AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1097210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAAGCTCTACATTATTT+TGG 0.131860 7_3:-22395363 Msa1097210:three_prime_UTR
ACTAGTGTAAAGGAGAAATA+TGG 0.261546 7_3:+22395328 None:intergenic
ACAACCCCGATGGCAGATAT+CGG 0.328536 7_3:+22397611 None:intergenic
AAGTTATATGATTAAGTTAT+GGG 0.335937 7_3:-22395163 Msa1097210:three_prime_UTR
TGCCATCGGGGTTGTGCGCT+TGG 0.347890 7_3:-22397603 Msa1097210:CDS
GCTTGGCTATTGTTCTTATC+TGG 0.364267 7_3:-22397586 Msa1097210:CDS
AGTTTCTTTACTCAGTTTAG+TGG 0.369411 7_3:-22395844 Msa1097210:intron
GAGCTGTTGAGGTTGTAATC+AGG 0.369889 7_3:-22397656 Msa1097210:five_prime_UTR
ATGTTGATTTGATTCTAGTT+TGG 0.373655 7_3:-22395302 Msa1097210:three_prime_UTR
AATCTTCTGACTGATTGTTC+TGG 0.378323 7_3:-22397699 Msa1097210:five_prime_UTR
TTCTGTATGCGTTAATTCAA+TGG 0.382221 7_3:-22396089 Msa1097210:intron
GGAGGCCAGACCCAATAAAA+TGG 0.391455 7_3:+22397462 None:intergenic
GAAGTTATATGATTAAGTTA+TGG 0.397580 7_3:-22395164 Msa1097210:three_prime_UTR
CTAGCTCGAGCTCATCTGAT+TGG 0.411308 7_3:-22397486 Msa1097210:CDS
CAACCCCGATGGCAGATATC+GGG 0.428442 7_3:+22397612 None:intergenic
TATAGATTTATATTCAGAAA+AGG 0.439008 7_3:-22395231 Msa1097210:three_prime_UTR
AAACTGCATCCTTTGCTAAA+GGG 0.439731 7_3:+22397232 None:intergenic
GTTCCCCGATATCTGCCATC+GGG 0.450025 7_3:-22397616 Msa1097210:CDS
AAAACTGCATCCTTTGCTAA+AGG 0.460379 7_3:+22397231 None:intergenic
TATCGTTTGGAAGTGATCAA+TGG 0.466251 7_3:-22397208 Msa1097210:exon
TCCTGCTCTTTGAGCTGTTG+AGG 0.474288 7_3:-22397667 Msa1097210:five_prime_UTR
AGAACAATCAGTCAGAAGAT+TGG 0.483318 7_3:+22397701 None:intergenic
TGAAATTCTCATCCCACGCC+TGG 0.491701 7_3:-22397514 Msa1097210:CDS
TAGCTCGAGCTCATCTGATT+GGG 0.492408 7_3:-22397485 Msa1097210:CDS
CTAGTGTAAAGGAGAAATAT+GGG 0.494177 7_3:+22395329 None:intergenic
CATCCTTTGCTAAAGGGAAA+GGG 0.498656 7_3:+22397238 None:intergenic
AGCTGTTGAGGTTGTAATCA+GGG 0.508951 7_3:-22397655 Msa1097210:five_prime_UTR
GCATCCTTTGCTAAAGGGAA+AGG 0.514176 7_3:+22397237 None:intergenic
GTTTAAGACGCTTCTGTGCA+AGG 0.519754 7_3:-22396120 Msa1097210:three_prime_UTR
TCAACATACTACTAGTGTAA+AGG 0.527209 7_3:+22395318 None:intergenic
TCTTCAACGATTTCCTCAGT+TGG 0.530591 7_3:-22395399 Msa1097210:three_prime_UTR
TGTTCCCCGATATCTGCCAT+CGG 0.550740 7_3:-22397617 Msa1097210:CDS
AAGCCCTTTCCCTTTAGCAA+AGG 0.556364 7_3:-22397241 Msa1097210:CDS
ACCTCAACAGCTCAAAGAGC+AGG 0.558777 7_3:+22397666 None:intergenic
