AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0564930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564930 MtrunA17_Chr8g0378941 96.307 352 12 1 1 351 1 352 0.0 696
Msa0564930 MtrunA17_Chr1g0212371 34.483 203 117 5 155 344 120 319 4.22e-30 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564930 AT4G28590.1 54.545 330 111 6 25 343 22 323 3.06e-117 343
Msa0564930 AT2G31840.1 41.436 181 89 5 173 339 152 329 9.92e-33 125
Msa0564930 AT2G31840.2 41.436 181 89 5 173 339 152 329 9.92e-33 125

Find 109 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTACTTACTATAAT+TGG 0.049381 4_1:+65727390 None:intergenic
GAGGACATTCTCGAACTTTC+AGG 0.153863 4_1:+65725504 None:intergenic
TCTCCTACAACATTCTTAAT+TGG 0.208516 4_1:+65726680 None:intergenic
GTTTCTATCATCCTTATTAA+TGG 0.262268 4_1:+65727054 None:intergenic
ATTAACTACTTACTATAATT+GGG 0.280895 4_1:+65727391 None:intergenic
AAGGGGAGACTGAGGATAAC+TGG 0.300402 4_1:-65726634 Msa0564930:CDS
CGACCGCGCCTTGGCTTCCT+TGG 0.304224 4_1:+65727004 None:intergenic
CTATCATCATTGCTGCGTTT+TGG 0.305949 4_1:+65726836 None:intergenic
TCAATTTCTATTCAACAAAA+TGG 0.319152 4_1:-65727299 Msa0564930:exon
AAGAATCTCGAATGAGAAAA+AGG 0.321782 4_1:+65727238 None:intergenic
GGTAAGGTAAGCATATTCTA+TGG 0.333317 4_1:+65727540 None:intergenic
TGTAGGATTAGGTTCGGGTT+CGG 0.333557 4_1:+65727132 None:intergenic
GTAGGATTAGGTTCGGGTTC+GGG 0.335867 4_1:+65727133 None:intergenic
GGCTTCCTTGGAATTGTTGT+TGG 0.353522 4_1:+65727016 None:intergenic
TGAATAGAAATTGAAAACTA+TGG 0.357982 4_1:+65727308 None:intergenic
GCAACAAAATGCGGGTGCTT+TGG 0.363915 4_1:-65726912 Msa0564930:CDS
TCCACAGGGCAAATGATAAC+TGG 0.371102 4_1:-65725892 Msa0564930:intron
TTTGGATGTAGGATTAGGTT+CGG 0.375242 4_1:+65727126 None:intergenic
AGAAACGAGCTAGGAGAAAG+AGG 0.387324 4_1:-65727513 Msa0564930:five_prime_UTR
ACAGAACATGATATTGATAT+AGG 0.402346 4_1:+65727178 None:intergenic
AGCTACAACAAGGTATATAT+TGG 0.405223 4_1:-65727459 Msa0564930:five_prime_UTR
CATCCAATTAAGAATGTTGT+AGG 0.407757 4_1:-65726683 Msa0564930:CDS
GGTGCAGGAGATCAATTGTT+TGG 0.409092 4_1:-65726612 Msa0564930:CDS
AGAGCTGGAGAAAGCAATAA+AGG 0.432889 4_1:-65725858 Msa0564930:CDS
TGGAGAGAAGGCGGTGATTG+AGG 0.436030 4_1:-65726777 Msa0564930:CDS
TTGGAGGCATAAGAGCTGTT+TGG 0.439142 4_1:+65727269 None:intergenic
GCCTGCATGGATTGATGATA+AGG 0.442007 4_1:-65725235 Msa0564930:CDS
TAGAAATTGAAAACTATGGT+TGG 0.446812 4_1:+65727312 None:intergenic
GGAAGATGGTGGTGGAGAGA+AGG 0.455976 4_1:-65726789 Msa0564930:CDS
CCTCGTAGAAACAAAATTTG+AGG 0.457143 4_1:+65725485 None:intergenic
AGGACATTCTCGAACTTTCA+GGG 0.462386 4_1:+65725505 None:intergenic
ATGATGGTGCTGAAATTGAT+TGG 0.468138 4_1:-65726658 Msa0564930:CDS
AGAAAGCAATAAAGGTGTAC+TGG 0.471230 4_1:-65725850 Msa0564930:CDS
AAGATGGTGTACAGGGAGAA+AGG 0.474258 4_1:-65725458 Msa0564930:intron
TGAGGAGGAGGTGGAAGAAG+AGG 0.474972 4_1:-65726810 Msa0564930:CDS
AGATGGTGTGACCATTAATA+AGG 0.476275 4_1:-65727065 Msa0564930:CDS
AGAACACGTTTGCTGCAATT+CGG 0.476704 4_1:-65726934 Msa0564930:CDS
AGAAATTGAAAACTATGGTT+GGG 0.477543 4_1:+65727313 None:intergenic
