AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471420 MtrunA17_Chr3g0126221 99.702 336 1 0 1 336 1 336 0.0 694
Msa0471420 MtrunA17_Chr5g0396961 68.750 336 105 0 1 336 1 336 1.51e-176 493
Msa0471420 MtrunA17_Chr1g0149521 47.619 315 162 3 20 334 27 338 3.88e-109 322
Msa0471420 MtrunA17_Chr3g0115251 40.708 339 176 7 17 332 7 343 9.60e-82 254
Msa0471420 MtrunA17_Chr4g0024631 48.462 260 126 4 80 332 98 356 7.81e-78 244
Msa0471420 MtrunA17_Chr2g0322591 48.462 260 126 4 80 332 94 352 2.78e-76 240
Msa0471420 MtrunA17_Chr4g0004991 46.586 249 131 2 99 346 10 257 2.94e-76 236
Msa0471420 MtrunA17_Chr4g0017871 48.469 196 99 2 138 332 4 198 7.56e-62 198
Msa0471420 MtrunA17_Chr8g0360581 34.722 216 134 5 118 331 87 297 7.53e-37 135
Msa0471420 MtrunA17_Chr2g0316241 33.475 236 146 7 107 337 71 300 2.41e-35 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471420 AT5G53340.2 71.835 316 89 0 22 337 18 333 3.10e-176 493
Msa0471420 AT5G53340.1 72.293 314 87 0 22 335 18 331 7.39e-176 491
Msa0471420 AT4G32120.1 45.062 324 173 3 9 332 17 335 1.33e-104 311
Msa0471420 AT2G25300.1 45.981 311 164 3 22 332 30 336 5.15e-102 304
Msa0471420 AT2G25300.2 46.360 261 136 3 72 332 2 258 6.14e-87 263
Msa0471420 AT1G05170.1 49.064 267 128 3 73 332 91 356 4.69e-83 256
Msa0471420 AT1G05170.2 49.064 267 128 3 73 332 91 356 5.12e-82 255
Msa0471420 AT1G11730.1 47.584 269 139 2 80 347 81 348 1.79e-80 251
Msa0471420 AT1G77810.2 40.184 326 176 7 19 332 15 333 1.96e-79 248
Msa0471420 AT2G32430.1 50.385 260 121 4 80 332 100 358 4.42e-79 248
Msa0471420 AT1G32930.1 48.077 260 127 5 80 332 90 348 6.55e-79 247
Msa0471420 AT1G77810.1 48.511 235 119 2 99 332 103 336 2.06e-78 245
Msa0471420 AT4G26940.1 40.896 335 174 7 21 332 24 357 9.44e-74 234
Msa0471420 AT1G22015.1 47.471 257 129 4 80 332 90 344 3.18e-73 232
Msa0471420 AT1G33430.1 47.328 262 134 3 74 332 82 342 7.77e-73 231
Msa0471420 AT1G33430.2 45.926 270 134 4 74 332 82 350 7.85e-70 224
Msa0471420 AT1G33430.3 46.491 228 118 3 74 298 82 308 4.82e-58 190
Msa0471420 AT4G26940.2 44.865 185 95 3 80 258 99 282 4.53e-38 138
Msa0471420 AT3G14960.1 31.933 238 152 6 105 337 75 307 8.23e-38 138
Msa0471420 AT1G53290.1 32.377 244 153 7 99 337 73 309 2.06e-37 137
Msa0471420 AT2G26100.2 33.190 232 145 6 111 337 107 333 9.73e-33 125
Msa0471420 AT2G26100.1 33.190 232 145 6 111 337 107 333 1.13e-32 125

Find 108 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTTGTTTGATACTTC+TGG 0.107684 3_3:+73702514 None:intergenic
ATTCTGGTTCATACCATTTA+TGG 0.151675 3_3:+73697360 None:intergenic
AGTTCTTCTGATCCACTTTA+TGG 0.160035 3_3:-73696253 Msa0471420:three_prime_UTR
ACAAAATTGTTCAACAGAAT+TGG 0.260412 3_3:-73702462 Msa0471420:five_prime_UTR
AGCGCTGGATCCTGGTTTAT+TGG 0.281122 3_3:-73696728 Msa0471420:CDS
TCACCAAACTTCCACCATTC+TGG 0.286717 3_3:+73697344 None:intergenic
CTTCTTTGTTTGATACTTCT+GGG 0.290606 3_3:+73702515 None:intergenic
ATTATTGTGCGGTTTGTTAT+TGG 0.293654 3_3:-73700573 Msa0471420:CDS
AAGATATACATACTAGAATT+AGG 0.308957 3_3:+73700367 None:intergenic
ATAGGTATACTCACAAAGTT+TGG 0.315197 3_3:-73701250 Msa0471420:CDS
CTTTCATTCGCCATGGGTAT+AGG 0.320969 3_3:-73696228 Msa0471420:three_prime_UTR
TCCTGACTGTCTCCACGATT+TGG 0.334450 3_3:+73700429 None:intergenic
GATGATGTTTATGTAAATAT+TGG 0.344764 3_3:-73699712 Msa0471420:intron
TTCTTCCTGCACAGATGCCT+TGG 0.355554 3_3:-73697553 Msa0471420:intron
TGTTGCTCGTCTTGGTCGAC+AGG 0.380192 3_3:-73696671 Msa0471420:CDS
TAGCCTTCTCTGGGTGTCCC+TGG 0.392043 3_3:+73699794 None:intergenic
TGCGGTTTGTTATTGGTAGA+AGG 0.402439 3_3:-73700566 Msa0471420:intron
TCTTCCTGCACAGATGCCTT+GGG 0.408130 3_3:-73697552 Msa0471420:intron
ATGTTGACAGGAACCATAAA+TGG 0.410187 3_3:-73697373 Msa0471420:intron
CTAAATTCATATCAATAAAC+AGG 0.419483 3_3:-73696859 Msa0471420:intron
GAAATTGAAAATGCAGAGTA+AGG 0.420785 3_3:-73702435 Msa0471420:exon
TACATGGGGTGCATGAAATC+AGG 0.422297 3_3:-73697492 Msa0471420:CDS
GAACCAGAATGGTGGAAGTT+TGG 0.439106 3_3:-73697347 Msa0471420:CDS
TGCTACGCTTGCAACTCATC+TGG 0.441269 3_3:-73697529 Msa0471420:CDS
TGCTCATGCTGCAGACGAAT+GGG 0.447626 3_3:-73699761 Msa0471420:CDS
TCCAAATCGTGGAGACAGTC+AGG 0.453926 3_3:-73700430 Msa0471420:CDS
GGACAAACCTCGTCTTTACA+TGG 0.453946 3_3:-73697508 Msa0471420:CDS
TGTCAGGATGATCATGTAGA+AGG 0.468646 3_3:-73699820 Msa0471420:intron
GTATGTCATATCACGAGCTT+TGG 0.479059 3_3:-73696882 Msa0471420:CDS
GAGCCACAGACTCTCAACTA+TGG 0.483549 3_3:-73702408 Msa0471420:CDS
AACATTGAGATGAAAAGTGC+AGG 0.488983 3_3:+73702368 None:intergenic
TATGGTTCTTTCATTCGCCA+TGG 0.491079 3_3:-73696235 Msa0471420:three_prime_UTR
ATGATGTGAGCGCTGGATCC+TGG 0.491435 3_3:-73696736 Msa0471420:CDS
TTGCTCATGCTGCAGACGAA+TGG 0.497982 3_3:-73699762 Msa0471420:CDS
ATGTGGTCCACCTTGGTCAA+AGG 0.498242 3_3:-73696024 Msa0471420:three_prime_UTR
TGCCATTCGTAAGGCTTGGA+TGG 0.499048 3_3:-73701209 Msa0471420:CDS
ATGGTTCTTTCATTCGCCAT+GGG 0.505271 3_3:-73696234 Msa0471420:three_prime_UTR
AGGGATTGATTGAGACCAAT+GGG 0.506140 3_3:-73701303 Msa0471420:CDS
TAGGTATACTCACAAAGTTT+GGG 0.507339 3_3:-73701249 Msa0471420:CDS
GAGATGCCATTCGTAAGGCT+TGG 0.511599 3_3:-73701213 Msa0471420:CDS
TGATCATGTAGAAGGAAGCC+AGG 0.514709 3_3:-73699812 Msa0471420:CDS
GTCACAAGTTAATGTAAAGA+TGG 0.517507 3_3:+73696343 None:intergenic
TCTTGGTCGACAGGTCTCAC+TGG 0.518096 3_3:-73696662 Msa0471420:CDS
AGACGACCCTTGGTAGTCAT+AGG 0.518358 3_3:-73701268 Msa0471420:CDS
AAGACATTGATCGTGAGAAT+AGG 0.518623 3_3:-73700404 Msa0471420:CDS