GAGCTCGAGCTAGTAAAGCC+AGG 0.565783 7_3:+22397496 None:intergenic
TTTATGAATGCAGAATGGAA+AGG 0.576026 7_3:-22397265 Msa1097210:intron
CGAGCTAGTAAAGCCAGGCG+TGG 0.587215 7_3:+22397501 None:intergenic
GAGCTAGTAAAGCCAGGCGT+GGG 0.595619 7_3:+22397502 None:intergenic
AAAACTTGCTACTAAATAAG+GGG 0.596108 7_3:+22397747 None:intergenic
AGCCAAGCGCACAACCCCGA+TGG 0.603930 7_3:+22397601 None:intergenic
GATTGGAGCGTATCACAACT+CGG 0.629374 7_3:+22397718 None:intergenic
CAGTGATAAAGAGTGTGACA+TGG 0.641209 7_3:-22395424 Msa1097210:three_prime_UTR
AACCCCGATGGCAGATATCG+GGG 0.643907 7_3:+22397613 None:intergenic
TATAATCGGTCTGCCAACTG+AGG 0.665914 7_3:+22395386 None:intergenic
TTCCCCGATATCTGCCATCG+GGG 0.675361 7_3:-22397615 Msa1097210:CDS
TGTTGAGGTTGTAATCAGGG+CGG 0.755114 7_3:-22397652 Msa1097210:five_prime_UTR
TGGAGCGTATCACAACTCGG+AGG 0.808455 7_3:+22397721 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGACATTTTTATTTTTG+AGG - chr7_3:22395528-22395547 Msa1097210:intron 15.0%
!!! ATTGACATTTTTATTTTTGA+GGG - chr7_3:22395529-22395548 Msa1097210:intron 15.0%
!! ATCTATTTAAATCTAAGTAT+GGG - chr7_3:22395947-22395966 Msa1097210:intron 15.0%
!! TATAGATTTATATTCAGAAA+AGG - chr7_3:22397692-22397711 Msa1097210:five_prime_UTR 15.0%
!!! AAAAACTTGCTACTAAATAA+GGG + chr7_3:22395180-22395199 None:intergenic 20.0%
!!! TTGACATTTTTATTTTTGAG+GGG - chr7_3:22395530-22395549 Msa1097210:intron 20.0%
!! GATCTATTTAAATCTAAGTA+TGG - chr7_3:22395946-22395965 Msa1097210:intron 20.0%
!!! GTATTTATTCTATTTCTCAA+TGG - chr7_3:22396645-22396664 Msa1097210:intron 20.0%
!!! ATATTTCTGATAAACAGATA+TGG - chr7_3:22397238-22397257 Msa1097210:CDS 20.0%
!! GAAGTTATATGATTAAGTTA+TGG - chr7_3:22397759-22397778 Msa1097210:five_prime_UTR 20.0%
!!! AAAACTTGCTACTAAATAAG+GGG + chr7_3:22395179-22395198 None:intergenic 25.0%
!!! CAAAAACTTGCTACTAAATA+AGG + chr7_3:22395181-22395200 None:intergenic 25.0%
!! CTTATTTAGTAGCAAGTTTT+TGG - chr7_3:22395179-22395198 Msa1097210:three_prime_UTR 25.0%
!! TCAATATGATGAGTTTTCAT+TGG + chr7_3:22395514-22395533 None:intergenic 25.0%
!! TTTACTTTGTAACCACATTT+TGG - chr7_3:22395577-22395596 Msa1097210:intron 25.0%
!!! AAAGTATTGGATTCTTTTTG+AGG - chr7_3:22395610-22395629 Msa1097210:intron 25.0%
! ATTTGTTTATGAATGCAGAA+TGG - chr7_3:22395653-22395672 Msa1097210:intron 25.0%
! CTTGGAAAACTATACAAAAT+CGG - chr7_3:22396259-22396278 Msa1097210:intron 25.0%
!! AATTTCTAAGCATTTGAGTT+GGG - chr7_3:22397023-22397042 Msa1097210:intron 25.0%