AGAGAGTGAGAGCTGGCCAT+TGG 0.480727 4_1:-65726753 Msa0564930:CDS
AATGTGATGAGTAGATAAAG+TGG 0.489173 4_1:+65727207 None:intergenic
CTAAAGATCGGTTACCTCCC+AGG 0.492013 4_1:-65725823 Msa0564930:CDS
TTGGATGTAGGATTAGGTTC+GGG 0.492104 4_1:+65727127 None:intergenic
GAGGGAATAAGATGGTGTAC+AGG 0.495962 4_1:-65725466 Msa0564930:CDS
CATTGGATACGGATGTCGGG+TGG 0.496433 4_1:-65726736 Msa0564930:CDS
ACTCAGAACTGCGGATGAGC+TGG 0.496745 4_1:-65725295 Msa0564930:CDS
GAAGAAGAGGAAGATGGTGG+TGG 0.502013 4_1:-65726797 Msa0564930:CDS
CAACGGTAGTTAACTACCGC+TGG 0.502229 4_1:-65727623 Msa0564930:five_prime_UTR
TGATGGTGCTGAAATTGATT+GGG 0.506693 4_1:-65726657 Msa0564930:CDS
GCAATTCGGCAACAAAATGC+GGG 0.507031 4_1:-65726920 Msa0564930:CDS
TGGCCATTGGATACGGATGT+CGG 0.507521 4_1:-65726740 Msa0564930:CDS
TGAGAGCTGGCCATTGGATA+CGG 0.507959 4_1:-65726747 Msa0564930:CDS
GGCCATTGGATACGGATGTC+GGG 0.512837 4_1:-65726739 Msa0564930:CDS
AAGAAGCTTCTGAGAAGAGA+AGG 0.518975 4_1:+65727434 None:intergenic
GACTGAGGATAACTGGGTGC+AGG 0.519180 4_1:-65726627 Msa0564930:CDS
TGATAGTGATGAGGAGGAGG+TGG 0.520072 4_1:-65726819 Msa0564930:CDS
ACAAGTACGATTAAAGGGCT+AGG 0.524252 4_1:+65726566 None:intergenic
GGAGATCAATTGTTTGGAGT+GGG 0.524391 4_1:-65726606 Msa0564930:CDS
TTAACTACTTACTATAATTG+GGG 0.524499 4_1:+65727392 None:intergenic
CATTAACATCGAGAAAGACT+TGG 0.524986 4_1:-65725534 Msa0564930:CDS
GTACGATTAAAGGGCTAGGA+TGG 0.528482 4_1:+65726570 None:intergenic
GAAACGAGCTAGGAGAAAGA+GGG 0.529344 4_1:-65727512 Msa0564930:five_prime_UTR
GTGCTGAAATTGATTGGGAA+GGG 0.532847 4_1:-65726652 Msa0564930:CDS
AAAAGTTTCCAACGTGGAGA+TGG 0.538979 4_1:-65727082 Msa0564930:CDS
AAGAATGTTGTAGGAGATGA+TGG 0.540394 4_1:-65726674 Msa0564930:CDS
TGCTGAAATTGATTGGGAAG+GGG 0.540914 4_1:-65726651 Msa0564930:CDS
CAACAATTCCAAGGAAGCCA+AGG 0.541191 4_1:-65727012 Msa0564930:CDS
GAGGTGGAAGAAGAGGAAGA+TGG 0.541968 4_1:-65726803 Msa0564930:CDS
AGATGGTGGTGGAGAGAAGG+CGG 0.543685 4_1:-65726786 Msa0564930:CDS
ATTGGATACGGATGTCGGGT+GGG 0.544540 4_1:-65726735 Msa0564930:CDS
TGCAATTCGGCAACAAAATG+CGG 0.545718 4_1:-65726921 Msa0564930:CDS
TTGGATACGGATGTCGGGTG+GGG 0.546849 4_1:-65726734 Msa0564930:CDS
TGATTGGGAAGGGGAGACTG+AGG 0.550882 4_1:-65726642 Msa0564930:CDS
GTGGAAGAAGAGGAAGATGG+TGG 0.551552 4_1:-65726800 Msa0564930:CDS
TTAATGTCACATGGTCCTTG+TGG 0.558893 4_1:-65725184 Msa0564930:three_prime_UTR
GCCTTATCATCAATCCATGC+AGG 0.566180 4_1:+65725234 None:intergenic
GTTTCTACGAGGGAATAAGA+TGG 0.569954 4_1:-65725474 Msa0564930:CDS
GAATCATAAAGATATAATGA+AGG 0.574940 4_1:-65726888 Msa0564930:CDS
TGATGATAGTGATGAGGAGG+AGG 0.575455 4_1:-65726822 Msa0564930:CDS
AACGGTAGTTAACTACCGCT+GGG 0.578258 4_1:-65727622 Msa0564930:five_prime_UTR
AATTTCCAACAACAATTCCA+AGG 0.578397 4_1:-65727021 Msa0564930:CDS
TTGAGGAAGAGAGTGAGAGC+TGG 0.578485 4_1:-65726760 Msa0564930:CDS
AGGGGAGACTGAGGATAACT+GGG 0.579701 4_1:-65726633 Msa0564930:CDS
AGGAGATCAATTGTTTGGAG+TGG 0.582911 4_1:-65726607 Msa0564930:CDS
CAATTAATAACGTAAATACA+AGG 0.583174 4_1:+65725212 None:intergenic
