AlfalfaGEDB | Msa1054380

M. sativa cultivar zhongmu-4 / Msa1054380

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054380	XP_024625940.1	95.807	644	23	1	1	640	1	644	0.0	1273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054380	sp\|Q9FMU2\|PP380_ARATH	44.237	642	345	7	1	639	1	632	0.0	578

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054380	A0A396GZK9	95.807	644	23	1	1	640	1	644	0.0	1273

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa1054380	0.851327	9.540213e-61	-8.615850e-47
Msa0003720	Msa1054380	0.800023	1.750490e-48	-8.615850e-47
Msa0016670	Msa1054380	0.822618	2.150997e-53	-8.615850e-47
Msa0017510	Msa1054380	0.845046	5.182558e-59	-8.615850e-47
Msa0018000	Msa1054380	0.800147	1.651917e-48	-8.615850e-47
Msa0027230	Msa1054380	0.803275	3.766932e-49	-8.615850e-47
Msa0029270	Msa1054380	0.812234	4.697880e-51	-8.615850e-47
Msa0032090	Msa1054380	0.800759	1.239806e-48	-8.615850e-47
Msa0032430	Msa1054380	0.811050	8.496221e-51	-8.615850e-47
Msa0046100	Msa1054380	0.819991	8.682374e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054380	MtrunA17_Chr7g0224541	95.807	644	23	1	1	640	1	644	0.0	1273
Msa1054380	MtrunA17_Chr7g0224531	89.761	293	13	1	266	558	1	276	1.28e-178	509
Msa1054380	MtrunA17_Chr6g0481621	25.344	509	355	13	70	567	69	563	1.64e-38	150
Msa1054380	MtrunA17_Chr6g0481621	24.157	356	265	3	255	606	110	464	3.33e-29	122
Msa1054380	MtrunA17_Chr6g0481621	26.582	158	116	0	420	577	66	223	9.11e-11	65.1
Msa1054380	MtrunA17_Chr3g0116201	25.298	419	305	6	164	579	14	427	3.76e-38	148
Msa1054380	MtrunA17_Chr3g0116201	21.402	271	212	1	235	504	187	457	1.35e-17	86.3
Msa1054380	MtrunA17_Chr3g0116201	22.137	393	289	7	83	469	76	457	1.18e-14	77.0
Msa1054380	MtrunA17_Chr1g0171281	24.276	449	333	5	90	534	58	503	4.71e-38	149
Msa1054380	MtrunA17_Chr1g0171281	25.441	397	254	8	178	570	111	469	1.22e-27	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054380	AT5G14080.1	44.237	642	345	7	1	639	1	632	0.0	578
Msa1054380	AT1G62670.2	25.000	392	290	4	178	567	205	594	1.01e-35	143
Msa1054380	AT1G62670.2	22.297	444	331	6	169	604	56	493	2.48e-27	118
Msa1054380	AT1G62670.2	23.046	499	333	8	90	578	78	535	4.05e-27	117
Msa1054380	AT1G62670.2	24.670	454	325	10	83	529	182	625	4.59e-27	117
Msa1054380	AT1G62670.1	25.000	392	290	4	178	567	205	594	1.01e-35	143
Msa1054380	AT1G62670.1	22.297	444	331	6	169	604	56	493	2.48e-27	118
Msa1054380	AT1G62670.1	23.046	499	333	8	90	578	78	535	4.05e-27	117
Msa1054380	AT1G62670.1	24.670	454	325	10	83	529	182	625	4.59e-27	117
Msa1054380	AT3G22470.2	27.500	400	245	6	189	578	135	499	1.06e-35	143