TTCGCTTCTATCTACGTCGC+CGG 0.519693 3_3:-73702338 Msa0471420:CDS
AAAGAGCTTGATAGAATCAC+TGG 0.520664 3_3:-73702199 Msa0471420:CDS
ATCCAGCGCTCACATCATCA+TGG 0.522955 3_3:+73696741 None:intergenic
TTCGCAAATTCATCGGTTCA+AGG 0.524911 3_3:-73696315 Msa0471420:three_prime_UTR
GAAGCTTGATGCGCTTGAGA+TGG 0.531202 3_3:-73701362 Msa0471420:CDS
ACCACAGTTCGCAAATTCAT+CGG 0.532200 3_3:-73696322 Msa0471420:three_prime_UTR
TTTGTACATTGTATACTGCT+GGG 0.534553 3_3:-73696100 Msa0471420:three_prime_UTR
AAAGAAAATAGAAGATGGAA+AGG 0.534833 3_3:-73700598 Msa0471420:CDS
CTTCTATCTACGTCGCCGGA+AGG 0.537031 3_3:-73702334 Msa0471420:intron
GAGGAAGATAACTCTTCTCT+TGG 0.541473 3_3:-73696204 Msa0471420:three_prime_UTR
AAAACAATTTAGCCTTCTCT+GGG 0.541535 3_3:+73699785 None:intergenic
TGCTGCAGACGAATGGGATG+CGG 0.545142 3_3:-73699755 Msa0471420:CDS
AGTGGATCAGAAGAACTTGT+AGG 0.548120 3_3:+73696259 None:intergenic
CGTAAGGCTTGGATGGGAAG+TGG 0.549177 3_3:-73701202 Msa0471420:intron
AAGAAAATAGAAGATGGAAA+GGG 0.551039 3_3:-73700597 Msa0471420:CDS
CGAATGAAAGAACCATAAAG+TGG 0.551550 3_3:+73696241 None:intergenic
CATTGAAGATCATAGCCTGC+AGG 0.551835 3_3:-73701509 Msa0471420:intron
CACATCAAGTCCAATAAACC+AGG 0.553191 3_3:+73696718 None:intergenic
AAGGGATTGATTGAGACCAA+TGG 0.553740 3_3:-73701304 Msa0471420:CDS
GCTTTAAAGAAAATAGAAGA+TGG 0.553936 3_3:-73700603 Msa0471420:CDS
TCAGAAGAACTTGTAGGTAG+AGG 0.557125 3_3:+73696265 None:intergenic
GCCCATGATGATGTGAGCGC+TGG 0.559269 3_3:-73696743 Msa0471420:CDS
GCTTGATAGAATCACTGGCC+AGG 0.560857 3_3:-73702194 Msa0471420:intron
TTACTCTAAGAGACGACCCT+TGG 0.562031 3_3:-73701278 Msa0471420:CDS
AGGAGTGACATGGTGGGCTG+TGG 0.564739 3_3:-73696138 Msa0471420:three_prime_UTR
AGTTGCAAGCGTAGCACCCA+AGG 0.569671 3_3:+73697536 None:intergenic
GCCATTCGTAAGGCTTGGAT+GGG 0.570508 3_3:-73701208 Msa0471420:CDS
TCTCTTAGAGTAAGTCCCAT+TGG 0.572994 3_3:+73701288 None:intergenic
GACGTAGATAGAAGCGAAAG+TGG 0.573301 3_3:+73702343 None:intergenic
GACTGTCAATGTAATATACA+AGG 0.580037 3_3:-73696397 Msa0471420:three_prime_UTR
GAATAGAGATGCCATTCGTA+AGG 0.580670 3_3:-73701218 Msa0471420:CDS
ATCTTCCTCTCCTATACCCA+TGG 0.584446 3_3:+73696218 None:intergenic
GACAAACCTCGTCTTTACAT+GGG 0.586015 3_3:-73697507 Msa0471420:CDS
GTGCTCCATGTGGTCCACCT+TGG 0.589907 3_3:-73696031 Msa0471420:three_prime_UTR
ATAAATGGTATGAACCAGAA+TGG 0.592048 3_3:-73697358 Msa0471420:CDS
TCCAGCGCTCACATCATCAT+GGG 0.592515 3_3:+73696742 None:intergenic
TACTCACAAAGTTTGGGCGA+AGG 0.600199 3_3:-73701243 Msa0471420:CDS
TCGCCATAGTTGAGAGTCTG+TGG 0.607159 3_3:+73702405 None:intergenic
AAGCCAGGGACACCCAGAGA+AGG 0.608809 3_3:-73699797 Msa0471420:CDS
ATTCGCCATGGGTATAGGAG+AGG 0.615806 3_3:-73696223 Msa0471420:three_prime_UTR
TTTGACCAAGGTGGACCACA+TGG 0.615833 3_3:+73696026 None:intergenic
AAATTGAAAATGCAGAGTAA+GGG 0.616655 3_3:-73702434 Msa0471420:exon
ATATCAAGAGACAACTCTCA+AGG 0.617506 3_3:+73696372 None:intergenic
ACATTGAGATGAAAAGTGCA+GGG 0.618173 3_3:+73702369 None:intergenic
TAACTTTGCAGTCCAAATCG+TGG 0.620786 3_3:-73700441 Msa0471420:intron
TCCCATCCAAGCCTTACGAA+TGG 0.622604 3_3:+73701207 None:intergenic
TATTTATAGGAGTGACATGG+TGG 0.623623 3_3:-73696145 Msa0471420:three_prime_UTR
ACAGTCTTAAGACAATGCAC+TGG 0.627058 3_3:+73696414 None:intergenic
GGGACAATCTGCTATATCAG+TGG 0.627924 3_3:-73701538 Msa0471420:CDS
GCTCACATCATCATGGGCAT+AGG 0.629393 3_3:+73696748 None:intergenic
ATGGAAAGGGCATTATTGTG+CGG 0.632302 3_3:-73700584 Msa0471420:CDS
ACTTGCTGCAGCTAAACAAG+AGG 0.633383 3_3:-73701338 Msa0471420:CDS
AATGGTATGAACCAGAATGG+TGG 0.635380 3_3:-73697355 Msa0471420:CDS
AATTATTTATAGGAGTGACA+TGG 0.643521 3_3:-73696148 Msa0471420:three_prime_UTR
AGTATACCTATGACTACCAA+GGG 0.647007 3_3:+73701262 None:intergenic
ATTTATAGGAGTGACATGGT+GGG 0.651447 3_3:-73696144 Msa0471420:three_prime_UTR
CTTGCTGCAGCTAAACAAGA+GGG 0.652709 3_3:-73701337 Msa0471420:CDS
ATGCACCCCATGTAAAGACG+AGG 0.656600 3_3:+73697501 None:intergenic
GAGTATACCTATGACTACCA+AGG 0.661136 3_3:+73701261 None:intergenic
GATCATGTAGAAGGAAGCCA+GGG 0.662646 3_3:-73699811 Msa0471420:CDS
ACCGATGAATTTGCGAACTG+TGG 0.663530 3_3:+73696321 None:intergenic
GGGTGGACAAGTGCTCCATG+TGG 0.679775 3_3:-73696041 Msa0471420:three_prime_UTR
ACAAACCTCGTCTTTACATG+GGG 0.683906 3_3:-73697506 Msa0471420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAATTATTTAT+AGG - chr3_3:73702377-73702396 Msa0471420:CDS 0.0%
!! ATTATCCATAATTTATTAAA+AGG + chr3_3:73699027-73699046 None:intergenic 10.0%
!! AGATAAATAAAAATAAAAAG+GGG + chr3_3:73699418-73699437 None:intergenic 10.0%
!! CTAGATAAATAAAAATAAAA+AGG + chr3_3:73699420-73699439 None:intergenic 10.0%
!!! CTTTTTATTTTTATTTATCT+AGG - chr3_3:73699418-73699437 Msa0471420:intron 10.0%
!!! TGTTATAGATTTTAAAAAAA+TGG + chr3_3:73700072-73700091 None:intergenic 10.0%
!!! TTTTTAAAATCTATAACAAT+CGG - chr3_3:73700074-73700093 Msa0471420:intron 10.0%
!!! TTTTTGGAATTTTTTAAATA+GGG + chr3_3:73700930-73700949 None:intergenic 10.0%
!!! CTTATATAGAATAAATTTTA+TGG - chr3_3:73701116-73701135 Msa0471420:intron 10.0%
!!! TTTTTGTAATATTATTATCT+TGG - chr3_3:73702536-73702555 Msa0471420:five_prime_UTR 10.0%
!! AAAGGAATTACATATATATA+AGG + chr3_3:73697669-73697688 None:intergenic 15.0%
!! TTTAAAAACATTATCTTTGT+AGG - chr3_3:73697905-73697924 Msa0471420:intron 15.0%
!!! AATGACCTTTTAATAAATTA+TGG - chr3_3:73699019-73699038 Msa0471420:intron 15.0%
!!! TTCAAAAAACTTGATTTTTT+AGG + chr3_3:73699148-73699167 None:intergenic 15.0%