CACCCGACATCCGTATCCAA+TGG 0.587765 4_1:+65726737 None:intergenic
GGTGCTGAAATTGATTGGGA+AGG 0.593647 4_1:-65726653 Msa0564930:CDS
ACTACCGTTGGTTAAAGCGC+CGG 0.596277 4_1:+65727636 None:intergenic
ACAATGCAAAGAAGCCTGCA+TGG 0.600174 4_1:-65725248 Msa0564930:CDS
TAAAGATCGGTTACCTCCCA+GGG 0.600728 4_1:-65725822 Msa0564930:intron
CAATGATGATAGTGATGAGG+AGG 0.605683 4_1:-65726825 Msa0564930:CDS
CAGCGGTAGTTAACTACCGT+TGG 0.607189 4_1:+65727624 None:intergenic
GATATAATGAAGGACAGTGT+CGG 0.611630 4_1:-65726878 Msa0564930:CDS
TGTACTGGAGTGCTAAAGAT+CGG 0.614574 4_1:-65725835 Msa0564930:CDS
AGGGAATAAGATGGTGTACA+GGG 0.616347 4_1:-65725465 Msa0564930:CDS
TATAGAATTGCAGTGCCACA+AGG 0.627861 4_1:+65725169 None:intergenic
ACTACCGGCGCTTTAACCAA+CGG 0.635106 4_1:-65727640 None:intergenic
CAGCAATGATGATAGTGATG+AGG 0.657518 4_1:-65726828 Msa0564930:CDS
ATTCCAAGGAAGCCAAGGCG+CGG 0.658601 4_1:-65727007 Msa0564930:CDS
CAGTTGGTGCTCAAAACACG+CGG 0.659680 4_1:+65727349 None:intergenic
AAATAGTCACAGCTACAACA+AGG 0.665235 4_1:-65727469 Msa0564930:five_prime_UTR
GAAATTGACCATACCCTGGG+AGG 0.666614 4_1:+65725809 None:intergenic
CGGTAGTTAACTACCGCTGG+GGG 0.675566 4_1:-65727620 Msa0564930:five_prime_UTR
AAGGCGCGGTCGTAAAAGTG+AGG 0.675835 4_1:-65726993 Msa0564930:CDS
TAAGGATGATAGAAACTCTG+AGG 0.680715 4_1:-65727047 Msa0564930:CDS
ACGGTAGTTAACTACCGCTG+GGG 0.685471 4_1:-65727621 Msa0564930:five_prime_UTR
TGGTCACACCATCTCCACGT+TGG 0.708792 4_1:+65727074 None:intergenic
CTTTGCAGAACTCAGAACTG+CGG 0.713652 4_1:-65725304 Msa0564930:intron
AGTTGGTGCTCAAAACACGC+GGG 0.733885 4_1:+65727350 None:intergenic
AAGGGGAAAAGTTTCCAACG+TGG 0.792116 4_1:-65727088 Msa0564930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACTACTTACTATAATT+GGG + chr4_1:65725344-65725363 None:intergenic 15.0%
!! AATTAACTACTTACTATAAT+TGG + chr4_1:65725345-65725364 None:intergenic 15.0%
!! TACTAATTCATATTCTTATA+TGG - chr4_1:65726211-65726230 Msa0564930:intron 15.0%
!!! ATAAATTACAATCATCTTTT+GGG + chr4_1:65726423-65726442 None:intergenic 15.0%
!!! AATAAATTACAATCATCTTT+TGG + chr4_1:65726424-65726443 None:intergenic 15.0%
!! TTAACTACTTACTATAATTG+GGG + chr4_1:65725343-65725362 None:intergenic 20.0%
!! TGAATAGAAATTGAAAACTA+TGG + chr4_1:65725427-65725446 None:intergenic 20.0%
!! TCAATTTCTATTCAACAAAA+TGG - chr4_1:65725433-65725452 Msa0564930:intron 20.0%
!! AAACAAAAACCGAAAAATAA+GGG - chr4_1:65725626-65725645 Msa0564930:intron 20.0%
!! GAATCATAAAGATATAATGA+AGG - chr4_1:65725844-65725863 Msa0564930:CDS 20.0%
!!! ACATCATTTTTTTTCATTTC+AGG + chr4_1:65726990-65727009 None:intergenic 20.0%
!!! TTTAAAGTAATACGTGATTA+TGG + chr4_1:65727151-65727170 None:intergenic 20.0%
!! TACTTTAAATTTCCTATTGT+AGG - chr4_1:65727162-65727181 Msa0564930:CDS 20.0%
!! CAATTAATAACGTAAATACA+AGG + chr4_1:65727523-65727542 None:intergenic 20.0%
!!! ATTGTTTTTTTAATGTCACA+TGG - chr4_1:65727539-65727558 Msa0564930:five_prime_UTR 20.0%
! AGAAATTGAAAACTATGGTT+GGG + chr4_1:65725422-65725441 None:intergenic 25.0%
! TAGAAATTGAAAACTATGGT+TGG + chr4_1:65725423-65725442 None:intergenic 25.0%
