AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1319580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319580 MtrunA17_Chr8g0350161 87.568 370 6 3 1 331 1 369 0.0 626
Msa1319580 MtrunA17_Chr7g0266491 39.706 204 116 2 117 320 154 350 1.91e-37 140
Msa1319580 MtrunA17_Chr2g0333241 33.990 203 127 2 128 330 100 295 2.08e-29 117
Msa1319580 MtrunA17_Chr4g0003161 33.990 203 127 2 128 330 100 295 8.27e-29 115
Msa1319580 MtrunA17_Chr4g0073891 33.333 216 124 5 127 330 423 630 6.09e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319580 AT2G45770.1 70.765 366 70 3 1 330 1 365 3.04e-178 498
Msa1319580 AT5G03940.1 40.654 214 120 2 117 330 164 370 6.99e-40 147
Msa1319580 AT1G15310.1 36.453 203 122 3 128 330 100 295 2.45e-31 123
Msa1319580 AT1G48900.2 34.975 203 125 3 128 330 100 295 3.76e-29 116
Msa1319580 AT1G48900.1 34.975 203 125 3 128 330 100 295 1.11e-28 115
Msa1319580 AT5G49500.1 32.195 205 130 3 128 330 100 297 1.16e-24 104
Msa1319580 AT5G49500.2 32.584 178 113 2 153 330 5 175 1.29e-22 97.4
Msa1319580 AT4G30600.2 33.796 216 123 5 127 330 426 633 4.48e-20 91.7
Msa1319580 AT4G30600.1 33.796 216 123 5 127 330 426 633 4.48e-20 91.7

Find 112 sgRNAs with CRISPR-Local

Find 551 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGGGTGAAAATGATTT+TGG 0.125912 8_4:-22948730 Msa1319580:three_prime_UTR
TTGATGAGCTTCTTCTTTAT+TGG 0.152429 8_4:-22956513 Msa1319580:CDS
CTCTTCCATTAGCCTGTAAT+TGG 0.202802 8_4:+22952279 None:intergenic
GGAGAGATTGTTACGAGTTT+TGG 0.248300 8_4:+22956540 None:intergenic
GGACAGGTTGTGGGTGTAAC+TGG 0.259487 8_4:-22950603 Msa1319580:intron
TGCTTTGTGGTTGGCAGTTT+CGG 0.271943 8_4:-22948652 Msa1319580:three_prime_UTR
GCAGGAGATCTTACTGGTTC+TGG 0.276643 8_4:-22951128 Msa1319580:intron
AGAGTTAATTTCTTGTAAAA+AGG 0.283124 8_4:-22952260 Msa1319580:CDS
CAGGTTTACACACCAATTAC+AGG 0.291032 8_4:-22952291 Msa1319580:CDS
ACGAAGGTTTCACGAATCTT+AGG 0.309622 8_4:-22948225 Msa1319580:three_prime_UTR
AGCACTGAAGAAGAATGTTT+TGG 0.320378 8_4:-22954492 Msa1319580:CDS
ATTTGTACCTGCTGATGCTT+TGG 0.322384 8_4:+22952610 None:intergenic
AATCAGTTATTGACAAATAA+TGG 0.324082 8_4:+22948514 None:intergenic
ATTCTTGCAGGAGATCTTAC+TGG 0.333093 8_4:-22951134 Msa1319580:intron
CTAGTGATCAGCTAGAAATA+TGG 0.333355 8_4:-22952679 Msa1319580:CDS
CACATACCAAAGCCTGCTTA+TGG 0.334135 8_4:+22950286 None:intergenic
AAGATGAGGAATTGTGGTTT+TGG 0.349517 8_4:+22956709 None:intergenic
CTGAACTTCAACTTGGATAT+AGG 0.353693 8_4:-22954442 Msa1319580:intron
CAAAGCTATTCTTGCTTTGA+AGG 0.356899 8_4:-22948702 Msa1319580:three_prime_UTR
AACACCAACTATCATTATTA+CGG 0.358526 8_4:+22954309 None:intergenic
ATAATGATAGTTGGTGTTAA+TGG 0.374585 8_4:-22954304 Msa1319580:CDS
CTGGTTCTGGATGGAACTAC+TGG 0.380978 8_4:-22951115 Msa1319580:CDS
TGCTCCGCCGCCGGTGAAAT+CGG 0.384664 8_4:-22956637 Msa1319580:CDS
TGCTTTGAAGGCAGCTCAGC+TGG 0.387155 8_4:-22948690 Msa1319580:three_prime_UTR
ATTTACTTCATTGAATTCTC+TGG 0.387565 8_4:+22951072 None:intergenic
TGGTGGGAAGACAACATCTT+TGG 0.387855 8_4:-22954281 Msa1319580:CDS
GGGTTTGGTTTGAAATGGGG+TGG 0.392824 8_4:+22956684 None:intergenic
TGTAAACCATAAGCAGGCTT+TGG 0.401080 8_4:-22950292 Msa1319580:intron
ACGGGGTTTATTTCCACTCT+TGG 0.406315 8_4:-22948615 Msa1319580:three_prime_UTR
GCTGAAGCACACAGCAGAAA+TGG 0.420264 8_4:-22956773 Msa1319580:exon
GAAATATGGGCTGAAAGGAC+TGG 0.422519 8_4:-22952665 Msa1319580:CDS
TTTGTCTTGGGACAGGTTGT+GGG 0.424495 8_4:-22950612 Msa1319580:intron
ACACACCAATTACAGGCTAA+TGG 0.426484 8_4:-22952284 Msa1319580:CDS
GGAATCCCTGTAAAATTTGT+TGG 0.431790 8_4:-22950380 Msa1319580:CDS
CCTTGTTCGAAAGTTGTTCC+CGG 0.434366 8_4:+22948426 None:intergenic
TCTTGCAGAACCATCCAGTT+TGG 0.435962 8_4:+22950569 None:intergenic
CGGCGGCGGAGCATGTGAAC+CGG 0.436167 8_4:+22956647 None:intergenic
TCGGACAAAACGACAATGAC+GGG 0.445368 8_4:-22948633 Msa1319580:three_prime_UTR
CCTCTGCATCAAAGGGTTGA+AGG 0.448221 8_4:+22950336 None:intergenic
TAACCCCTTTGCATGCTTTG+TGG 0.450371 8_4:-22948665 Msa1319580:three_prime_UTR
CCTGTAAAATTTGTTGGTGT+TGG 0.450968 8_4:-22950374 Msa1319580:CDS
GACAAAGGCCTCTGCATCAA+AGG 0.465291 8_4:+22950328 None:intergenic
AAAATTCTACCAGATATTGT+TGG 0.466991 8_4:-22952729 Msa1319580:intron
GTGAACCGGGTTCGAGATGA+GGG 0.467454 8_4:+22956661 None:intergenic
GAACATGAAGAGTGAACATA+TGG 0.467626 8_4:-22948538 Msa1319580:three_prime_UTR
GGTGGGAAGACAACATCTTT+GGG 0.469114 8_4:-22954280 Msa1319580:intron
GATGTAGAGAAACTCTTCTC+TGG 0.470900 8_4:-22956568 Msa1319580:CDS
CCCTTTGCATGCTTTGTGGT+TGG 0.482595 8_4:-22948661 Msa1319580:three_prime_UTR
GCTGTTGCTAAAGTAGTTGC+TGG 0.491147 8_4:-22952238 Msa1319580:CDS
AGCTAGAAATATGGGCTGAA+AGG 0.492518 8_4:-22952670 Msa1319580:CDS
CCAACTATCATTATTACGGC+TGG 0.492849 8_4:+22954313 None:intergenic
CCAACCACAAAGCATGCAAA+GGG 0.493705 8_4:+22948661 None:intergenic
CTTTCTTCAACTTCTCAATG+AGG 0.499357 8_4:-22948474 Msa1319580:three_prime_UTR
TAGTGATCAGCTAGAAATAT+GGG 0.501137 8_4:-22952678 Msa1319580:CDS
ATTGTATTATGTGATACATC+TGG 0.501382 8_4:-22952402 Msa1319580:CDS
ATAGTTGGTGTTAATGGTGG+TGG 0.506081 8_4:-22954298 Msa1319580:CDS
GTCAGTGTGGTTGATGAGCT+TGG 0.506198 8_4:-22950401 Msa1319580:CDS
TACCAGATATTGTTGGCAGC+TGG 0.506306 8_4:-22952722 Msa1319580:intron
CTCATTGAGAAGTTGAAGAA+AGG 0.512308 8_4:+22948475 None:intergenic
GAAGCTTGGCCTCGCAAGAA+TGG 0.513733 8_4:+22948753 None:intergenic
CGGTTCACATGCTCCGCCGC+CGG 0.521204 8_4:-22956646 Msa1319580:CDS
AAATATGGGCTGAAAGGACT+GGG 0.523298 8_4:-22952664 Msa1319580:CDS
CTGGCTTATAGATTGAAGAA+TGG 0.541325 8_4:-22953971 Msa1319580:CDS
ATTGAAGAATGGAGGTGCTA+AGG 0.542507 8_4:-22953960 Msa1319580:intron
TGCGAGGCCAAGCTTCGCAA+AGG 0.544171 8_4:-22948746 Msa1319580:three_prime_UTR
TCATTGAATTCTCTGGCTTG+TGG 0.544319 8_4:+22951079 None:intergenic
ACAAAGGCCTCTGCATCAAA+GGG 0.548879 8_4:+22950329 None:intergenic
CGAATATGCAGAGCAACACT+AGG 0.550173 8_4:-22948807 Msa1319580:three_prime_UTR
TTCAAGTTCAATGCCAAGAG+TGG 0.551912 8_4:+22948602 None:intergenic
ATCGGTTTATTCACAAAACT+CGG 0.554596 8_4:-22956619 Msa1319580:CDS
GAGAAATCCAAAGCATCAGC+AGG 0.562472 8_4:-22952617 Msa1319580:intron
CCTTCAACCCTTTGATGCAG+AGG 0.562696 8_4:-22950336 Msa1319580:CDS
AGTAAAACTGAACTTCAACT+TGG 0.564527 8_4:-22954449 Msa1319580:CDS
AAATTTGTTGGTGTTGGTGA+AGG 0.564716 8_4:-22950368 Msa1319580:CDS
GCGAGGCCAAGCTTCGCAAA+GGG 0.565738 8_4:-22948745 Msa1319580:three_prime_UTR
TGTGAATAAACCGATTTCAC+CGG 0.568295 8_4:+22956627 None:intergenic
TGTGAACCGGGTTCGAGATG+AGG 0.574121 8_4:+22956660 None:intergenic
TTTGGATTTGTTAAGCAACA+AGG 0.578155 8_4:-22954474 Msa1319580:CDS
GGCGGCGGAGCATGTGAACC+GGG 0.581453 8_4:+22956648 None:intergenic
CCAGCCGTAATAATGATAGT+TGG 0.582690 8_4:-22954313 Msa1319580:CDS
AAGAAGAAGCTCATCAATGA+CGG 0.586886 8_4:+22956519 None:intergenic
AAGGTTTCACGAATCTTAGG+TGG 0.588539 8_4:-22948222 Msa1319580:three_prime_UTR
GCCAACCACAAAGCATGCAA+AGG 0.588604 8_4:+22948660 None:intergenic
TTGGATTTGTTAAGCAACAA+GGG 0.588870 8_4:-22954473 Msa1319580:CDS
GAACCGGGTTCGAGATGAGG+GGG 0.589872 8_4:+22956663 None:intergenic
GTTTATTCACAAAACTCGGC+CGG 0.591206 8_4:-22956615 Msa1319580:CDS