!! GATAAATAAAAATAAAAAGG+GGG + chr3_3:73699417-73699436 None:intergenic 15.0%
!! ATTTCAGAAAACAAATAAAA+AGG - chr3_3:73699542-73699561 Msa0471420:intron 15.0%
!! TTAAAAAAACCTATAACAAA+CGG + chr3_3:73699657-73699676 None:intergenic 15.0%
!!! CATTTTGTTATAAACTTTTT+TGG - chr3_3:73699801-73699820 Msa0471420:CDS 15.0%
!!! CTTTTCATAAAAATCATTTT+TGG - chr3_3:73699871-73699890 Msa0471420:intron 15.0%
!!! TTTTAAAATCTATAACAATC+GGG - chr3_3:73700075-73700094 Msa0471420:intron 15.0%
!! TAATGTTAAAGTTAAACTAA+GGG + chr3_3:73700169-73700188 None:intergenic 15.0%
!! TTAATGTTAAAGTTAAACTA+AGG + chr3_3:73700170-73700189 None:intergenic 15.0%
!! TGGAAAAATTTATGATTTAA+AGG - chr3_3:73700297-73700316 Msa0471420:intron 15.0%
!!! CTTTTTGGAATTTTTTAAAT+AGG + chr3_3:73700931-73700950 None:intergenic 15.0%
!!! ATAAAAATGTGAATTCTTTT+TGG + chr3_3:73700946-73700965 None:intergenic 15.0%
!! ATTTATTCTATATAAGCATA+TGG + chr3_3:73701112-73701131 None:intergenic 15.0%
!! AATTTACTTACATAAATGTT+TGG - chr3_3:73702025-73702044 Msa0471420:intron 15.0%
!! ATTTGTGTAAAAATCACATT+TGG - chr3_3:73696702-73696721 Msa0471420:CDS 20.0%
!!! TTTTTGCTAATTTTTGTAAC+AGG + chr3_3:73697065-73697084 None:intergenic 20.0%
!! GCTAAAAAGAGATATATTTA+TGG + chr3_3:73697422-73697441 None:intergenic 20.0%
!!! TAACACGTTTTATAAAAATC+TGG + chr3_3:73697846-73697865 None:intergenic 20.0%
!!! ATTTTGGTTTTATTTTTGAG+TGG - chr3_3:73698021-73698040 Msa0471420:intron 20.0%
!! AAGATATACATACTAGAATT+AGG + chr3_3:73698171-73698190 None:intergenic 20.0%
!! TAGTATGTATATCTTAATCA+AGG - chr3_3:73698176-73698195 Msa0471420:intron 20.0%
!!! GTTACAACAGAAAATTTTAT+TGG - chr3_3:73698235-73698254 Msa0471420:intron 20.0%
!!! TTTTATTCTTCTATTTCCAA+TGG - chr3_3:73698404-73698423 Msa0471420:intron 20.0%
!!! ATAACATTTGGTTTGTATTT+TGG - chr3_3:73698623-73698642 Msa0471420:intron 20.0%
!! GATGATGTTTATGTAAATAT+TGG - chr3_3:73698823-73698842 Msa0471420:intron 20.0%
!!! AATCAGGTTTTAAACTTTTA+TGG - chr3_3:73699227-73699246 Msa0471420:intron 20.0%
!! TAAAAAAACCTATAACAAAC+GGG + chr3_3:73699656-73699675 None:intergenic 20.0%
!!! TTTCTTTGTATTTCTAAAAG+TGG + chr3_3:73700046-73700065 None:intergenic 20.0%
!! AAAACAATATGAAATCAGTT+TGG - chr3_3:73700248-73700267 Msa0471420:intron 20.0%
!! TTATATTGGAGTTGTATATT+GGG - chr3_3:73700611-73700630 Msa0471420:CDS 20.0%
!!! CAATCTTGTTATCATTTTTT+TGG - chr3_3:73700681-73700700 Msa0471420:intron 20.0%
!! AACAATAATGTTAACTAAGT+GGG + chr3_3:73700870-73700889 None:intergenic 20.0%
!! AAACAATAATGTTAACTAAG+TGG + chr3_3:73700871-73700890 None:intergenic 20.0%
!! GTTTAATCATATGAAATAAC+TGG + chr3_3:73701239-73701258 None:intergenic 20.0%
!!! CTTTTCAAAACATTCTTTAA+TGG - chr3_3:73701384-73701403 Msa0471420:intron 20.0%
!!! GTTTGAAATGACAAAAAAAA+TGG + chr3_3:73701561-73701580 None:intergenic 20.0%
!! GATTTAATTATCATTTCAAG+AGG + chr3_3:73701593-73701612 None:intergenic 20.0%
!! AATGATAATTAAATCTCTTG+TGG - chr3_3:73701598-73701617 Msa0471420:intron 20.0%
!! CTAAATTCATATCAATAAAC+AGG - chr3_3:73701676-73701695 Msa0471420:intron 20.0%
! ACAAAATTGTTCAACAGAAT+TGG - chr3_3:73696073-73696092 Msa0471420:three_prime_UTR 25.0%
! AAATTGAAAATGCAGAGTAA+GGG - chr3_3:73696101-73696120 Msa0471420:three_prime_UTR 25.0%
!!! AATTTTCCTTTTTCAGATTG+TGG - chr3_3:73696283-73696302 Msa0471420:three_prime_UTR 25.0%
! GATTCTCACTATTATCATTT+CGG - chr3_3:73696417-73696436 Msa0471420:three_prime_UTR 25.0%
!! TCACGTGCAAATTTTTATTA+AGG - chr3_3:73696557-73696576 Msa0471420:intron 25.0%
!! TACTTAACTTGAATGTTAAG+TGG - chr3_3:73696636-73696655 Msa0471420:intron 25.0%
!! ACTTAACTTGAATGTTAAGT+GGG - chr3_3:73696637-73696656 Msa0471420:intron 25.0%
! ATTAATTCAAACTTGAAGCT+AGG + chr3_3:73696745-73696764 None:intergenic 25.0%
!!! TCTTACATTTTGACATAGAA+AGG - chr3_3:73697638-73697657 Msa0471420:intron 25.0%
!!! GCTTTAAAGAAAATAGAAGA+TGG - chr3_3:73697932-73697951 Msa0471420:intron 25.0%
! AAAGAAAATAGAAGATGGAA+AGG - chr3_3:73697937-73697956 Msa0471420:intron 25.0%
! AAGAAAATAGAAGATGGAAA+GGG - chr3_3:73697938-73697957 Msa0471420:intron 25.0%
!!! ATTCTTAGTTTTAACTTGTC+AGG - chr3_3:73697997-73698016 Msa0471420:intron 25.0%
!!! TTCTTAGTTTTAACTTGTCA+GGG - chr3_3:73697998-73698017 Msa0471420:intron 25.0%
!!! TTTTATTTTTGAGTGGTGTA+GGG - chr3_3:73698028-73698047 Msa0471420:intron 25.0%
!! GAAATTTTCTAAGCAGATAA+AGG + chr3_3:73698209-73698228 None:intergenic 25.0%
!!! CAATATGTGATTTTAACCAT+TGG + chr3_3:73698423-73698442 None:intergenic 25.0%
!! AGTCATTAGTTTAAATAAGC+AGG - chr3_3:73698541-73698560 Msa0471420:intron 25.0%
!!! TGGTTAGTTTTTTCTTTAAC+TGG - chr3_3:73698843-73698862 Msa0471420:intron 25.0%
! TAACAAAAAAGTGACACATT+AGG + chr3_3:73698898-73698917 None:intergenic 25.0%
! TGTTATATGTTTCTTCTGTA+CGG - chr3_3:73698913-73698932 Msa0471420:intron 25.0%
!!! GTTATTGGTTTCAAAGAAAA+CGG + chr3_3:73699054-73699073 None:intergenic 25.0%
!!! TTTTTAGTGAAAGAAGGTTT+TGG - chr3_3:73699448-73699467 Msa0471420:intron 25.0%
!! TGATAGGTATGATTTGATTT+CGG - chr3_3:73699488-73699507 Msa0471420:intron 25.0%
!! AAGATAACATCCAAGTTTTT+AGG - chr3_3:73699629-73699648 Msa0471420:intron 25.0%
!! AGATAACATCCAAGTTTTTA+GGG - chr3_3:73699630-73699649 Msa0471420:intron 25.0%
!! ATTGGATACTTTCCTTATTT+GGG - chr3_3:73700221-73700240 Msa0471420:intron 25.0%
!! ATTGTTTTCTAACCCAAATA+AGG + chr3_3:73700236-73700255 None:intergenic 25.0%
!! AATTGCACCATCATTTTATA+TGG + chr3_3:73700398-73700417 None:intergenic 25.0%