!! AAGAAACTTCAAGTTAAACT+GGG + chr7_3:22397067-22397086 None:intergenic 25.0%
!! AAAGAAACTTCAAGTTAAAC+TGG + chr7_3:22397068-22397087 None:intergenic 25.0%
!!! ATGTTGATTTGATTCTAGTT+TGG - chr7_3:22397621-22397640 Msa1097210:CDS 25.0%
GTAAGTCCAATATGTATAGA+TGG + chr7_3:22395485-22395504 None:intergenic 30.0%
TTGCAATCATTTCCAAAATG+TGG + chr7_3:22395592-22395611 None:intergenic 30.0%
TGGAAATGATTGCAAAGTAT+TGG - chr7_3:22395597-22395616 Msa1097210:intron 30.0%
TTTATGAATGCAGAATGGAA+AGG - chr7_3:22395658-22395677 Msa1097210:intron 30.0%
GACTAAAAACTGAGAAAAGT+AGG - chr7_3:22395914-22395933 Msa1097210:intron 30.0%
! ATTGGAGATATACGCTATTT+TGG - chr7_3:22396102-22396121 Msa1097210:three_prime_UTR 30.0%
GGAAGACTATACAAATTATG+CGG - chr7_3:22396202-22396221 Msa1097210:intron 30.0%
CAATTATTCCACGATTAACA+AGG + chr7_3:22396302-22396321 None:intergenic 30.0%
CTTGTTAATCGTGGAATAAT+TGG - chr7_3:22396300-22396319 Msa1097210:intron 30.0%
ATCAAACCTTCAATAACAAG+TGG + chr7_3:22396377-22396396 None:intergenic 30.0%
TTTGATCCGAAATAGCAAAA+TGG - chr7_3:22396408-22396427 Msa1097210:intron 30.0%
! GTCACTTGTTTAAATTTTCC+AGG - chr7_3:22396468-22396487 Msa1097210:intron 30.0%
! ACTTGTTTAAATTTTCCAGG+TGG - chr7_3:22396471-22396490 Msa1097210:intron 30.0%
AGCTAAAATTTGTAACAGTG+TGG - chr7_3:22396516-22396535 Msa1097210:intron 30.0%
! CAAGTGATTTTTCATGACAA+AGG - chr7_3:22396575-22396594 Msa1097210:intron 30.0%
TTCTGTATGCGTTAATTCAA+TGG - chr7_3:22396834-22396853 Msa1097210:intron 30.0%
! CTGTACTGTTTTATCAGTTA+AGG - chr7_3:22396860-22396879 Msa1097210:intron 30.0%
!! GATTTTGGCAGAATAGTTTA+TGG - chr7_3:22396888-22396907 Msa1097210:intron 30.0%
CAATTTCTAAGCATTTGAGT+TGG - chr7_3:22397022-22397041 Msa1097210:intron 30.0%
AGTTTCTTTACTCAGTTTAG+TGG - chr7_3:22397079-22397098 Msa1097210:intron 30.0%
TAATGTTCTTGTTCACATTC+AGG - chr7_3:22397117-22397136 Msa1097210:intron 30.0%
TTCTGATAAACAGATATGGA+CGG - chr7_3:22397242-22397261 Msa1097210:CDS 30.0%
TACTATCGATATTTCTTCCT+CGG - chr7_3:22397404-22397423 Msa1097210:intron 30.0%
TTAGAAGATACTAAAATCCG+AGG + chr7_3:22397424-22397443 None:intergenic 30.0%
TTTGGAAACAATTAACATGC+AGG - chr7_3:22397476-22397495 Msa1097210:CDS 30.0%
!! TGTAGAGCTTTTGCTATAAT+CGG + chr7_3:22397554-22397573 None:intergenic 30.0%
! GCAAAAGCTCTACATTATTT+TGG - chr7_3:22397560-22397579 Msa1097210:CDS 30.0%
!!! AGCTCTACATTATTTTGGAA+AGG - chr7_3:22397565-22397584 Msa1097210:CDS 30.0%
!!! GCTCTACATTATTTTGGAAA+GGG - chr7_3:22397566-22397585 Msa1097210:CDS 30.0%