GAGATCTTACTGGTTCTGGA+TGG 0.592324 8_4:-22951124 Msa1319580:CDS
AAACTGGATGGTTCTGCAAG+AGG 0.592327 8_4:-22950567 Msa1319580:CDS
GCAGAGCAACACTAGGTCAC+AGG 0.594813 8_4:-22948800 Msa1319580:three_prime_UTR
CCGGGAACAACTTTCGAACA+AGG 0.597192 8_4:-22948426 Msa1319580:intron
AGTTCTTGATGAACTCGAAG+AGG 0.599876 8_4:-22956470 Msa1319580:intron
TAAACCGATTTCACCGGCGG+CGG 0.608058 8_4:+22956633 None:intergenic
GTGGTGAAGATGAGGAATTG+TGG 0.609016 8_4:+22956703 None:intergenic
GAAATGGGGTGGTGAAGATG+AGG 0.611340 8_4:+22956695 None:intergenic
TTCGGACAAAACGACAATGA+CGG 0.611770 8_4:-22948634 Msa1319580:three_prime_UTR
TGGATTTGTTAAGCAACAAG+GGG 0.614912 8_4:-22954472 Msa1319580:CDS
GAGGCGGGTGAATGAAGCAG+AGG 0.615384 8_4:+22956741 None:intergenic
AACCGGGTTCGAGATGAGGG+GGG 0.622086 8_4:+22956664 None:intergenic
TCATTTAATCCATTCTTGCG+AGG 0.626151 8_4:-22948762 Msa1319580:three_prime_UTR
TGAACCGGGTTCGAGATGAG+GGG 0.627367 8_4:+22956662 None:intergenic
TAGTTGGTGTTAATGGTGGT+GGG 0.640615 8_4:-22954297 Msa1319580:CDS
GAATAAACCGATTTCACCGG+CGG 0.642776 8_4:+22956630 None:intergenic
TATTTCTAGCTGATCACTAG+CGG 0.649322 8_4:+22952682 None:intergenic
CGGACAAAACGACAATGACG+GGG 0.649572 8_4:-22948632 Msa1319580:three_prime_UTR
GCTTATAGATTGAAGAATGG+AGG 0.650080 8_4:-22953968 Msa1319580:CDS
ATGATAGTTGGTGTTAATGG+TGG 0.652803 8_4:-22954301 Msa1319580:CDS
CTGGATGGTTCTGCAAGAGG+TGG 0.654793 8_4:-22950564 Msa1319580:CDS
GACTGGGTGTGAGATTGTTG+TGG 0.655858 8_4:-22952648 Msa1319580:CDS
CATGAGAGTATTGCTCACGA+AGG 0.659661 8_4:-22948241 Msa1319580:three_prime_UTR
TTCTGCAAGAGGTGGCTGTG+TGG 0.671813 8_4:-22950556 Msa1319580:intron
TTACTGTTGGCAGGTCAGTG+TGG 0.716550 8_4:-22950414 Msa1319580:intron
CAACCACAAAGCATGCAAAG+GGG 0.738803 8_4:+22948662 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAATAATATAATAATA+AGG + chr8_4:22952461-22952480 None:intergenic 0.0%
!! TATTATTATATTATTATATA+TGG - chr8_4:22952461-22952480 Msa1319580:intron 0.0%
!!! AAATAAAATTTTAAAAAAAA+CGG + chr8_4:22955121-22955140 None:intergenic 0.0%
!!! CTTTATTTATTAATTATTAC+AGG - chr8_4:22948597-22948616 Msa1319580:three_prime_UTR 10.0%
!!! TATTATTATGACTTTTATAA+TGG + chr8_4:22949227-22949246 None:intergenic 10.0%
!! TTATAAATATTTGACTATAT+AGG - chr8_4:22950344-22950363 Msa1319580:CDS 10.0%
!!! AATAGAAATTTCAATTTTTA+TGG - chr8_4:22950437-22950456 Msa1319580:intron 10.0%
!! TTATATTATTATATATGGTT+TGG - chr8_4:22952466-22952485 Msa1319580:intron 10.0%
!!! TCTAAAATTATATGAATTAA+CGG - chr8_4:22953805-22953824 Msa1319580:intron 10.0%
!!! ATTATTTTTTATTTCTATCA+AGG - chr8_4:22954513-22954532 Msa1319580:intron 10.0%
!!! TTATTTTTTATTTCTATCAA+GGG - chr8_4:22954514-22954533 Msa1319580:intron 10.0%
!!! ATAAAATTTTAAAAAAAACG+GGG + chr8_4:22955119-22955138 None:intergenic 10.0%
!! TAAATTTGAAAATACTAAAT+TGG + chr8_4:22955303-22955322 None:intergenic 10.0%
!! AAAAAAAAACAATAATAGCT+TGG + chr8_4:22948551-22948570 None:intergenic 15.0%
!!! ACAATCTTAATAGTAATTTT+CGG + chr8_4:22948646-22948665 None:intergenic 15.0%
!! AAAAACTAACTTCAATTAAT+TGG + chr8_4:22948753-22948772 None:intergenic 15.0%
!! TCAACAATTATAATTGATAA+CGG + chr8_4:22949174-22949193 None:intergenic 15.0%
!! CTTGGTAAAATAATATAATA+AGG + chr8_4:22949982-22950001 None:intergenic 15.0%
!! CAAAAATAAATCTATATACT+TGG + chr8_4:22950000-22950019 None:intergenic 15.0%
!! CTATATAGGATATTTATTTA+TGG - chr8_4:22950358-22950377 Msa1319580:CDS 15.0%
!!! ATTGTTGATTCTATTATTTA+TGG - chr8_4:22950727-22950746 Msa1319580:intron 15.0%
!! TAACGTATATTATGTAATTA+AGG - chr8_4:22951193-22951212 Msa1319580:intron 15.0%
!! ATTAAAAGACAAACAATAAA+TGG - chr8_4:22951633-22951652 Msa1319580:intron 15.0%
!! TATTGTATATAATAAATGCA+TGG + chr8_4:22951859-22951878 None:intergenic 15.0%
!! AAAACTTATAAAGTGATAAA+TGG + chr8_4:22952410-22952429 None:intergenic 15.0%
!!! ATTAACTTGAAAAACAAAAA+AGG + chr8_4:22952887-22952906 None:intergenic 15.0%
!!! TTATATTGTTATCTTCTTTT+TGG - chr8_4:22952914-22952933 Msa1319580:intron 15.0%
!!! TAAAATTTTAAAAAAAACGG+GGG + chr8_4:22955118-22955137 None:intergenic 15.0%
!!! AAATTTAACTCCAATTTTAA+TGG - chr8_4:22955316-22955335 Msa1319580:intron 15.0%
!!! ATTGTTATTTCTTATATTTG+AGG - chr8_4:22955469-22955488 Msa1319580:intron 15.0%
!!! TTGTTATTTCTTATATTTGA+GGG - chr8_4:22955470-22955489 Msa1319580:intron 15.0%
!!! TAGTAATAAAGTATTTAGAT+TGG - chr8_4:22955719-22955738 Msa1319580:intron 15.0%
!!! TATTACACTTTTTATAACAA+GGG + chr8_4:22955812-22955831 None:intergenic 15.0%
!!! ATATTACACTTTTTATAACA+AGG + chr8_4:22955813-22955832 None:intergenic 15.0%
!! TTGTACCAATAAAAAAAAAA+GGG - chr8_4:22956692-22956711 Msa1319580:CDS 15.0%
!! GAAAATTACTATTAAGATTG+TGG - chr8_4:22948645-22948664 Msa1319580:three_prime_UTR 20.0%
!!! TTGAAGTTAGTTTTTTTACA+CGG - chr8_4:22948758-22948777 Msa1319580:three_prime_UTR 20.0%
!!! ATACCAAGTAGATATTTTTA+GGG - chr8_4:22948819-22948838 Msa1319580:three_prime_UTR 20.0%
!!! TGTCACATACTTTTTTTTTT+TGG - chr8_4:22949114-22949133 Msa1319580:intron 20.0%
!! TTATCCATACTTTCAAAAAT+TGG + chr8_4:22949552-22949571 None:intergenic 20.0%
!! TAATCATATTATAGGTATGA+AGG + chr8_4:22949897-22949916 None:intergenic 20.0%
!!! TTTTTCGGTAATCATATTAT+AGG + chr8_4:22949905-22949924 None:intergenic 20.0%
!! AATATTTATAAAATGCAGGA+TGG + chr8_4:22950335-22950354 None:intergenic 20.0%
!! GTCAAATATTTATAAAATGC+AGG + chr8_4:22950339-22950358 None:intergenic 20.0%
!!! TTATTTATGGTTTTAAGTCT+TGG - chr8_4:22950371-22950390 Msa1319580:CDS 20.0%
!! TTTCTATTTGATAAATGCAA+GGG + chr8_4:22950425-22950444 None:intergenic 20.0%
!! ATTTCTATTTGATAAATGCA+AGG + chr8_4:22950426-22950445 None:intergenic 20.0%
!!! TTCAATTTTTATGGTATGAA+TGG - chr8_4:22950446-22950465 Msa1319580:intron 20.0%
!!! TTCATTTTTGTGCTTTATAT+TGG - chr8_4:22950611-22950630 Msa1319580:intron 20.0%
!! TTGGATTAAATTTCATTTAC+AGG - chr8_4:22950630-22950649 Msa1319580:intron 20.0%
!! TTCTATATTGTTAATTGCTT+GGG + chr8_4:22950933-22950952 None:intergenic 20.0%
!! TTTCTATATTGTTAATTGCT+TGG + chr8_4:22950934-22950953 None:intergenic 20.0%
!! ATAAAAGATATCCAATAATG+AGG + chr8_4:22951429-22951448 None:intergenic 20.0%
!! AAAAAATATCTTTAGATCCT+TGG - chr8_4:22951515-22951534 Msa1319580:intron 20.0%
!!! ATTTTAAATGTTTGTGTAGA+CGG + chr8_4:22952038-22952057 None:intergenic 20.0%
!!! AAGATCATATCATATTTTCT+TGG - chr8_4:22952155-22952174 Msa1319580:intron 20.0%
!! ACGTAAGTACTAAAATTTAA+CGG - chr8_4:22952590-22952609 Msa1319580:intron 20.0%
!! AGAGTTAATTTCTTGTAAAA+AGG - chr8_4:22952709-22952728 Msa1319580:CDS 20.0%
!! ACAAGAAAATTATGATGTAA+AGG + chr8_4:22952838-22952857 None:intergenic 20.0%
!! AGAAGATAACAATATAACTT+AGG + chr8_4:22952911-22952930 None:intergenic 20.0%
!! ATGAACAATTATTATGTGAT+GGG - chr8_4:22952989-22953008 Msa1319580:intron 20.0%
!!! AACACAATCTTTTTTTAATG+AGG - chr8_4:22953243-22953262 Msa1319580:intron 20.0%
!!! TGCATTGATTAATAGATAAA+TGG + chr8_4:22953386-22953405 None:intergenic 20.0%
!!! TTAAAATTTAGGATACGATA+CGG + chr8_4:22954059-22954078 None:intergenic 20.0%
!!! ACGCGAAATTTTTAAAATTT+AGG + chr8_4:22954070-22954089 None:intergenic 20.0%