!!! AAATTTAGACTGCCTTATTT+TGG - chr3_3:73700572-73700591 Msa0471420:CDS 25.0%
! CAATATACAACTCCAATATA+AGG + chr3_3:73700612-73700631 None:intergenic 25.0%
! CTTATATTGGAGTTGTATAT+TGG - chr3_3:73700610-73700629 Msa0471420:CDS 25.0%
! AATAATGATAAGATCGATTG+TGG + chr3_3:73700825-73700844 None:intergenic 25.0%
!!! ATATTTTATTTTGTGCCTCT+TGG - chr3_3:73700904-73700923 Msa0471420:intron 25.0%
!!! TATGGAATTTTAGCAGATAA+GGG + chr3_3:73701094-73701113 None:intergenic 25.0%
!!! ATATGGAATTTTAGCAGATA+AGG + chr3_3:73701095-73701114 None:intergenic 25.0%
! AATCATATGAAATAACTGGT+TGG + chr3_3:73701235-73701254 None:intergenic 25.0%
!!! CCATTGCAATTTTTATTTAC+GGG + chr3_3:73701349-73701368 None:intergenic 25.0%
!!! CCCATTGCAATTTTTATTTA+CGG + chr3_3:73701350-73701369 None:intergenic 25.0%
! CCGTAAATAAAAATTGCAAT+GGG - chr3_3:73701347-73701366 Msa0471420:CDS 25.0%
! ATATCAAAATCCTTAGTTGT+TGG - chr3_3:73701442-73701461 Msa0471420:intron 25.0%
! TGAAATGACAAAAAAAATGG+CGG + chr3_3:73701558-73701577 None:intergenic 25.0%
! AAATATTTGTGCAGCAAAAA+TGG + chr3_3:73701708-73701727 None:intergenic 25.0%
! TTTCTTAGATACTCAAAGTT+GGG + chr3_3:73701995-73702014 None:intergenic 25.0%
! ATTTCTTAGATACTCAAAGT+TGG + chr3_3:73701996-73702015 None:intergenic 25.0%
! AATTATTTATAGGAGTGACA+TGG - chr3_3:73702387-73702406 Msa0471420:CDS 25.0%
AAAGGAAAAAGAAAAGTGAG+AGG - chr3_3:73695983-73696002 Msa0471420:three_prime_UTR 30.0%
! CTTCTTTGTTTGATACTTCT+GGG + chr3_3:73696023-73696042 None:intergenic 30.0%
GAAATTGAAAATGCAGAGTA+AGG - chr3_3:73696100-73696119 Msa0471420:three_prime_UTR 30.0%
!! AATGTTAAGTGGGTTATGTT+CGG - chr3_3:73696647-73696666 Msa0471420:intron 30.0%
! AACCAAAAGTTTTTCATTCC+AGG - chr3_3:73696976-73696995 Msa0471420:intron 30.0%
! ACCAAAAGTTTTTCATTCCA+GGG - chr3_3:73696977-73696996 Msa0471420:intron 30.0%
CAAAAAGTTAGCGATTTGAT+TGG - chr3_3:73697079-73697098 Msa0471420:intron 30.0%
!! AGTTTGATAATGTGTCGTTT+AGG - chr3_3:73697139-73697158 Msa0471420:intron 30.0%
!! GTTTGATAATGTGTCGTTTA+GGG - chr3_3:73697140-73697159 Msa0471420:intron 30.0%
ATAGGTATACTCACAAAGTT+TGG - chr3_3:73697285-73697304 Msa0471420:intron 30.0%
TAGGTATACTCACAAAGTTT+GGG - chr3_3:73697286-73697305 Msa0471420:intron 30.0%
TATGGCAAAGTCATTTACAA+TGG + chr3_3:73697404-73697423 None:intergenic 30.0%
AAAGCCATACATTAGAATTC+AGG + chr3_3:73697480-73697499 None:intergenic 30.0%
AACTCATTATCAACTTATGC+AGG + chr3_3:73697552-73697571 None:intergenic 30.0%
! TATGACAAACTTTCCCTTTT+TGG - chr3_3:73697587-73697606 Msa0471420:intron 30.0%
TTAGCAATAGCAGTTGTTAA+AGG + chr3_3:73697687-73697706 None:intergenic 30.0%
AGAAAACTCTGTAATGTAAC+TGG - chr3_3:73697716-73697735 Msa0471420:intron 30.0%
GAAATAACTATGCTCAGAAT+CGG + chr3_3:73697775-73697794 None:intergenic 30.0%
!! ATTATTGTGCGGTTTGTTAT+TGG - chr3_3:73697962-73697981 Msa0471420:intron 30.0%
!!! TTTTAACTTGTCAGGGATTT+TGG - chr3_3:73698005-73698024 Msa0471420:intron 30.0%
!!! GTTTTATTTTTGAGTGGTGT+AGG - chr3_3:73698027-73698046 Msa0471420:intron 30.0%
!!! TTTATTTTTGAGTGGTGTAG+GGG - chr3_3:73698029-73698048 Msa0471420:intron 30.0%
TTTATTGGATCTCTTTCTCT+AGG - chr3_3:73698250-73698269 Msa0471420:intron 30.0%
TCTTTCTCTAGGTAATTGTT+TGG - chr3_3:73698261-73698280 Msa0471420:intron 30.0%
! GAATTTGCTCATTCTGAATT+TGG - chr3_3:73698311-73698330 Msa0471420:intron 30.0%
AATTGATGTCAACTCAAGAT+TGG + chr3_3:73698494-73698513 None:intergenic 30.0%
TAAATAAGCAGGCAAATATG+AGG - chr3_3:73698552-73698571 Msa0471420:intron 30.0%
TCATAGTTGCTAAATATGGT+TGG - chr3_3:73698595-73698614 Msa0471420:intron 30.0%
! TGGTTGGTTCTTATAACATT+TGG - chr3_3:73698611-73698630 Msa0471420:intron 30.0%
! AAAACAATTTAGCCTTCTCT+GGG + chr3_3:73698753-73698772 None:intergenic 30.0%
! AAAAACAATTTAGCCTTCTC+TGG + chr3_3:73698754-73698773 None:intergenic 30.0%
TCATATGATCATATACCCAT+TGG + chr3_3:73698977-73698996 None:intergenic 30.0%
! TTATTTGGGACTACAGTTAT+TGG + chr3_3:73699069-73699088 None:intergenic 30.0%
! ATTTTCTCTCCAACTCAATT+TGG - chr3_3:73699352-73699371 Msa0471420:intron 30.0%
!!! GCTAAGTTTTTAGTGAAAGA+AGG - chr3_3:73699442-73699461 Msa0471420:intron 30.0%
!! ATGATTTGATTTCGGTTTTC+TGG - chr3_3:73699496-73699515 Msa0471420:intron 30.0%
TGTCTTCTTTCGACAAATAA+TGG - chr3_3:73699588-73699607 Msa0471420:intron 30.0%
TAACTGGATCATCCAATTAA+GGG + chr3_3:73700101-73700120 None:intergenic 30.0%
ATAACTGGATCATCCAATTA+AGG + chr3_3:73700102-73700121 None:intergenic 30.0%
!!! TGCATTTTGAAGTTGATAAC+TGG + chr3_3:73700117-73700136 None:intergenic 30.0%
AAATCAGTATTTGCTTTGCT+TGG - chr3_3:73700188-73700207 Msa0471420:intron 30.0%
AATCAGTATTTGCTTTGCTT+GGG - chr3_3:73700189-73700208 Msa0471420:intron 30.0%
CATTGGATACTTTCCTTATT+TGG - chr3_3:73700220-73700239 Msa0471420:intron 30.0%
! TGAAATCAGTTTGGTTTAAG+AGG - chr3_3:73700257-73700276 Msa0471420:intron 30.0%
CTAGAGTCCATATAAAATGA+TGG - chr3_3:73700388-73700407 Msa0471420:CDS 30.0%
TTTACAATGAAGTCAACCAT+AGG - chr3_3:73700416-73700435 Msa0471420:CDS 30.0%
CTCATAACGCATAACTAATA+AGG - chr3_3:73700495-73700514 Msa0471420:intron 30.0%
! TGTTGATAAGGATCTAGAAT+TGG + chr3_3:73700779-73700798 None:intergenic 30.0%
CTTATCATTATTCACGAATG+TGG - chr3_3:73700833-73700852 Msa0471420:intron 30.0%
!!! ATTTTTTAAATAGGGCCAAG+AGG + chr3_3:73700922-73700941 None:intergenic 30.0%
!! ATTCTGGTTCATACCATTTA+TGG + chr3_3:73701178-73701197 None:intergenic 30.0%
ATAAATGGTATGAACCAGAA+TGG - chr3_3:73701177-73701196 Msa0471420:intron 30.0%
ATATGAAATAACTGGTTGGT+TGG + chr3_3:73701231-73701250 None:intergenic 30.0%