CTAGTGTAAAGGAGAAATAT+GGG + chr7_3:22397597-22397616 None:intergenic 30.0%
ACTAGTGTAAAGGAGAAATA+TGG + chr7_3:22397598-22397617 None:intergenic 30.0%
TCAACATACTACTAGTGTAA+AGG + chr7_3:22397608-22397627 None:intergenic 30.0%
AGAACAATCAGTCAGAAGAT+TGG + chr7_3:22395225-22395244 None:intergenic 35.0%
AATCTTCTGACTGATTGTTC+TGG - chr7_3:22395224-22395243 Msa1097210:three_prime_UTR 35.0%
!! ATCTGATTGGGCCATTTTAT+TGG - chr7_3:22395450-22395469 Msa1097210:intron 35.0%
!! TCTGATTGGGCCATTTTATT+GGG - chr7_3:22395451-22395470 Msa1097210:intron 35.0%
AGTCCAATATGTATAGATGG+AGG + chr7_3:22395482-22395501 None:intergenic 35.0%
AAACTGCATCCTTTGCTAAA+GGG + chr7_3:22395694-22395713 None:intergenic 35.0%
AAAACTGCATCCTTTGCTAA+AGG + chr7_3:22395695-22395714 None:intergenic 35.0%
! AGGATGCAGTTTTTATCGTT+TGG - chr7_3:22395702-22395721 Msa1097210:intron 35.0%
TATCGTTTGGAAGTGATCAA+TGG - chr7_3:22395715-22395734 Msa1097210:intron 35.0%
AAACTGAGAAAAGTAGGTTG+TGG - chr7_3:22395920-22395939 Msa1097210:intron 35.0%
AAGATAGAGAGGTTAGAGAA+GGG - chr7_3:22396023-22396042 Msa1097210:intron 35.0%
AAGATCAGTGTGTTTAGTCT+TGG - chr7_3:22396076-22396095 Msa1097210:intron 35.0%
!! TGTGTTTAGTCTTGGATGAT+TGG - chr7_3:22396084-22396103 Msa1097210:intron 35.0%
TAGACTGTTTCCGTTATCTA+TGG - chr7_3:22396169-22396188 Msa1097210:intron 35.0%
ACTTTGACGTCCATAGATAA+CGG + chr7_3:22396182-22396201 None:intergenic 35.0%
TAATCGTGGAATAATTGGAG+AGG - chr7_3:22396305-22396324 Msa1097210:intron 35.0%
ATCCGAAATAGCAAAATGGT+TGG - chr7_3:22396412-22396431 Msa1097210:intron 35.0%
TCCGAAATAGCAAAATGGTT+GGG - chr7_3:22396413-22396432 Msa1097210:intron 35.0%
!!! ACCCAACCATTTTGCTATTT+CGG + chr7_3:22396417-22396436 None:intergenic 35.0%
AATAGCAAAATGGTTGGGTT+TGG - chr7_3:22396418-22396437 Msa1097210:intron 35.0%
!! AAATTTTCCAGGTGGATTCA+AGG - chr7_3:22396479-22396498 Msa1097210:intron 35.0%
TCTCAATGGTTCACTTGTTT+AGG - chr7_3:22396659-22396678 Msa1097210:intron 35.0%
! ATGGTTCACTTGTTTAGGTT+TGG - chr7_3:22396664-22396683 Msa1097210:intron 35.0%
!! TGTTTAGGTTTGGTGTGTAA+TGG - chr7_3:22396674-22396693 Msa1097210:intron 35.0%
! TCAGTTAAGGTTGCAGATTT+TGG - chr7_3:22396873-22396892 Msa1097210:intron 35.0%
! GTGTTTCTTTGCTATATAGC+AGG - chr7_3:22396996-22397015 Msa1097210:intron 35.0%
TCTGATAAACAGATATGGAC+GGG - chr7_3:22397243-22397262 Msa1097210:CDS 35.0%
ACTCAATAGCATCACTGATA+AGG + chr7_3:22397324-22397343 None:intergenic 35.0%