!! TATTTCGATATTTGGTATTA+TGG - chr8_4:22954282-22954301 Msa1319580:CDS 20.0%
!! TCTGTAATCATATATTGAAT+GGG + chr8_4:22954802-22954821 None:intergenic 20.0%
!! ATCTGTAATCATATATTGAA+TGG + chr8_4:22954803-22954822 None:intergenic 20.0%
!! TTTAAACTTCATTAAGAGAA+GGG + chr8_4:22955082-22955101 None:intergenic 20.0%
!! ATTTAAACTTCATTAAGAGA+AGG + chr8_4:22955083-22955102 None:intergenic 20.0%
!! AATGAAGTTTAAATTTACGT+TGG - chr8_4:22955089-22955108 Msa1319580:intron 20.0%
!! TAACAATATTCCTTTCTTAA+AGG + chr8_4:22955161-22955180 None:intergenic 20.0%
!!! ATTTTAGTCATTGAAATGTA+AGG - chr8_4:22955223-22955242 Msa1319580:intron 20.0%
!!! TTTTAGTCATTGAAATGTAA+GGG - chr8_4:22955224-22955243 Msa1319580:intron 20.0%
!!! TTACGAGTAAATAATCATTT+TGG + chr8_4:22955528-22955547 None:intergenic 20.0%
!!! TATTTACTCGTAATTTGTTA+TGG - chr8_4:22955535-22955554 Msa1319580:intron 20.0%
!! TGAAGTATAGTTTAAATAAG+AGG - chr8_4:22955843-22955862 Msa1319580:intron 20.0%
!! GAAGTATAGTTTAAATAAGA+GGG - chr8_4:22955844-22955863 Msa1319580:intron 20.0%
!!! AAATACAAGATCAATTTTAG+AGG + chr8_4:22955895-22955914 None:intergenic 20.0%
!! AAACTATACTTTCTTTATCT+GGG + chr8_4:22955984-22956003 None:intergenic 20.0%
!! TAAACTATACTTTCTTTATC+TGG + chr8_4:22955985-22956004 None:intergenic 20.0%
!!! TCTAAAATCTAAACAAAGAA+TGG - chr8_4:22956006-22956025 Msa1319580:intron 20.0%
!! AATCTACTCTTACTATTATT+TGG - chr8_4:22956099-22956118 Msa1319580:intron 20.0%
!! AATCAGTTATTGACAAATAA+TGG + chr8_4:22956458-22956477 None:intergenic 20.0%
!!! TTTTTTTTATTGGTACAAGT+TGG + chr8_4:22956690-22956709 None:intergenic 20.0%
!! CTTGTACCAATAAAAAAAAA+AGG - chr8_4:22956691-22956710 Msa1319580:CDS 20.0%
!!! TTGCTTTTTCTTTTAGTAAC+CGG + chr8_4:22948376-22948395 None:intergenic 25.0%
!!! GCTTTATTAGTTTCTGATTT+TGG - chr8_4:22948619-22948638 Msa1319580:three_prime_UTR 25.0%
! TTAAGATTGTGGAGAATTTA+AGG - chr8_4:22948656-22948675 Msa1319580:three_prime_UTR 25.0%
! TAAGATTGTGGAGAATTTAA+GGG - chr8_4:22948657-22948676 Msa1319580:three_prime_UTR 25.0%
!! CATACCAAGTAGATATTTTT+AGG - chr8_4:22948818-22948837 Msa1319580:three_prime_UTR 25.0%
! TATCCCTAAAAATATCTACT+TGG + chr8_4:22948825-22948844 None:intergenic 25.0%
! TGTAAAATTTCTTACATGCA+TGG + chr8_4:22948967-22948986 None:intergenic 25.0%
!!! TTACAAAGTTGTTGATTTCA+TGG + chr8_4:22949352-22949371 None:intergenic 25.0%
!!! ACAAGATTGGTTTGTTTAAT+TGG + chr8_4:22949422-22949441 None:intergenic 25.0%
!! TAAATGCTTTTCGAAACATT+TGG - chr8_4:22949476-22949495 Msa1319580:intron 25.0%
! GATCTGTTATCTTATACATA+AGG + chr8_4:22949671-22949690 None:intergenic 25.0%
! ATGAAGAAAATTTGATAGAG+AGG - chr8_4:22949823-22949842 Msa1319580:intron 25.0%
!! ATGATTACCGAAAAATGTTT+TGG - chr8_4:22949910-22949929 Msa1319580:intron 25.0%
!! TTTATGGTATGAATGGTTTT+AGG - chr8_4:22950453-22950472 Msa1319580:intron 25.0%
! AACACCAACTATCATTATTA+CGG + chr8_4:22950663-22950682 None:intergenic 25.0%
!!! ATAATGATAGTTGGTGTTAA+TGG - chr8_4:22950665-22950684 Msa1319580:intron 25.0%
! ATTCTATTATTTATGGAGCA+AGG - chr8_4:22950734-22950753 Msa1319580:intron 25.0%
! GAACAAACCAAAATGTTTAA+AGG - chr8_4:22950857-22950876 Msa1319580:intron 25.0%
!! TGTAACACCTTTAAACATTT+TGG + chr8_4:22950867-22950886 None:intergenic 25.0%
! AAGCAAAAAGCTTATCAAAT+CGG + chr8_4:22950969-22950988 None:intergenic 25.0%
!! TTATACTGTGAGTTTTTCTT+TGG - chr8_4:22951037-22951056 Msa1319580:intron 25.0%
! TAGATTACTTTATACCTAAC+AGG + chr8_4:22951247-22951266 None:intergenic 25.0%
! AGGTATAAAGTAATCTACTT+AGG - chr8_4:22951250-22951269 Msa1319580:intron 25.0%
!!! GAGGATATTTTTGTTTCATT+TGG - chr8_4:22951462-22951481 Msa1319580:intron 25.0%
!!! GCTATTTCTTGCATAAATTT+AGG - chr8_4:22951489-22951508 Msa1319580:intron 25.0%
! TATACTCAAATGAGAAAAGA+GGG - chr8_4:22951547-22951566 Msa1319580:intron 25.0%
!!! CAAACAATAAATGGTTTTAC+AGG - chr8_4:22951642-22951661 Msa1319580:intron 25.0%
!!! AAATGGTTTTACAGGAAAAT+TGG - chr8_4:22951650-22951669 Msa1319580:intron 25.0%
!! GAACTGTTTAAAATGAGATT+AGG - chr8_4:22951831-22951850 Msa1319580:intron 25.0%
! TTGTATCATATCTTGTAAAC+AGG - chr8_4:22951882-22951901 Msa1319580:intron 25.0%
! TGTATCATATCTTGTAAACA+GGG - chr8_4:22951883-22951902 Msa1319580:intron 25.0%
! AGTATAAAACATATACACTG+GGG + chr8_4:22952064-22952083 None:intergenic 25.0%
! CAGTATAAAACATATACACT+GGG + chr8_4:22952065-22952084 None:intergenic 25.0%
! ACAGTATAAAACATATACAC+TGG + chr8_4:22952066-22952085 None:intergenic 25.0%
! ATACTAAAAATCACCTCAAT+TGG + chr8_4:22952133-22952152 None:intergenic 25.0%
! AAAATTCTACCAGATATTGT+TGG - chr8_4:22952240-22952259 Msa1319580:CDS 25.0%
! ATTGTATTATGTGATACATC+TGG - chr8_4:22952567-22952586 Msa1319580:intron 25.0%
!!! CTGTTTTGAACTTTAATACT+TGG - chr8_4:22952617-22952636 Msa1319580:intron 25.0%
!!! TTTTCTTGTTTTTGAATCCA+CGG - chr8_4:22952849-22952868 Msa1319580:intron 25.0%
! AAACAAAAAAGGTCTTTCAA+GGG + chr8_4:22952876-22952895 None:intergenic 25.0%
! AAAACAAAAAAGGTCTTTCA+AGG + chr8_4:22952877-22952896 None:intergenic 25.0%
!!! TTATCTTCTTTTTGGTTTTC+TGG - chr8_4:22952922-22952941 Msa1319580:intron 25.0%
! GATGAACAATTATTATGTGA+TGG - chr8_4:22952988-22953007 Msa1319580:intron 25.0%
! TGAACAATTATTATGTGATG+GGG - chr8_4:22952990-22953009 Msa1319580:intron 25.0%
! TCTTTATTCTTCAAACAAAG+TGG - chr8_4:22953092-22953111 Msa1319580:intron 25.0%
! CTTTATTCTTCAAACAAAGT+GGG - chr8_4:22953093-22953112 Msa1319580:intron 25.0%
! TATATCTTCAAACATGACAT+TGG - chr8_4:22953121-22953140 Msa1319580:intron 25.0%
! AAGATACAAAAAAGATGCTA+GGG + chr8_4:22953626-22953645 None:intergenic 25.0%
! AAAGATACAAAAAAGATGCT+AGG + chr8_4:22953627-22953646 None:intergenic 25.0%
! ATTTACTTCATTGAATTCTC+TGG + chr8_4:22953900-22953919 None:intergenic 25.0%
! AAAATAACAAATTTCCCAAC+AGG + chr8_4:22953960-22953979 None:intergenic 25.0%
! CTTCTATCTATTTCGATATT+TGG - chr8_4:22954274-22954293 Msa1319580:intron 25.0%
!!! ATGAAGTTTCTTTTTTGTCT+TGG - chr8_4:22954344-22954363 Msa1319580:intron 25.0%
!!! TGAAGTTTCTTTTTTGTCTT+GGG - chr8_4:22954345-22954364 Msa1319580:intron 25.0%
!!! TTTTATTTCTATCAAGGGTA+AGG - chr8_4:22954519-22954538 Msa1319580:intron 25.0%
! AATAAGATGCTAATTACTGT+TGG - chr8_4:22954542-22954561 Msa1319580:intron 25.0%
! AATTCAGACTTTAATGTGAA+AGG + chr8_4:22954732-22954751 None:intergenic 25.0%
!! GAAAGATTTTATAGTATGAC+TGG + chr8_4:22954767-22954786 None:intergenic 25.0%
! CTGTAATCATATATTGAATG+GGG + chr8_4:22954801-22954820 None:intergenic 25.0%
! AATACAACACGTGAAATAAA+AGG + chr8_4:22954912-22954931 None:intergenic 25.0%
!!! GAATTGCTATTTTGTCAATT+TGG + chr8_4:22955266-22955285 None:intergenic 25.0%
! CAGCATAAAACCATTAAAAT+TGG + chr8_4:22955329-22955348 None:intergenic 25.0%
!!! CAATTTTAATGGTTTTATGC+TGG - chr8_4:22955327-22955346 Msa1319580:intron 25.0%
! TCAATATGTAAGTCTTTGAT+AGG - chr8_4:22955377-22955396 Msa1319580:intron 25.0%
! GATTGACATTCTTTAATCTA+AGG - chr8_4:22955441-22955460 Msa1319580:intron 25.0%
! TTATATTTGAGGGACTAAAT+TGG - chr8_4:22955480-22955499 Msa1319580:intron 25.0%
!! GAAAGTGAAACAACAATTTT+AGG - chr8_4:22955634-22955653 Msa1319580:intron 25.0%