! ACAGAACATGATATTGATAT+AGG + chr4_1:65725557-65725576 None:intergenic 25.0%
!!! CTTATTTTTCGGTTTTTGTT+TGG + chr4_1:65725627-65725646 None:intergenic 25.0%
! CAAACAAAAACCGAAAAATA+AGG - chr4_1:65725625-65725644 Msa0564930:intron 25.0%
! AACAAAAACCGAAAAATAAG+GGG - chr4_1:65725627-65725646 Msa0564930:intron 25.0%
!!! AAACTTTTCCCCTTATTTTT+CGG + chr4_1:65725638-65725657 None:intergenic 25.0%
! GTTTCTATCATCCTTATTAA+TGG + chr4_1:65725681-65725700 None:intergenic 25.0%
! CAAAAACAAGTACGATTAAA+GGG + chr4_1:65726174-65726193 None:intergenic 25.0%
! TCAAAAACAAGTACGATTAA+AGG + chr4_1:65726175-65726194 None:intergenic 25.0%
! AAAGACATCTTAAAAGCAAA+AGG + chr4_1:65726396-65726415 None:intergenic 25.0%
! GATGATTGTAATTTATTCGT+AGG - chr4_1:65726427-65726446 Msa0564930:intron 25.0%
! TTATAACGCAAAAAACCAAT+AGG - chr4_1:65726459-65726478 Msa0564930:intron 25.0%
!! GATTTAGCTATAAGTTTTTG+GGG + chr4_1:65726794-65726813 None:intergenic 25.0%
!! GGATTTAGCTATAAGTTTTT+GGG + chr4_1:65726795-65726814 None:intergenic 25.0%
!! TGGATTTAGCTATAAGTTTT+TGG + chr4_1:65726796-65726815 None:intergenic 25.0%
! ATAACAAAATCAAACACCAA+AGG + chr4_1:65726820-65726839 None:intergenic 25.0%
!!! TTTGATTTTGTTATTCCACA+GGG - chr4_1:65726826-65726845 Msa0564930:CDS 25.0%
! CTGATAAATAACAGAAAAGA+TGG + chr4_1:65727070-65727089 None:intergenic 25.0%
!!! AAGCATAGTTTTGTTTGTTT+TGG - chr4_1:65727340-65727359 Msa0564930:five_prime_UTR 25.0%
!!! GGTCAACAAGATTTTTTTTT+AGG + chr4_1:65727638-65727657 None:intergenic 25.0%
AGCTACAACAAGGTATATAT+TGG - chr4_1:65725273-65725292 Msa0564930:CDS 30.0%
!! GGGTAATTTTAACAAACAGT+TGG + chr4_1:65725402-65725421 None:intergenic 30.0%
AAGAATCTCGAATGAGAAAA+AGG + chr4_1:65725497-65725516 None:intergenic 30.0%
AATGTGATGAGTAGATAAAG+TGG + chr4_1:65725528-65725547 None:intergenic 30.0%
!! TTTTGTTTGGATGTAGGATT+AGG + chr4_1:65725614-65725633 None:intergenic 30.0%
AATTTCCAACAACAATTCCA+AGG - chr4_1:65725711-65725730 Msa0564930:intron 30.0%
CATCCAATTAAGAATGTTGT+AGG - chr4_1:65726049-65726068 Msa0564930:intron 30.0%
TCTCCTACAACATTCTTAAT+TGG + chr4_1:65726055-65726074 None:intergenic 30.0%
!!! TTGTTTTTGAACGCTATAAC+AGG - chr4_1:65726185-65726204 Msa0564930:intron 30.0%
CTTCTATGCTAAGTGTTTAA+TGG - chr4_1:65726289-65726308 Msa0564930:intron 30.0%
TAATTCCAAGTTACCTATGT+TGG - chr4_1:65726621-65726640 Msa0564930:CDS 30.0%
TAATTCCAACATAGGTAACT+TGG + chr4_1:65726629-65726648 None:intergenic 30.0%
!!! TCGCATTTTAATTCCAACAT+AGG + chr4_1:65726637-65726656 None:intergenic 30.0%
!! TGATTAGTCTCACATTAGTT+AGG - chr4_1:65726658-65726677 Msa0564930:CDS 30.0%
!!! GTTTGATTTTGTTATTCCAC+AGG - chr4_1:65726825-65726844 Msa0564930:CDS 30.0%
!!! CTCAAATTTTGTTTCTACGA+GGG - chr4_1:65727248-65727267 Msa0564930:CDS 30.0%
!!! TTTTGTTTGTTTTGGCATCA+AGG - chr4_1:65727348-65727367 Msa0564930:five_prime_UTR 30.0%
!! GGTCATTTTCATGTGTCAAT+TGG - chr4_1:65725141-65725160 Msa0564930:three_prime_UTR 35.0%
GGTAAGGTAAGCATATTCTA+TGG + chr4_1:65725195-65725214 None:intergenic 35.0%
!! TAGCTCGTTTCTTTTTGGTA+AGG + chr4_1:65725211-65725230 None:intergenic 35.0%