CCCGTAAATAAAAATTGCAA+TGG - chr3_3:73701346-73701365 Msa0471420:CDS 30.0%
TATATTCCACATCATATGAC+AGG + chr3_3:73701415-73701434 None:intergenic 30.0%
TTCATATCAATAAACAGGTC+AGG - chr3_3:73701681-73701700 Msa0471420:intron 30.0%
! TCAAAGTTGGGATATCTTTT+TGG + chr3_3:73701983-73702002 None:intergenic 30.0%
!! ACAACATGCATTTGTTTTTC+AGG - chr3_3:73702069-73702088 Msa0471420:intron 30.0%
GACTGTCAATGTAATATACA+AGG - chr3_3:73702138-73702157 Msa0471420:intron 30.0%
GTCACAAGTTAATGTAAAGA+TGG + chr3_3:73702195-73702214 None:intergenic 30.0%
! TTTTGTACATTGTATACTGC+TGG - chr3_3:73702434-73702453 Msa0471420:exon 30.0%
TTTGTACATTGTATACTGCT+GGG - chr3_3:73702435-73702454 Msa0471420:exon 30.0%
! TTGAGTGATGGTTATGTTTT+AGG - chr3_3:73702462-73702481 Msa0471420:five_prime_UTR 30.0%
!! TTATGTTTTAGGTGAAAGCT+AGG - chr3_3:73702473-73702492 Msa0471420:five_prime_UTR 30.0%
!! TATGTTTTAGGTGAAAGCTA+GGG - chr3_3:73702474-73702493 Msa0471420:five_prime_UTR 30.0%
GAAAAAGAAAAGTGAGAGGT+TGG - chr3_3:73695987-73696006 Msa0471420:three_prime_UTR 35.0%
! GCTTCTTTGTTTGATACTTC+TGG + chr3_3:73696024-73696043 None:intergenic 35.0%
! ACATTGAGATGAAAAGTGCA+GGG + chr3_3:73696169-73696188 None:intergenic 35.0%
! AACATTGAGATGAAAAGTGC+AGG + chr3_3:73696170-73696189 None:intergenic 35.0%
GATGAATGGATAAGAAGAGA+AGG + chr3_3:73696235-73696254 None:intergenic 35.0%
AAAGAGCTTGATAGAATCAC+TGG - chr3_3:73696336-73696355 Msa0471420:three_prime_UTR 35.0%
GAAAAATGAAGTTACTGACC+TGG + chr3_3:73696362-73696381 None:intergenic 35.0%
!!! TCACGCTGTGTTTATTTTTG+TGG - chr3_3:73696582-73696601 Msa0471420:intron 35.0%
! TCCCTGGAATGAAAAACTTT+TGG + chr3_3:73696981-73697000 None:intergenic 35.0%
GGAAAATTTAATTCACCTGC+AGG + chr3_3:73697044-73697063 None:intergenic 35.0%
!!! ACAAGAGGGTTTTGTTTCAA+AGG - chr3_3:73697212-73697231 Msa0471420:intron 35.0%
!!! CAAGAGGGTTTTGTTTCAAA+GGG - chr3_3:73697213-73697232 Msa0471420:intron 35.0%
AGTATACCTATGACTACCAA+GGG + chr3_3:73697276-73697295 None:intergenic 35.0%
GAAGCCTGAATTCTAATGTA+TGG - chr3_3:73697473-73697492 Msa0471420:intron 35.0%
!! TGTATGGCTTTAACATGAGT+TGG - chr3_3:73697489-73697508 Msa0471420:CDS 35.0%
CAACTTATGCAGGAAAGAAA+AGG + chr3_3:73697542-73697561 None:intergenic 35.0%
!!! TTATTTTTGAGTGGTGTAGG+GGG - chr3_3:73698030-73698049 Msa0471420:intron 35.0%
GATTGATTGTAACTTGGAAG+CGG - chr3_3:73698054-73698073 Msa0471420:intron 35.0%
AAGACATTGATCGTGAGAAT+AGG - chr3_3:73698131-73698150 Msa0471420:intron 35.0%
TCTAAGCAGATAAAGGATGA+AGG + chr3_3:73698202-73698221 None:intergenic 35.0%
TCAGAATGAGCAAATTCACT+TGG + chr3_3:73698308-73698327 None:intergenic 35.0%
GCACTCATAGTTGCTAAATA+TGG - chr3_3:73698591-73698610 Msa0471420:intron 35.0%
TTACTTTATGCTCTACTCAC+AGG + chr3_3:73698654-73698673 None:intergenic 35.0%
GATTTCTCTAATGCATAGAG+TGG + chr3_3:73698944-73698963 None:intergenic 35.0%
AAATCCCTGTTTGTACCAAT+GGG - chr3_3:73698959-73698978 Msa0471420:intron 35.0%
TATACCCATTGGTACAAACA+GGG + chr3_3:73698966-73698985 None:intergenic 35.0%
ATATACCCATTGGTACAAAC+AGG + chr3_3:73698967-73698986 None:intergenic 35.0%
!! GACCTAAAGTGCTGTTATTT+GGG + chr3_3:73699083-73699102 None:intergenic 35.0%
! TTTAGGTCGACTTTAGTGTT+TGG - chr3_3:73699095-73699114 Msa0471420:intron 35.0%
AGAAATGCTAGGAATGACAT+GGG + chr3_3:73699313-73699332 None:intergenic 35.0%
! TCCAACTCAATTTGGAATCA+TGG - chr3_3:73699360-73699379 Msa0471420:intron 35.0%
GTATGAAGAATAAATACCCC+TGG + chr3_3:73699386-73699405 None:intergenic 35.0%
! GGGGTATTTATTCTTCATAC+TGG - chr3_3:73699386-73699405 Msa0471420:intron 35.0%
TGTTGTTCTTGTTGCATGAT+AGG - chr3_3:73699472-73699491 Msa0471420:intron 35.0%
AACTTGGATGTTATCTTGAG+AGG + chr3_3:73699626-73699645 None:intergenic 35.0%
ACCATAGGATTTAACCAAGA+TGG - chr3_3:73700431-73700450 Msa0471420:CDS 35.0%
CCATAGGATTTAACCAAGAT+GGG - chr3_3:73700432-73700451 Msa0471420:CDS 35.0%
TTTAACCAAGATGGGTGAAA+TGG - chr3_3:73700440-73700459 Msa0471420:intron 35.0%
GTCTATACCACTCCAAAATA+AGG + chr3_3:73700587-73700606 None:intergenic 35.0%
TGGTATAGACTGCCTTATAT+TGG - chr3_3:73700597-73700616 Msa0471420:CDS 35.0%
! AGTTGTATATTGGGCCTTAT+AGG - chr3_3:73700620-73700639 Msa0471420:intron 35.0%
GAATACGGATGTTGTTGATA+AGG + chr3_3:73700791-73700810 None:intergenic 35.0%
! TTTTGTCTGTGAATGTTGAC+AGG - chr3_3:73701150-73701169 Msa0471420:intron 35.0%
ATGTTGACAGGAACCATAAA+TGG - chr3_3:73701162-73701181 Msa0471420:intron 35.0%
! TTTAGTTTCGAATAGCTGCT+TGG - chr3_3:73701297-73701316 Msa0471420:CDS 35.0%
AATTATGTCATGTGCTAGTG+AGG - chr3_3:73701485-73701504 Msa0471420:intron 35.0%
! AGATATTTTCGTCATGCATC+AGG - chr3_3:73701624-73701643 Msa0471420:intron 35.0%
! AAGTTGGGATATCTTTTTGG+TGG + chr3_3:73701980-73701999 None:intergenic 35.0%
!!! TTTTTCAGGAGCAATTTGTG+CGG - chr3_3:73702083-73702102 Msa0471420:intron 35.0%
ATATCAAGAGACAACTCTCA+AGG + chr3_3:73702166-73702185 None:intergenic 35.0%
AGTTCTTCTGATCCACTTTA+TGG - chr3_3:73702282-73702301 Msa0471420:intron 35.0%
CGAATGAAAGAACCATAAAG+TGG + chr3_3:73702297-73702316 None:intergenic 35.0%
TATTTATAGGAGTGACATGG+TGG - chr3_3:73702390-73702409 Msa0471420:CDS 35.0%
ATTTATAGGAGTGACATGGT+GGG - chr3_3:73702391-73702410 Msa0471420:CDS 35.0%
TACAAAAAAGCCTTTGACCA+AGG + chr3_3:73702524-73702543 None:intergenic 35.0%
AGAAGAGAAGCGATGATGAA+TGG + chr3_3:73696249-73696268 None:intergenic 40.0%
GTCTTGCCACAATCTGAAAA+AGG + chr3_3:73696292-73696311 None:intergenic 40.0%