! ACTAAGTTTAAGAACTTCAA+AGG + chr8_4:22955703-22955722 None:intergenic 25.0%
! AATAAGAGGGAAAAAATCAT+TGG - chr8_4:22955857-22955876 Msa1319580:intron 25.0%
! AAAAATCATTGGAAGAATGT+CGG - chr8_4:22955868-22955887 Msa1319580:intron 25.0%
!! AGAATGGATAATCACATTTT+TGG - chr8_4:22956022-22956041 Msa1319580:intron 25.0%
!! GAATGGATAATCACATTTTT+GGG - chr8_4:22956023-22956042 Msa1319580:intron 25.0%
!! TTACTATTATTTGGTTTACC+AGG - chr8_4:22956108-22956127 Msa1319580:intron 25.0%
!!! ATTTCATTGATTTTGTCATC+CGG - chr8_4:22956524-22956543 Msa1319580:CDS 25.0%
! AAGTACAGTATATACTGATA+AGG - chr8_4:22956595-22956614 Msa1319580:CDS 25.0%
! AGTACAGTATATACTGATAA+GGG - chr8_4:22956596-22956615 Msa1319580:CDS 25.0%
!!! CACTTCCCTTTTTTTTTTAT+TGG + chr8_4:22956700-22956719 None:intergenic 25.0%
! ATCGGTTTATTCACAAAACT+CGG - chr8_4:22948350-22948369 Msa1319580:intron 30.0%
TTGATGAGCTTCTTCTTTAT+TGG - chr8_4:22948456-22948475 Msa1319580:three_prime_UTR 30.0%
!!! AGTTAGTTTTTTTACACGGA+CGG - chr8_4:22948762-22948781 Msa1319580:three_prime_UTR 30.0%
!! CTCTAAGATGTCATCTTTAT+AGG + chr8_4:22948861-22948880 None:intergenic 30.0%
TTGTATAGGAATGTGATTTG+TGG - chr8_4:22949315-22949334 Msa1319580:intron 30.0%
!! ATGTTTCGAAAAGCATTTAC+AGG + chr8_4:22949475-22949494 None:intergenic 30.0%
GTCTAGCTAAATAGGATAAT+GGG + chr8_4:22949504-22949523 None:intergenic 30.0%
!!! TATTCACTGTCATTTTGAAG+TGG + chr8_4:22949708-22949727 None:intergenic 30.0%
TCATACACAAAAACTCAAGT+TGG + chr8_4:22949807-22949826 None:intergenic 30.0%
!!! AAACGATTTTGTTTTAGCCA+AGG - chr8_4:22950038-22950057 Msa1319580:intron 30.0%
!!! TATGGTTTTAAGTCTTGGTA+TGG - chr8_4:22950376-22950395 Msa1319580:CDS 30.0%
!! TTTGGATTTGTTAAGCAACA+AGG - chr8_4:22950495-22950514 Msa1319580:intron 30.0%
!! TTGGATTTGTTAAGCAACAA+GGG - chr8_4:22950496-22950515 Msa1319580:intron 30.0%
AGTAAAACTGAACTTCAACT+TGG - chr8_4:22950520-22950539 Msa1319580:intron 30.0%
CAGAAAAATGAGACAATTTG+CGG - chr8_4:22950760-22950779 Msa1319580:intron 30.0%
AACTTAAAGAACATCTTTCC+AGG + chr8_4:22950804-22950823 None:intergenic 30.0%
TATATTGTTAATTGCTTGGG+AGG + chr8_4:22950930-22950949 None:intergenic 30.0%
AAAAGCTTATCAAATCGGTT+TGG + chr8_4:22950964-22950983 None:intergenic 30.0%
ATCTAGATTGTTAAACTAGC+TGG - chr8_4:22951136-22951155 Msa1319580:intron 30.0%
AAATTATCTCCCATTTCTAC+CGG - chr8_4:22951307-22951326 Msa1319580:intron 30.0%
!!! CAACTTTTGGCTTTAGTTTA+GGG - chr8_4:22951340-22951359 Msa1319580:intron 30.0%
CTATACTCAAATGAGAAAAG+AGG - chr8_4:22951546-22951565 Msa1319580:intron 30.0%
AGGAGAAAATCCAATCAAAA+TGG - chr8_4:22951576-22951595 Msa1319580:intron 30.0%
GGAGAAAATCCAATCAAAAT+GGG - chr8_4:22951577-22951596 Msa1319580:intron 30.0%
TTTGTGTAGTTCAAAACACA+CGG - chr8_4:22951964-22951983 Msa1319580:intron 30.0%
TTCTTTCTCATATCCAATTG+AGG - chr8_4:22952117-22952136 Msa1319580:intron 30.0%
! CAATATCTGGTAGAATTTTG+AGG + chr8_4:22952239-22952258 None:intergenic 30.0%
TAGTGATCAGCTAGAAATAT+GGG - chr8_4:22952291-22952310 Msa1319580:CDS 30.0%
TTTGAACTTTAATACTTGGC+AGG - chr8_4:22952621-22952640 Msa1319580:CDS 30.0%
AACAAAAAAGGTCTTTCAAG+GGG + chr8_4:22952875-22952894 None:intergenic 30.0%
!!! TGGAAATTTTTTGAGTAGCA+AGG - chr8_4:22952942-22952961 Msa1319580:intron 30.0%
! CAAGGTTTTTGACATTTATG+TGG - chr8_4:22952960-22952979 Msa1319580:intron 30.0%
ATATAAGTTCCCAATTCTGA+AGG + chr8_4:22953153-22953172 None:intergenic 30.0%
CTTATATCTTAACTCCATGT+AGG - chr8_4:22953166-22953185 Msa1319580:intron 30.0%
! TCTTGTGAATTTTACAGCAA+TGG - chr8_4:22953197-22953216 Msa1319580:intron 30.0%
TTAGAACTAGCTGAAATTCT+AGG - chr8_4:22953267-22953286 Msa1319580:intron 30.0%
! ATTACAGTGTTTTCTGATGA+TGG - chr8_4:22953303-22953322 Msa1319580:intron 30.0%
! TTACAGTGTTTTCTGATGAT+GGG - chr8_4:22953304-22953323 Msa1319580:intron 30.0%
ATGTAATTCAGTTGAAAGAG+AGG + chr8_4:22953487-22953506 None:intergenic 30.0%
CTCTTTCAACTGAATTACAT+AGG - chr8_4:22953487-22953506 Msa1319580:intron 30.0%
AGTTGCATCGAACTTTATTA+TGG - chr8_4:22953562-22953581 Msa1319580:intron 30.0%
AAAGACACAAATATGATCCA+TGG + chr8_4:22953603-22953622 None:intergenic 30.0%
!!! TGTGTTTTAAGAGTATGTGA+TGG - chr8_4:22953724-22953743 Msa1319580:intron 30.0%
AGAGATAAAAAAGATGCTCA+GGG + chr8_4:22953761-22953780 None:intergenic 30.0%
CACCATATGAAAATACCATT+TGG - chr8_4:22954007-22954026 Msa1319580:intron 30.0%
! TGCCAAATGGTATTTTCATA+TGG + chr8_4:22954012-22954031 None:intergenic 30.0%
TAACAAAAGTGAATGCCAAA+TGG + chr8_4:22954025-22954044 None:intergenic 30.0%
TCATAGGGTAAAATCCATAT+TGG - chr8_4:22954141-22954160 Msa1319580:intron 30.0%
TAATTGGGTGAAATCAATGT+GGG + chr8_4:22954208-22954227 None:intergenic 30.0%
TTAATTGGGTGAAATCAATG+TGG + chr8_4:22954209-22954228 None:intergenic 30.0%
ACAACACTCACTCTTTAATT+GGG + chr8_4:22954223-22954242 None:intergenic 30.0%
TACAACACTCACTCTTTAAT+TGG + chr8_4:22954224-22954243 None:intergenic 30.0%
AAAGCTAATATGAAACTGCA+AGG + chr8_4:22954311-22954330 None:intergenic 30.0%
!! TGGTTTAATTTTGACCAAAC+TGG - chr8_4:22954386-22954405 Msa1319580:intron 30.0%
!! TTAATTTTGACCAAACTGGA+TGG - chr8_4:22954390-22954409 Msa1319580:intron 30.0%
! CAACACCAACAAATTTTACA+GGG + chr8_4:22954597-22954616 None:intergenic 30.0%
GCTTATGGTTTACAGAAAAA+TGG + chr8_4:22954671-22954690 None:intergenic 30.0%
! TTTTTCTGTAAACCATAAGC+AGG - chr8_4:22954671-22954690 Msa1319580:intron 30.0%
! TTGTAGATTCTGAAAGAGTA+TGG + chr8_4:22954838-22954857 None:intergenic 30.0%
ACCCAAATATACTTAACTCT+AGG - chr8_4:22954857-22954876 Msa1319580:intron 30.0%
CCCTAGAGTTAAGTATATTT+GGG + chr8_4:22954861-22954880 None:intergenic 30.0%
CCCAAATATACTTAACTCTA+GGG - chr8_4:22954858-22954877 Msa1319580:intron 30.0%
CCAAATATACTTAACTCTAG+GGG - chr8_4:22954859-22954878 Msa1319580:intron 30.0%
! ACATACTCATCCTTTAAGAA+AGG - chr8_4:22955148-22955167 Msa1319580:intron 30.0%
ATACTAAATTGGCTGTCATT+GGG + chr8_4:22955292-22955311 None:intergenic 30.0%
AATACTAAATTGGCTGTCAT+TGG + chr8_4:22955293-22955312 None:intergenic 30.0%
TGAATGCATACTGTCTATTA+TGG - chr8_4:22955604-22955623 Msa1319580:intron 30.0%
GAATGCATACTGTCTATTAT+GGG - chr8_4:22955605-22955624 Msa1319580:intron 30.0%
! TGAAACAACAATTTTAGGCA+AGG - chr8_4:22955639-22955658 Msa1319580:intron 30.0%
!!! TTCCTCATTATTTTGGTGTT+AGG + chr8_4:22955938-22955957 None:intergenic 30.0%
! TTGCACTTTCCTCATTATTT+TGG + chr8_4:22955945-22955964 None:intergenic 30.0%
! CAAAGGGTGAAAATGATTTT+GGG - chr8_4:22956240-22956259 Msa1319580:intron 30.0%
! AAAGGGTGAAAATGATTTTG+GGG - chr8_4:22956241-22956260 Msa1319580:intron 30.0%
! TGAACTTGAAGATTTTGTTG+TGG - chr8_4:22956380-22956399 Msa1319580:intron 30.0%
!!! TTTCATTGATTTTGTCATCC+GGG - chr8_4:22956525-22956544 Msa1319580:CDS 30.0%
! AAGATGAGGAATTGTGGTTT+TGG + chr8_4:22948263-22948282 None:intergenic 35.0%
! TGTGAATAAACCGATTTCAC+CGG + chr8_4:22948345-22948364 None:intergenic 35.0%
AAGAAGAAGCTCATCAATGA+CGG + chr8_4:22948453-22948472 None:intergenic 35.0%
ATAGCTTGGAATTGAACAAG+AGG + chr8_4:22948537-22948556 None:intergenic 35.0%
TTAAGGGAGGATATACTTTC+TGG - chr8_4:22948673-22948692 Msa1319580:three_prime_UTR 35.0%