! AGCTATCAGTCTGATCTTTT+TGG - chr7_3:22397458-22397477 Msa1097210:intron 35.0%
AGCTGTTGAGGTTGTAATCA+GGG - chr7_3:22395268-22395287 Msa1097210:three_prime_UTR 40.0%
GCTTGGCTATTGTTCTTATC+TGG - chr7_3:22395337-22395356 Msa1097210:three_prime_UTR 40.0%
TGGCCTCCATCTATACATAT+TGG - chr7_3:22395476-22395495 Msa1097210:intron 40.0%
CATCCTTTGCTAAAGGGAAA+GGG + chr7_3:22395688-22395707 None:intergenic 40.0%
TTAACATGACGAGAGTAGCA+TGG - chr7_3:22395785-22395804 Msa1097210:intron 40.0%
!! TTTGCTCTGAAACTTGTGCT+TGG - chr7_3:22395822-22395841 Msa1097210:intron 40.0%
ATCTAAGTATGGGCATGTTG+AGG - chr7_3:22395957-22395976 Msa1097210:intron 40.0%
TCTAAGTATGGGCATGTTGA+GGG - chr7_3:22395958-22395977 Msa1097210:intron 40.0%
ATGTTGAGGGTTAAATCGGA+AGG - chr7_3:22395971-22395990 Msa1097210:intron 40.0%
TGTTGAGGGTTAAATCGGAA+GGG - chr7_3:22395972-22395991 Msa1097210:intron 40.0%
GAAGATAGAGAGGTTAGAGA+AGG - chr7_3:22396022-22396041 Msa1097210:intron 40.0%
!!! CGCTATTTTGGTTGAAACAG+TGG - chr7_3:22396114-22396133 Msa1097210:three_prime_UTR 40.0%
GTTATCTATGGACGTCAAAG+TGG - chr7_3:22396181-22396200 Msa1097210:intron 40.0%
GCATGTGATCAGTCATTTGA+AGG - chr7_3:22396224-22396243 Msa1097210:intron 40.0%
TGTGATCAGTCATTTGAAGG+TGG - chr7_3:22396227-22396246 Msa1097210:intron 40.0%
ACAAAATCGGTTACCAGCAA+AGG - chr7_3:22396272-22396291 Msa1097210:intron 40.0%
TTAACAAGGTTGTCCTTTGC+TGG + chr7_3:22396288-22396307 None:intergenic 40.0%
AAGGACAACCTTGTTAATCG+TGG - chr7_3:22396291-22396310 Msa1097210:intron 40.0%
ACACTCATTTGTGTAGTGCA+GGG - chr7_3:22396328-22396347 Msa1097210:intron 40.0%
!! TGTGAGCCACTTGTTATTGA+AGG - chr7_3:22396368-22396387 Msa1097210:intron 40.0%
CAAAATGGTTGGGTTTGGAA+GGG - chr7_3:22396423-22396442 Msa1097210:intron 40.0%
AAAATGGTTGGGTTTGGAAG+GGG - chr7_3:22396424-22396443 Msa1097210:intron 40.0%
! TTGATTCCTAGCTCTCCAAA+CGG + chr7_3:22396558-22396577 None:intergenic 40.0%
TTTCAATGCTGCCATGGAAT+TGG - chr7_3:22396600-22396619 Msa1097210:intron 40.0%
!! TTAGCTTGCAACCAATTCCA+TGG + chr7_3:22396614-22396633 None:intergenic 40.0%
CATATATACCTAGAGACGCA+GGG + chr7_3:22396730-22396749 None:intergenic 40.0%
ACAGAGGGAAAATTGCTTGA+AGG + chr7_3:22396931-22396950 None:intergenic 40.0%
AGGACACTCAAAACAACAGA+GGG + chr7_3:22396946-22396965 None:intergenic 40.0%
!! TGTTTTGAGTGTCCTGGTAT+TGG - chr7_3:22396951-22396970 Msa1097210:intron 40.0%
AAGAAACACATTCAAGCACG+AGG + chr7_3:22397147-22397166 None:intergenic 40.0%