!! CCTATGTTTGGTTTCAGGTT+TGG + chr3_3:73696851-73696870 None:intergenic 40.0%
CCAAACCTGAAACCAAACAT+AGG - chr3_3:73696848-73696867 Msa0471420:intron 40.0%
! CTAAGCCTATGTTTGGTTTC+AGG + chr3_3:73696856-73696875 None:intergenic 40.0%
TGCCTTTCTACTTTCTGTTC+TGG - chr3_3:73696946-73696965 Msa0471420:intron 40.0%
AGCCAGAACAGAAAGTAGAA+AGG + chr3_3:73696951-73696970 None:intergenic 40.0%
AAGGGATTGATTGAGACCAA+TGG - chr3_3:73697231-73697250 Msa0471420:intron 40.0%
AGGGATTGATTGAGACCAAT+GGG - chr3_3:73697232-73697251 Msa0471420:intron 40.0%
TCTCTTAGAGTAAGTCCCAT+TGG + chr3_3:73697250-73697269 None:intergenic 40.0%
GAGTATACCTATGACTACCA+AGG + chr3_3:73697277-73697296 None:intergenic 40.0%
GAATAGAGATGCCATTCGTA+AGG - chr3_3:73697317-73697336 Msa0471420:intron 40.0%
!! ATGGAAAGGGCATTATTGTG+CGG - chr3_3:73697951-73697970 Msa0471420:intron 40.0%
!! TGCGGTTTGTTATTGGTAGA+AGG - chr3_3:73697969-73697988 Msa0471420:intron 40.0%
!!! TATTTTTGAGTGGTGTAGGG+GGG - chr3_3:73698031-73698050 Msa0471420:intron 40.0%
TAACTTTGCAGTCCAAATCG+TGG - chr3_3:73698094-73698113 Msa0471420:intron 40.0%
TGTCAACTCAAGATTGGTGT+AGG + chr3_3:73698488-73698507 None:intergenic 40.0%
TGTCAGGATGATCATGTAGA+AGG - chr3_3:73698715-73698734 Msa0471420:intron 40.0%
GAAATCCCTGTTTGTACCAA+TGG - chr3_3:73698958-73698977 Msa0471420:intron 40.0%
GTCCCAAATAACAGCACTTT+AGG - chr3_3:73699078-73699097 Msa0471420:intron 40.0%
!! CGACCTAAAGTGCTGTTATT+TGG + chr3_3:73699084-73699103 None:intergenic 40.0%
! GTCGACTTTAGTGTTTGGAT+GGG - chr3_3:73699100-73699119 Msa0471420:intron 40.0%
! AGTGGGTTTCTTAAGAAGCT+AGG + chr3_3:73699181-73699200 None:intergenic 40.0%
CTATCTTCTTCTGTCACAGT+GGG + chr3_3:73699198-73699217 None:intergenic 40.0%
CACTGTGACAGAAGAAGATA+GGG - chr3_3:73699197-73699216 Msa0471420:intron 40.0%
AAGATAGGGAATCACGAATC+AGG - chr3_3:73699211-73699230 Msa0471420:intron 40.0%
AGATTGAGAGGAAGGATACA+GGG + chr3_3:73699284-73699303 None:intergenic 40.0%
AAGATTGAGAGGAAGGATAC+AGG + chr3_3:73699285-73699304 None:intergenic 40.0%
GAGAAATGCTAGGAATGACA+TGG + chr3_3:73699314-73699333 None:intergenic 40.0%
TCATTCCTAGCATTTCTCTC+TGG - chr3_3:73699316-73699335 Msa0471420:intron 40.0%
AAGAACCAGAGAGAAATGCT+AGG + chr3_3:73699324-73699343 None:intergenic 40.0%
GCCATGATTCCAAATTGAGT+TGG + chr3_3:73699364-73699383 None:intergenic 40.0%
! TCAATTTGGAATCATGGCCA+GGG - chr3_3:73699366-73699385 Msa0471420:intron 40.0%
!!! TTTTAGGGCCCGTTTGTTAT+AGG - chr3_3:73699645-73699664 Msa0471420:intron 40.0%
ATAACAATCGGGCCCTTAAT+TGG - chr3_3:73700086-73700105 Msa0471420:intron 40.0%
AGGACACATTGATGCTTTGT+TGG - chr3_3:73700277-73700296 Msa0471420:intron 40.0%
CCCATCTTGGTTAAATCCTA+TGG + chr3_3:73700435-73700454 None:intergenic 40.0%
!!! TAGACTGCCTTATTTTGGAG+TGG - chr3_3:73700577-73700596 Msa0471420:CDS 40.0%
! ATATTGGGCCTTATAGGTGA+TGG - chr3_3:73700626-73700645 Msa0471420:intron 40.0%
! TATTGGGCCTTATAGGTGAT+GGG - chr3_3:73700627-73700646 Msa0471420:intron 40.0%
AACATGACCCATCACCTATA+AGG + chr3_3:73700637-73700656 None:intergenic 40.0%
! TGATGGGTCATGTTCTTCAT+AGG - chr3_3:73700643-73700662 Msa0471420:intron 40.0%
GTCATGTTCTTCATAGGTGT+AGG - chr3_3:73700649-73700668 Msa0471420:intron 40.0%
! GTTTTGCTCCTCTAGGTATT+TGG - chr3_3:73700748-73700767 Msa0471420:intron 40.0%
TGGTTCATCCAAATACCTAG+AGG + chr3_3:73700759-73700778 None:intergenic 40.0%
CAACAACATCCGTATTCTTG+TGG - chr3_3:73700794-73700813 Msa0471420:intron 40.0%
GACAAACCTCGTCTTTACAT+GGG - chr3_3:73701028-73701047 Msa0471420:intron 40.0%
ACAAACCTCGTCTTTACATG+GGG - chr3_3:73701029-73701048 Msa0471420:intron 40.0%
AATGGTATGAACCAGAATGG+TGG - chr3_3:73701180-73701199 Msa0471420:intron 40.0%
TTGCAATGAGCCAACAACTA+AGG + chr3_3:73701455-73701474 None:intergenic 40.0%
!! TAGTTGTTGGCTCATTGCAA+AGG - chr3_3:73701455-73701474 Msa0471420:intron 40.0%
GTATGTCATATCACGAGCTT+TGG - chr3_3:73701653-73701672 Msa0471420:intron 40.0%
CACATCAAGTCCAATAAACC+AGG + chr3_3:73701820-73701839 None:intergenic 40.0%
!!! CAAAGTTTTGTTGCTCGTCT+TGG - chr3_3:73701856-73701875 Msa0471420:intron 40.0%
!! TTTTCAGGAGCAATTTGTGC+GGG - chr3_3:73702084-73702103 Msa0471420:intron 40.0%
ACAGTCTTAAGACAATGCAC+TGG + chr3_3:73702124-73702143 None:intergenic 40.0%
ACCACAGTTCGCAAATTCAT+CGG - chr3_3:73702213-73702232 Msa0471420:CDS 40.0%
!! TTCGCAAATTCATCGGTTCA+AGG - chr3_3:73702220-73702239 Msa0471420:CDS 40.0%
TCAGAAGAACTTGTAGGTAG+AGG + chr3_3:73702273-73702292 None:intergenic 40.0%
AGTGGATCAGAAGAACTTGT+AGG + chr3_3:73702279-73702298 None:intergenic 40.0%
TATGGTTCTTTCATTCGCCA+TGG - chr3_3:73702300-73702319 Msa0471420:intron 40.0%
ATGGTTCTTTCATTCGCCAT+GGG - chr3_3:73702301-73702320 Msa0471420:intron 40.0%
GAGGAAGATAACTCTTCTCT+TGG - chr3_3:73702331-73702350 Msa0471420:intron 40.0%
AAAAAAGCCTTTGACCAAGG+TGG + chr3_3:73702521-73702540 None:intergenic 40.0%
GACGTAGATAGAAGCGAAAG+TGG + chr3_3:73696195-73696214 None:intergenic 45.0%
GAGAAGGAAGAAGAACCTTC+CGG + chr3_3:73696219-73696238 None:intergenic 45.0%
CACACTGCTAAGCCTATGTT+TGG + chr3_3:73696863-73696882 None:intergenic 45.0%
ACCATCGAGTTTGACTCACT+AGG - chr3_3:73696914-73696933 Msa0471420:intron 45.0%
TCCTAGTGAGTCAAACTCGA+TGG + chr3_3:73696918-73696937 None:intergenic 45.0%
GAGTTTGACTCACTAGGACT+TGG - chr3_3:73696920-73696939 Msa0471420:intron 45.0%
CTGATATAGCAGATTGTCCC+TGG + chr3_3:73696997-73697016 None:intergenic 45.0%
GGGACAATCTGCTATATCAG+TGG - chr3_3:73696997-73697016 Msa0471420:intron 45.0%