TAAGGGAGGATATACTTTCT+GGG - chr8_4:22948674-22948693 Msa1319580:three_prime_UTR 35.0%
! TTTCTGGGAAGCTTAAATCT+GGG - chr8_4:22948689-22948708 Msa1319580:three_prime_UTR 35.0%
TAAATCTGGGAGTGAGATTA+AGG - chr8_4:22948702-22948721 Msa1319580:three_prime_UTR 35.0%
GATGACATCTTAGAGTGATT+TGG - chr8_4:22948866-22948885 Msa1319580:intron 35.0%
!! ACATCTTAGAGTGATTTGGT+TGG - chr8_4:22948870-22948889 Msa1319580:intron 35.0%
AGAATGTGGTTGCATTGTAT+AGG - chr8_4:22949301-22949320 Msa1319580:intron 35.0%
ACAACTTTGTAATGAGCACT+AGG - chr8_4:22949360-22949379 Msa1319580:intron 35.0%
!!! ACTGTTTTTTTGAACCGAGA+AGG - chr8_4:22949396-22949415 Msa1319580:intron 35.0%
!! GTTTGTTTAATTGGCCTTCT+CGG + chr8_4:22949413-22949432 None:intergenic 35.0%
!! TCGAAAAGCATTTACAGGAA+TGG + chr8_4:22949470-22949489 None:intergenic 35.0%
CGTCTAGCTAAATAGGATAA+TGG + chr8_4:22949505-22949524 None:intergenic 35.0%
TACTTTCAAAAATTGGAGCC+AGG + chr8_4:22949545-22949564 None:intergenic 35.0%
!! GGCTCCAATTTTTGAAAGTA+TGG - chr8_4:22949545-22949564 Msa1319580:intron 35.0%
!!! ACTGTCATTTTGAAGTGGAA+GGG + chr8_4:22949703-22949722 None:intergenic 35.0%
AAGGTGACTAATCTCAATCA+GGG + chr8_4:22949878-22949897 None:intergenic 35.0%
! TTCTCGGCCAAAACATTTTT+CGG + chr8_4:22949920-22949939 None:intergenic 35.0%
!! TCTTCTAAGGAGTTGTTTCT+CGG + chr8_4:22949936-22949955 None:intergenic 35.0%
ATCAACACATGTGTCTTCTA+AGG + chr8_4:22949949-22949968 None:intergenic 35.0%
!!! TTTGTTTTAGCCAAGGAGTT+TGG - chr8_4:22950045-22950064 Msa1319580:intron 35.0%
TTTCTAACATTCTCGTGTTG+TGG + chr8_4:22950092-22950111 None:intergenic 35.0%
!! AGCACTGAAGAAGAATGTTT+TGG - chr8_4:22950477-22950496 Msa1319580:intron 35.0%
!! TGGATTTGTTAAGCAACAAG+GGG - chr8_4:22950497-22950516 Msa1319580:intron 35.0%
CTGAACTTCAACTTGGATAT+AGG - chr8_4:22950527-22950546 Msa1319580:intron 35.0%
!! ATGATAGTTGGTGTTAATGG+TGG - chr8_4:22950668-22950687 Msa1319580:intron 35.0%
AACATCTTTCCAGGTACATA+AGG + chr8_4:22950795-22950814 None:intergenic 35.0%
! TTGATAAGCTTTTTGCTTGC+AGG - chr8_4:22950971-22950990 Msa1319580:intron 35.0%
CTGGCTTATAGATTGAAGAA+TGG - chr8_4:22950998-22951017 Msa1319580:intron 35.0%
GCTTATAGATTGAAGAATGG+AGG - chr8_4:22951001-22951020 Msa1319580:intron 35.0%
ATCTACACCAAAAAGTTCGA+TGG - chr8_4:22951073-22951092 Msa1319580:intron 35.0%
! GATATCACCATCGAACTTTT+TGG + chr8_4:22951083-22951102 None:intergenic 35.0%
TTTCCTACACAGCTTTCTAA+AGG - chr8_4:22951160-22951179 Msa1319580:intron 35.0%
TTGCAATCTGACCATTAATC+AGG - chr8_4:22951221-22951240 Msa1319580:intron 35.0%
AATTATCTCCCATTTCTACC+GGG - chr8_4:22951308-22951327 Msa1319580:intron 35.0%
!!! GCAACTTTTGGCTTTAGTTT+AGG - chr8_4:22951339-22951358 Msa1319580:intron 35.0%
!!! TCAGCCAACTGTTGTTTTAA+CGG - chr8_4:22951364-22951383 Msa1319580:intron 35.0%
AACACCGTTAAAACAACAGT+TGG + chr8_4:22951371-22951390 None:intergenic 35.0%
AGATATCCAATAATGAGGCA+GGG + chr8_4:22951424-22951443 None:intergenic 35.0%
AAGATATCCAATAATGAGGC+AGG + chr8_4:22951425-22951444 None:intergenic 35.0%
GAAACAAAAATATCCTCTGC+AGG + chr8_4:22951459-22951478 None:intergenic 35.0%
ATGAGAAAAGAGGGTCAAAT+AGG - chr8_4:22951556-22951575 Msa1319580:intron 35.0%
AAATCCAATCAAAATGGGAG+AGG - chr8_4:22951582-22951601 Msa1319580:intron 35.0%
TCAAAGATGCAACAGAGATT+TGG + chr8_4:22951759-22951778 None:intergenic 35.0%
AATCTCTGTTGCATCTTTGA+AGG - chr8_4:22951759-22951778 Msa1319580:intron 35.0%
TCATATCTTGTAAACAGGGA+TGG - chr8_4:22951887-22951906 Msa1319580:intron 35.0%
!! GTGTGTTTTGAACTACACAA+AGG + chr8_4:22951965-22951984 None:intergenic 35.0%
CATAAGTTGCTGAGAAAATG+AGG + chr8_4:22952002-22952021 None:intergenic 35.0%
GGATATGAGAAAGAATCTTG+AGG + chr8_4:22952112-22952131 None:intergenic 35.0%
!! TATTTCTAGCTGATCACTAG+CGG + chr8_4:22952290-22952309 None:intergenic 35.0%
CTAGTGATCAGCTAGAAATA+TGG - chr8_4:22952290-22952309 Msa1319580:CDS 35.0%
AAAGTGATAAATGGCAAGCT+AGG + chr8_4:22952401-22952420 None:intergenic 35.0%
CTTTCACAAGCTGTAAAAAG+AGG - chr8_4:22952525-22952544 Msa1319580:intron 35.0%
GTAAAAAGAGGAAAAGAGCT+AGG - chr8_4:22952537-22952556 Msa1319580:intron 35.0%
GGCAGGTTGTATATTAGTAT+TGG - chr8_4:22952638-22952657 Msa1319580:CDS 35.0%
GGTGTTCATGTTATATTCTC+AGG - chr8_4:22952659-22952678 Msa1319580:CDS 35.0%
! GACTAAGTTGAGAGGAAAAA+GGG + chr8_4:22952781-22952800 None:intergenic 35.0%
! TGACTAAGTTGAGAGGAAAA+AGG + chr8_4:22952782-22952801 None:intergenic 35.0%
! AGAAAGATGACTAAGTTGAG+AGG + chr8_4:22952789-22952808 None:intergenic 35.0%
ACAAGACATGAAAACCTACA+TGG + chr8_4:22953183-22953202 None:intergenic 35.0%
GTCATTTGTTTCATTCACCT+TGG - chr8_4:22953511-22953530 Msa1319580:intron 35.0%
GGTTATGAGATTATCATCCA+TGG - chr8_4:22953583-22953602 Msa1319580:intron 35.0%
TTTGTCCACATTTCGTAAGT+AGG - chr8_4:22953689-22953708 Msa1319580:intron 35.0%
GAGAGATAAAAAAGATGCTC+AGG + chr8_4:22953762-22953781 None:intergenic 35.0%
CAACAGGAAGAAGATAAACA+CGG + chr8_4:22953944-22953963 None:intergenic 35.0%
GTGTTTATCTTCTTCCTGTT+GGG - chr8_4:22953943-22953962 Msa1319580:intron 35.0%
!!! TTTCTTTTTTGTCTTGGGAC+AGG - chr8_4:22954350-22954369 Msa1319580:intron 35.0%
GGAATCCCTGTAAAATTTGT+TGG - chr8_4:22954589-22954608 Msa1319580:intron 35.0%
! CCAACACCAACAAATTTTAC+AGG + chr8_4:22954598-22954617 None:intergenic 35.0%
!! CCTGTAAAATTTGTTGGTGT+TGG - chr8_4:22954595-22954614 Msa1319580:intron 35.0%
!! AAATTTGTTGGTGTTGGTGA+AGG - chr8_4:22954601-22954620 Msa1319580:intron 35.0%
!! CAGAAAAATGGCATTGACAA+AGG + chr8_4:22954659-22954678 None:intergenic 35.0%
CCCCTAGAGTTAAGTATATT+TGG + chr8_4:22954862-22954881 None:intergenic 35.0%
AACACGTGAAATAAAAGGTC+TGG + chr8_4:22954907-22954926 None:intergenic 35.0%
ATTTCACGTGTTGTATTGCT+AGG - chr8_4:22954915-22954934 Msa1319580:intron 35.0%
GAACATTTCCTCTTTCAACT+TGG - chr8_4:22954984-22955003 Msa1319580:intron 35.0%
! GGTCAACACTTACAATTTTG+AGG - chr8_4:22955501-22955520 Msa1319580:intron 35.0%
!! CATTAAAGTGTTCTAGAGAG+AGG - chr8_4:22955752-22955771 Msa1319580:intron 35.0%
!!! TATTTTGGTGTTAGGAGTCA+GGG + chr8_4:22955930-22955949 None:intergenic 35.0%
!!! TTATTTTGGTGTTAGGAGTC+AGG + chr8_4:22955931-22955950 None:intergenic 35.0%
CTCCTAACACCAAAATAATG+AGG - chr8_4:22955933-22955952 Msa1319580:intron 35.0%
! AATCAAGGTTAAGGTACTTC+TGG + chr8_4:22956052-22956071 None:intergenic 35.0%
CGAAGGAAAAATCAAGGTTA+AGG + chr8_4:22956061-22956080 None:intergenic 35.0%
! ATTTTTCCTTCGTTGCACAT+TGG - chr8_4:22956069-22956088 Msa1319580:intron 35.0%
TCATTTAATCCATTCTTGCG+AGG - chr8_4:22956207-22956226 Msa1319580:intron 35.0%
! GCAAAGGGTGAAAATGATTT+TGG - chr8_4:22956239-22956258 Msa1319580:intron 35.0%
! AAGGGTGAAAATGATTTTGG+GGG - chr8_4:22956242-22956261 Msa1319580:intron 35.0%
CAAAGCTATTCTTGCTTTGA+AGG - chr8_4:22956267-22956286 Msa1319580:intron 35.0%
GAACATGAAGAGTGAACATA+TGG - chr8_4:22956431-22956450 Msa1319580:intron 35.0%
CTCATTGAGAAGTTGAAGAA+AGG + chr8_4:22956497-22956516 None:intergenic 35.0%
CTTTCTTCAACTTCTCAATG+AGG - chr8_4:22956495-22956514 Msa1319580:CDS 35.0%