! CAGTGATAAAGAGTGTGACA+TGG - chr7_3:22397499-22397518 Msa1097210:CDS 40.0%
TCTTCAACGATTTCCTCAGT+TGG - chr7_3:22397524-22397543 Msa1097210:CDS 40.0%
! CACTTTCACATTTTCTGCGT+TGG + chr7_3:22397669-22397688 None:intergenic 40.0%
GATTGGAGCGTATCACAACT+CGG + chr7_3:22395208-22395227 None:intergenic 45.0%
GAGCTGTTGAGGTTGTAATC+AGG - chr7_3:22395267-22395286 Msa1097210:three_prime_UTR 45.0%
TGTTGAGGTTGTAATCAGGG+CGG - chr7_3:22395271-22395290 Msa1097210:three_prime_UTR 45.0%
TAGCTCGAGCTCATCTGATT+GGG - chr7_3:22395438-22395457 Msa1097210:intron 45.0%
!! TTGGGCCATTTTATTGGGTC+TGG - chr7_3:22395456-22395475 Msa1097210:intron 45.0%
AAGCCCTTTCCCTTTAGCAA+AGG - chr7_3:22395682-22395701 Msa1097210:intron 45.0%
GCATCCTTTGCTAAAGGGAA+AGG + chr7_3:22395689-22395708 None:intergenic 45.0%
GGGCATGTTGAGGGTTAAAT+CGG - chr7_3:22395967-22395986 Msa1097210:intron 45.0%
AGGGTTAAATCGGAAGGGTT+GGG - chr7_3:22395977-22395996 Msa1097210:intron 45.0%
GTTGGGTGTTTGATTCACCA+TGG - chr7_3:22395994-22396013 Msa1097210:intron 45.0%
CTCTCTATCTTCTTCCACCA+TGG + chr7_3:22396014-22396033 None:intergenic 45.0%
! CATGGTGGAAGAAGATAGAG+AGG - chr7_3:22396012-22396031 Msa1097210:intron 45.0%
!! AGGTTAGAGAAGGGTGTTGA+GGG - chr7_3:22396032-22396051 Msa1097210:intron 45.0%
TGGTTGAAACAGTGGATGAC+TGG - chr7_3:22396122-22396141 Msa1097210:three_prime_UTR 45.0%
GGTTGAAACAGTGGATGACT+GGG - chr7_3:22396123-22396142 Msa1097210:intron 45.0%
!!! TGAAGGTGGTTTTGTTCGCT+TGG - chr7_3:22396241-22396260 Msa1097210:intron 45.0%
GACACTCATTTGTGTAGTGC+AGG - chr7_3:22396327-22396346 Msa1097210:intron 45.0%
GCAAAATGGTTGGGTTTGGA+AGG - chr7_3:22396422-22396441 Msa1097210:intron 45.0%
!! TTTTCCAGGTGGATTCAAGG+AGG - chr7_3:22396482-22396501 Msa1097210:intron 45.0%
TAGCGTGTATTCAGTCCGTT+TGG - chr7_3:22396540-22396559 Msa1097210:intron 45.0%
! AAGGTGTTTCAATGCTGCCA+TGG - chr7_3:22396594-22396613 Msa1097210:intron 45.0%
AGACGCAGGGAAAAAAACAG+TGG + chr7_3:22396717-22396736 None:intergenic 45.0%
!!! GTTTTTTTCCCTGCGTCTCT+AGG - chr7_3:22396719-22396738 Msa1097210:intron 45.0%
CCATATATACCTAGAGACGC+AGG + chr7_3:22396731-22396750 None:intergenic 45.0%
CCTGCGTCTCTAGGTATATA+TGG - chr7_3:22396728-22396747 Msa1097210:intron 45.0%
GCGTCTCTAGGTATATATGG+TGG - chr7_3:22396731-22396750 Msa1097210:intron 45.0%
! GTTTAAGACGCTTCTGTGCA+AGG - chr7_3:22396803-22396822 Msa1097210:intron 45.0%
CAGGACACTCAAAACAACAG+AGG + chr7_3:22396947-22396966 None:intergenic 45.0%