CATTGAAGATCATAGCCTGC+AGG - chr3_3:73697026-73697045 Msa0471420:intron 45.0%
! ACTTGCTGCAGCTAAACAAG+AGG - chr3_3:73697197-73697216 Msa0471420:intron 45.0%
CTTGCTGCAGCTAAACAAGA+GGG - chr3_3:73697198-73697217 Msa0471420:intron 45.0%
! TTACTCTAAGAGACGACCCT+TGG - chr3_3:73697257-73697276 Msa0471420:intron 45.0%
TACTCACAAAGTTTGGGCGA+AGG - chr3_3:73697292-73697311 Msa0471420:intron 45.0%
CAGAGGCAGGAAACCAAAAA+GGG + chr3_3:73697603-73697622 None:intergenic 45.0%
TCAGAGGCAGGAAACCAAAA+AGG + chr3_3:73697604-73697623 None:intergenic 45.0%
!! GAGACGATCGTTTTTCTCAG+AGG + chr3_3:73697620-73697639 None:intergenic 45.0%
!!! ATTTTTGAGTGGTGTAGGGG+GGG - chr3_3:73698032-73698051 Msa0471420:intron 45.0%
!! CCTGACAACAGAAGTGTTGA+AGG + chr3_3:73698702-73698721 None:intergenic 45.0%
CCTTCAACACTTCTGTTGTC+AGG - chr3_3:73698699-73698718 Msa0471420:intron 45.0%
TGATCATGTAGAAGGAAGCC+AGG - chr3_3:73698723-73698742 Msa0471420:intron 45.0%
GATCATGTAGAAGGAAGCCA+GGG - chr3_3:73698724-73698743 Msa0471420:intron 45.0%
! GGTCGACTTTAGTGTTTGGA+TGG - chr3_3:73699099-73699118 Msa0471420:intron 45.0%
CCTATCTTCTTCTGTCACAG+TGG + chr3_3:73699199-73699218 None:intergenic 45.0%
CCACTGTGACAGAAGAAGAT+AGG - chr3_3:73699196-73699215 Msa0471420:intron 45.0%
GATTGAGAGGAAGGATACAG+GGG + chr3_3:73699283-73699302 None:intergenic 45.0%
GGAAAGGAAGATTGAGAGGA+AGG + chr3_3:73699292-73699311 None:intergenic 45.0%
CATGGGAAAGGAAGATTGAG+AGG + chr3_3:73699296-73699315 None:intergenic 45.0%
TGCTAGGAATGACATGGGAA+AGG + chr3_3:73699308-73699327 None:intergenic 45.0%
! CTCAATTTGGAATCATGGCC+AGG - chr3_3:73699365-73699384 Msa0471420:intron 45.0%
! CAATTTGGAATCATGGCCAG+GGG - chr3_3:73699367-73699386 Msa0471420:intron 45.0%
ACAAACGGGCCCTAAAAACT+TGG + chr3_3:73699642-73699661 None:intergenic 45.0%
TTGCTCCATTTCACCCATCT+TGG + chr3_3:73700448-73700467 None:intergenic 45.0%
!!! AGAGCTAGTTTTGCTCCTCT+AGG - chr3_3:73700741-73700760 Msa0471420:intron 45.0%
CAACATCCGTATTCTTGTGG+AGG - chr3_3:73700797-73700816 Msa0471420:intron 45.0%
GTGGATCCTCCACAAGAATA+CGG + chr3_3:73700806-73700825 None:intergenic 45.0%
GGACAAACCTCGTCTTTACA+TGG - chr3_3:73701027-73701046 Msa0471420:intron 45.0%
TACATGGGGTGCATGAAATC+AGG - chr3_3:73701043-73701062 Msa0471420:intron 45.0%
! GAACCAGAATGGTGGAAGTT+TGG - chr3_3:73701188-73701207 Msa0471420:intron 45.0%
TCACCAAACTTCCACCATTC+TGG + chr3_3:73701194-73701213 None:intergenic 45.0%
GAGAAGCCTGTCATATGATG+TGG - chr3_3:73701406-73701425 Msa0471420:intron 45.0%
ACTTGCATGCAAGCTTTGCT+TGG + chr3_3:73701518-73701537 None:intergenic 45.0%
ACCGATGAATTTGCGAACTG+TGG + chr3_3:73702217-73702236 None:intergenic 45.0%
CTTTCATTCGCCATGGGTAT+AGG - chr3_3:73702307-73702326 Msa0471420:intron 45.0%
ATCTTCCTCTCCTATACCCA+TGG + chr3_3:73702320-73702339 None:intergenic 45.0%
!! CTGCTGGGAATTTTGAGTGA+TGG - chr3_3:73702450-73702469 Msa0471420:five_prime_UTR 45.0%
!! GTTTTAGGTGAAAGCTAGGG+TGG - chr3_3:73702477-73702496 Msa0471420:five_prime_UTR 45.0%
!! TAGATAAATAAAAATAAAAA+GGG + chr3_3:73699419-73699438 None:intergenic 5.0%
!!! TTTTAATATAGAAATTTTTA+AGG - chr3_3:73699715-73699734 Msa0471420:CDS 5.0%
!! TAAAAAAAAAAAATACATTT+AGG + chr3_3:73702368-73702387 None:intergenic 5.0%
GAGCCACAGACTCTCAACTA+TGG - chr3_3:73696127-73696146 Msa0471420:three_prime_UTR 50.0%
TCGCCATAGTTGAGAGTCTG+TGG + chr3_3:73696133-73696152 None:intergenic 50.0%
TTCGCTTCTATCTACGTCGC+CGG - chr3_3:73696197-73696216 Msa0471420:three_prime_UTR 50.0%
GCTTGATAGAATCACTGGCC+AGG - chr3_3:73696341-73696360 Msa0471420:three_prime_UTR 50.0%
GAAGCTTGATGCGCTTGAGA+TGG - chr3_3:73697173-73697192 Msa0471420:intron 50.0%
! AGACGACCCTTGGTAGTCAT+AGG - chr3_3:73697267-73697286 Msa0471420:intron 50.0%
GAGATGCCATTCGTAAGGCT+TGG - chr3_3:73697322-73697341 Msa0471420:intron 50.0%
TGCCATTCGTAAGGCTTGGA+TGG - chr3_3:73697326-73697345 Msa0471420:intron 50.0%
GCCATTCGTAAGGCTTGGAT+GGG - chr3_3:73697327-73697346 Msa0471420:intron 50.0%
TCCCATCCAAGCCTTACGAA+TGG + chr3_3:73697331-73697350 None:intergenic 50.0%
!! CGATCGTTTTTCTCAGAGGC+AGG + chr3_3:73697616-73697635 None:intergenic 50.0%
GGGGGGGATTGATTGTAACT+TGG - chr3_3:73698048-73698067 Msa0471420:intron 50.0%
TCCAAATCGTGGAGACAGTC+AGG - chr3_3:73698105-73698124 Msa0471420:intron 50.0%
TCCTGACTGTCTCCACGATT+TGG + chr3_3:73698109-73698128 None:intergenic 50.0%
TTGCTCATGCTGCAGACGAA+TGG - chr3_3:73698773-73698792 Msa0471420:intron 50.0%
TGCTCATGCTGCAGACGAAT+GGG - chr3_3:73698774-73698793 Msa0471420:intron 50.0%
TTGCTTGGGCACATGCTCAT+TGG - chr3_3:73700203-73700222 Msa0471420:intron 50.0%
TTCTTCCTGCACAGATGCCT+TGG - chr3_3:73700982-73701001 Msa0471420:intron 50.0%
TCTTCCTGCACAGATGCCTT+GGG - chr3_3:73700983-73701002 Msa0471420:intron 50.0%
TGCTACGCTTGCAACTCATC+TGG - chr3_3:73701006-73701025 Msa0471420:intron 50.0%
ATGCACCCCATGTAAAGACG+AGG + chr3_3:73701037-73701056 None:intergenic 50.0%
! CAGGCGAAGTTTTCTCCGAA+CGG - chr3_3:73701062-73701081 Msa0471420:intron 50.0%
AGATAAGGGAGCTCACCGTT+CGG + chr3_3:73701080-73701099 None:intergenic 50.0%
GCTCACATCATCATGGGCAT+AGG + chr3_3:73701790-73701809 None:intergenic 50.0%
TCCAGCGCTCACATCATCAT+GGG + chr3_3:73701796-73701815 None:intergenic 50.0%
ATCCAGCGCTCACATCATCA+TGG + chr3_3:73701797-73701816 None:intergenic 50.0%
! AGCGCTGGATCCTGGTTTAT+TGG - chr3_3:73701807-73701826 Msa0471420:intron 50.0%
ATTCGCCATGGGTATAGGAG+AGG - chr3_3:73702312-73702331 Msa0471420:intron 50.0%
TTTGACCAAGGTGGACCACA+TGG + chr3_3:73702512-73702531 None:intergenic 50.0%