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Find 169 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCTATTGAGCATTTG+AGG	0.435622	7_2:+25867093	Msa1054380:CDS
AAAGGCCACAATTAAGATCA+TGG	0.544188	7_2:-25868820	None:intergenic
AAAGTATTTGTAAAAGAGAA+AGG	0.487575	7_2:-25868838	None:intergenic
AAAGTGTAACTCGCACTATC+AGG	0.384740	7_2:-25866358	None:intergenic
AAATGGTTTCAGTGATGAAG+TGG	0.618271	7_2:+25868620	Msa1054380:CDS
AAATTACTTCAAGGATGTCG+AGG	0.600189	7_2:+25866033	Msa1054380:CDS
AACAAAGCCACATGGGATTC+CGG	0.360766	7_2:-25867041	None:intergenic
AACATTTCAACAAAGCCACA+TGG	0.575928	7_2:-25867049	None:intergenic
AAGCGAGAGAATGGTGATTA+AGG	0.333391	7_2:-25865028	None:intergenic
AATCACCATTCTCTCGCTTT+AGG	0.283844	7_2:+25865032	Msa1054380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGAAACATCATCATTATTCA+TGG	+	chr7_2:25864919-25864938	Msa1054380:CDS	30.0%
ATGATTGAAGAAACAAGTGA+TGG	-	chr7_2:25864996-25865015	None:intergenic	30.0%
AATGGTGATTAAGGAGAAAA+GGG	-	chr7_2:25865022-25865041	None:intergenic	30.0%
TGTTGAATTGATTGCTCAAA+TGG	+	chr7_2:25865292-25865311	Msa1054380:CDS	30.0%
GTTGAATTGATTGCTCAAAT+GGG	+	chr7_2:25865293-25865312	Msa1054380:CDS	30.0%
ATTTCAGAAGCTAAGATGAT+TGG	+	chr7_2:25865785-25865804	Msa1054380:CDS	30.0%
TTTCAGAAGCTAAGATGATT+GGG	+	chr7_2:25865786-25865805	Msa1054380:CDS	30.0%
ATTATGTTGTTGAGAAAGAG+AGG	+	chr7_2:25865912-25865931	Msa1054380:CDS	30.0%
ATTGAGTAGGAATTTGTGTA+GGG	+	chr7_2:25865961-25865980	Msa1054380:CDS	30.0%
TAATTATAAGACGAGACATC+AGG	-	chr7_2:25866151-25866170	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	25864840	25868999	25864840	ID=Msa1054380;Name=Msa1054380
chr7_2	mRNA	25864840	25868999	25864840	ID=Msa1054380-mRNA-1;Parent=Msa1054380;Name=Msa1054380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.66\|0.25\|1\|1\|1\|4\|223\|697
chr7_2	exon	25864840	25866511	25864840	ID=Msa1054380-mRNA-1:exon:5563;Parent=Msa1054380-mRNA-1
chr7_2	exon	25866985	25867234	25866985	ID=Msa1054380-mRNA-1:exon:5564;Parent=Msa1054380-mRNA-1
chr7_2	exon	25868509	25868662	25868509	ID=Msa1054380-mRNA-1:exon:5565;Parent=Msa1054380-mRNA-1
chr7_2	exon	25868759	25868999	25868759	ID=Msa1054380-mRNA-1:exon:5566;Parent=Msa1054380-mRNA-1
chr7_2	CDS	25864840	25866511	25864840	ID=Msa1054380-mRNA-1:cds;Parent=Msa1054380-mRNA-1
chr7_2	CDS	25866985	25867234	25866985	ID=Msa1054380-mRNA-1:cds;Parent=Msa1054380-mRNA-1
chr7_2	CDS	25868509	25868662	25868509	ID=Msa1054380-mRNA-1:cds;Parent=Msa1054380-mRNA-1
chr7_2	CDS	25868759	25868776	25868759	ID=Msa1054380-mRNA-1:cds;Parent=Msa1054380-mRNA-1
chr7_2	three_prime_UTR	25868777	25868999	25868777	ID=Msa1054380-mRNA-1:three_prime_utr;Parent=Msa1054380-mRNA-1