!!! CTCTGTTGTTTTGAGTGTCC+TGG - chr7_3:22396945-22396964 Msa1097210:intron 45.0%
!! GTCCTGGTATTGGTGCTTTA+TGG - chr7_3:22396961-22396980 Msa1097210:intron 45.0%
! CTCCATAAAGCACCAATACC+AGG + chr7_3:22396966-22396985 None:intergenic 45.0%
TTGAACCTGCAATCAAGCCA+GGG - chr7_3:22397272-22397291 Msa1097210:intron 45.0%
TATAATCGGTCTGCCAACTG+AGG + chr7_3:22397540-22397559 None:intergenic 45.0%
TCCTGCTCTTTGAGCTGTTG+AGG - chr7_3:22395256-22395275 Msa1097210:three_prime_UTR 50.0%
ACCTCAACAGCTCAAAGAGC+AGG + chr7_3:22395260-22395279 None:intergenic 50.0%
TGTTCCCCGATATCTGCCAT+CGG - chr7_3:22395306-22395325 Msa1097210:three_prime_UTR 50.0%
ACAACCCCGATGGCAGATAT+CGG + chr7_3:22395315-22395334 None:intergenic 50.0%
TGAAATTCTCATCCCACGCC+TGG - chr7_3:22395409-22395428 Msa1097210:three_prime_UTR 50.0%
CTAGCTCGAGCTCATCTGAT+TGG - chr7_3:22395437-22395456 Msa1097210:intron 50.0%
GGAGGCCAGACCCAATAAAA+TGG + chr7_3:22395464-22395483 None:intergenic 50.0%
GAGGGTTAAATCGGAAGGGT+TGG - chr7_3:22395976-22395995 Msa1097210:intron 50.0%
GGGTGTTTGATTCACCATGG+TGG - chr7_3:22395997-22396016 Msa1097210:intron 50.0%
!! GAGGTTAGAGAAGGGTGTTG+AGG - chr7_3:22396031-22396050 Msa1097210:intron 50.0%
!! GGTTAGAGAAGGGTGTTGAG+GGG - chr7_3:22396033-22396052 Msa1097210:intron 50.0%
!! GTTAGAGAAGGGTGTTGAGG+GGG - chr7_3:22396034-22396053 Msa1097210:intron 50.0%
TCTTCCTCCTTGAATCCACC+TGG + chr7_3:22396489-22396508 None:intergenic 50.0%
TTCAGTCCGTTTGGAGAGCT+AGG - chr7_3:22396549-22396568 Msa1097210:intron 50.0%
TGTGTAATGGCCGAGTGTTC+TGG - chr7_3:22396687-22396706 Msa1097210:intron 50.0%
CAGTGGTGTTCCAGAACACT+CGG + chr7_3:22396700-22396719 None:intergenic 50.0%
GTTGAACCTGCAATCAAGCC+AGG - chr7_3:22397271-22397290 Msa1097210:intron 50.0%
TGAACCTGCAATCAAGCCAG+GGG - chr7_3:22397273-22397292 Msa1097210:intron 50.0%
CATACCAAAGTTGCATCCCC+TGG + chr7_3:22397292-22397311 None:intergenic 50.0%
TGGAGCGTATCACAACTCGG+AGG + chr7_3:22395205-22395224 None:intergenic 55.0%
GTTCCCCGATATCTGCCATC+GGG - chr7_3:22395307-22395326 Msa1097210:three_prime_UTR 55.0%
TTCCCCGATATCTGCCATCG+GGG - chr7_3:22395308-22395327 Msa1097210:three_prime_UTR 55.0%
AACCCCGATGGCAGATATCG+GGG + chr7_3:22395313-22395332 None:intergenic 55.0%
CAACCCCGATGGCAGATATC+GGG + chr7_3:22395314-22395333 None:intergenic 55.0%
GAGCTAGTAAAGCCAGGCGT+GGG + chr7_3:22395424-22395443 None:intergenic 55.0%
GAGCTCGAGCTAGTAAAGCC+AGG + chr7_3:22395430-22395449 None:intergenic 55.0%
CAAGCCAGGGGATGCAACTT+TGG - chr7_3:22397285-22397304 Msa1097210:intron 55.0%