TTACCAAAAAGAAACGAGCT+AGG - chr4_1:65725210-65725229 Msa0564930:exon 35.0%
AAATAGTCACAGCTACAACA+AGG - chr4_1:65725263-65725282 Msa0564930:CDS 35.0%
TTTGGATGTAGGATTAGGTT+CGG + chr4_1:65725609-65725628 None:intergenic 35.0%
!! TTCGGTTTTTGTTTGGATGT+AGG + chr4_1:65725620-65725639 None:intergenic 35.0%
AGATGGTGTGACCATTAATA+AGG - chr4_1:65725667-65725686 Msa0564930:intron 35.0%
TAAGGATGATAGAAACTCTG+AGG - chr4_1:65725685-65725704 Msa0564930:intron 35.0%
GATATAATGAAGGACAGTGT+CGG - chr4_1:65725854-65725873 Msa0564930:CDS 35.0%
AAGAATGTTGTAGGAGATGA+TGG - chr4_1:65726058-65726077 Msa0564930:intron 35.0%
! ATGATGGTGCTGAAATTGAT+TGG - chr4_1:65726074-65726093 Msa0564930:intron 35.0%
! TGATGGTGCTGAAATTGATT+GGG - chr4_1:65726075-65726094 Msa0564930:intron 35.0%
AAAACCAATAGGTCGAATGT+AGG - chr4_1:65726470-65726489 Msa0564930:intron 35.0%
TATTCCTACATTCGACCTAT+TGG + chr4_1:65726477-65726496 None:intergenic 35.0%
AGTCTCACATTAGTTAGGAT+TGG - chr4_1:65726663-65726682 Msa0564930:CDS 35.0%
GTCTCACATTAGTTAGGATT+GGG - chr4_1:65726664-65726683 Msa0564930:CDS 35.0%
TTATAGCTAAATCCAGCCTT+TGG - chr4_1:65726801-65726820 Msa0564930:CDS 35.0%
CTGGAAAAATTTGAAAGAGC+TGG - chr4_1:65726859-65726878 Msa0564930:CDS 35.0%
! AGAAAGCAATAAAGGTGTAC+TGG - chr4_1:65726882-65726901 Msa0564930:CDS 35.0%
AAAGAAATTGACCATACCCT+GGG + chr4_1:65726929-65726948 None:intergenic 35.0%
AAAAGAAATTGACCATACCC+TGG + chr4_1:65726930-65726949 None:intergenic 35.0%
TAGTGAGTGATCATGAAGTA+AGG + chr4_1:65727033-65727052 None:intergenic 35.0%
CAATCTTAATCGCCTACAAT+AGG + chr4_1:65727177-65727196 None:intergenic 35.0%
CATTAACATCGAGAAAGACT+TGG - chr4_1:65727198-65727217 Msa0564930:CDS 35.0%
CCTCGTAGAAACAAAATTTG+AGG + chr4_1:65727250-65727269 None:intergenic 35.0%
!!! CCTCAAATTTTGTTTCTACG+AGG - chr4_1:65727247-65727266 Msa0564930:CDS 35.0%
GCTTATTGTACACACATTGA+AGG + chr4_1:65727324-65727343 None:intergenic 35.0%
! TCTCCTAGCTCGTTTCTTTT+TGG + chr4_1:65725216-65725235 None:intergenic 40.0%
! AAGAAGCTTCTGAGAAGAGA+AGG + chr4_1:65725301-65725320 None:intergenic 40.0%
TGAGAAAAAGGTGAGAACGT+TGG + chr4_1:65725485-65725504 None:intergenic 40.0%
TTGGATGTAGGATTAGGTTC+GGG + chr4_1:65725608-65725627 None:intergenic 40.0%
AAAAGTTTCCAACGTGGAGA+TGG - chr4_1:65725650-65725669 Msa0564930:intron 40.0%
! AGAACACGTTTGCTGCAATT+CGG - chr4_1:65725798-65725817 Msa0564930:intron 40.0%
TGCAATTCGGCAACAAAATG+CGG - chr4_1:65725811-65725830 Msa0564930:intron 40.0%
! CTATCATCATTGCTGCGTTT+TGG + chr4_1:65725899-65725918 None:intergenic 40.0%
! CAGCAATGATGATAGTGATG+AGG - chr4_1:65725904-65725923 Msa0564930:intron 40.0%
! CAATGATGATAGTGATGAGG+AGG - chr4_1:65725907-65725926 Msa0564930:intron 40.0%
GTGCTGAAATTGATTGGGAA+GGG - chr4_1:65726080-65726099 Msa0564930:intron 40.0%
TGCTGAAATTGATTGGGAAG+GGG - chr4_1:65726081-65726100 Msa0564930:intron 40.0%
AGGAGATCAATTGTTTGGAG+TGG - chr4_1:65726125-65726144 Msa0564930:intron 40.0%
! GGAGATCAATTGTTTGGAGT+GGG - chr4_1:65726126-65726145 Msa0564930:intron 40.0%