Gene Sequence

>Msa1054380

ATGAAACCTGCAACATCAACACTAGAATTAGCAAAAAGAATAAGCAAAACAATAATCACAACCTCAAAAAACCACAACACGAAACATCATCATTATTCATGGAACTCACAAATCGAACAAAACATTCACAACAACCTCAAACACAATCTAACACCATCACTTGTTTCTTCAATCATTGACCCTTTTCTCCTTAATCACCATTCTCTCGCTTTAGGTTTTTTCAATTGGGTTTCTCAACAACCCAATTTCACTCACAATGCTTCCACTTTTCATTCCATTCTTAAATCACTTTCCTTAACACAGAACCATTCACATTCACACTCTCTTATTCAACTTGTTAAAAAAGCTCAATTTTTGAATTTTCAAATACACCCTTCAGTTTATTGTGCTGTTGTAACAACCCACATTGCGCGAAACAACTTAAATCAAGCATTTTTAATCTTCAACGATGTTGTTGAATTGATTGCTCAAATGGGTGCCCCTATATGTAATTCTTTATTAGCTGCTCTTGCTGGTTTTAATATTGATAATGCACGTAAGGTGTTTGATGAAATGATTGTTAGGGGTGTACGTTTTAGTACGTTGGGTTTTGGTGTTTTTGTTTGGTGGGTTTGTAAGGAGGGTGATATGGGGAAAGTGTTGGGTTTAGTGGATGAGGTTGGGGAATGTGGTTTTGAGATTAATGGTTCGGTTGTGGCGGTTTTGATTGTTCACGGTTTGTGTGAGGTTGGGAAGGTCGATGAGGCAATGGTGATGTTGGGTGAATTGAGGGAGAGAGGGTGGAAGCCTGATTTTATGGCGTATTGGGTTGTTGCTAATGAGTTTCGGAAGATGGGGAATGTGGTTGATGAGATTAAGGTTTTGAAGATGAAGAGGAAGTTAGGTGTGGCTCCTAGGAGTGGGGATTATAAAGGGTTTATATTTGAGTTGGTTTCGGAGAAACGGATTTCAGAAGCTAAGATGATTGGGGAGGTTATTGTTGGTGGTAACTTTGTTGTTGAAGATGATGTTTTTAATGTGTTGATTGAATCTGTTTCGGACATTGATCCTGTTGGGGCGATCGTGTTTTTTAATTATGTTGTTGAGAAAGAGAGGTTTTTGAGTGTTTCGAGTTTGAATAGATTGAGTAGGAATTTGTGTAGGGTAGGTAAGGTGGATGAATTGTTGGAGGTGTTTCGTGTTTTGGATTGTCGAAATTACTTCAAGGATGTCGAGGGTTACAATGTGATGGTGTCGTGGTTGTGCGAAGCTGGGAGAGTGAAAGAAGGCTATGCTGTTCTTCAGGAGATGAAGAAGAAAGGGTTGAATCCTGATGTCTCGTCTTATAATTATGTAATGGAAGCATGTTGTAAGGAGGATTTACTGCGCCCTGCGAGGAAGCTCTGGGATGAGATGTTTGCGAGTGGATGTTGTGGGAACTTGAAAACATATAATATTTTGATTCGCAAGTTTTCGGAGGAGGGGTTAATTGAAGAGGCTCAGACGTTGTTTAATCGCATGTTGGACAAGGGAGTTGAACCTGATAGTGCGAGTTACACTTTTCTTTTACAAGGGTTCTGCCAAGAAGATAAACTTGAAGAAGCTTTTGAGCTCTATAGCAAGTCTGTCAGACAGGATATCACCATCGCAAGAGACATTTTGGGCTCATTTATATTGTCACTCTGCAAGAAAGGACATATGACAGCTGCTTCCAAATTACTCTGCAGTCTCAGTCCTGATATAGGACGCCCGGAATCCCATGTGGCTTTGTTGAAATGTTTGGCAGATGCAAGAGAGATTCAAACTGCTATTGAGCATTTGAGGTGGGTTCAGGACAAGTCACCTTCAATGCTACAAGATATATGTACCGGACTTTTAGCTTCCCTTTCTGTTGCCAAATGCCCGGAACCGATATTGCAGTTTCTTCAAAGAATGCAAGGTGTACCTGGTATACTTTATGAAATCTCTGCATTTCTCACTGAACTTCACTGTAATGTGGTGGCTGATGAGTTGCGGACACGTAATGCCAAGGAGGAAACTGTAGTTCATGTGACAAATGGTTTCAGTGATGAAGTGGTTGTTGCATCAATCAGAATGGTTGAGATTGAGACATAA

Protein sequence

>Msa1054380

MKPATSTLELAKRISKTIITTSKNHNTKHHHYSWNSQIEQNIHNNLKHNLTPSLVSSIIDPFLLNHHSLALGFFNWVSQQPNFTHNASTFHSILKSLSLTQNHSHSHSLIQLVKKAQFLNFQIHPSVYCAVVTTHIARNNLNQAFLIFNDVVELIAQMGAPICNSLLAALAGFNIDNARKVFDEMIVRGVRFSTLGFGVFVWWVCKEGDMGKVLGLVDEVGECGFEINGSVVAVLIVHGLCEVGKVDEAMVMLGELRERGWKPDFMAYWVVANEFRKMGNVVDEIKVLKMKRKLGVAPRSGDYKGFIFELVSEKRISEAKMIGEVIVGGNFVVEDDVFNVLIESVSDIDPVGAIVFFNYVVEKERFLSVSSLNRLSRNLCRVGKVDELLEVFRVLDCRNYFKDVEGYNVMVSWLCEAGRVKEGYAVLQEMKKKGLNPDVSSYNYVMEACCKEDLLRPARKLWDEMFASGCCGNLKTYNILIRKFSEEGLIEEAQTLFNRMLDKGVEPDSASYTFLLQGFCQEDKLEEAFELYSKSVRQDITIARDILGSFILSLCKKGHMTAASKLLCSLSPDIGRPESHVALLKCLADAREIQTAIEHLRWVQDKSPSMLQDICTGLLASLSVAKCPEPILQFLQRMQGVPGILYEISAFLTELHCNVVADELRTRNAKEETVVHVTNGFSDEVVVASIRMVEIET*