!!! GAATTGTGGTTTTGGAGGAA+TGG + chr8_4:22948255-22948274 None:intergenic 40.0%
!!! ATGAGGAATTGTGGTTTTGG+AGG + chr8_4:22948260-22948279 None:intergenic 40.0%
GTTTATTCACAAAACTCGGC+CGG - chr8_4:22948354-22948373 Msa1319580:intron 40.0%
GATGTAGAGAAACTCTTCTC+TGG - chr8_4:22948401-22948420 Msa1319580:intron 40.0%
! GGAGAGATTGTTACGAGTTT+TGG + chr8_4:22948432-22948451 None:intergenic 40.0%
AGTTCTTGATGAACTCGAAG+AGG - chr8_4:22948499-22948518 Msa1319580:three_prime_UTR 40.0%
GATTGTGGAGAATTTAAGGG+AGG - chr8_4:22948660-22948679 Msa1319580:three_prime_UTR 40.0%
! CTTTCTGGGAAGCTTAAATC+TGG - chr8_4:22948688-22948707 Msa1319580:three_prime_UTR 40.0%
! ACTTTGACTTTGAACACACC+AGG - chr8_4:22949278-22949297 Msa1319580:intron 40.0%
TTGACAGCATCTCACAAGAT+TGG + chr8_4:22949435-22949454 None:intergenic 40.0%
ATGGAGTCGTCTAGCTAAAT+AGG + chr8_4:22949512-22949531 None:intergenic 40.0%
!!! CACTGTCATTTTGAAGTGGA+AGG + chr8_4:22949704-22949723 None:intergenic 40.0%
!! GAATCCCTAACCACTTTTCT+CGG + chr8_4:22949785-22949804 None:intergenic 40.0%
ATCTCAATCAGGGAACATGT+TGG + chr8_4:22949868-22949887 None:intergenic 40.0%
GAAGGTGACTAATCTCAATC+AGG + chr8_4:22949879-22949898 None:intergenic 40.0%
GACTACTAATCCAAACTCCT+TGG + chr8_4:22950058-22950077 None:intergenic 40.0%
GAAAGATGCTCTTACGTGAA+AGG - chr8_4:22950108-22950127 Msa1319580:intron 40.0%
CACCACAAGGATTGTATTGA+CGG + chr8_4:22950149-22950168 None:intergenic 40.0%
TCAATACAATCCTTGTGGTG+AGG - chr8_4:22950149-22950168 Msa1319580:intron 40.0%
! TCCTTTGATGGTAGTACTGT+GGG + chr8_4:22950192-22950211 None:intergenic 40.0%
ACAGTACTACCATCAAAGGA+GGG - chr8_4:22950192-22950211 Msa1319580:intron 40.0%
CCAACTATCATTATTACGGC+TGG + chr8_4:22950659-22950678 None:intergenic 40.0%
CCAGCCGTAATAATGATAGT+TGG - chr8_4:22950656-22950675 Msa1319580:intron 40.0%
!! ATAGTTGGTGTTAATGGTGG+TGG - chr8_4:22950671-22950690 Msa1319580:intron 40.0%
!! TAGTTGGTGTTAATGGTGGT+GGG - chr8_4:22950672-22950691 Msa1319580:intron 40.0%
TCTTTCCAGGTACATAAGGA+GGG + chr8_4:22950791-22950810 None:intergenic 40.0%
ATCTTTCCAGGTACATAAGG+AGG + chr8_4:22950792-22950811 None:intergenic 40.0%
!! ATTGAAGAATGGAGGTGCTA+AGG - chr8_4:22951009-22951028 Msa1319580:intron 40.0%
TACCTAACAGGCCTGATTAA+TGG + chr8_4:22951235-22951254 None:intergenic 40.0%
TGCTCATCTTTCTGCAAGTA+GGG + chr8_4:22951399-22951418 None:intergenic 40.0%
ATGCTCATCTTTCTGCAAGT+AGG + chr8_4:22951400-22951419 None:intergenic 40.0%
! TTTTATGACTCTACCTGCAG+AGG - chr8_4:22951443-22951462 Msa1319580:intron 40.0%
!! TCTTCCTCTCCCATTTTGAT+TGG + chr8_4:22951589-22951608 None:intergenic 40.0%
GAGGAAGAGTAACAACAAGT+AGG - chr8_4:22951601-22951620 Msa1319580:intron 40.0%
AAAATTCGAGCTATGCGGAA+GGG + chr8_4:22951810-22951829 None:intergenic 40.0%
GTTCGAAAATTCGAGCTATG+CGG + chr8_4:22951815-22951834 None:intergenic 40.0%
! AGCTAGAAATATGGGCTGAA+AGG - chr8_4:22952299-22952318 Msa1319580:intron 40.0%
! AAATATGGGCTGAAAGGACT+GGG - chr8_4:22952305-22952324 Msa1319580:intron 40.0%
ATTTGTACCTGCTGATGCTT+TGG + chr8_4:22952362-22952381 None:intergenic 40.0%
CAGGTTTACACACCAATTAC+AGG - chr8_4:22952678-22952697 Msa1319580:CDS 40.0%
ACACACCAATTACAGGCTAA+TGG - chr8_4:22952685-22952704 Msa1319580:CDS 40.0%
! CTCTTCCATTAGCCTGTAAT+TGG + chr8_4:22952693-22952712 None:intergenic 40.0%
GCGAGGTTTACTAGTATAAG+TGG + chr8_4:22953064-22953083 None:intergenic 40.0%
TTGGTTAGCACCTTCAGAAT+TGG - chr8_4:22953140-22953159 Msa1319580:intron 40.0%
TGGTTAGCACCTTCAGAATT+GGG - chr8_4:22953141-22953160 Msa1319580:intron 40.0%
TTCCCTACTTGTAGTGTATG+AGG - chr8_4:22953406-22953425 Msa1319580:intron 40.0%
CTCCTCATACACTACAAGTA+GGG + chr8_4:22953411-22953430 None:intergenic 40.0%
TCTCCTCATACACTACAAGT+AGG + chr8_4:22953412-22953431 None:intergenic 40.0%
TTCATTCACCTTGGACATCT+TGG - chr8_4:22953520-22953539 Msa1319580:intron 40.0%
ACAAGCCTACTTACGAAATG+TGG + chr8_4:22953697-22953716 None:intergenic 40.0%
!! AACGGTGTTACAATTCTTGC+AGG - chr8_4:22953823-22953842 Msa1319580:intron 40.0%
ATTCTTGCAGGAGATCTTAC+TGG - chr8_4:22953835-22953854 Msa1319580:intron 40.0%
! TCATTGAATTCTCTGGCTTG+TGG + chr8_4:22953893-22953912 None:intergenic 40.0%
CGTGTTTATCTTCTTCCTGT+TGG - chr8_4:22953942-22953961 Msa1319580:intron 40.0%
! TAAAGTGGTGGGATCCAATA+TGG + chr8_4:22954158-22954177 None:intergenic 40.0%
AGATGCTAATTACTGTTGGC+AGG - chr8_4:22954546-22954565 Msa1319580:intron 40.0%
TGTAAACCATAAGCAGGCTT+TGG - chr8_4:22954677-22954696 Msa1319580:intron 40.0%
ATTGAATGGGGAAGAGTGAT+AGG + chr8_4:22954789-22954808 None:intergenic 40.0%
CTAGGCATGTGTCTTCTATT+TGG - chr8_4:22954933-22954952 Msa1319580:intron 40.0%
!! GTCAGCTAAGTTTCTAGTGA+TGG - chr8_4:22955009-22955028 Msa1319580:intron 40.0%
TCTAGTGATGGCTATGTCTT+TGG - chr8_4:22955021-22955040 Msa1319580:intron 40.0%
!! GAGAGAGGAAAAGTTTTGTC+AGG - chr8_4:22955767-22955786 Msa1319580:intron 40.0%
GTGCAACGAAGGAAAAATCA+AGG + chr8_4:22956067-22956086 None:intergenic 40.0%
ATATAGCCAATGTGCAACGA+AGG + chr8_4:22956078-22956097 None:intergenic 40.0%
TTCGGACAAAACGACAATGA+CGG - chr8_4:22956335-22956354 Msa1319580:intron 40.0%
! TTCAAGTTCAATGCCAAGAG+TGG + chr8_4:22956370-22956389 None:intergenic 40.0%
ACGAAGGTTTCACGAATCTT+AGG - chr8_4:22956744-22956763 Msa1319580:CDS 40.0%
AAGGTTTCACGAATCTTAGG+TGG - chr8_4:22956747-22956766 Msa1319580:CDS 40.0%
! GGTCAGGAAAGGGTTTTTAT+AGG + chr8_4:22956774-22956793 None:intergenic 40.0%
!! CGTATTTTTCGGTCAGGAAA+GGG + chr8_4:22956784-22956803 None:intergenic 40.0%
!! TCGTATTTTTCGGTCAGGAA+AGG + chr8_4:22956785-22956804 None:intergenic 40.0%
TTCCTGACCGAAAAATACGA+CGG - chr8_4:22956785-22956804 Msa1319580:five_prime_UTR 40.0%
! CCACTAACCGTCGTATTTTT+CGG + chr8_4:22956795-22956814 None:intergenic 40.0%
GTGGTGAAGATGAGGAATTG+TGG + chr8_4:22948269-22948288 None:intergenic 45.0%
!! AGGGGGGTTTGGTTTGAAAT+GGG + chr8_4:22948292-22948311 None:intergenic 45.0%
! GAATAAACCGATTTCACCGG+CGG + chr8_4:22948342-22948361 None:intergenic 45.0%
ATCACAGTCAGTCATGTGTG+TGG - chr8_4:22949015-22949034 Msa1319580:intron 45.0%
TTGAACACACCAGGAGAATG+TGG - chr8_4:22949287-22949306 Msa1319580:intron 45.0%
ACAATGCAACCACATTCTCC+TGG + chr8_4:22949299-22949318 None:intergenic 45.0%
GACTCCATAAATCAGAAGCC+TGG - chr8_4:22949524-22949543 Msa1319580:intron 45.0%
TGCAAGCATCACTAACTGCT+AGG - chr8_4:22949599-22949618 Msa1319580:intron 45.0%
TGAAGTGGAAGGGTCTTGAA+AGG + chr8_4:22949693-22949712 None:intergenic 45.0%
AGCAACCGAGAAAAGTGGTT+AGG - chr8_4:22949777-22949796 Msa1319580:intron 45.0%
GCAACCGAGAAAAGTGGTTA+GGG - chr8_4:22949778-22949797 Msa1319580:intron 45.0%
TATTGACGGAGATCGAACCA+GGG + chr8_4:22950135-22950154 None:intergenic 45.0%
CTCCGTCAATACAATCCTTG+TGG - chr8_4:22950144-22950163 Msa1319580:intron 45.0%
TCCTTGTGGTGAGGCTAAAT+TGG - chr8_4:22950158-22950177 Msa1319580:intron 45.0%
ACCAATTTAGCCTCACCACA+AGG + chr8_4:22950162-22950181 None:intergenic 45.0%
! CTTTGATGGTAGTACTGTGG+GGG + chr8_4:22950190-22950209 None:intergenic 45.0%
! CCTTTGATGGTAGTACTGTG+GGG + chr8_4:22950191-22950210 None:intergenic 45.0%
! CTCCTTTGATGGTAGTACTG+TGG + chr8_4:22950193-22950212 None:intergenic 45.0%