CGAGCTAGTAAAGCCAGGCG+TGG + chr7_3:22395425-22395444 None:intergenic 60.0%
! GGTGTTGAGGGGGCAAGTCA+GGG - chr7_3:22396044-22396063 Msa1097210:intron 60.0%
TTGAGGGGGCAAGTCAGGGT+TGG - chr7_3:22396048-22396067 Msa1097210:intron 60.0%
! GCATCCCCTGGCTTGATTGC+AGG + chr7_3:22397280-22397299 None:intergenic 60.0%
TGCCATCGGGGTTGTGCGCT+TGG - chr7_3:22395320-22395339 Msa1097210:three_prime_UTR 65.0%
AGCCAAGCGCACAACCCCGA+TGG + chr7_3:22395325-22395344 None:intergenic 65.0%
!! GGGTGTTGAGGGGGCAAGTC+AGG - chr7_3:22396043-22396062 Msa1097210:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 22395163 22397782 22395163 ID=Msa1097210;Name=Msa1097210
chr7_3 mRNA 22395163 22397782 22395163 ID=Msa1097210-mRNA-1;Parent=Msa1097210;Name=Msa1097210-mRNA-1;_AED=0.35;_eAED=0.40;_QI=139|0.25|0.6|1|0|0.4|5|366|76
chr7_3 exon 22395163 22395447 22395163 ID=Msa1097210-mRNA-1:exon:4987;Parent=Msa1097210-mRNA-1
chr7_3 exon 22395845 22395851 22395845 ID=Msa1097210-mRNA-1:exon:4986;Parent=Msa1097210-mRNA-1
chr7_3 exon 22396090 22396141 22396090 ID=Msa1097210-mRNA-1:exon:4985;Parent=Msa1097210-mRNA-1
chr7_3 exon 22397193 22397274 22397193 ID=Msa1097210-mRNA-1:exon:4984;Parent=Msa1097210-mRNA-1
chr7_3 exon 22397473 22397782 22397473 ID=Msa1097210-mRNA-1:exon:4983;Parent=Msa1097210-mRNA-1
chr7_3 five_prime_UTR 22397644 22397782 22397644 ID=Msa1097210-mRNA-1:five_prime_utr;Parent=Msa1097210-mRNA-1
chr7_3 CDS 22397473 22397643 22397473 ID=Msa1097210-mRNA-1:cds;Parent=Msa1097210-mRNA-1
chr7_3 CDS 22397215 22397274 22397215 ID=Msa1097210-mRNA-1:cds;Parent=Msa1097210-mRNA-1
chr7_3 three_prime_UTR 22397193 22397214 22397193 ID=Msa1097210-mRNA-1:three_prime_utr;Parent=Msa1097210-mRNA-1
chr7_3 three_prime_UTR 22396090 22396141 22396090 ID=Msa1097210-mRNA-1:three_prime_utr;Parent=Msa1097210-mRNA-1
chr7_3 three_prime_UTR 22395845 22395851 22395845 ID=Msa1097210-mRNA-1:three_prime_utr;Parent=Msa1097210-mRNA-1
chr7_3 three_prime_UTR 22395163 22395447 22395163 ID=Msa1097210-mRNA-1:three_prime_utr;Parent=Msa1097210-mRNA-1
Gene Sequence

>Msa1097210

ATGCTGTTCCCCGATATCTGCCATCGGGGTTGTGCGCTTGGCTATTGTTCTTATCTGGAAGATAAGAGCTCAGCTAGTATCTCAATTCTCAATAACAGTTCTTCATGTGAAATTCTCATCCCACGCCTGGCTTTACTAGCTCGAGCTCATCTGATTGGGCCATTTTATTGGAATGGAAAGGAAAGCCCTTTCCCTTTAGCAAAGGATGCAGTTTTTATCGTTTGGAAGTGA

Protein sequence

>Msa1097210

MLFPDICHRGCALGYCSYLEDKSSASISILNNSSSCEILIPRLALLARAHLIGPFYWNGKESPFPLAKDAVFIVWK*