! | GTTGTGTTGGTGGAATTGGG+TGG | + | chr6_4:65896481-65896500 | None:intergenic | 50.0% |
| !! | ATATGGGCATGGTTCGGTTC+AGG | - | chr6_4:65896960-65896979 | Msa0993390:intron | 50.0% |
| GCAAACAGTCCAGTTCGGTT+CGG | + | chr6_4:65896998-65897017 | None:intergenic | 50.0% | |
| TTCCACTGGGTTACACCTTC+GGG | - | chr6_4:65897495-65897514 | Msa0993390:intron | 50.0% | |
| ! | ACATCTGAGACCGACACATG+TGG | + | chr6_4:65898435-65898454 | None:intergenic | 50.0% |
| GTCTGAAGGAAGATCTGGCT+TGG | - | chr6_4:65898791-65898810 | Msa0993390:intron | 50.0% | |
| CATGTGACATACCGCAGCTA+TGG | + | chr6_4:65898848-65898867 | None:intergenic | 50.0% | |
| CATAGCTGCGGTATGTCACA+TGG | - | chr6_4:65898846-65898865 | Msa0993390:intron | 50.0% | |
| ATATATGCGCAAGGGGCTAC+TGG | - | chr6_4:65899062-65899081 | Msa0993390:intron | 50.0% | |
| GCTGTTGCCAACAAGCTTAG+AGG | - | chr6_4:65899787-65899806 | Msa0993390:intron | 50.0% | |
| AAGAGAATTACGTCCCTCGG+AGG | - | chr6_4:65900871-65900890 | Msa0993390:CDS | 50.0% | |
| TTAGCAGCAGGGATAGAGCC+CGG | - | chr6_4:65897446-65897465 | Msa0993390:intron | 55.0% | |
| GAAGCTTAAGGAGGAGGTCC+GGG | + | chr6_4:65897467-65897486 | None:intergenic | 55.0% | |
| GGAAGCTTAAGGAGGAGGTC+CGG | + | chr6_4:65897468-65897487 | None:intergenic | 55.0% | |
| TCCACTGGGTTACACCTTCG+GGG | - | chr6_4:65897496-65897515 | Msa0993390:intron | 55.0% | |
| ! | TTGTTAGGGTGCTCAACCGG+TGG | - | chr6_4:65898705-65898724 | Msa0993390:intron | 55.0% |
| GGACGGTCTGAAGGAAGATC+TGG | - | chr6_4:65898786-65898805 | Msa0993390:intron | 55.0% | |
| GTTGGCAACAGCTGCAATCC+AGG | + | chr6_4:65899779-65899798 | None:intergenic | 55.0% | |
| ! | TCCCCGAAGGTGTAACCCAG+TGG | + | chr6_4:65897500-65897519 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 65896329 | 65901079 | 65896329 | ID=Msa0993390;Name=Msa0993390 |
| chr6_4 | mRNA | 65896329 | 65901079 | 65896329 | ID=Msa0993390-mRNA-1;Parent=Msa0993390;Name=Msa0993390-mRNA-1;_AED=0.22;_eAED=0.22;_QI=29|1|1|1|0.71|0.75|8|472|295 |
| chr6_4 | exon | 65896329 | 65896671 | 65896329 | ID=Msa0993390-mRNA-1:exon:12324;Parent=Msa0993390-mRNA-1 |
| chr6_4 | exon | 65896736 | 65896869 | 65896736 | ID=Msa0993390-mRNA-1:exon:12323;Parent=Msa0993390-mRNA-1 |
| chr6_4 | exon | 65897600 | 65897791 | 65897600 | ID=Msa0993390-mRNA-1:exon:12322;Parent=Msa0993390-mRNA-1 |
| chr6_4 | exon | 65898212 | 65898365 | 65898212 | ID=Msa0993390-mRNA-1:exon:12321;Parent=Msa0993390-mRNA-1 |
| chr6_4 | exon | 65898553 | 65898696 | 65898553 | ID=Msa0993390-mRNA-1:exon:12320;Parent=Msa0993390-mRNA-1 |
| chr6_4 | exon | 65899321 | 65899392 | 65899321 | ID=Msa0993390-mRNA-1:exon:12319;Parent=Msa0993390-mRNA-1 |
| chr6_4 | exon | 65900585 | 65900703 | 65900585 | ID=Msa0993390-mRNA-1:exon:12318;Parent=Msa0993390-mRNA-1 |
| chr6_4 | exon | 65900849 | 65901079 | 65900849 | ID=Msa0993390-mRNA-1:exon:12317;Parent=Msa0993390-mRNA-1 |
| chr6_4 | five_prime_UTR | 65901051 | 65901079 | 65901051 | ID=Msa0993390-mRNA-1:five_prime_utr;Parent=Msa0993390-mRNA-1 |
| chr6_4 | CDS | 65900849 | 65901050 | 65900849 | ID=Msa0993390-mRNA-1:cds;Parent=Msa0993390-mRNA-1 |
| chr6_4 | CDS | 65900585 | 65900703 | 65900585 | ID=Msa0993390-mRNA-1:cds;Parent=Msa0993390-mRNA-1 |
| chr6_4 | CDS | 65899321 | 65899392 | 65899321 | ID=Msa0993390-mRNA-1:cds;Parent=Msa0993390-mRNA-1 |
| chr6_4 | CDS | 65898553 | 65898696 | 65898553 | ID=Msa0993390-mRNA-1:cds;Parent=Msa0993390-mRNA-1 |
| chr6_4 | CDS | 65898212 | 65898365 | 65898212 | ID=Msa0993390-mRNA-1:cds;Parent=Msa0993390-mRNA-1 |
| chr6_4 | CDS | 65897600 | 65897791 | 65897600 | ID=Msa0993390-mRNA-1:cds;Parent=Msa0993390-mRNA-1 |
| chr6_4 | CDS | 65896865 | 65896869 | 65896865 | ID=Msa0993390-mRNA-1:cds;Parent=Msa0993390-mRNA-1 |
| chr6_4 | three_prime_UTR | 65896736 | 65896864 | 65896736 | ID=Msa0993390-mRNA-1:three_prime_utr;Parent=Msa0993390-mRNA-1 |
| chr6_4 | three_prime_UTR | 65896329 | 65896671 | 65896329 | ID=Msa0993390-mRNA-1:three_prime_utr;Parent=Msa0993390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