CACAGTACTACCATCAAAGG+AGG - chr8_4:22950191-22950210 Msa1319580:intron 45.0%
CAGTACTACCATCAAAGGAG+GGG - chr8_4:22950193-22950212 Msa1319580:intron 45.0%
TGGTGGGAAGACAACATCTT+TGG - chr8_4:22950688-22950707 Msa1319580:intron 45.0%
GGTGGGAAGACAACATCTTT+GGG - chr8_4:22950689-22950708 Msa1319580:intron 45.0%
GGAAGACAACATCTTTGGGT+AGG - chr8_4:22950693-22950712 Msa1319580:intron 45.0%
TGTTTCCCTCCTTATGTACC+TGG - chr8_4:22950783-22950802 Msa1319580:intron 45.0%
TGTTAATTGCTTGGGAGGAC+AGG + chr8_4:22950925-22950944 None:intergenic 45.0%
! CTTTTTGCTTGCAGGAAAGC+TGG - chr8_4:22950979-22950998 Msa1319580:intron 45.0%
! CAGCCTTTAGAAAGCTGTGT+AGG + chr8_4:22951166-22951185 None:intergenic 45.0%
GACCATTAATCAGGCCTGTT+AGG - chr8_4:22951230-22951249 Msa1319580:intron 45.0%
TCATTGCTCCCGGTAGAAAT+GGG + chr8_4:22951319-22951338 None:intergenic 45.0%
CAAAAGTTGCTCATTGCTCC+CGG + chr8_4:22951329-22951348 None:intergenic 45.0%
AGCATTCCCTGCCTCATTAT+TGG - chr8_4:22951415-22951434 Msa1319580:intron 45.0%
TGAGTATAGTGCAGCTTCCA+AGG + chr8_4:22951535-22951554 None:intergenic 45.0%
GAAAATTCGAGCTATGCGGA+AGG + chr8_4:22951811-22951830 None:intergenic 45.0%
TGCTGAGAAAATGAGGCATG+TGG + chr8_4:22951995-22952014 None:intergenic 45.0%
TACCAGATATTGTTGGCAGC+TGG - chr8_4:22952247-22952266 Msa1319580:CDS 45.0%
! GAAATATGGGCTGAAAGGAC+TGG - chr8_4:22952304-22952323 Msa1319580:intron 45.0%
! GAGAAATCCAAAGCATCAGC+AGG - chr8_4:22952352-22952371 Msa1319580:intron 45.0%
GCTGTTGCTAAAGTAGTTGC+TGG - chr8_4:22952731-22952750 Msa1319580:intron 45.0%
!! GGGTCAAAAGCGCTTACATT+GGG + chr8_4:22952761-22952780 None:intergenic 45.0%
!! AGGGTCAAAAGCGCTTACAT+TGG + chr8_4:22952762-22952781 None:intergenic 45.0%
! GAATAAAGAGAGCACAAGCG+AGG + chr8_4:22953081-22953100 None:intergenic 45.0%
GTCAAGAACCAAGATGTCCA+AGG + chr8_4:22953531-22953550 None:intergenic 45.0%
! GGACATCTTGGTTCTTGACA+CGG - chr8_4:22953532-22953551 Msa1319580:intron 45.0%
!! GAGATCTTACTGGTTCTGGA+TGG - chr8_4:22953845-22953864 Msa1319580:intron 45.0%
ATACGGGTACGATACGATAC+GGG + chr8_4:22954102-22954121 None:intergenic 45.0%
GATACGGGTACGATACGATA+CGG + chr8_4:22954103-22954122 None:intergenic 45.0%
! GGATTTTACCCTATGAAGCC+CGG + chr8_4:22954137-22954156 None:intergenic 45.0%
TTGGATCCCACCACTTTATG+TGG - chr8_4:22954160-22954179 Msa1319580:intron 45.0%
TGGATCCCACCACTTTATGT+GGG - chr8_4:22954161-22954180 Msa1319580:intron 45.0%
GAAATGGGTCCCACATAAAG+TGG + chr8_4:22954173-22954192 None:intergenic 45.0%
! GGGTCCTACACTTTGGAAAT+GGG + chr8_4:22954188-22954207 None:intergenic 45.0%
! TGGGTCCTACACTTTGGAAA+TGG + chr8_4:22954189-22954208 None:intergenic 45.0%
TCAATGTGGGTCCTACACTT+TGG + chr8_4:22954195-22954214 None:intergenic 45.0%
! TTTTGTCTTGGGACAGGTTG+TGG - chr8_4:22954356-22954375 Msa1319580:intron 45.0%
TTTGTCTTGGGACAGGTTGT+GGG - chr8_4:22954357-22954376 Msa1319580:intron 45.0%
TCTTGCAGAACCATCCAGTT+TGG + chr8_4:22954403-22954422 None:intergenic 45.0%
! AAACTGGATGGTTCTGCAAG+AGG - chr8_4:22954402-22954421 Msa1319580:intron 45.0%
ACAAAGGCCTCTGCATCAAA+GGG + chr8_4:22954643-22954662 None:intergenic 45.0%
CACATACCAAAGCCTGCTTA+TGG + chr8_4:22954686-22954705 None:intergenic 45.0%
! GCTGACATCCAAGTTGAAAG+AGG + chr8_4:22954995-22955014 None:intergenic 45.0%
TTCTGAATCGTAGCATAGCC+TGG + chr8_4:22956129-22956148 None:intergenic 45.0%
CGAATATGCAGAGCAACACT+AGG - chr8_4:22956162-22956181 Msa1319580:intron 45.0%
! TTTTCACCCTTTGCGAAGCT+TGG + chr8_4:22956233-22956252 None:intergenic 45.0%
TAACCCCTTTGCATGCTTTG+TGG - chr8_4:22956304-22956323 Msa1319580:intron 45.0%
CAACCACAAAGCATGCAAAG+GGG + chr8_4:22956310-22956329 None:intergenic 45.0%
CCAACCACAAAGCATGCAAA+GGG + chr8_4:22956311-22956330 None:intergenic 45.0%
TGCTTTGTGGTTGGCAGTTT+CGG - chr8_4:22956317-22956336 Msa1319580:intron 45.0%
TCGGACAAAACGACAATGAC+GGG - chr8_4:22956336-22956355 Msa1319580:intron 45.0%
ACGGGGTTTATTTCCACTCT+TGG - chr8_4:22956354-22956373 Msa1319580:intron 45.0%
CCTTGTTCGAAAGTTGTTCC+CGG + chr8_4:22956546-22956565 None:intergenic 45.0%
!! CATGAGAGTATTGCTCACGA+AGG - chr8_4:22956728-22956747 Msa1319580:CDS 45.0%
!! AACCGTCGTATTTTTCGGTC+AGG + chr8_4:22956790-22956809 None:intergenic 45.0%
CCGAAAAATACGACGGTTAG+TGG - chr8_4:22956792-22956811 Msa1319580:five_prime_UTR 45.0%
!! ATTAAAATGTTTAATTAAAT+AGG + chr8_4:22948942-22948961 None:intergenic 5.0%
!! ATTAAAAAAAAAAAATTTGT+TGG + chr8_4:22950306-22950325 None:intergenic 5.0%
!!! AATAAAATTTTAAAAAAAAC+GGG + chr8_4:22955120-22955139 None:intergenic 5.0%
GCTGAAGCACACAGCAGAAA+TGG - chr8_4:22948196-22948215 Msa1319580:three_prime_UTR 50.0%
!! TTTTGGAGGAATGGAGAGGC+GGG + chr8_4:22948246-22948265 None:intergenic 50.0%
!!! GTTTTGGAGGAATGGAGAGG+CGG + chr8_4:22948247-22948266 None:intergenic 50.0%
!!! GTGGTTTTGGAGGAATGGAG+AGG + chr8_4:22948250-22948269 None:intergenic 50.0%
GAAATGGGGTGGTGAAGATG+AGG + chr8_4:22948277-22948296 None:intergenic 50.0%
!! GGGTTTGGTTTGAAATGGGG+TGG + chr8_4:22948288-22948307 None:intergenic 50.0%
!! GGGGGGTTTGGTTTGAAATG+GGG + chr8_4:22948291-22948310 None:intergenic 50.0%
!! GAGGGGGGTTTGGTTTGAAA+TGG + chr8_4:22948293-22948312 None:intergenic 50.0%
GGAGCCAGGCTTCTGATTTA+TGG + chr8_4:22949531-22949550 None:intergenic 50.0%
GCTGAAGCAACCGAGAAAAG+TGG - chr8_4:22949772-22949791 Msa1319580:intron 50.0%
TCTCGTGTTGTGGATCAGCT+TGG + chr8_4:22950082-22950101 None:intergenic 50.0%
! GTATTGACGGAGATCGAACC+AGG + chr8_4:22950136-22950155 None:intergenic 50.0%
CCCCACAGTACTACCATCAA+AGG - chr8_4:22950188-22950207 Msa1319580:intron 50.0%
TCTTCAGTCCCCTCCTTTGA+TGG + chr8_4:22950204-22950223 None:intergenic 50.0%
CTCATTGCTCCCGGTAGAAA+TGG + chr8_4:22951320-22951339 None:intergenic 50.0%
! CGGGAGCAATGAGCAACTTT+TGG - chr8_4:22951327-22951346 Msa1319580:intron 50.0%
GTTATCCCAGCAAACGAGGT+AGG + chr8_4:22951715-22951734 None:intergenic 50.0%
CAGTGTTATCCCAGCAAACG+AGG + chr8_4:22951719-22951738 None:intergenic 50.0%
CACCAGCTGCCAACAATATC+TGG + chr8_4:22952252-22952271 None:intergenic 50.0%
GACTGGGTGTGAGATTGTTG+TGG - chr8_4:22952321-22952340 Msa1319580:intron 50.0%
!! ACAGCTTGTGAAAGCACTGC+AGG + chr8_4:22952519-22952538 None:intergenic 50.0%
GCAAGCAATGCTATCGCTTC+AGG + chr8_4:22953360-22953379 None:intergenic 50.0%
!! GCAGGAGATCTTACTGGTTC+TGG - chr8_4:22953841-22953860 Msa1319580:intron 50.0%
!! CTGGTTCTGGATGGAACTAC+TGG - chr8_4:22953854-22953873 Msa1319580:intron 50.0%
ACTACGTATCCGGGCTTCAT+AGG - chr8_4:22954125-22954144 Msa1319580:intron 50.0%
CTACGTATCCGGGCTTCATA+GGG - chr8_4:22954126-22954145 Msa1319580:intron 50.0%
TGGGTCCCACATAAAGTGGT+GGG + chr8_4:22954169-22954188 None:intergenic 50.0%
ATGGGTCCCACATAAAGTGG+TGG + chr8_4:22954170-22954189 None:intergenic 50.0%
GGGACCCATTTCCAAAGTGT+AGG - chr8_4:22954181-22954200 Msa1319580:intron 50.0%
TTACTGTTGGCAGGTCAGTG+TGG - chr8_4:22954555-22954574 Msa1319580:intron 50.0%
!! GTCAGTGTGGTTGATGAGCT+TGG - chr8_4:22954568-22954587 Msa1319580:intron 50.0%
CCTCTGCATCAAAGGGTTGA+AGG + chr8_4:22954636-22954655 None:intergenic 50.0%