ATGTGGTCCACCTTGGTCAA+AGG - chr3_3:73702511-73702530 Msa0471420:five_prime_UTR 50.0%
CTTCTATCTACGTCGCCGGA+AGG - chr3_3:73696201-73696220 Msa0471420:three_prime_UTR 55.0%
CGTAAGGCTTGGATGGGAAG+TGG - chr3_3:73697333-73697352 Msa0471420:intron 55.0%
TGCTGCAGACGAATGGGATG+CGG - chr3_3:73698780-73698799 Msa0471420:intron 55.0%
AGTTGCAAGCGTAGCACCCA+AGG + chr3_3:73701002-73701021 None:intergenic 55.0%
!! ATGATGTGAGCGCTGGATCC+TGG - chr3_3:73701799-73701818 Msa0471420:intron 55.0%
TGTTGCTCGTCTTGGTCGAC+AGG - chr3_3:73701864-73701883 Msa0471420:intron 55.0%
TCTTGGTCGACAGGTCTCAC+TGG - chr3_3:73701873-73701892 Msa0471420:intron 55.0%
AAGCCAGGGACACCCAGAGA+AGG - chr3_3:73698738-73698757 Msa0471420:intron 60.0%
TAGCCTTCTCTGGGTGTCCC+TGG + chr3_3:73698744-73698763 None:intergenic 60.0%
! AGCACCCAAGGCATCTGTGC+AGG + chr3_3:73700990-73701009 None:intergenic 60.0%
! GCCCATGATGATGTGAGCGC+TGG - chr3_3:73701792-73701811 Msa0471420:intron 60.0%
!! AGGAGTGACATGGTGGGCTG+TGG - chr3_3:73702397-73702416 Msa0471420:CDS 60.0%
GGGTGGACAAGTGCTCCATG+TGG - chr3_3:73702494-73702513 Msa0471420:five_prime_UTR 60.0%
GTGCTCCATGTGGTCCACCT+TGG - chr3_3:73702504-73702523 Msa0471420:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73695981 73702576 73695981 ID=Msa0471420;Name=Msa0471420
chr3_3 mRNA 73695981 73702576 73695981 ID=Msa0471420-mRNA-1;Parent=Msa0471420;Name=Msa0471420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=129|0.90|0.91|1|0.90|0.83|12|458|350
chr3_3 exon 73695981 73696466 73695981 ID=Msa0471420-mRNA-1:exon:18738;Parent=Msa0471420-mRNA-1
chr3_3 exon 73696653 73696784 73696653 ID=Msa0471420-mRNA-1:exon:18737;Parent=Msa0471420-mRNA-1
chr3_3 exon 73696860 73696931 73696860 ID=Msa0471420-mRNA-1:exon:18736;Parent=Msa0471420-mRNA-1
chr3_3 exon 73697335 73697385 73697335 ID=Msa0471420-mRNA-1:exon:18735;Parent=Msa0471420-mRNA-1
chr3_3 exon 73697474 73697561 73697474 ID=Msa0471420-mRNA-1:exon:18734;Parent=Msa0471420-mRNA-1
chr3_3 exon 73699713 73699836 73699713 ID=Msa0471420-mRNA-1:exon:18733;Parent=Msa0471420-mRNA-1
chr3_3 exon 73700380 73700452 73700380 ID=Msa0471420-mRNA-1:exon:18732;Parent=Msa0471420-mRNA-1
chr3_3 exon 73700567 73700630 73700567 ID=Msa0471420-mRNA-1:exon:18731;Parent=Msa0471420-mRNA-1
chr3_3 exon 73701203 73701396 73701203 ID=Msa0471420-mRNA-1:exon:18730;Parent=Msa0471420-mRNA-1
chr3_3 exon 73701510 73701559 73701510 ID=Msa0471420-mRNA-1:exon:18729;Parent=Msa0471420-mRNA-1
chr3_3 exon 73702195 73702258 73702195 ID=Msa0471420-mRNA-1:exon:18728;Parent=Msa0471420-mRNA-1
chr3_3 exon 73702335 73702576 73702335 ID=Msa0471420-mRNA-1:exon:18727;Parent=Msa0471420-mRNA-1
chr3_3 five_prime_UTR 73702448 73702576 73702448 ID=Msa0471420-mRNA-1:five_prime_utr;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73702335 73702447 73702335 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73702195 73702258 73702195 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73701510 73701559 73701510 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73701203 73701396 73701203 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73700567 73700630 73700567 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73700380 73700452 73700380 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73699713 73699836 73699713 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73697474 73697561 73697474 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73697335 73697385 73697335 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73696860 73696931 73696860 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73696653 73696784 73696653 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 CDS 73696439 73696466 73696439 ID=Msa0471420-mRNA-1:cds;Parent=Msa0471420-mRNA-1
chr3_3 three_prime_UTR 73695981 73696438 73695981 ID=Msa0471420-mRNA-1:three_prime_utr;Parent=Msa0471420-mRNA-1
Gene Sequence

>Msa0471420

ATGCAGAGTAAGGGATCGAGCCACAGACTCTCAACTATGGCGAATCGATCTCGAATCCCTGCACTTTTCATCTCAATGTTCGCCACTTTCGCTTCTATCTACGTCGCCGGAAGATTGTGGCAAGACGCACAGAATCGTGTTTATCTCATCAAAGAGCTTGATAGAATCACTGGCCAGGGACAATCTGCTATATCAGTGGATGATACATTGAAGATCATAGCCTGCAGGGAACAGCATAAGAAGCTTGATGCGCTTGAGATGGAACTTGCTGCAGCTAAACAAGAGGGTTTTGTTTCAAAGGGATTGATTGAGACCAATGGGACTTACTCTAAGAGACGACCCTTGGTAGTCATAGGTATACTCACAAAGTTTGGGCGAAGGAAGAATAGAGATGCCATTCGTAAGGCTTGGATGGGAAGTGGTGCAGCTTTAAAGAAAATAGAAGATGGAAAGGGCATTATTGTGCGGTTTGTTATTGGTAGAAGTCCAAATCGTGGAGACAGTCAGGATAAAGACATTGATCGTGAGAATAGGTTGACGAATGACTTCCTAATTCTAGATGATCATGTAGAAGGAAGCCAGGGACACCCAGAGAAGGCTAAATTGTTTTTTGCTCATGCTGCAGACGAATGGGATGCGGAGTTTTATGCTAAAGTCAATGATGATGTTTATGTAAATATTGATGCCTTGGGTGCTACGCTTGCAACTCATCTGGACAAACCTCGTCTTTACATGGGGTGCATGAAATCAGGCGAAGTTTTCTCCGAACGGAACCATAAATGGTATGAACCAGAATGGTGGAAGTTTGGTGACAAAAAATCATATTTTCGTCATGCATCAGGAGAGATGTATGTCATATCACGAGCTTTGGCTAAATTCATATCAATAAACAGATCTATTCTTCGTACCTATGCCCATGATGATGTGAGCGCTGGATCCTGGTTTATTGGACTTGATGTGAAGCATGTTGATGAAGCAAAGTTTTGTTGCTCGTCTTGGTCGACAGGTCTCACTGGCTATCTCTTGAGCAATTTGTGCGGGTGTTTGAGTTGA

Protein sequence

>Msa0471420

MQSKGSSHRLSTMANRSRIPALFISMFATFASIYVAGRLWQDAQNRVYLIKELDRITGQGQSAISVDDTLKIIACREQHKKLDALEMELAAAKQEGFVSKGLIETNGTYSKRRPLVVIGILTKFGRRKNRDAIRKAWMGSGAALKKIEDGKGIIVRFVIGRSPNRGDSQDKDIDRENRLTNDFLILDDHVEGSQGHPEKAKLFFAHAADEWDAEFYAKVNDDVYVNIDALGATLATHLDKPRLYMGCMKSGEVFSERNHKWYEPEWWKFGDKKSYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFIGLDVKHVDEAKFCCSSWSTGLTGYLLSNLCGCLS*