ACAAGTACGATTAAAGGGCT+AGG + chr4_1:65726169-65726188 None:intergenic 40.0%
CAAAATCAAACACCAAAGGC+TGG + chr4_1:65726816-65726835 None:intergenic 40.0%
AGAGCTGGAGAAAGCAATAA+AGG - chr4_1:65726874-65726893 Msa0564930:CDS 40.0%
! TGTACTGGAGTGCTAAAGAT+CGG - chr4_1:65726897-65726916 Msa0564930:CDS 40.0%
CAGTACACAAGTGTTACAAG+CGG - chr4_1:65727087-65727106 Msa0564930:CDS 40.0%
! AAGAGACTCCAGGTGTTATA+TGG + chr4_1:65727121-65727140 None:intergenic 40.0%
AGGACATTCTCGAACTTTCA+GGG + chr4_1:65727230-65727249 None:intergenic 40.0%
GTTTCTACGAGGGAATAAGA+TGG - chr4_1:65727258-65727277 Msa0564930:CDS 40.0%
AGGGAATAAGATGGTGTACA+GGG - chr4_1:65727267-65727286 Msa0564930:CDS 40.0%
AGCAACAGTGCATCATTATG+AGG + chr4_1:65727403-65727422 None:intergenic 40.0%
TTAATGTCACATGGTCCTTG+TGG - chr4_1:65727548-65727567 Msa0564930:five_prime_UTR 40.0%
TATAGAATTGCAGTGCCACA+AGG + chr4_1:65727566-65727585 None:intergenic 40.0%
AACGGTAGTTAACTACCGCT+GGG - chr4_1:65725110-65725129 Msa0564930:three_prime_UTR 45.0%
AATGACCAAATTACCCCCAG+CGG + chr4_1:65725128-65725147 None:intergenic 45.0%
AGAAACGAGCTAGGAGAAAG+AGG - chr4_1:65725219-65725238 Msa0564930:CDS 45.0%
GAAACGAGCTAGGAGAAAGA+GGG - chr4_1:65725220-65725239 Msa0564930:CDS 45.0%
! TTGGAGGCATAAGAGCTGTT+TGG + chr4_1:65725466-65725485 None:intergenic 45.0%
GAAAAAGGTGAGAACGTTGG+AGG + chr4_1:65725482-65725501 None:intergenic 45.0%
! TGTAGGATTAGGTTCGGGTT+CGG + chr4_1:65725603-65725622 None:intergenic 45.0%
AAGGGGAAAAGTTTCCAACG+TGG - chr4_1:65725644-65725663 Msa0564930:intron 45.0%
GGCTTCCTTGGAATTGTTGT+TGG + chr4_1:65725719-65725738 None:intergenic 45.0%
CAACAATTCCAAGGAAGCCA+AGG - chr4_1:65725720-65725739 Msa0564930:intron 45.0%
! AGATTTTGTACGCGACAGAC+TGG - chr4_1:65725775-65725794 Msa0564930:intron 45.0%
GCAATTCGGCAACAAAATGC+GGG - chr4_1:65725812-65725831 Msa0564930:intron 45.0%
! TGATGATAGTGATGAGGAGG+AGG - chr4_1:65725910-65725929 Msa0564930:intron 45.0%
! GGTGCTGAAATTGATTGGGA+AGG - chr4_1:65726079-65726098 Msa0564930:intron 45.0%
GGTGCAGGAGATCAATTGTT+TGG - chr4_1:65726120-65726139 Msa0564930:intron 45.0%
GTACGATTAAAGGGCTAGGA+TGG + chr4_1:65726165-65726184 None:intergenic 45.0%
TTGGGGAGTCTAGAAACATC+AGG + chr4_1:65726777-65726796 None:intergenic 45.0%
TCCACAGGGCAAATGATAAC+TGG - chr4_1:65726840-65726859 Msa0564930:CDS 45.0%
TCCAGTTATCATTTGCCCTG+TGG + chr4_1:65726844-65726863 None:intergenic 45.0%
TAAAGATCGGTTACCTCCCA+GGG - chr4_1:65726910-65726929 Msa0564930:CDS 45.0%
TAACCTCGCCATATAACACC+TGG - chr4_1:65727110-65727129 Msa0564930:CDS 45.0%
TGGAATACGTAAGAGACTCC+AGG + chr4_1:65727131-65727150 None:intergenic 45.0%
GAGGACATTCTCGAACTTTC+AGG + chr4_1:65727231-65727250 None:intergenic 45.0%
GAGGGAATAAGATGGTGTAC+AGG - chr4_1:65727266-65727285 Msa0564930:CDS 45.0%
AAGATGGTGTACAGGGAGAA+AGG - chr4_1:65727274-65727293 Msa0564930:CDS 45.0%
CTTTGCAGAACTCAGAACTG+CGG - chr4_1:65727428-65727447 Msa0564930:five_prime_UTR 45.0%
ACAATGCAAAGAAGCCTGCA+TGG - chr4_1:65727484-65727503 Msa0564930:five_prime_UTR 45.0%
! GCCTGCATGGATTGATGATA+AGG - chr4_1:65727497-65727516 Msa0564930:five_prime_UTR 45.0%
GCCTTATCATCAATCCATGC+AGG + chr4_1:65727501-65727520 None:intergenic 45.0%
!! TAAATAAATGATATATAAAA+AGG - chr4_1:65726688-65726707 Msa0564930:CDS 5.0%
CAGCGGTAGTTAACTACCGT+TGG + chr4_1:65725111-65725130 None:intergenic 50.0%
CAACGGTAGTTAACTACCGC+TGG - chr4_1:65725109-65725128 Msa0564930:three_prime_UTR 50.0%
ACGGTAGTTAACTACCGCTG+GGG - chr4_1:65725111-65725130 Msa0564930:three_prime_UTR 50.0%
AACTACCGCTGGGGGTAATT+TGG - chr4_1:65725120-65725139 Msa0564930:three_prime_UTR 50.0%
! AGTTGGTGCTCAAAACACGC+GGG + chr4_1:65725385-65725404 None:intergenic 50.0%
! CAGTTGGTGCTCAAAACACG+CGG + chr4_1:65725386-65725405 None:intergenic 50.0%
! GTAGGATTAGGTTCGGGTTC+GGG + chr4_1:65725602-65725621 None:intergenic 50.0%
GCAACAAAATGCGGGTGCTT+TGG - chr4_1:65725820-65725839 Msa0564930:intron 50.0%
! TGATAGTGATGAGGAGGAGG+TGG - chr4_1:65725913-65725932 Msa0564930:intron 50.0%
GAGGTGGAAGAAGAGGAAGA+TGG - chr4_1:65725929-65725948 Msa0564930:intron 50.0%
GTGGAAGAAGAGGAAGATGG+TGG - chr4_1:65725932-65725951 Msa0564930:intron 50.0%
! GAAGAAGAGGAAGATGGTGG+TGG - chr4_1:65725935-65725954 Msa0564930:intron 50.0%
TTGAGGAAGAGAGTGAGAGC+TGG - chr4_1:65725972-65725991 Msa0564930:intron 50.0%
TGAGAGCTGGCCATTGGATA+CGG - chr4_1:65725985-65726004 Msa0564930:intron 50.0%
TGGCCATTGGATACGGATGT+CGG - chr4_1:65725992-65726011 Msa0564930:intron 50.0%
ATTGGATACGGATGTCGGGT+GGG - chr4_1:65725997-65726016 Msa0564930:intron 50.0%
AAGGGGAGACTGAGGATAAC+TGG - chr4_1:65726098-65726117 Msa0564930:intron 50.0%
AGGGGAGACTGAGGATAACT+GGG - chr4_1:65726099-65726118 Msa0564930:intron 50.0%
CTAAAGATCGGTTACCTCCC+AGG - chr4_1:65726909-65726928 Msa0564930:CDS 50.0%
GAAATTGACCATACCCTGGG+AGG + chr4_1:65726926-65726945 None:intergenic 50.0%
! ACTCCAGGTGTTATATGGCG+AGG + chr4_1:65727116-65727135 None:intergenic 50.0%
CGGTAGTTAACTACCGCTGG+GGG - chr4_1:65725112-65725131 Msa0564930:three_prime_UTR 55.0%
TGGTCACACCATCTCCACGT+TGG + chr4_1:65725661-65725680 None:intergenic 55.0%
ATTCCAAGGAAGCCAAGGCG+CGG - chr4_1:65725725-65725744 Msa0564930:intron 55.0%
!! TCACTTTTACGACCGCGCCT+TGG + chr4_1:65725740-65725759 None:intergenic 55.0%
AAGGCGCGGTCGTAAAAGTG+AGG - chr4_1:65725739-65725758 Msa0564930:intron 55.0%
TGAGGAGGAGGTGGAAGAAG+AGG - chr4_1:65725922-65725941 Msa0564930:intron 55.0%
!! GGAAGATGGTGGTGGAGAGA+AGG - chr4_1:65725943-65725962 Msa0564930:intron 55.0%
!! AGATGGTGGTGGAGAGAAGG+CGG - chr4_1:65725946-65725965 Msa0564930:intron 55.0%
TGGAGAGAAGGCGGTGATTG+AGG - chr4_1:65725955-65725974 Msa0564930:intron 55.0%
AGAGAGTGAGAGCTGGCCAT+TGG - chr4_1:65725979-65725998 Msa0564930:intron 55.0%
GGCCATTGGATACGGATGTC+GGG - chr4_1:65725993-65726012 Msa0564930:intron 55.0%
CACCCGACATCCGTATCCAA+TGG + chr4_1:65725998-65726017 None:intergenic 55.0%
CATTGGATACGGATGTCGGG+TGG - chr4_1:65725996-65726015 Msa0564930:intron 55.0%
TTGGATACGGATGTCGGGTG+GGG - chr4_1:65725998-65726017 Msa0564930:intron 55.0%
TGATTGGGAAGGGGAGACTG+AGG - chr4_1:65726090-65726109 Msa0564930:intron 55.0%
GACTGAGGATAACTGGGTGC+AGG - chr4_1:65726105-65726124 Msa0564930:intron 55.0%
ATCGGTTACCTCCCAGGGTA+TGG - chr4_1:65726915-65726934 Msa0564930:CDS 55.0%
ACTCAGAACTGCGGATGAGC+TGG - chr4_1:65727437-65727456 Msa0564930:five_prime_UTR 55.0%
CGACCGCGCCTTGGCTTCCT+TGG + chr4_1:65725731-65725750 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 65725097 65727657 65725097 ID=Msa0564930;Name=Msa0564930
chr4_1 mRNA 65725097 65727657 65725097 ID=Msa0564930-mRNA-1;Parent=Msa0564930;Name=Msa0564930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=355|1|1|1|1|1|4|118|351
chr4_1 exon 65725097 65725318 65725097 ID=Msa0564930-mRNA-1:exon:21236;Parent=Msa0564930-mRNA-1
chr4_1 exon 65725459 65725570 65725459 ID=Msa0564930-mRNA-1:exon:21235;Parent=Msa0564930-mRNA-1
chr4_1 exon 65725823 65725907 65725823 ID=Msa0564930-mRNA-1:exon:21234;Parent=Msa0564930-mRNA-1
chr4_1 exon 65726548 65727657 65726548 ID=Msa0564930-mRNA-1:exon:21233;Parent=Msa0564930-mRNA-1
chr4_1 five_prime_UTR 65727303 65727657 65727303 ID=Msa0564930-mRNA-1:five_prime_utr;Parent=Msa0564930-mRNA-1
chr4_1 CDS 65726548 65727302 65726548 ID=Msa0564930-mRNA-1:cds;Parent=Msa0564930-mRNA-1
chr4_1 CDS 65725823 65725907 65725823 ID=Msa0564930-mRNA-1:cds;Parent=Msa0564930-mRNA-1
chr4_1 CDS 65725459 65725570 65725459 ID=Msa0564930-mRNA-1:cds;Parent=Msa0564930-mRNA-1
chr4_1 CDS 65725215 65725318 65725215 ID=Msa0564930-mRNA-1:cds;Parent=Msa0564930-mRNA-1
chr4_1 three_prime_UTR 65725097 65725214 65725097 ID=Msa0564930-mRNA-1:three_prime_utr;Parent=Msa0564930-mRNA-1
Gene Sequence

>Msa0564930

ATGGTCATTCTCCAAACAGCTCTTATGCCTCCAACGTTCTCACCTTTTTCTCATTCGAGATTCTTATCTTATTCCACTTTATCTACTCATCACATTGTAAAGCCTATATCAATATCATGTTCTGTTTCAACTAACTCTAGTTCAAAACCCGAACCCGAACCTAATCCTACATCCAAACAAAAACCGAAAAATAAGGGGAAAAGTTTCCAACGTGGAGATGGTGTGACCATTAATAAGGATGATAGAAACTCTGAGGATGAATTTCCAACAACAATTCCAAGGAAGCCAAGGCGCGGTCGTAAAAGTGAGGCTATGAAAGTTGAAGATTTTGTACGCGACAGACTGGAGAACACGTTTGCTGCAATTCGGCAACAAAATGCGGGTGCTTTGGAGAATCATAAAGATATAATGAAGGACAGTGTCGGTGATGATTCTGAATCAAAACCAAAACGCAGCAATGATGATAGTGATGAGGAGGAGGTGGAAGAAGAGGAAGATGGTGGTGGAGAGAAGGCGGTGATTGAGGAAGAGAGTGAGAGCTGGCCATTGGATACGGATGTCGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCAATTAAGAATGTTGTAGGAGATGATGGTGCTGAAATTGATTGGGAAGGGGAGACTGAGGATAACTGGGTGCAGGAGATCAATTGTTTGGAGTGGGAGAGTTTTGCTTTCCATCCTAGCCCTTTAATCGTACTTGTTTTTGAACGCTATAACAGGGCAAATGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAATAAAGGTGTACTGGAGTGCTAAAGATCGGTTACCTCCCAGGGCGATTAAGATTGACATTAACATCGAGAAAGACTTGGCTTATGCCCTGAAAGTTCGAGAATGTCCTCAAATTTTGTTTCTACGAGGGAATAAGATGGTGTACAGGGAGAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTTTATTACAATGCAAAGAAGCCTGCATGGATTGATGATAAGGCCTTGTATTTACGTTATTAA

Protein sequence

>Msa0564930

MVILQTALMPPTFSPFSHSRFLSYSTLSTHHIVKPISISCSVSTNSSSKPEPEPNPTSKQKPKNKGKSFQRGDGVTINKDDRNSEDEFPTTIPRKPRRGRKSEAMKVEDFVRDRLENTFAAIRQQNAGALENHKDIMKDSVGDDSESKPKRSNDDSDEEEVEEEEDGGGEKAVIEEESESWPLDTDVGWGIRASEYFEKHPIKNVVGDDGAEIDWEGETEDNWVQEINCLEWESFAFHPSPLIVLVFERYNRANDNWKNLKELEKAIKVYWSAKDRLPPRAIKIDINIEKDLAYALKVRECPQILFLRGNKMVYREKELRTADELVQMIAFFYYNAKKPAWIDDKALYLRY*