CCTTCAACCCTTTGATGCAG+AGG - chr8_4:22954633-22954652 Msa1319580:intron 50.0%
GACAAAGGCCTCTGCATCAA+AGG + chr8_4:22954644-22954663 None:intergenic 50.0%
CCCTTTGCATGCTTTGTGGT+TGG - chr8_4:22956308-22956327 Msa1319580:intron 50.0%
GCCAACCACAAAGCATGCAA+AGG + chr8_4:22956312-22956331 None:intergenic 50.0%
CGGACAAAACGACAATGACG+GGG - chr8_4:22956337-22956356 Msa1319580:intron 50.0%
CCGGGAACAACTTTCGAACA+AGG - chr8_4:22956543-22956562 Msa1319580:CDS 50.0%
TGAACCGGGTTCGAGATGAG+GGG + chr8_4:22948310-22948329 None:intergenic 55.0%
GTGAACCGGGTTCGAGATGA+GGG + chr8_4:22948311-22948330 None:intergenic 55.0%
TGTGAACCGGGTTCGAGATG+AGG + chr8_4:22948312-22948331 None:intergenic 55.0%
! TAAACCGATTTCACCGGCGG+CGG + chr8_4:22948339-22948358 None:intergenic 55.0%
GCTCTTACGTGAAAGGTCCC+TGG - chr8_4:22950115-22950134 Msa1319580:intron 55.0%
AGCAAACGAGGTAGGCTACG+TGG + chr8_4:22951707-22951726 None:intergenic 55.0%
ACGTAGCCTACCTCGTTTGC+TGG - chr8_4:22951706-22951725 Msa1319580:intron 55.0%
CGTAGCCTACCTCGTTTGCT+GGG - chr8_4:22951707-22951726 Msa1319580:intron 55.0%
CGGAAGGGCTAGACTAGTGA+AGG + chr8_4:22951795-22951814 None:intergenic 55.0%
AAAGGTCTTTCAAGGGGCCG+TGG + chr8_4:22952869-22952888 None:intergenic 55.0%
TGCTATCGCTTCAGGTCACG+TGG + chr8_4:22953352-22953371 None:intergenic 55.0%
CCGGATACGTAGTGCGATAC+GGG + chr8_4:22954118-22954137 None:intergenic 55.0%
CCCGTATCGCACTACGTATC+CGG - chr8_4:22954115-22954134 Msa1319580:intron 55.0%
CCCGGATACGTAGTGCGATA+CGG + chr8_4:22954119-22954138 None:intergenic 55.0%
CCGTATCGCACTACGTATCC+GGG - chr8_4:22954116-22954135 Msa1319580:intron 55.0%
GGACAGGTTGTGGGTGTAAC+TGG - chr8_4:22954366-22954385 Msa1319580:intron 55.0%
! CTGGATGGTTCTGCAAGAGG+TGG - chr8_4:22954405-22954424 Msa1319580:intron 55.0%
TTCTGCAAGAGGTGGCTGTG+TGG - chr8_4:22954413-22954432 Msa1319580:intron 55.0%
GCAGAGCAACACTAGGTCAC+AGG - chr8_4:22956169-22956188 Msa1319580:intron 55.0%
GAAGCTTGGCCTCGCAAGAA+TGG + chr8_4:22956219-22956238 None:intergenic 55.0%
!! TGCTTTGAAGGCAGCTCAGC+TGG - chr8_4:22956279-22956298 Msa1319580:intron 55.0%
GAGGCGGGTGAATGAAGCAG+AGG + chr8_4:22948231-22948250 None:intergenic 60.0%
GGTTCGAGATGAGGGGGGTT+TGG + chr8_4:22948303-22948322 None:intergenic 60.0%
AACCCCCCTCATCTCGAACC+CGG - chr8_4:22948303-22948322 Msa1319580:intron 60.0%
AACCGGGTTCGAGATGAGGG+GGG + chr8_4:22948308-22948327 None:intergenic 60.0%
GAACCGGGTTCGAGATGAGG+GGG + chr8_4:22948309-22948328 None:intergenic 60.0%
TGCGAGGCCAAGCTTCGCAA+AGG - chr8_4:22956223-22956242 Msa1319580:intron 60.0%
GCGAGGCCAAGCTTCGCAAA+GGG - chr8_4:22956224-22956243 Msa1319580:intron 60.0%
TGCTCCGCCGCCGGTGAAAT+CGG - chr8_4:22948332-22948351 Msa1319580:intron 65.0%
GGCGGCGGAGCATGTGAACC+GGG + chr8_4:22948324-22948343 None:intergenic 70.0%
CGGCGGCGGAGCATGTGAAC+CGG + chr8_4:22948325-22948344 None:intergenic 70.0%
CGGTTCACATGCTCCGCCGC+CGG - chr8_4:22948323-22948342 Msa1319580:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 22948151 22956840 22948151 ID=Msa1319580;Name=Msa1319580
chr8_4 mRNA 22948151 22956840 22948151 ID=Msa1319580-mRNA-1;Parent=Msa1319580;Name=Msa1319580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=64|0.90|1|1|0.81|0.75|12|580|331
chr8_4 exon 22948151 22948278 22948151 ID=Msa1319580-mRNA-1:exon:8099;Parent=Msa1319580-mRNA-1
chr8_4 exon 22948427 22948861 22948427 ID=Msa1319580-mRNA-1:exon:8098;Parent=Msa1319580-mRNA-1
chr8_4 exon 22950293 22950423 22950293 ID=Msa1319580-mRNA-1:exon:8097;Parent=Msa1319580-mRNA-1
chr8_4 exon 22950557 22950619 22950557 ID=Msa1319580-mRNA-1:exon:8096;Parent=Msa1319580-mRNA-1
chr8_4 exon 22951078 22951146 22951078 ID=Msa1319580-mRNA-1:exon:8095;Parent=Msa1319580-mRNA-1
chr8_4 exon 22952228 22952310 22952228 ID=Msa1319580-mRNA-1:exon:8094;Parent=Msa1319580-mRNA-1
chr8_4 exon 22952400 22952468 22952400 ID=Msa1319580-mRNA-1:exon:8093;Parent=Msa1319580-mRNA-1
chr8_4 exon 22952618 22952738 22952618 ID=Msa1319580-mRNA-1:exon:8092;Parent=Msa1319580-mRNA-1
chr8_4 exon 22953961 22953998 22953961 ID=Msa1319580-mRNA-1:exon:8091;Parent=Msa1319580-mRNA-1
chr8_4 exon 22954281 22954339 22954281 ID=Msa1319580-mRNA-1:exon:8090;Parent=Msa1319580-mRNA-1
chr8_4 exon 22954443 22954516 22954443 ID=Msa1319580-mRNA-1:exon:8089;Parent=Msa1319580-mRNA-1
chr8_4 exon 22956471 22956840 22956471 ID=Msa1319580-mRNA-1:exon:8088;Parent=Msa1319580-mRNA-1
chr8_4 five_prime_UTR 22956777 22956840 22956777 ID=Msa1319580-mRNA-1:five_prime_utr;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22956471 22956776 22956471 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22954443 22954516 22954443 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22954281 22954339 22954281 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22953961 22953998 22953961 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22952618 22952738 22952618 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22952400 22952468 22952400 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22952228 22952310 22952228 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22951078 22951146 22951078 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22950557 22950619 22950557 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 CDS 22950310 22950423 22950310 ID=Msa1319580-mRNA-1:cds;Parent=Msa1319580-mRNA-1
chr8_4 three_prime_UTR 22950293 22950309 22950293 ID=Msa1319580-mRNA-1:three_prime_utr;Parent=Msa1319580-mRNA-1
chr8_4 three_prime_UTR 22948427 22948861 22948427 ID=Msa1319580-mRNA-1:three_prime_utr;Parent=Msa1319580-mRNA-1
chr8_4 three_prime_UTR 22948151 22948278 22948151 ID=Msa1319580-mRNA-1:three_prime_utr;Parent=Msa1319580-mRNA-1
Gene Sequence

>Msa1319580

ATGGCTACAACTGCCTCTGCTTCATTCACCCGCCTCTCCATTCCTCCAAAACCACAATTCCTCATCTTCACCACCCCATTTCAAACCAAACCCCCCTCATCTCGAACCCGGTTCACATGCTCCGCCGCCGGTGAAATCGGTTTATTCACAAAACTCGGCCGGTTACTAAAAGAAAAAGCAAAAAGCGATGTAGAGAAACTCTTCTCTGGTTTCTCCAAAACTCGTAACAATCTCTCCGTCATTGATGAGCTTCTTCTTTATTGGAATCTCTCTGATACTGATAGAGTTCTTGATGAACTCGAAGAGGAAGCACTGAAGAAGAATGTTTTGGATTTGTTAAGCAACAAGGGGAGTAAAACTGAACTTCAACTTGGATATAGGAAACCAGCCGTAATAATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGGAGGTGCTAAGATATTGTTGGCAGCTGGTGATACATTCAGAGCAGCCGCTAGTGATCAGCTAGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCTGAGAAATCCAAAGCATCAGCAGTGCTTTCACAAGCTGTAAAAAGAGGAAAAGAGCTAGGTTATGATATTGTATTATGTGATACATCTGGACGTTTACACACCAATTACAGGCTAATGGAAGAGTTAATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTGCTGGTGCACCCAATGAGATCTTACTGGTTCTGGATGGAACTACTGGTTTGAATATGTTGCCACAAGCCAGAGAATTCAATGAAGTTGTGGGTGTAACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCAAGAGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTTGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCAGAGGCCTTTGTCAATGCCATTTTTCTGTAA

Protein sequence

>Msa1319580

MATTASASFTRLSIPPKPQFLIFTTPFQTKPPSSRTRFTCSAAGEIGLFTKLGRLLKEKAKSDVEKLFSGFSKTRNNLSVIDELLLYWNLSDTDRVLDELEEEALKKNVLDLLSNKGSKTELQLGYRKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRGKELGYDIVLCDTSGRLHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFL*